Miyakogusa Predicted Gene

Lj3g3v1011170.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1011170.1 Non Chatacterized Hit- tr|D7KC77|D7KC77_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,32.23,5e-18,seg,NULL; PPR,Pentatricopeptide repeat;
PPR_2,Pentatricopeptide repeat; PPR: pentatricopeptide
repea,CUFF.42056.1
         (837 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   625   e-179
AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   619   e-177
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    67   4e-11
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   5e-11
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   1e-10
AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   4e-10
AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   5e-10
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    64   6e-10
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...    64   6e-10
AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   8e-10
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   9e-10
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    60   6e-09
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   6e-09
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    60   7e-09
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   8e-09
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   8e-09
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   8e-09
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-l...    59   1e-08
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   2e-08
AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   2e-08
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    58   3e-08
AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   3e-08
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   3e-08
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   3e-08
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...    57   4e-08
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   4e-08
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   4e-08
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   5e-08
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   5e-08
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   5e-08
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 ...    57   5e-08
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   5e-08
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    57   5e-08
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    57   6e-08
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   8e-08
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   8e-08
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    56   8e-08
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   1e-07
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   1e-07
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup...    56   1e-07
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...    55   1e-07
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    55   1e-07
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-07
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   2e-07
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...    55   2e-07
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    55   2e-07
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   2e-07
AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-07
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re...    55   3e-07
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    55   3e-07
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    55   3e-07
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    55   3e-07
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 ...    54   3e-07
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    54   3e-07
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   4e-07
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   4e-07
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    54   4e-07
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   5e-07
AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   5e-07
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...    54   5e-07
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   5e-07
AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   5e-07
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...    54   5e-07
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   5e-07
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   6e-07
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...    54   6e-07
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   8e-07
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   8e-07
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   8e-07
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110...    53   9e-07
AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    53   9e-07
AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   1e-06
AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   1e-06
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   1e-06
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   1e-06
AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   1e-06
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   1e-06
AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-06
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    52   1e-06
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    52   1e-06
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    52   1e-06
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    52   1e-06
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...    52   1e-06
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   2e-06
AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   2e-06
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    52   2e-06
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   2e-06
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    52   2e-06
AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   2e-06
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   2e-06
AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   3e-06
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   3e-06
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   3e-06
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   3e-06
AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    51   4e-06
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   4e-06
AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   4e-06
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   4e-06
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...    51   4e-06
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-06
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-06
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   6e-06
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   6e-06
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   6e-06
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   6e-06
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   6e-06
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   7e-06
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    50   7e-06
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su...    50   8e-06
AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    50   9e-06
AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   9e-06
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   9e-06
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    49   1e-05

>AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2435007-2439344 REVERSE
           LENGTH=821
          Length = 821

 Score =  625 bits (1613), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/727 (44%), Positives = 468/727 (64%), Gaps = 2/727 (0%)

Query: 97  ILEIPWVPDVPSGDISVKRKEVSRERKQKWVFKYSN-EDRSDRLLGMCAKRLGSKATVEV 155
            L+IP        DIS++ KE+SRERK++ V+K +    R  ++    A++LG++A    
Sbjct: 82  FLKIPSFTTKIPYDISLRTKELSRERKERRVYKQNGLSRRFAKIFRDSAQKLGTEAMFGA 141

Query: 156 FGHLGRETGLKEYNKLIQLCVKKARGADDEDIAIEELSKAFHLLKLMREYGFPLGEQTYR 215
           F  + +E  + EYN +I + ++ A  ++D D A+  + KAF LLK MR+ GF + E+ Y 
Sbjct: 142 FDRVAKEMSVTEYNAMIGVYLEHAEKSNDLDYALGHIEKAFELLKSMRDRGFLIEERVYG 201

Query: 216 PILQYLIDLGMVREFELFSDVIKAENASSTSRLGYYEMMLWLGVNHEEMIRDICEYITVE 275
           P+L YLI + MV EF  F DVI+  +  S  RLGYYEM+LW+ +   E I ++C  I  +
Sbjct: 202 PLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEMLLWIHLGDGEKIEELCSTIDGD 261

Query: 276 DSEDTTALRESYLLALCESDRKTQILDVLKNIDITKLTSVESRSNIFQALGRLQLESDAE 335
           + E  + L+E+YLLALC+ D+K  +  +L+ +DITK+ S +  +NIF+ LGR  L+S A 
Sbjct: 262 NGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRSSDLLANIFEYLGRFSLDSVAS 321

Query: 336 NLLLDLRASDQDPDDISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQ 395
             L +LR SD+   ++S+ I+ ++   PN   ED I+K   +HE LDV+PS +SY+KL++
Sbjct: 322 RFLWELRESDEGVKNVSDLISIYSTCTPNPTVEDTILKFNKMHEELDVMPSSTSYEKLVK 381

Query: 396 YCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGL 455
           Y C   +V TA+D+V+KM EAG  +S  +L S+LH  +E  ++ LV RI+SI+C   +  
Sbjct: 382 YSCDSNEVVTALDVVEKMGEAGLMISADILHSLLHAIDEVLEFDLVRRIHSIMCTKSVKP 441

Query: 456 NNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVL 515
           N E  RS++    R+KDF+GAY M+ +L+  N  P ++M+N I+ GYFREKN+S  L V+
Sbjct: 442 NTENFRSIIRLCTRIKDFEGAYNMLGNLKNFNLEPNSSMFNCILAGYFREKNVSSALMVV 501

Query: 516 KHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEF 575
           K M+EA VKPDS TF YLI NC  E+ I KYYEE+K +G+QATK+I+M+LI+AYAA G+F
Sbjct: 502 KQMKEAGVKPDSITFGYLINNCTQEDAITKYYEEMKQAGVQATKRIYMSLIDAYAASGKF 561

Query: 576 EKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLI 635
           EKAKQV++D +VP    +E+KSVLISALAS  +  +AL IYEE++KA   V+PK++ISLI
Sbjct: 562 EKAKQVLVDPDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLI 621

Query: 636 EELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKFESD 695
            E +                     W+DG FR+I + V+N   S  + L K+ K +    
Sbjct: 622 -EYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKK 680

Query: 696 EIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLN 755
            I +E  FD VF  IA ++ + +  G+DLL  +KDE+G +PSR+ LDFLL AC NA DL 
Sbjct: 681 GIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLE 740

Query: 756 NARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDMEVCSVILSCQN 815
           +  L+W+EY+ A FP NVLS+LRMYQ LLA+GD   A  ++ KIPKDD +V  +I   Q+
Sbjct: 741 HGLLVWKEYQSAAFPCNVLSFLRMYQVLLAAGDSEGAKALVSKIPKDDKDVQHIIEESQS 800

Query: 816 TYSANDN 822
            +S   N
Sbjct: 801 AFSQAPN 807


>AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11605156-11610651 FORWARD
           LENGTH=843
          Length = 843

 Score =  619 bits (1595), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 347/827 (41%), Positives = 506/827 (61%), Gaps = 29/827 (3%)

Query: 1   MRVRKLCTLSSYFRSNLHRKPKFE------LAISNIVSSPEPHHDS-TSDFQLSTLKLHR 53
           M ++   +LS+ FR  +    K        +A  +++S   P   S   DF LS+LK   
Sbjct: 1   MALKAKKSLSAIFRFAMRNAAKTAEVEAKAVAGDSLISDTGPVSMSLIPDF-LSSLK--- 56

Query: 54  ASTPEDSSD--SDVATTQLASIILPSPPVK----KLVSEENGKEEKDRRILEIPWVPDVP 107
             +PEDSS+   D     LA  +  +  VK     L+ E NG++   + +LE     D+ 
Sbjct: 57  --SPEDSSNIGQDFGEPALAGQVSSALDVKSIGYNLLRERNGEKVFPKNVLE---TLDLL 111

Query: 108 S--GDISVKRKEVSRERKQKWVFKYSNEDRSDRLLGMCAKRLGSKATVEVFGHLGRETGL 165
           S  G  S K K+ SR R     ++    +  ++L   C ++LG++   EV   +G+E G 
Sbjct: 112 SRKGCSSQKPKQASRGRMLTENYQNKQSEIMEKLAKGCVRKLGTETMFEVLTKMGKEAGE 171

Query: 166 KEYNKLIQLCVKKARGADDEDIAIEELSKAFHLLKLMREYGFPLGEQTYRPILQYLIDLG 225
           KEYN + +LC+++AR ++D + A++++ KA   LK MR+ GF +GE  Y P  +YL+D+ 
Sbjct: 172 KEYNAMTKLCIQRARRSNDAEYALDQIGKAIEHLKEMRQLGFSIGEGAYGPFFKYLVDME 231

