Miyakogusa Predicted Gene

Lj3g3v1113600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1113600.1 tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B OS=Medicago
truncatula GN=MTR_4g063240 PE=3 SV=1,87.07,0,seg,NULL;
HISTONE_H2B,Histone H2B; HISTONE H2B,Histone H2B; HISTONEH2B,Histone
H2B; Histone-fold,His,CUFF.42264.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1...   190   4e-49
AT3G53650.1 | Symbols:  | Histone superfamily protein | chr3:198...   186   5e-48
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5...   185   1e-47
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein |...   184   1e-47
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-765...   184   1e-47
AT2G28720.1 | Symbols:  | Histone superfamily protein | chr2:123...   184   1e-47
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | chr...   183   3e-47
AT2G37470.1 | Symbols:  | Histone superfamily protein | chr2:157...   182   7e-47
AT5G02570.1 | Symbols:  | Histone superfamily protein | chr5:576...   175   8e-45
AT3G09480.1 | Symbols:  | Histone superfamily protein | chr3:291...   167   2e-42
AT1G08170.1 | Symbols:  | Histone superfamily protein | chr1:256...   125   7e-30

>AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein |
           chr1:2413049-2413495 FORWARD LENGTH=148
          Length = 148

 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>AT3G53650.1 | Symbols:  | Histone superfamily protein |
           chr3:19889358-19889774 FORWARD LENGTH=138
          Length = 138

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 91/92 (98%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           N+ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 47  NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 106

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct: 107 EIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138


>AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein |
           chr5:24127206-24127658 FORWARD LENGTH=150
          Length = 150

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 59  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 118

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150


>AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein |
           chr3:16897492-16897944 REVERSE LENGTH=150
          Length = 150

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 91/92 (98%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSR
Sbjct: 59  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 118

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150


>AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 |
           chr5:7652130-7652567 REVERSE LENGTH=145
          Length = 145

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSR
Sbjct: 54  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSR 113

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 114 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145


>AT2G28720.1 | Symbols:  | Histone superfamily protein |
           chr2:12327043-12327498 FORWARD LENGTH=151
          Length = 151

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 91/92 (98%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           + ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 60  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 119

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 120 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151


>AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
           chr3:16913614-16914051 REVERSE LENGTH=145
          Length = 145

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 91/92 (98%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSR
Sbjct: 54  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 113

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 114 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145


>AT2G37470.1 | Symbols:  | Histone superfamily protein |
           chr2:15736832-15737248 FORWARD LENGTH=138
          Length = 138

 Score =  182 bits (462), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/90 (96%), Positives = 89/90 (98%)

Query: 53  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 112
           VETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSRE
Sbjct: 49  VETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 108

Query: 113 IQTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 109 IQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138


>AT5G02570.1 | Symbols:  | Histone superfamily protein |
           chr5:576742-577140 REVERSE LENGTH=132
          Length = 132

 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/86 (98%), Positives = 85/86 (98%)

Query: 58  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 117
           IYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 47  IYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 106

Query: 118 RLVLPGELAKHAVSEGTKAVTKFTSS 143
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 RLVLPGELAKHAVSEGTKAVTKFTSS 132


>AT3G09480.1 | Symbols:  | Histone superfamily protein |
           chr3:2914890-2915270 REVERSE LENGTH=126
          Length = 126

 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 83/86 (96%)

Query: 58  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 117
           IY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A ESSRLARYNKKPTITSREIQTAV
Sbjct: 41  IYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAV 100

Query: 118 RLVLPGELAKHAVSEGTKAVTKFTSS 143
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 101 RLVLPGELAKHAVSEGTKAVTKFTSS 126


>AT1G08170.1 | Symbols:  | Histone superfamily protein |
           chr1:2562941-2563672 REVERSE LENGTH=243
          Length = 243

 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 76/85 (89%)

Query: 56  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 115
           Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQE++RL+ Y K+ T++SREI+ 
Sbjct: 151 YRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEA 210

Query: 116 AVRLVLPGELAKHAVSEGTKAVTKF 140
           AVRLVLPGEL++HAV+EG+KAV+ F
Sbjct: 211 AVRLVLPGELSRHAVAEGSKAVSNF 235