Miyakogusa Predicted Gene

Lj3g3v1061470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1061470.1 Non Chatacterized Hit- tr|D8TA08|D8TA08_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,35.43,6e-18,no
description,Six-bladed beta-propeller, TolB-like; NHL
REPEAT-CONTAINING PROTEIN,NULL; FAMILY NOT ,CUFF.42103.1
         (481 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14860.1 | Symbols:  | NHL domain-containing protein | chr3:4...   506   e-143
AT3G14860.2 | Symbols:  | NHL domain-containing protein | chr3:4...   503   e-142
AT1G70280.2 | Symbols:  | NHL domain-containing protein | chr1:2...   236   3e-62
AT1G23880.1 | Symbols:  | NHL domain-containing protein | chr1:8...   236   3e-62
AT1G70280.1 | Symbols:  | NHL domain-containing protein | chr1:2...   229   4e-60
AT5G14890.1 | Symbols:  | NHL domain-containing protein | chr5:4...   205   6e-53
AT1G23890.2 | Symbols:  | NHL domain-containing protein | chr1:8...   156   3e-38
AT1G23890.1 | Symbols:  | NHL domain-containing protein | chr1:8...   156   4e-38

>AT3G14860.1 | Symbols:  | NHL domain-containing protein |
           chr3:4998591-5000894 REVERSE LENGTH=492
          Length = 492

 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/484 (58%), Positives = 335/484 (69%), Gaps = 49/484 (10%)

Query: 21  SLRFQAHAAPAGPLIKHLSSLIKWTR-SASKTPHSDENVLQFENGYVVETVVEGNEIGVI 79
           S  FQA AAP+G LIKH+SS++KWT  S+SK   SD NVLQFENGY+VETVVEGN+IGV+
Sbjct: 32  SFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVV 91

Query: 80  PYRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFN 139
           PY+IRVS+ DGEL +VDE NSN+++IT PLSQYSRGRLVAGSFQG TGH DGKP++ARFN
Sbjct: 92  PYKIRVSD-DGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFN 150

Query: 140 HPKGIAMDDKGNTYVADIQNMAIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDV 199
           HP+G+ MDDKGN YVAD  N+AIRKIGD+GVTTIAGGKSN+AGYRDGPSEDAKFSNDFDV
Sbjct: 151 HPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKFSNDFDV 210

Query: 200 VYVRPTCSLLVIDRGNAALRKISLDQEDCDYQ-SSSISSTDILTVIGAVMVGYATCMLQQ 258
           VYVRPTCSLLVIDRGNAALR+ISL +EDCDYQ  SSIS TDIL VIGAV++GYATCMLQQ
Sbjct: 211 VYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQ 270

Query: 259 GFGLPFFSKTKPSASEFKEQVSSEKHM--PFLES--SKEEPGWPSFGQLIVDLSKLSLEA 314
           GFG  FFSKT  S + ++E+   ++ +  P  E   +KEEPGWPSFGQL+ DL KL+LE 
Sbjct: 271 GFGNSFFSKTVGSETSYEEEHPGKEKLSRPVHEKTITKEEPGWPSFGQLLTDLCKLALE- 329

Query: 315 LARAFAQVIPSHLISGSPKR-----GLTPLNDRFLMPEDQV---LVNRKTTPAPLIENRH 366
                   I SHL+   P R      L PL DR +MPED+     V R T PAP+ E+RH
Sbjct: 330 -------FITSHLV---PARFQTNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISESRH 379

Query: 367 VPQVHHTPRTAEXX---XXXXXXXXXXXXXXXXXXXXXHR-SSKR---PEFYGSTEIPPY 419
                H P+  +                          HR SSKR    +FY S E+   
Sbjct: 380 A----HLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEV--- 432

Query: 420 TKSKSQKERPRHRQREKSGEVVFGAEPKPVETKAVD----QSATKFDHYNMR-AKYVSGE 474
            + K  KER R R R+K+ E     EPKP  +  V      +++KFDHYNMR +KY    
Sbjct: 433 AQPKIHKERSRRRHRDKTTET----EPKPTPSDTVKPVEYSNSSKFDHYNMRSSKYGPET 488