Query: 226 MVREFELFSDVIKAENASSTSRLGYYEMMLWLGVNHEEMIRDICEYITVEDSE-DTTALR 284
           MV EF++  D IK     S  RL YYEM+LW+ VN EE I  +C    V+DS    + L+
Sbjct: 232 MVAEFQILKDFIKEACPESCGRLVYYEMLLWIQVNDEEKIHKLCN--KVDDSGLSLSILQ 289

Query: 285 ESYLLALCESDRKTQILDVLKNIDITKLTSVESRSNIFQALGRLQLESDAENLLLDLRAS 344
           E YL+ALCE D K     +L+ +DIT ++S ++  +IF  LG+  LES A  LL +LR  
Sbjct: 290 EYYLVALCEKDSKENFQKLLEIVDITTVSSPDALKSIFGYLGKSLLESVAMKLLWELRDC 349

Query: 345 DQDP-DDISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKV 403
            +D  + +SN I S+A  IPN   ED I K   LHE LD++PS +SY+ L+ Y CG  +V
Sbjct: 350 RKDGVETVSNLIFSYATCIPNSTVEDAIFKFNKLHEELDIVPSSTSYENLVSYLCGSNEV 409

Query: 404 DTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSL 463
            TA+DIV+ MCEAG  +S  +L S+L   E+  ++ LV RIYSI+    +  N+E  R  
Sbjct: 410 VTALDIVENMCEAGLVISANILHSLLQAIEQILEFNLVQRIYSIMSNKSVKPNSETFRKS 469

Query: 464 VYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANV 523
           +   +R+KDF+GAY M+ +L+  N  P ++MYN+IM GYFREK ++  L VLK M+EA+V
Sbjct: 470 INLCIRIKDFEGAYNMLGNLKNFNLAPNSSMYNSIMAGYFREKKVNSALKVLKEMKEADV 529

Query: 524 KPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVL 583
           KPDS TFSYLI  C  E  I KYY+E+K +G++  K ++M+L+ AYA+CG+FEKAKQV++
Sbjct: 530 KPDSVTFSYLINYCGEEATIAKYYKEMKQAGVEVNKHVYMSLVKAYASCGQFEKAKQVLM 589

Query: 584 DSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQXXX 643
           D EVP K  +E+KSVLISALAS+  + EAL IYEE+KK    VEPKA++SLIE  +    
Sbjct: 590 DLEVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIEN-SDSNA 648

Query: 644 XXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKFESDEIQLEVLF 703
                           +W+DG F++I + V+NN  SS + L +Q K+    D++ +E  F
Sbjct: 649 ELGTLVELTHELRDSKFWIDGFFKIIVFAVRNNRSSSILDLLEQTKNHLSKDDVGVEYWF 708

Query: 704 DSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWRE 763
           + VF  IA ++S+ ++ GLDL+  +K+E+ L PSR+ LDFLL AC NA D  +A L+W E
Sbjct: 709 EEVFKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQSALLVWEE 768

Query: 764 YEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDMEVCSVI 810
           Y+ A  PYNV++YLRMYQ L+A+GD +SA  ++ KIP DD +V  +I
Sbjct: 769 YQCAELPYNVINYLRMYQVLVAAGDSKSAEAIVSKIPNDDKDVKCII 815


>AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:1390049-1393760 FORWARD LENGTH=952
          Length = 952

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 132/325 (40%), Gaps = 46/325 (14%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           ++  FV+LKD+  A+ + ED+ K    P   +YN I+  +    N+   +  +K M++  
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLR 584

Query: 523 VKPDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
            +P ++TF  +I       D+   ++ ++ ++  G   T   F  LIN      + EKA 
Sbjct: 585 HRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAV 644

Query: 580 QVVLDSEVPHKYLHE-IKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEEL 638
           +++ +  +     +E   + ++   AS     +A   +  ++  GL V+    I   E L
Sbjct: 645 EILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVD----IFTYEAL 700

Query: 639 TQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDK-FESDEI 697
                                         +K C ++  + SA+ + K++  +    +  
Sbjct: 701 ------------------------------LKACCKSGRMQSALAVTKEMSARNIPRNSF 730

Query: 698 QLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNA 757
              +L D        ++   +    DL+  +K E G+ P   +    +SAC+ AGD+N A
Sbjct: 731 VYNILID------GWARRGDVWEAADLIQQMKKE-GVKPDIHTYTSFISACSKAGDMNRA 783

Query: 758 RLIWREYEVAGFPYNVLSYLRMYQA 782
                E E  G   N+ +Y  + + 
Sbjct: 784 TQTIEEMEALGVKPNIKTYTTLIKG 808



 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 90/197 (45%), Gaps = 3/197 (1%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P++ +Y  LI     + K+  A+++   M E G   + +    +++   +  D+     +
Sbjct: 482 PTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAV 541

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           +  + +  +  +  +  +++  F  + +   A + ++++QK+   PT   +  I+ GY +
Sbjct: 542 FEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAK 601

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQI 561
             ++   L V   MR     P   TF+ LI      +  E  ++  +E+ L+G+ A +  
Sbjct: 602 SGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHT 661

Query: 562 FMALINAYAACGEFEKA 578
           +  ++  YA+ G+  KA
Sbjct: 662 YTKIMQGYASVGDTGKA 678



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 119/273 (43%), Gaps = 32/273 (11%)

Query: 379 EVLDVL------PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHIC 432
           EV D++      P++ ++  LI       +++ AV+I+D+M  AG + +      I+   
Sbjct: 610 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGY 669

Query: 433 EETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
               D       ++ +    L ++     +L+    +    + A  + +++   N    +
Sbjct: 670 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 729

Query: 493 AMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI---IKYYEE 549
            +YN ++ G+ R  ++     +++ M++  VKPD  T++  I+ C    D+    +  EE
Sbjct: 730 FVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 789

Query: 550 LKLSGIQATKQIFMALINAYA---------ACGEFEKAKQVVLDSEVPHKYLHEIKSVLI 600
           ++  G++   + +  LI  +A         +C E  KA  +  D  V H         L+
Sbjct: 790 MEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYH--------CLL 841

Query: 601 SALASHKQLPEA------LLIYEEVKKAGLGVE 627
           ++L S   + EA      + I +E+ +AGL V+
Sbjct: 842 TSLLSRASIAEAYIYSGVMTICKEMVEAGLIVD 874


>AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4772881-4775697 REVERSE
           LENGTH=938
          Length = 938

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 140/310 (45%), Gaps = 18/310 (5%)

Query: 341 LRASDQDPDDISNFIASFAVSIPNLAAE---DIIVKVENLHEVLDVLPSMSSYKKLIQYC 397
           +R    +PD     IA+F + + +   +   + I+K+ +  +   + PS+ S   ++   
Sbjct: 564 MREKGIEPD-----IATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGML 618

Query: 398 CGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNN 457
           C   K++ A+ I+++M       +    +  L    +      + + +  +  + + L+ 
Sbjct: 619 CENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSR 678

Query: 458 EICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKH 517
           ++  +L+    +L   K A  ++ D++   FIP    +N++M GYF   ++   LS    
Sbjct: 679 QVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSV 738

Query: 518 MREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYAACGE 574
           M EA + P+  T++ +I         +++ K+  E+K  G++     + ALI+  A  G 
Sbjct: 739 MMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGN 798

Query: 575 FEKAK----QVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKA 630
            + +     +++ D  VP    +   +VLIS  A+  ++ +A  + +E+ K G+      
Sbjct: 799 MKGSMTIYCEMIADGLVPKTSTY---NVLISEFANVGKMLQARELLKEMGKRGVSPNTST 855

Query: 631 VISLIEELTQ 640
             ++I  L +
Sbjct: 856 YCTMISGLCK 865



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 462 SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREA 521
           +LV    +  D   A  +I  + + + IP    Y++++ GY ++  +   +S+L+ M + 
Sbjct: 369 ALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQ 428

Query: 522 NVKPDSQTFSYLITN---CQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA 578
           NV P+  T+  +I        EE  I+  +E++L G++    I  AL+N     G  ++ 
Sbjct: 429 NVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEV 488

Query: 579 KQVVLD 584
           K +V D
Sbjct: 489 KGLVKD 494


>AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=574
          Length = 574

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 141/319 (44%), Gaps = 19/319 (5%)

Query: 320 NIFQALGRLQLESDAENLLLDLRASDQDP--DDISNFIASFAVS-IPNLAAE--DIIVKV 374
           N F   G ++   DA   LL ++    +P     +  I  + ++  P  ++E  D++++ 
Sbjct: 123 NAFSESGNME---DAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179

Query: 375 ENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEE 434
            N+    DV P++ ++  L+Q  C   KV+ A ++V KM E G    T    +I     +
Sbjct: 180 GNV----DVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 435 TYDYILVHR--IYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
             + +      +  ++ +     N   C  +V  + R    +   + +  +++M      
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANL 295

