Miyakogusa Predicted Gene
- Lj3g3v1089450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1089450.1 Non Chatacterized Hit- tr|F6GU18|F6GU18_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.44,6e-16,seg,NULL,CUFF.42170.1
(98 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 59 8e-10
AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 53 4e-08
AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 49 8e-07
AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 49 8e-07
AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 49 9e-07
>AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:24410953-24414849 REVERSE
LENGTH=704
Length = 704
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 1 MESRWRK----LWINMCVHVPKTV-NHXXXXXXXXXXXXGHVLTSGDGSGYRATTPTXXX 55
M S+WRK L +N+C++VPKT+ + V+ R +TPT
Sbjct: 1 MGSKWRKAKVALGLNLCLYVPKTLEDSSPPRRSDDAVSLSPVIVQ------RPSTPTPSS 54
Query: 56 XXXXXXXXXXXXXXXXQGTCAICLNSLKAGKGHAIFTAECSHS 98
TCAICL ++KAG+GHAIFTAECSHS
Sbjct: 55 SGLRLPRSMSKSSSKK--TCAICLTAMKAGQGHAIFTAECSHS 95
>AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:16274135-16276651 FORWARD
LENGTH=692
Length = 692
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 1 MESRWRK----LWINMCVHVPKTVNHXXXXXXXXXXXXGHVLTSGDGSGYRATTPTXXXX 56
M +RWR+ L +N+C ++P+T+ L S TPT
Sbjct: 1 MGTRWRRMKLALGLNLCTYLPRTLEESPTPLNSTERLSDVALLSPLN---WPMTPTPSSH 57
Query: 57 XXXXXXXXXXXXXXXQGTCAICLNSLKAGKGHAIFTAECSHS 98
TC+ICLN +K G GHA+FTAECSHS
Sbjct: 58 GLKLSRNSSKSSK----TCSICLNKMKEGGGHALFTAECSHS 95
>AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=633
Length = 633
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 74 TCAICLNSLKAGKGHAIFTAECSH 97
TC+ICLN +K G GHAIFTAECSH
Sbjct: 74 TCSICLNKMKEGCGHAIFTAECSH 97
>AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=632
Length = 632
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 74 TCAICLNSLKAGKGHAIFTAECSH 97
TC+ICLN +K G GHAIFTAECSH
Sbjct: 73 TCSICLNKMKEGCGHAIFTAECSH 96
>AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=675
Length = 675
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 74 TCAICLNSLKAGKGHAIFTAECSH 97
TC+ICLN +K G GHAIFTAECSH
Sbjct: 73 TCSICLNKMKEGCGHAIFTAECSH 96