Query: 475 SYRF 478
            +RF
Sbjct: 489 PFRF 492


>AT3G14860.2 | Symbols:  | NHL domain-containing protein |
           chr3:4998591-5000894 REVERSE LENGTH=493
          Length = 493

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/485 (58%), Positives = 336/485 (69%), Gaps = 50/485 (10%)

Query: 21  SLRFQAHAAPAGPLIKHLSSLIKWTR-SASKTPHSDENVLQFENGYVVETVVEGNEIGVI 79
           S  FQA AAP+G LIKH+SS++KWT  S+SK   SD NVLQFENGY+VETVVEGN+IGV+
Sbjct: 32  SFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVV 91

Query: 80  PYRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFN 139
           PY+IRVS+ DGEL +VDE NSN+++IT PLSQYSRGRLVAGSFQG TGH DGKP++ARFN
Sbjct: 92  PYKIRVSD-DGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFN 150

Query: 140 HPKGIAMDDKGNTYVADIQNMAIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDV 199
           HP+G+ MDDKGN YVAD  N+AIRKIGD+GVTTIAGGKSN+AGYRDGPSEDAKFSNDFDV
Sbjct: 151 HPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKFSNDFDV 210

Query: 200 VYVRPTCSLLVIDRGNAALRKISLDQEDCDYQ-SSSISSTDILTVIGAVMVGYATCMLQQ 258
           VYVRPTCSLLVIDRGNAALR+ISL +EDCDYQ  SSIS TDIL VIGAV++GYATCMLQQ
Sbjct: 211 VYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQ 270

Query: 259 GFGLPFFSKTK-PSASEFKEQVSSEKHM--PFLES--SKEEPGWPSFGQLIVDLSKLSLE 313
           GFG  FFSKT+  S + ++E+   ++ +  P  E   +KEEPGWPSFGQL+ DL KL+LE
Sbjct: 271 GFGNSFFSKTQVGSETSYEEEHPGKEKLSRPVHEKTITKEEPGWPSFGQLLTDLCKLALE 330

Query: 314 ALARAFAQVIPSHLISGSPKR-----GLTPLNDRFLMPEDQV---LVNRKTTPAPLIENR 365
                    I SHL+   P R      L PL DR +MPED+     V R T PAP+ E+R
Sbjct: 331 --------FITSHLV---PARFQTNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISESR 379

Query: 366 HVPQVHHTPRTAEX---XXXXXXXXXXXXXXXXXXXXXXHR-SSKR---PEFYGSTEIPP 418
           H     H P+  +                          HR SSKR    +FY S E+  
Sbjct: 380 HA----HLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEV-- 433

Query: 419 YTKSKSQKERPRHRQREKSGEVVFGAEPKPVETKAVD----QSATKFDHYNMR-AKYVSG 473
             + K  KER R R R+K+ E     EPKP  +  V      +++KFDHYNMR +KY   
Sbjct: 434 -AQPKIHKERSRRRHRDKTTET----EPKPTPSDTVKPVEYSNSSKFDHYNMRSSKYGPE 488

Query: 474 ESYRF 478
             +RF
Sbjct: 489 TPFRF 493


>AT1G70280.2 | Symbols:  | NHL domain-containing protein |
           chr1:26466086-26468471 REVERSE LENGTH=509
          Length = 509

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 159/234 (67%), Gaps = 5/234 (2%)

Query: 32  GPLIKHLSSLIKWTRSASKTPH---SDENVLQFENGYVVETVVEGNEIGVIPYRIRVSEE 88
           G +  H SSL+KW  S   T     +  ++++FENGY VETV +G+++G+ PY I V   
Sbjct: 34  GFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYSIEVLP- 92

Query: 89  DGELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFNHPKGIAMDD 148
           +GELL +D  NSN+ +I+  LS YSR RLV GS +GY GHVDG+  DA+ NHPKG+ +DD
Sbjct: 93  NGELLILDSENSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKGLTVDD 152

Query: 149 KGNTYVADIQNMAIRKIGDAGVTTIAGGKS-NVAGYRDGPSEDAKFSNDFDVVYVRPTCS 207
           +GN YVAD  N AIRKI + GVTTIAGGK+    G+ DGPSEDAKFSNDFDVVYV  +CS
Sbjct: 153 RGNIYVADTVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYVGSSCS 212