Query: 493 AMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEE 549
            ++N+++ G+    +  G   VL  M+E NVK D  T+S ++    S    E   + ++E
Sbjct: 296 VVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKE 355

Query: 550 LKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQL 609
           +  +G++     +  L   Y    E +KA++++    V  +    I + +IS   S+  +
Sbjct: 356 MVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESRPNVVIFTTVISGWCSNGSM 415

Query: 610 PEALLIYEEVKKAGLGVEP 628
            +A+ ++ ++ K   GV P
Sbjct: 416 DDAMRVFNKMCK--FGVSP 432


>AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:11188803-11190605 FORWARD
           LENGTH=600
          Length = 600

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 399 GLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNE 458
           GLLK   A  +VD+M  +G       + SIL  C E+    L  RI+SI+ R +LG N  
Sbjct: 294 GLLK--EADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY 351

Query: 459 ICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHM 518
           +  +L+  + +  + K A+ +  D+ K + +     +N ++ G     +    + +   M
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS----WNTMLHGLGVHGHGKEAIELFSRM 407

Query: 519 REANVKPDSQTFSYLITNCQS----EEDIIKYYEELKLSGIQATKQIFMALINAYAACGE 574
           R   ++PD  TF  ++ +C      +E I  +Y   K+  +    + +  L++     G 
Sbjct: 408 RREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGR 467

Query: 575 FEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQL 609
            ++A +VV    +P +    I   L+ A   H ++
Sbjct: 468 LKEAIKVV--QTMPMEPNVVIWGALLGACRMHNEV 500


>AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1384540-1386447 FORWARD
           LENGTH=635
          Length = 635

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 109/222 (49%), Gaps = 10/222 (4%)

Query: 406 AVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVY 465
           A+DI  +M   GF  S   + S+L  C    D +   +++ +  +  + LN  +  +L+ 
Sbjct: 146 ALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLD 205

Query: 466 FFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKP 525
            + +    K A ++ E +Q      ++  +++++ GY + KN    L + +  +  +++ 
Sbjct: 206 LYAKCGMIKDAVQVFESMQD----KSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQ 261

Query: 526 DSQTFSYLITNCQSEEDII---KYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVV 582
           +  T S +I  C +   +I   + +  +  SG  +   +  + ++ YA CG   ++   +
Sbjct: 262 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRES--YI 319

Query: 583 LDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGL 624
           + SEV  K L E+ + +IS  A H +  E ++++E++++ G+
Sbjct: 320 IFSEVQEKNL-ELWNTIISGFAKHARPKEVMILFEKMQQDGM 360


>AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:5368034-5369641 FORWARD
           LENGTH=535
          Length = 535

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/410 (19%), Positives = 166/410 (40%), Gaps = 74/410 (18%)

Query: 402 KVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEI-- 459
           + ++++ I  ++ + G   S + L ++L++  +   + LVH ++    +   G+   I  
Sbjct: 135 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN-SKESFGITPNIFT 193

Query: 460 CRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMR 519
           C  LV    +  D + AYK+++++  M  +P    Y  I+GGY    ++     VL+ M 
Sbjct: 194 CNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253

Query: 520 EANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
           +    PD+ T++                                 L++ Y   G F +A 
Sbjct: 254 DRGWYPDATTYT--------------------------------VLMDGYCKLGRFSEAA 281

Query: 580 QVVLDSEVPHKYLHEIK-SVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEEL 638
            V+ D E      +E+   V+I AL   K+  EA  +++E+ +     +      +I+ L
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 341

Query: 639 TQXXXXXXXXXXXXXXXXXXDYWVD---GCFRVI--KYCVQNNHLSSAIVLF-------- 685
            +                  D+ VD   G +R +    C+ +N L S ++ +        
Sbjct: 342 CE------------------DHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVT 383

Query: 686 --KQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDF 743
             ++L D+FE   I   + ++++ + +   K    + G   LW    E    P+  + + 
Sbjct: 384 EARKLFDEFEKGSIPSLLTYNTLIAGMC-EKGELTEAG--RLWDDMYERKCKPNAFTYNV 440

Query: 744 LLSACANAGDLNNA-RLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSA 792
           L+   +  G++    R++    E+  FP N  ++L +++ L   G    A
Sbjct: 441 LIEGLSKNGNVKEGVRVLEEMLEIGCFP-NKTTFLILFEGLQKLGKEEDA 489


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 23/273 (8%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS+ +Y  LI   C    ++ A++ +D+M   G   + +   +++    +       +R+
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
              +  +    +     +L+         + A  ++ED+++    P    Y+ ++ G+ R
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQI 561
             ++   L V + M E  +KPD+ T+S LI   C+    ++    YEE+   G+   +  
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522

Query: 562 FMALINAYAACGEFEKAKQVVLDSEVPHK-YLHEI--KSVLISALASHKQLPEA-----L 613
           + ALINAY   G+ EKA Q  L +E+  K  L ++   SVLI+ L    +  EA      
Sbjct: 523 YTALINAYCMEGDLEKALQ--LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLK 580

Query: 614 LIYEEVKKAGL----------GVEPKAVISLIE 636
           L YEE   + +           +E K+V+SLI+
Sbjct: 581 LFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 21/274 (7%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS+ +Y  LI   C   K++ A+ +++ M E G +       ++L     +YD     R+
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
              +    +  +     SL+  F   +  K A  + E++ ++   P    Y A++  Y  
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLIT--NCQSEEDIIK------YYEELKLSGIQ 556
           E ++   L +   M E  V PD  T+S LI   N QS     K      +YEE   S + 
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT 592

Query: 557 ATKQI----------FMALINAYAACGEFEKAKQVVLDSEVP--HKYLHEIKSVLISALA 604
               I           ++LI  +   G   +A QV  +S +   HK      +++I    
Sbjct: 593 YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV-FESMLGKNHKPDGTAYNIMIHGHC 651

Query: 605 SHKQLPEALLIYEEVKKAGLGVEPKAVISLIEEL 638
               + +A  +Y+E+ K+G  +    VI+L++ L
Sbjct: 652 RAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKAL 685


>AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9538572-9540647 REVERSE
           LENGTH=691
          Length = 691

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 15/268 (5%)

Query: 374 VENLHEVLDVLP--SMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
           +E   EV   +P  S+ ++  +I+         + V+I+++M   G   S   L SIL  
Sbjct: 259 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 318

Query: 432 CEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPT 491
           C  + + +    I+  + R  +  +  +  SL+  + +  +   A  +    QK      
Sbjct: 319 CSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQK----DV 374

Query: 492 AAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQ---SEEDIIKYYE 548
           A  +N ++  Y    N    + V   M    VKPD  TF+ ++  C    + E   + + 
Sbjct: 375 AESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHL 434

Query: 549 ELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQ 608
            +  S ++  + +  AL++ Y+ CG  ++A ++   + +P K +    +V+ISA  SH Q
Sbjct: 435 SISESRLETDELLLSALLDMYSKCGNEKEAFRIF--NSIPKKDVVSW-TVMISAYGSHGQ 491

Query: 609 LPEALLIYEEVKKAGL---GVEPKAVIS 633
             EAL  ++E++K GL   GV   AV+S
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLS 519


>AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3134107-3135930 REVERSE
           LENGTH=607
          Length = 607

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 107/247 (43%), Gaps = 10/247 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P + +Y  LI   C   K+D A  + D+MC+ G   +  +  +++H      +  L+   
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           Y  +    L  +  +  +LV  F +  D   A  +++ + +    P    Y  ++ G+ R
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDII---KYYEELKLSGIQATKQI 561
             ++   L + K M +  ++ D   FS L+     E  +I   +   E+  +GI+     
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 562 FMALINAYAACGE----FEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYE 617
           +  +++A+   G+    F+  K++  D  VP    +   +VL++ L    Q+  A ++ +
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTY---NVLLNGLCKLGQMKNADMLLD 544

Query: 618 EVKKAGL 624
            +   G+
Sbjct: 545 AMLNIGV 551



 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 146/367 (39%), Gaps = 24/367 (6%)

Query: 455 LNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSV 514
           LN  +   L+  F +  +   A K+ +++ K +  PT   +N ++ GY +  N+  G  +
Sbjct: 238 LNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRL 297

Query: 515 LKHMREANVKPDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQIFMALINAYAA 571
              M ++  +PD  T+S LI     E  +      ++E+   G+     IF  LI+ ++ 
Sbjct: 298 KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSR 357

Query: 572 CGEFEKAK---QVVLDSEV-PHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVE 627
            GE +  K   Q +L   + P   L+   + L++    +  L  A  I + + + GL  +
Sbjct: 358 NGEIDLMKESYQKMLSKGLQPDIVLY---NTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414

