Miyakogusa Predicted Gene
- Lj3g3v1089440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1089440.1 Non Chatacterized Hit- tr|Q9M1S2|Q9M1S2_ARATH
Putative uncharacterized protein T5N23_140
OS=Arabidop,81.36,2e-19,ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY
PROTEIN,NULL; CALCIUM-ACTIVATED CHLORIDE CHANNEL
REGULAT,AV407180.path1.1
(62 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 100 2e-22
AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 100 3e-22
AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 100 3e-22
AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 100 3e-22
AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 100 3e-22
AT1G08050.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 86 4e-18
AT2G22680.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 57 3e-09
AT5G49665.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 54 2e-08
AT5G65683.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 49 6e-07
>AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:24410953-24414849 REVERSE
LENGTH=704
Length = 704
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
MAGTK+ALLKRAMGFVIQNL DRLSV++FSSTARR FPLR MTETG+Q+ALQAVNSL
Sbjct: 263 MAGTKLALLKRAMGFVIQNLGPFDRLSVISFSSTARRNFPLRLMTETGKQEALQAVNSL 321
>AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:16274135-16276651 FORWARD
LENGTH=692
Length = 692
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
MAGTK+ALLKRAMGFVIQNL S+DRLSV+AFSSTARR+FPL +M++ GRQ+ALQAVNS+
Sbjct: 264 MAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLTKMSDAGRQRALQAVNSV 322
>AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=632
Length = 632
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 54/59 (91%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M GTK+ALLKRAMGFVIQNL SSDRLSV+AFSSTARR+FPL +M++ GRQ ALQAVNSL
Sbjct: 254 MGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDAGRQLALQAVNSL 312
>AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=633
Length = 633
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 54/59 (91%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M GTK+ALLKRAMGFVIQNL SSDRLSV+AFSSTARR+FPL +M++ GRQ ALQAVNSL
Sbjct: 255 MGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDAGRQLALQAVNSL 313
>AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=675
Length = 675
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 54/59 (91%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M GTK+ALLKRAMGFVIQNL SSDRLSV+AFSSTARR+FPL +M++ GRQ ALQAVNSL
Sbjct: 254 MGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDAGRQLALQAVNSL 312
>AT1G08050.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr1:2499088-2501311 REVERSE LENGTH=641
Length = 641
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSLD 60
M G K+ L+K AM FVIQNL +DRLSV++FSS ARR+FPLR M+ETG+Q A+QAVNSL
Sbjct: 215 MDGVKMELMKNAMSFVIQNLGETDRLSVISFSSMARRLFPLRLMSETGKQAAMQAVNSLV 274
Query: 61 PD 62
D
Sbjct: 275 AD 276
>AT2G22680.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:9645433-9647484 FORWARD LENGTH=683
Length = 683
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 2 AGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVN 57
+G K+ +LK+ M V+ NL DRLS++AFSS+++R+ PLR+MT GR+ A + V+
Sbjct: 314 SGGKLEMLKQTMRIVLSNLREMDRLSIIAFSSSSKRLSPLRRMTANGRRSARRIVD 369
>AT5G49665.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:20167119-20169420 REVERSE
LENGTH=740
Length = 740
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSST-ARRIFPLRQMTETGRQQALQAVNSL 59
M G K+ ++KRAM VI +L S+DRLS+VA T +R+ PL++MTE G++ A V+ L
Sbjct: 343 MNGAKLQMVKRAMRLVISSLGSADRLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGL 402
>AT5G65683.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:26261472-26263704 FORWARD
LENGTH=717
Length = 717
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 2 AGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
G + +K AM VI L DRLS+V FS+ ++R+ PLR+MT GR+ A + V++L
Sbjct: 336 GGANLQTVKHAMRSVISLLREMDRLSIVVFSTGSKRLMPLRRMTAKGRRSARRMVDAL 393