Query: 208 LLVIDRGNAALRKISLDQEDCDYQSSSISSTDILTVIGAVMVGYATCMLQQGFG 261
           LLVIDRGN A+R+I L  +DC YQ  S     I  ++ A   GY   +LQ+  G
Sbjct: 213 LLVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVG 266


>AT1G23880.1 | Symbols:  | NHL domain-containing protein |
           chr1:8436125-8438636 FORWARD LENGTH=545
          Length = 545

 Score =  236 bits (601), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 160/229 (69%), Gaps = 7/229 (3%)

Query: 36  KHLSSLIKWTRSAS-----KTPHSDENVLQFENGYVVETVVEGNEIGVIPYRIRVSEEDG 90
            H +SL+KW  S S     KT    +++++FENGY VETV++G+++G+ PY I+V   +G
Sbjct: 98  NHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVLDGSKLGIEPYSIQV-LSNG 156

Query: 91  ELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFNHPKGIAMDDKG 150
           ELL +D  NSN+ +I+  LS YSR RLV GS +GY GHVDG+  DAR N+PKG+ +DD+G
Sbjct: 157 ELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLNNPKGLTVDDRG 216

Query: 151 NTYVADIQNMAIRKIGDAGVTTIAGGKS-NVAGYRDGPSEDAKFSNDFDVVYVRPTCSLL 209
           N YVAD  N AIRKI +AGVTTIAGGK     G+ DGPSEDAKFSNDFDVVY+  +CSLL
Sbjct: 217 NIYVADTVNNAIRKISEAGVTTIAGGKMVRGGGHVDGPSEDAKFSNDFDVVYLGSSCSLL 276

Query: 210 VIDRGNAALRKISLDQEDCDYQSSSISSTDILTVIGAVMVGYATCMLQQ 258
           VIDRGN A+R+I L  +DC  Q  S     I  ++ AV  GY   +LQ+
Sbjct: 277 VIDRGNQAIREIQLHFDDCADQYGSGFPLGIAVLVAAVFFGYMLALLQR 325


>AT1G70280.1 | Symbols:  | NHL domain-containing protein |
           chr1:26466086-26468116 REVERSE LENGTH=447
          Length = 447

 Score =  229 bits (583), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 146/205 (71%), Gaps = 2/205 (0%)

Query: 58  VLQFENGYVVETVVEGNEIGVIPYRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRL 117
           +++FENGY VETV +G+++G+ PY I V   +GELL +D  NSN+ +I+  LS YSR RL
Sbjct: 1   MVKFENGYSVETVFDGSKLGIEPYSIEVLP-NGELLILDSENSNIYKISSSLSLYSRPRL 59

Query: 118 VAGSFQGYTGHVDGKPNDARFNHPKGIAMDDKGNTYVADIQNMAIRKIGDAGVTTIAGGK 177
           V GS +GY GHVDG+  DA+ NHPKG+ +DD+GN YVAD  N AIRKI + GVTTIAGGK
Sbjct: 60  VTGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGK 119

Query: 178 S-NVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRKISLDQEDCDYQSSSIS 236
           +    G+ DGPSEDAKFSNDFDVVYV  +CSLLVIDRGN A+R+I L  +DC YQ  S  
Sbjct: 120 TVRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGF 179

Query: 237 STDILTVIGAVMVGYATCMLQQGFG 261
              I  ++ A   GY   +LQ+  G
Sbjct: 180 PLGIAVLVAAGFFGYMLALLQRRVG 204


>AT5G14890.1 | Symbols:  | NHL domain-containing protein |
           chr5:4818056-4821534 FORWARD LENGTH=754
          Length = 754

 Score =  205 bits (521), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 191/344 (55%), Gaps = 33/344 (9%)

Query: 34  LIKHLSSLI-KWTRS---------ASKTPHSDENVLQFENGYVVETVVEGNEIGVIPYRI 83
           L+ +++S++ KW  S          +K+  S  +++++E+GY +ETV +G+++G+ PY I
Sbjct: 37  LVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNMETVFDGSKLGIEPYAI 96

Query: 84  RVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFNHPKG 143
            VS   GEL+ +D  NSN+ +I++PLS+Y + +L++GS +GYTGHVDGK  +AR N P+G
Sbjct: 97  EVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGSQEGYTGHVDGKLKEARMNRPRG 156

Query: 144 IAMDDKGNTYVADIQNMAIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDVVYVR 203
           +AMDD+GN YVAD  NMAIRKI D GV+TIA G     G ++   E  +FS+DFD++YV 
Sbjct: 157 LAMDDRGNIYVADTINMAIRKISDDGVSTIAAGGRWSGGSKE---ESMRFSDDFDLIYVS 213

Query: 204 PTCSLLVIDRGNAALRKISLDQEDCDYQSSSISSTDILT--VIGAVMVGYATCMLQQGFG 261
            +CSLLVIDRGN  +++I L   DC        S  + T  ++ AV  GY   +L +   
Sbjct: 214 SSCSLLVIDRGNQLIKEIQLHDHDCSQPEPDTDSLHLGTALLVAAVFFGYMLALLVRRVR 273

Query: 262 LPFFSKTKPSASEFKEQVSSEKHMPFL---------------ESSKEEPGWPSFGQLIVD 306
             F S +  + S+      S    P+                ES KEE    S G+L+V 
Sbjct: 274 SLFSSSSHDTKSKRHVATPSMTMAPYQRYPRPVRQPLIPPQHESEKEEGFLGSLGKLVVK 333

Query: 307 LSKLSLEALARAFAQVIPS--HLISGSPKRGLTPLNDRFLMPED 348
               S+  +      VIP   H      +    P+ + F +PE+
Sbjct: 334 TGS-SVSEMMSGSRNVIPPNFHQYHHQQEPNQWPVQESFAIPEE 376


>AT1G23890.2 | Symbols:  | NHL domain-containing protein |
           chr1:8438900-8440803 REVERSE LENGTH=400
          Length = 400

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 121/205 (59%), Gaps = 7/205 (3%)

Query: 59  LQFENGYVVETVVEGNEIGVIPYRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLV 118
           +  E GY V TVV+G++ G+ PY I        L+ +D + S     + PLS  S     
Sbjct: 23  IVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRF 82

Query: 119 AGSFQGYTGHVDGKPNDARFNHPKGIAMDDKGNTYVADIQNMAIRKIGDAG-VTTIAGGK 177
           AG   G +GHVDGK  ++RF+ P+G A+D KGN YVAD  N AIRKI  +G VTTIAGG 
Sbjct: 83  AG--DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGGI 140

Query: 178 SNVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRKISLDQEDCDYQSSSISS 237
           S   G+RDGP+++A FS+DF++ +V   C LLV D GN  +R+I+L +EDC   S S   
Sbjct: 141 SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHSNLG 200

Query: 238 TDILTVIGAVMVGYATCMLQQGFGL 262
           T  L  IG V+    +C+L    G 
Sbjct: 201 TYSLWSIGIVL----SCILGVAIGF 221


>AT1G23890.1 | Symbols:  | NHL domain-containing protein |
           chr1:8439321-8440803 REVERSE LENGTH=261
          Length = 261

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 121/205 (59%), Gaps = 7/205 (3%)

Query: 59  LQFENGYVVETVVEGNEIGVIPYRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLV 118
           +  E GY V TVV+G++ G+ PY I        L+ +D + S     + PLS  S     
Sbjct: 23  IVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRF 82

Query: 119 AGSFQGYTGHVDGKPNDARFNHPKGIAMDDKGNTYVADIQNMAIRKIGDAG-VTTIAGGK 177
           AG   G +GHVDGK  ++RF+ P+G A+D KGN YVAD  N AIRKI  +G VTTIAGG 
Sbjct: 83  AG--DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGGI 140

Query: 178 SNVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRKISLDQEDCDYQSSSISS 237
           S   G+RDGP+++A FS+DF++ +V   C LLV D GN  +R+I+L +EDC   S S   
Sbjct: 141 SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHSNLG 200

Query: 238 TDILTVIGAVMVGYATCMLQQGFGL 262
           T  L  IG V+    +C+L    G 
Sbjct: 201 TYSLWSIGIVL----SCILGVAIGF 221