Query: 628 PKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFR--VIKYCVQNNHLSSAIVLF 685
                +LI+   +                         F   V   C +   + +   L 
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474

Query: 686 KQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLL 745
           + L+   + D++   ++ D      A  K    Q G  LL  ++ + G +PS  + + LL
Sbjct: 475 EMLRAGIKPDDVTYTMMMD------AFCKKGDAQTGFKLLKEMQSD-GHVPSVVTYNVLL 527

Query: 746 SACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDME 805
           +     G + NA ++       G   + ++Y       L  G HR AN   + I K ++ 
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITY-----NTLLEGHHRHANSSKRYIQKPEIG 582

Query: 806 VCSVILS 812
           + + + S
Sbjct: 583 IVADLAS 589


>AT5G21222.1 | Symbols:  | protein kinase family protein |
           chr5:7209422-7213700 FORWARD LENGTH=831
          Length = 831

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 30/270 (11%)

Query: 371 IVKVENLHEVLDVL-------PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAG------ 417
           I K+E    +LD++       P+  +   L+Q  C   K++ A +IV KM   G      
Sbjct: 437 IGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVV 496

Query: 418 -FTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGA 476
            F    +    I   C  T + +++ R+      + +  N   C ++V  +      + A
Sbjct: 497 TFNTLAKAYARIGSTC--TAEDMIIPRML----HNKVKPNVRTCGTIVNGYCEEGKMEEA 550

Query: 477 YKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN 536
            +    ++++   P   ++N+++ G+    ++ G   V+  M E  VKPD  TFS L+  
Sbjct: 551 LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNA 610

Query: 537 CQSEEDIIK---YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEV----PH 589
             S  D+ +    Y ++   GI      F  L   YA  GE EKA+Q++         P+
Sbjct: 611 WSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPN 670

Query: 590 KYLHEIKSVLISALASHKQLPEALLIYEEV 619
             ++   + +IS   S  ++ +A+ +Y+++
Sbjct: 671 VVIY---TQIISGWCSAGEMKKAMQVYKKM 697


>AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:6814521-6816404 FORWARD
           LENGTH=627
          Length = 627

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 88/462 (19%), Positives = 173/462 (37%), Gaps = 42/462 (9%)

Query: 393 LIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHH 452
           L++ CC L  VD A++    M E GF   T+    IL +             Y+ + R  
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRME 220

Query: 453 LGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGL 512
           +  N      ++    +    K A   +  ++     PT   YN ++ G+     I G  
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280

Query: 513 SVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAAC 572
            ++  M+    +PD QT++ +++   +E    +   E+K  G+      +  LI   +  
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNN 340

Query: 573 GEFEKA----KQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
           G+ E A     ++V    VP  Y +   + LI  L    ++  A ++  E+++ G+ ++ 
Sbjct: 341 GDLEMAFAYRDEMVKQGMVPTFYTY---NTLIHGLFMENKIEAAEILIREIREKGIVLDS 397

Query: 629 KAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCV-QNNHLSSAIVLFKQ 687
                LI    Q                         +  + Y + + N    A  LF++
Sbjct: 398 VTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEK 457

Query: 688 LKDK-FESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEI-------------- 732
           +  K  + D + +  L D   ++    ++  L   +D++    D++              
Sbjct: 458 VVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGK 517

Query: 733 --------------GLIPSRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLR 778
                         G+ P   S + L+S  +  GD  +A ++  E    GF   +L+Y  
Sbjct: 518 FEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNA 577

Query: 779 MYQALLASGDHRSANLMLKK-----IPKDDMEVCSVILSCQN 815
           + + L  + +   A  +L++     I  +D   CSVI +  N
Sbjct: 578 LLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619



 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 35/241 (14%)

Query: 350 DISNFIASFAVSIPNLAAEDIIVKVEN---LHEVLDVLPSMSSYKKLIQYCCGLLKVDTA 406
           +I + + +F + I  L  E  + K +    + EV  + P++ +Y  L+Q      +++ A
Sbjct: 220 EIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGA 279

Query: 407 VDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYILVHRI-----------YSIICRHHLG 454
             I+ +M   GF    Q    IL  +C E     ++  +           Y+I+ R   G
Sbjct: 280 RLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIR---G 336

Query: 455 LNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSV 514
            +N              D + A+   +++ K   +PT   YN ++ G F E  I     +
Sbjct: 337 CSNN------------GDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEIL 384

Query: 515 LKHMREANVKPDSQTFSYLITN-CQ--SEEDIIKYYEELKLSGIQATKQIFMALINAYAA 571
           ++ +RE  +  DS T++ LI   CQ    +     ++E+   GIQ T+  + +LI  Y  
Sbjct: 385 IREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLI--YVL 442

Query: 572 C 572
           C
Sbjct: 443 C 443


>AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10786948-10789053 REVERSE
           LENGTH=701
          Length = 701

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 184/453 (40%), Gaps = 74/453 (16%)

Query: 322 FQALGRLQLESDAENLLLDLRASDQDPDDIS-NFIASFAVSIPNLAAEDIIVKVENLHE- 379
           F  +GRL   ++A  +++D++     P  I+ N +   AV +       +I   EN+ + 
Sbjct: 157 FSEIGRL---NEAVGMVMDMQNQGLTPSSITMNCVLEIAVEL------GLIEYAENVFDE 207

Query: 380 --VLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSIL-HICEETY 436
             V  V+P  SSYK ++  C    K+  A   +  M + GF         IL  +CE   
Sbjct: 208 MSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENG- 266

Query: 437 DYILVHR-IYSIICRHHLGLNNEICR--SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAA 493
              LV+R I+       LG    +    SL+    +    K A++M+E++ +  + P   
Sbjct: 267 ---LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVY 323

Query: 494 MYNAIMGGYFREKNISGGLSV-LKHMREANVKPDSQTFSYLITNCQSEEDIIK---YYEE 549
            + A++ G  +         + LK +R    KP+  T++ +I     E+ + +    +  
Sbjct: 324 THTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 383

Query: 550 LKLSGIQATKQIFMALINAYAACGEFEKAKQVVL----DSEVPHKYLHEIKSVLISALAS 605
           +K  G+      +  LIN +   G F +A +++     +  +P+ Y +   +  I +L  
Sbjct: 384 MKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTY---NAAIDSLCK 440

Query: 606 HKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGC 665
             + PEA  +  +    GL  +      LI+E                            
Sbjct: 441 KSRAPEAYELLNKAFSCGLEADGVTYTILIQE---------------------------- 472

Query: 666 FRVIKYCVQNNHLSSAIVLFKQL-KDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDL 724
                 C QN+ ++ A+  F ++ K  FE+D ++L  +  + F      K +   F L +
Sbjct: 473 -----QCKQND-INQALAFFCRMNKTGFEAD-MRLNNILIAAFCRQKKMKESERLFQLVV 525

Query: 725 LWAIKDEIGLIPSRQSLDFLLSACANAGDLNNA 757
                  +GLIP++++   ++S     GD++ A
Sbjct: 526 ------SLGLIPTKETYTSMISCYCKEGDIDLA 552



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 19/246 (7%)

Query: 384 LPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHR 443
           +P++ +Y   I   C   +   A ++++K    G   +  V  +IL   +E      +++
Sbjct: 425 MPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLE-ADGVTYTIL--IQEQCKQNDINQ 481

Query: 444 IYSIICRHH-------LGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYN 496
             +  CR +       + LNN     L+  F R K  K + ++ + +  +  IPT   Y 
Sbjct: 482 ALAFFCRMNKTGFEADMRLNN----ILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYT 537

Query: 497 AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLS 553
           +++  Y +E +I   L    +M+     PDS T+  LI+  C+    ++  K YE +   
Sbjct: 538 SMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDR 597

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEAL 613
           G+   +   + L  AY  C   + A  ++L   +  K        L+  L S K++  A 
Sbjct: 598 GLSPPEVTRVTL--AYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVRKLCSEKKVGVAA 655

Query: 614 LIYEEV 619
           L ++++
Sbjct: 656 LFFQKL 661


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 113/259 (43%), Gaps = 6/259 (2%)

Query: 369 DIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSI 428
           D+ + + N  E   +  ++  +  +I   C    V+ AVD+  +M   G   +     S+
Sbjct: 240 DLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299

Query: 429 LHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
           ++       +    R+ S +    +  N     +L+  F +      A K+ E++ + + 
Sbjct: 300 INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSI 359

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN---CQSEEDIIK 545
            P    YN ++ G+     +     + K M   +  P+ QT++ LI     C+  ED ++
Sbjct: 360 DPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVE 419

Query: 546 YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK--SVLISAL 603
            + E+   G+      +  +I  +   G+ + A Q+V    V ++   +I   S+L+  L
Sbjct: 420 LFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA-QMVFKQMVSNRVPTDIMTYSILLHGL 478

Query: 604 ASHKQLPEALLIYEEVKKA 622
            S+ +L  AL+I++ ++K+
Sbjct: 479 CSYGKLDTALVIFKYLQKS 497



 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/432 (18%), Positives = 176/432 (40%), Gaps = 50/432 (11%)

Query: 400 LLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEI 459
           ++KVD AVD+   M ++    S      +L    +   + LV  +   +    LG+++++
Sbjct: 61  IIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQM--QTLGISHDL 118

Query: 460 CRSLVYF--FVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKH 517
               ++   F R      A  ++  + K+ + P     ++++ GY   K IS  ++++  
Sbjct: 119 YTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178

Query: 518 MREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGE 574
           M E   KPD+ TF+ LI          + +   +++   G Q     +  ++N     G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238

Query: 575 FEKAKQVVLDSEVPH-KYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI- 632
            + A  ++   E    K    I + +I +L  ++ +  A+ ++ E++    G+ P  V  
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK--GIRPNVVTY 296

Query: 633 -SLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDK 691
            SLI  L                      W D   R++   ++   ++  +V F  L D 
Sbjct: 297 NSLINCLCNYGR-----------------WSDAS-RLLSNMLE-KKINPNVVTFNALIDA 337

Query: 692 F-------ESDEIQLEVLFDSV------FSVIASSKSTHLQFG-LDLLWAIKDEIGLIPS 737
           F       E++++  E++  S+      ++++ +    H +      ++        +P+
Sbjct: 338 FFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397

Query: 738 RQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLK 797
            Q+ + L++       + +   ++RE    G   N ++Y  + Q    +GD  SA ++ K
Sbjct: 398 IQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFK 457

Query: 798 -----KIPKDDM 804
                ++P D M
Sbjct: 458 QMVSNRVPTDIM 469


>AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22768974-22771274 REVERSE
           LENGTH=766
          Length = 766

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 48/241 (19%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYILVHRIYSI 447
           +Y  LI  CC +  V+ A+   +KM EAG +   ++  +++  +C+   D+         
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH--------- 528

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
                                       A +++E L++  F      YN ++G +  + N
Sbjct: 529 ---------------------------DAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED---IIKYYEELKLSGIQATKQIFMA 564
                 +L  M +   KPDS T++ LI+     +D   + +  E+++  G+  T   + A
Sbjct: 562 TEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621

Query: 565 LINAYAACGEFEKA----KQVVLDSEV-PHKYLHEIKSVLISALASHKQLPEALLIYEEV 619
           +I+AY + GE ++A    K + L S+V P+  ++ I   LI+A +      +AL + EE+
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI---LINAFSKLGNFGQALSLKEEM 678

Query: 620 K 620
           K
Sbjct: 679 K 679



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P    Y  LI   C + +   A+ +V+K+ E GF+L       ++ +  +  +   V+ +
Sbjct: 509 PDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEM 568

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
            + + +     ++    +L+ FF + KDF+   +M+E +++    PT   Y A++  Y  
Sbjct: 569 LTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCS 628

Query: 505 EKNISGGLSVLKHMR-EANVKPDSQTFSYLI---TNCQSEEDIIKYYEELKLSGIQATKQ 560
              +   L + K M   + V P++  ++ LI   +   +    +   EE+K+  ++   +
Sbjct: 629 VGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVE 688

Query: 561 IFMAL 565
            + AL
Sbjct: 689 TYNAL 693


>AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10332375-10334558 REVERSE
           LENGTH=727
          Length = 727

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 48/241 (19%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYILVHRIYSI 447
           +Y  LI  CC +  V+ A+   +KM EAG +   ++  +++  +C+   D+         
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH--------- 528

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
                                       A +++E L++  F      YN ++G +  + N
Sbjct: 529 ---------------------------DAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED---IIKYYEELKLSGIQATKQIFMA 564
                 +L  M +   KPDS T++ LI+     +D   + +  E+++  G+  T   + A
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621

Query: 565 LINAYAACGEFEKA----KQVVLDSEV-PHKYLHEIKSVLISALASHKQLPEALLIYEEV 619
           +I+AY + GE ++A    K + L S+V P+  ++ I   LI+A +      +AL + EE+
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI---LINAFSKLGNFGQALSLKEEM 678

Query: 620 K 620
           K
Sbjct: 679 K 679



 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P    Y  LI   C + +   A+ +V+K+ E GF+L       ++ +  +  +   V+ +
Sbjct: 509 PDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEM 568

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
            + + +     ++    +L+ FF + KDF+   +M+E +++    PT   Y A++  Y  
Sbjct: 569 LTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCS 628

Query: 505 EKNISGGLSVLKHMR-EANVKPDSQTFSYLI---TNCQSEEDIIKYYEELKLSGIQATKQ 560
              +   L + K M   + V P++  ++ LI   +   +    +   EE+K+  ++   +
Sbjct: 629 VGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVE 688

Query: 561 IFMAL 565
            + AL
Sbjct: 689 TYNAL 693


>AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10374927-10377227 FORWARD
           LENGTH=766
          Length = 766

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 48/241 (19%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYILVHRIYSI 447
           +Y  LI  CC +  V+ A+   +KM EAG +   ++  +++  +C+   D+         
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH--------- 528

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
                                       A +++E L++  F      YN ++G +  + N
Sbjct: 529 ---------------------------DAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED---IIKYYEELKLSGIQATKQIFMA 564
                 +L  M +   KPDS T++ LI+     +D   + +  E+++  G+  T   + A
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621

Query: 565 LINAYAACGEFEKA----KQVVLDSEV-PHKYLHEIKSVLISALASHKQLPEALLIYEEV 619
           +I+AY + GE ++A    K + L S+V P+  ++ I   LI+A +      +AL + EE+
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI---LINAFSKLGNFGQALSLKEEM 678

Query: 620 K 620
           K
Sbjct: 679 K 679



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P    Y  LI   C + +   A+ +V+K+ E GF+L       ++ +  +  +   V+ +
Sbjct: 509 PDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEM 568

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
            + + +     ++    +L+ FF + KDF+   +M+E +++    PT   Y A++  Y  
Sbjct: 569 LTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCS 628

Query: 505 EKNISGGLSVLKHMR-EANVKPDSQTFSYLI---TNCQSEEDIIKYYEELKLSGIQATKQ 560
              +   L + K M   + V P++  ++ LI   +   +    +   EE+K+  ++   +
Sbjct: 629 VGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVE 688

Query: 561 IFMAL 565
            + AL
Sbjct: 689 TYNAL 693


>AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:388283-389743 FORWARD
           LENGTH=486
          Length = 486

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 421 STQVLQSILHICEETYDY-ILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKM 479
           S+  ++ IL I +    Y ++V  +  +  R  L L+ + C S++   V+L +F+    +
Sbjct: 291 SSVYVKMILEIAKNPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESL 350

Query: 480 IEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQS 539
            +  +  N  P+  MY  ++   + E+     +SV+  M E+N   D   +  +I    +
Sbjct: 351 FDWFKASNREPSVVMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVA 410

Query: 540 EEDI---IKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSE 586
            +D+   ++YY +LK +G   T  I+  +I+ Y A G   K K++  + E
Sbjct: 411 LDDLGRAMRYYSKLKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVE 460


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           L+  FV+    + A ++++++ +    P    YN+++ G+ +E  +   + ++  M    
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 523 VKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
             PD  TF+ LI   C++   +D ++ + E+ L G+ A    +  L+  +   G+ E AK
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 580 QVVLDSEVPHKYLHEIKS--VLISALASHKQLPEALLIYEEVKKA 622
           + +    V  +   +I S  +L+  L  + +L +AL I+ +++K+
Sbjct: 459 K-LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKS 502



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/261 (18%), Positives = 109/261 (41%), Gaps = 6/261 (2%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P++ +   L+   C   KV  AV ++D+M E GF  +      +L++  ++    L   +
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
              +   ++ L+      ++    +      A+ +  +++   F      YN ++GG+  
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQI 561
                 G  +L+ M +  + P+  TFS LI +   E    +  +  +E+   GI      
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370

Query: 562 FMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKS--VLISALASHKQLPEALLIYEEV 619
           + +LI+ +      E+A Q+V D  +      +I +  +LI+      ++ + L ++ E+
Sbjct: 371 YNSLIDGFCKENRLEEAIQMV-DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM 429

Query: 620 KKAGLGVEPKAVISLIEELTQ 640
              G+        +L++   Q
Sbjct: 430 SLRGVIANTVTYNTLVQGFCQ 450


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 18/300 (6%)

Query: 342 RASDQDPDDISNFIASFAVSIPNL----AAEDIIVKVENLHEV---------LDVLPSMS 388
           R   ++  ++   +  F VS PNL    A  D + K    HE          + + P+  
Sbjct: 345 RGKIEEALNLVKRVVDFGVS-PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDV 403

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSII 448
           +Y  LI   C   K+DTA+  + +M + G  LS     S+++   +  D        + +
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463

Query: 449 CRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNI 508
               L        SL+  +        A ++  ++      P+   +  ++ G FR   I
Sbjct: 464 INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLI 523

Query: 509 SGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYE---ELKLSGIQATKQIFMAL 565
              + +   M E NVKP+  T++ +I     E D+ K +E   E+   GI      +  L
Sbjct: 524 RDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPL 583

Query: 566 INAYAACGEFEKAKQVVLDSEVPHKYLHEI-KSVLISALASHKQLPEALLIYEEVKKAGL 624
           I+     G+  +AK  V      +  L+EI  + L+       +L EAL + +E+ + G+
Sbjct: 584 IHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 113/257 (43%), Gaps = 10/257 (3%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSII 448
           +Y  +I   C   KV+ A  ++++M   GF  +     S++    +       + ++   
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 449 CRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNI 508
               + LN  I  SL+  F ++     AY ++E+L +    P    +N+++    + + I
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708

Query: 509 SGGLSVLKHMREANVKPDSQTFSYLITN-CQSEE--DIIKYYEELKLSGIQATKQIFMAL 565
           +  L   + M+E    P+  T+  LI   C+  +      +++E++  G++ +   +  +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 566 INAYAACGEFEKAKQVV----LDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKK 621
           I+  A  G   +A  +      +  VP    +   + +I  L++  +  +A  ++EE ++
Sbjct: 769 ISGLAKAGNIAEAGALFDRFKANGGVPDSACY---NAMIEGLSNGNRAMDAFSLFEETRR 825

Query: 622 AGLGVEPKAVISLIEEL 638
            GL +  K  + L++ L
Sbjct: 826 RGLPIHNKTCVVLLDTL 842



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/482 (19%), Positives = 187/482 (38%), Gaps = 72/482 (14%)

Query: 361 SIPNLAAEDIIV----KVENLHEVL--------DVLPSMSSYKKLIQYCCGLLKVDTAVD 408
           SIP++ A + I+    K+  + E L        D  P++S+Y  LI   C   K+DTA +
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFE 398

Query: 409 IVDKMCEAGFTLSTQVLQSIL-HICE-----------ETYDYIL---------------- 440
           + D M +AG   + + +  ++  +C+           E  DY +                
Sbjct: 399 LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458

Query: 441 -------VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAA 493
                   +++Y  +       N+ +  SL+  F      +  +K+ +D+   N  P   
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518

Query: 494 MYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYE---EL 550
           + N  M   F+      G ++ + ++     PD++++S LI          + YE    +
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 551 KLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHE---IKSVLISALASHK 607
           K  G     + +  +I+ +  CG+  KA Q++   E+  K           +I  LA   
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL--EEMKTKGFEPTVVTYGSVIDGLAKID 636

Query: 608 QLPEALLIYEEVKKAGLGVEPKAVISLIEELTQXXXXXXX-----XXXXXXXXXXXDYWV 662
           +L EA +++EE K   + +      SLI+   +                         W 
Sbjct: 637 RLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWN 696

Query: 663 DGCFRVIKYCVQNNHLSSAIVLFKQLKD-KFESDEIQLEVLFDSVFSVIASSKSTHLQFG 721
                ++   V+   ++ A+V F+ +K+ K   +++   +L + +  V   +K+      
Sbjct: 697 S----LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF----- 747

Query: 722 LDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQ 781
             + W    + G+ PS  S   ++S  A AG++  A  ++  ++  G   +   Y  M +
Sbjct: 748 --VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIE 805

Query: 782 AL 783
            L
Sbjct: 806 GL 807


>AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20370293-20372848 FORWARD
           LENGTH=851
          Length = 851

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/337 (18%), Positives = 140/337 (41%), Gaps = 49/337 (14%)

Query: 459 ICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHM 518
           +C +++ +  +      A +++  ++     P    YN +M G+ R+KN+     V  ++
Sbjct: 445 VCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNI 504

Query: 519 REANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEF 575
            E  +KP++ T+S LI  C     E++ ++    +  S I+    ++  +IN     G+ 
Sbjct: 505 LEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQT 564

Query: 576 EKAKQVVLDSEVPHKYLHEIKSV--LISALASHKQLPEALLIYEEVKKAGLGVEPKAV-- 631
            KA++++ +     +      S   +I       ++  A+  YEE+   G G+ P  +  
Sbjct: 565 SKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM--CGNGISPNVITY 622

Query: 632 ISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDK 691
            SL+  L                                   +NN +  A+    +++D+
Sbjct: 623 TSLMNGL----------------------------------CKNNRMDQAL----EMRDE 644

Query: 692 FESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANA 751
            ++  ++L++       +    K ++++    L   + +E GL PS+   + L+S   N 
Sbjct: 645 MKNKGVKLDIPAYGAL-IDGFCKRSNMESASALFSELLEE-GLNPSQPIYNSLISGFRNL 702

Query: 752 GDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGD 788
           G++  A  ++++    G   ++ +Y  +   LL  G+
Sbjct: 703 GNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGN 739



 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS   Y  LI     L  +  A+D+  KM + G         +++    +  + IL   +
Sbjct: 687 PSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASEL 746

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           Y+ +    L  +  I   +V    +   F    KM E+++K N  P   +YNA++ G++R
Sbjct: 747 YTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYR 806

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLIT 535
           E N+     +   M +  + PD  TF  L++
Sbjct: 807 EGNLDEAFRLHDEMLDKGILPDGATFDILVS 837



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 136/302 (45%), Gaps = 27/302 (8%)

Query: 345 DQDPDDISNFIASFAVSIPNLAAEDII---VKVENLHEVLDVLPSMSSYKKLIQYCC--- 398
           +Q+  ++ N + S  + +  +  + II    KV    +  ++L +M   K+L   C    
Sbjct: 529 EQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYN 588

Query: 399 ----GLLK---VDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEET-YDYILVHRIYSIIC 449
               G  K   +D+AV   ++MC  G + +     S+++ +C+    D  L  R    + 
Sbjct: 589 SIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMR--DEMK 646

Query: 450 RHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNIS 509
              + L+     +L+  F +  + + A  +  +L +    P+  +YN+++ G+    N+ 
Sbjct: 647 NKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMV 706

Query: 510 GGLSVLKHMREANVKPDSQTFSYLITNCQSEEDII---KYYEELKLSGIQATKQIFMALI 566
             L + K M +  ++ D  T++ LI     + ++I   + Y E++  G+   + I+  ++
Sbjct: 707 AALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIV 766

Query: 567 NAYAACGEFEKA----KQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKA 622
           N  +  G+F K     +++  ++  P+  ++   + +I+       L EA  +++E+   
Sbjct: 767 NGLSKKGQFVKVVKMFEEMKKNNVTPNVLIY---NAVIAGHYREGNLDEAFRLHDEMLDK 823

Query: 623 GL 624
           G+
Sbjct: 824 GI 825



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/261 (18%), Positives = 119/261 (45%), Gaps = 9/261 (3%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P++ SY  ++   C    +D A  +   + E G   +      ++  C   +D      +
Sbjct: 476 PNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEV 535

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAM-YNAIMGGYF 503
            + +   ++ +N  + ++++    ++     A +++ ++ +   +  + M YN+I+ G+F
Sbjct: 536 VNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFF 595

Query: 504 REKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQ 560
           +E  +   ++  + M    + P+  T++ L+   C++   +  ++  +E+K  G++    
Sbjct: 596 KEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIP 655

Query: 561 IFMALINAYAACGEFEKAKQVVLDSEVPHKYLH---EIKSVLISALASHKQLPEALLIYE 617
            + ALI+ +      E A    L SE+  + L+    I + LIS   +   +  AL +Y+
Sbjct: 656 AYGALIDGFCKRSNMESAS--ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYK 713

Query: 618 EVKKAGLGVEPKAVISLIEEL 638
           ++ K GL  +     +LI+ L
Sbjct: 714 KMLKDGLRCDLGTYTTLIDGL 734


>AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15009605-15012319 FORWARD
           LENGTH=904
          Length = 904

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 15/244 (6%)

Query: 390 YKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIIC 449
           Y  +I  C   L +D      ++M   GFT +T     +L +  +   +  V+ ++ +  
Sbjct: 667 YNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAK 726

Query: 450 RHHLGLNNEIC-RSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNI 508
           RH  G+ + I   +++  + + KD+      I+++Q   F  +   YN ++  Y ++K +
Sbjct: 727 RH--GVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQM 784

Query: 509 SGGLSVLKHMREANVKPDSQTFSYLITNCQSEE----DIIKYYEELKLSGIQATKQIFMA 564
               S+LK M+++   PD  T++ +I N   E+    ++    +ELK SG+      +  
Sbjct: 785 EKFRSILKRMKKSTSGPDHYTYNIMI-NIYGEQGWIDEVADVLKELKESGLGPDLCSYNT 843

Query: 565 LINAYAACGEFEKAKQVVLDSE----VPHKYLHEIKSVLISALASHKQLPEALLIYEEVK 620
           LI AY   G  E+A  +V +      +P K  +   + L++AL  + +  EA+     +K
Sbjct: 844 LIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTY---TNLVTALRRNDEFLEAIKWSLWMK 900

Query: 621 KAGL 624
           + G+
Sbjct: 901 QMGI 904


>AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675811 FORWARD
           LENGTH=463
          Length = 463

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 124/284 (43%), Gaps = 23/284 (8%)

Query: 374 VENLHEVLDVL------PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQS 427
           + N+H VL+++      P   +    ++  C   +VD A D++ ++ E      T     
Sbjct: 140 ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNF 199

Query: 428 IL-HICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRL------KDFKGAYKMI 480
           +L H+C+   D   +H +Y  +    +  + ++   LV F + +      K+ + A  ++
Sbjct: 200 LLKHLCK-CKD---LHVVYEFV--DEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLV 253

Query: 481 EDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI---TNC 537
             L    F P   +YN IM G+      S  + V K M+E  V+PD  T++ LI   +  
Sbjct: 254 SKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKA 313

Query: 538 QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK- 596
              E+   Y + +  +G +     + +L+N     GE   A  ++ + E      ++   
Sbjct: 314 GRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTY 373

Query: 597 SVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
           + L+  L   + + + + +YE +K +G+ +E     +L+  L +
Sbjct: 374 NTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVK 417



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 127/297 (42%), Gaps = 17/297 (5%)

Query: 333 DAENLLLDLRASDQDPDDIS-NFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYK 391
           +A++L+ +L      PD  + NF+        +L    +   V+ + +  DV P + S+ 
Sbjct: 177 EAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHV--VYEFVDEMRDDFDVKPDLVSFT 234

Query: 392 KLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYILVHRIYSIICR 450
            LI   C    +  A+ +V K+  AGF     +  +I+   C  +     V  +Y  +  
Sbjct: 235 ILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVG-VYKKMKE 293

Query: 451 HHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISG 510
             +  +     +L++   +    + A   ++ +    + P  A Y ++M G  R+    G
Sbjct: 294 EGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLG 353

Query: 511 GLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALIN 567
            LS+L+ M      P+  T++ L+   C++   +  ++ YE +K SG++     +  L+ 
Sbjct: 354 ALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVR 413

Query: 568 AYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGL 624
           +    G+  +A +V         + + + S  +S  +++  L   L   ++ K+ GL
Sbjct: 414 SLVKSGKVAEAYEV---------FDYAVDSKSLSDASAYSTLETTLKWLKKAKEQGL 461


>AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:21414935-21417616 REVERSE
           LENGTH=893
          Length = 893

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 93/200 (46%), Gaps = 11/200 (5%)

Query: 428 ILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMN 487
           IL  CE     I +H I+  + +  L  N ++C +L+  +++      A K+ +++    
Sbjct: 30  ILSFCESNSSRIGLH-IHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRT 88

Query: 488 FIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDII--- 544
                 M +A    + + +  +  LS+ + M  +   P+  TFS ++ +C    DI    
Sbjct: 89  VFAWTVMISA----FTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGG 144

Query: 545 KYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALA 604
           + +  +  +G +    +  +L + Y+ CG+F++A ++    +          +++IS+L 
Sbjct: 145 RVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISW---TMMISSLV 201

Query: 605 SHKQLPEALLIYEEVKKAGL 624
             ++  EAL  Y E+ KAG+
Sbjct: 202 GARKWREALQFYSEMVKAGV 221


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 462 SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREA 521
           +L+   V+      A ++  D+ +    PT   YN+++ G+ ++  ++    +L  M   
Sbjct: 151 ALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASK 210

Query: 522 NVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA 578
           +  PD  TFS LI   C+++  ++ ++ + E+   GI A    +  LI+ +   G+ + A
Sbjct: 211 SCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAA 270

Query: 579 K---QVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKA 622
           +    V++ S V   Y+   +S+L S L S K+L +A  I E+++K+
Sbjct: 271 QDLLNVMISSGVAPNYI-TFQSMLAS-LCSKKELRKAFAILEDLQKS 315


>AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:890428-892410 REVERSE
           LENGTH=660
          Length = 660

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/315 (16%), Positives = 136/315 (43%), Gaps = 12/315 (3%)

Query: 314 SVESRSNIFQALGRLQLESDAENLLLDLRASDQDPDDISNFIASFAVSIPNLAAEDIIVK 373
           +V + + + ++ G+L +    E LL   R   ++  + + +  +F ++   L +   +  
Sbjct: 186 TVSAANALIKSFGKLGM---VEELLWVWRKMKENGIEPTLYTYNFLMN--GLVSAMFVDS 240

Query: 374 VENLHEVLD---VLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH 430
            E + EV++   + P + +Y  +I+  C   +   A++ +  M   G         +++ 
Sbjct: 241 AERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQ 300

Query: 431 ICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIP 490
            C    D+     +Y  +    + +       ++    +       Y + E++ +    P
Sbjct: 301 ACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKP 360

Query: 491 TAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYY 547
             A+Y  ++ GY +  ++   + +L  M +   KPD  T+S ++   C++   E+ + Y+
Sbjct: 361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420

Query: 548 EELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLD-SEVPHKYLHEIKSVLISALASH 606
              +  G+      + +LI+     G  ++A+++  + SE          + LI A   H
Sbjct: 421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 607 KQLPEALLIYEEVKK 621
           +++ EA+ +++ +++
Sbjct: 481 RKVDEAIALFKRMEE 495


>AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1028292-1030361 FORWARD
           LENGTH=689
          Length = 689

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 113/257 (43%), Gaps = 15/257 (5%)

Query: 380 VLDVLPSMSSYKKLIQYCCGLLKVDTA--VDIVDKMCEAGFTLSTQVLQSILHICEETYD 437
           V D +P    Y   +   C  L  ++   V + D + + GF     V    L  C E  D
Sbjct: 98  VFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQD 157

Query: 438 YILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNA 497
                +I+  + +     +N +   L+  + +  + K A+K+  D+   N +     + +
Sbjct: 158 LDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVV----CWTS 212

Query: 498 IMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIK---YYEELKLSG 554
           ++ GY +      GL +   MRE NV  +  T+  LI  C     + +   ++  L  SG
Sbjct: 213 MIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSG 272

Query: 555 IQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALL 614
           I+ +  +  +L++ Y  CG+   A++V   +E  H  L  + + +I     +  + EAL 
Sbjct: 273 IELSSCLVTSLLDMYVKCGDISNARRVF--NEHSHVDL-VMWTAMIVGYTHNGSVNEALS 329

Query: 615 IYEEVKKAGLGVEPKAV 631
           +++++K  G+ ++P  V
Sbjct: 330 LFQKMK--GVEIKPNCV 344


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 126/280 (45%), Gaps = 14/280 (5%)

Query: 368 EDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQS 427
           E +  KV+ L ++    P + +Y  LI+    +  +  A++++ +M + G  ++T  L +
Sbjct: 397 EAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNT 456

Query: 428 ILH-ICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKM 486
           IL  +C+E       H + +   +    ++     +L+  F R +  + A +M ++++K+
Sbjct: 457 ILDALCKER-KLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKV 515

Query: 487 NFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDI 543
              PT + +N+++GG          +     + E+ + PD  TF+ +I     E   E  
Sbjct: 516 KITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKA 575

Query: 544 IKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK-SVLISA 602
            ++Y E      +        L+N     G  EKA     ++ +  + +  +  + +ISA
Sbjct: 576 FEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALN-FFNTLIEEREVDTVTYNTMISA 634

Query: 603 LASHKQLPEALLIYEEVKKAGLGVEP-----KAVISLIEE 637
               K+L EA  +  E+++ GL  EP      + ISL+ E
Sbjct: 635 FCKDKKLKEAYDLLSEMEEKGL--EPDRFTYNSFISLLME 672


>AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23587298-23588220 FORWARD
           LENGTH=257
          Length = 257

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 120/248 (48%), Gaps = 30/248 (12%)

Query: 401 LKVDTAVD--IVDKMCEAGFTLSTQVLQSILHICEE-------TYDYILVHRIYS----- 446
           +K D  +   IVD++C+ G  ++ Q L + +H  E+       TY+ ++    +S     
Sbjct: 6   IKADVVISTAIVDRLCKDGNHINAQNLFTEMH--EKGIFPNVLTYNCMIDSFCHSGRWSD 63

Query: 447 --IICRHHL--GLNNEIC--RSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
              + RH +   +N +I    +L+  FV+ +    A ++ +++ + +  PT   YN+++ 
Sbjct: 64  ADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMID 123

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQA 557
           G+ ++  +     +L  M      PD  TFS LI   C+++  ++ ++ + E+   GI A
Sbjct: 124 GFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVA 183

Query: 558 TKQIFMALINAYAACGEFEKAKQV---VLDSEVPHKYLHEIKSVLISALASHKQLPEALL 614
               +  LI+ +   G+ + A+ +   ++   V   Y+      +++ L S K+L +A  
Sbjct: 184 NTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYI--TFHCMLAGLCSKKELRKAFA 241

Query: 615 IYEEVKKA 622
           I E+++K+
Sbjct: 242 ILEDLQKS 249


>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 461 RSLVYFFVRLKDFKGAYKMIEDLQKM-NFIPT--AAMYNAIMGGYFREKNISGGLSVLKH 517
           R +V +   +K +  +   IE+ QK+ + IP      +NA++ GY    N    L + K 
Sbjct: 198 RDVVSYTALIKGY-ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256

Query: 518 MREANVKPDSQTFSYLITNCQSEEDIIKYYEELKL----SGIQATKQIFMALINAYAACG 573
           M + NV+PD  T   +++ C ++   I+   ++ L     G  +  +I  ALI+ Y+ CG
Sbjct: 257 MMKTNVRPDESTMVTVVSAC-AQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

Query: 574 EFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVIS 633
           E E A    L   +P+K +    + LI          EALL+++E+ ++G       ++S
Sbjct: 316 ELETA--CGLFERLPYKDVISWNT-LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 372

Query: 634 LIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIV-LFKQLKDKF 692
           ++                         ++D   + +K     + L ++++ ++ +  D  
Sbjct: 373 ILPACAHLGAIDIGRWIHV--------YID---KRLKGVTNASSLRTSLIDMYAKCGDIE 421

Query: 693 ESDEIQLEVLFDSVFS----VIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSAC 748
            + ++   +L  S+ S    +   +         DL   ++ +IG+ P   +   LLSAC
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMR-KIGIQPDDITFVGLLSAC 480

Query: 749 ANAGDLNNARLIWR 762
           +++G L+  R I+R
Sbjct: 481 SHSGMLDLGRHIFR 494


>AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8347200-8349347 FORWARD
           LENGTH=715
          Length = 715

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 22/267 (8%)

Query: 374 VENLHEVLDVLP--SMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
           ++++  V +V+P   + SY  +I         + A+ +V +M        +  L S+L I
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 432 CEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMN---F 488
             E  D I    I+  + R   G++++     VY    L D       IED +++    +
Sbjct: 252 FSEYVDVIKGKEIHGYVIRK--GIDSD-----VYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI---IK 545
                 +N+++ GY +    +  L + + M  A VKP +  FS +I  C     +    +
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 546 YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK-SVLISALA 604
            +  +   G  +   I  AL++ Y+ CG  + A+++     V    L E+  + +I   A
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV----LDEVSWTAIIMGHA 420

Query: 605 SHKQLPEALLIYEEVKKAGLGVEPKAV 631
            H    EA+ ++EE+K+   GV+P  V
Sbjct: 421 LHGHGHEAVSLFEEMKRQ--GVKPNQV 445


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 119/284 (41%), Gaps = 28/284 (9%)

Query: 369 DIIVKVENLHEVLDVLPSMSSYKKLIQY---CCGLLKVDTAVD--------IVDKMCEAG 417
           D+  K  +L E + +   M S K ++ Y     G L++D   D        +   M   G
Sbjct: 295 DMYAKNGSLKEAIKLFSLMPS-KNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRG 353

Query: 418 FTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAY 477
              S      +L  C          +I+++IC+++   +  I  +L+  +  +   +   
Sbjct: 354 LEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGM 413

Query: 478 KMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC 537
           +      K +     A + +++  + + + +     + + +  ++++P+  T S +++ C
Sbjct: 414 QCFASTSKQDI----ASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSAC 469

Query: 538 ------QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKY 591
                  S E I  Y  +   SGI A   +  + I+ YA  G    A QV ++ + P   
Sbjct: 470 ADFAALSSGEQIQGYAIK---SGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVA 526

Query: 592 LHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLI 635
            +   S +IS+LA H    EAL I+E +K  G+    +A + ++
Sbjct: 527 TY---SAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVL 567


>AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 372 VKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
           +K++N+     + P++ ++  LI   C  +K+  A  +  +M       +T    ++++ 
Sbjct: 293 LKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLING 352

Query: 432 CEETYDYILVHRIY-SIICRHHLGLNNEIC--RSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
             +  D+ +  R Y  ++C    G+  +I    +L++   +    + A + +++L K N 
Sbjct: 353 YSQQGDHEMAFRFYEDMVCN---GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENL 409

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSEE 541
           +P ++ ++A++ G    KN   G  + K M  +   P+ QTF+ L++  C++E+
Sbjct: 410 VPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNED 463


>AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 372 VKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
           +K++N+     + P++ ++  LI   C  +K+  A  +  +M       +T    ++++ 
Sbjct: 293 LKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLING 352

Query: 432 CEETYDYILVHRIY-SIICRHHLGLNNEIC--RSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
             +  D+ +  R Y  ++C    G+  +I    +L++   +    + A + +++L K N 
Sbjct: 353 YSQQGDHEMAFRFYEDMVCN---GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENL 409

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSEE 541
           +P ++ ++A++ G    KN   G  + K M  +   P+ QTF+ L++  C++E+
Sbjct: 410 VPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNED 463


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 118/260 (45%), Gaps = 34/260 (13%)

Query: 516 KHMREANVKPDSQTFSYLITNCQ--SEEDIIK-YYEELKLSGIQATKQIFMALINAYAAC 572
           + M  +NV P + TF+ +I +C   S   I K  +    +SG      +  AL+  Y+ C
Sbjct: 96  RRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKC 155

Query: 573 GEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI 632
           G+ E A+QV     +P K +    S L+S    +    EA+ ++ +++++G   +    +
Sbjct: 156 GDMEGARQVF--DRMPEKSIVAWNS-LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFV 212

Query: 633 SLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQ-----NNHLSSAIV-LFK 686
           SL+    Q                    WV       +Y +      N  L +A++ L+ 
Sbjct: 213 SLLSACAQTGAVSLGS------------WVH------QYIISEGLDLNVKLGTALINLYS 254

Query: 687 QLKDKFESDEI--QLEVLFDSVFSVIASSKSTHL--QFGLDLLWAIKDEIGLIPSRQSLD 742
           +  D  ++ E+  +++    + ++ + S+  TH   Q  ++L   ++D+ G IP+  +  
Sbjct: 255 RCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFV 314

Query: 743 FLLSACANAGDLNNARLIWR 762
            +LSACA+AG +   R +++
Sbjct: 315 AVLSACAHAGLVEEGRSVYK 334



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 7/132 (5%)

Query: 453 LGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGL 512
            GL+  +  +LV F+ +  D +GA ++ + + + + +     +N+++ G+ +       +
Sbjct: 138 FGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVA----WNSLVSGFEQNGLADEAI 193

Query: 513 SVLKHMREANVKPDSQTFSYLITNCQSEEDII--KYYEELKLS-GIQATKQIFMALINAY 569
            V   MRE+  +PDS TF  L++ C     +    +  +  +S G+    ++  ALIN Y
Sbjct: 194 QVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLY 253

Query: 570 AACGEFEKAKQV 581
           + CG+  KA++V
Sbjct: 254 SRCGDVGKAREV 265


>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 |
           chr3:4057027-4059193 REVERSE LENGTH=694
          Length = 694

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           L++      D   A ++ +DL +    P    +NAI+ GY R  +    L +  +M+ A 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFP----WNAIIRGYSRNNHFQDALLMYSNMQLAR 114

Query: 523 VKPDSQTFSYLITNCQ--SEEDIIKY-YEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
           V PDS TF +L+  C   S   + ++ + ++   G  A   +   LI  YA C     A+
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 580 QVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELT 639
            V     +P + +    ++ +SA A + +  EAL I+ +++K  +  +  A++S++   T
Sbjct: 175 TVFEGLPLPERTIVSWTAI-VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFT 233


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 15/268 (5%)

Query: 373 KVENLHEVLDVLPS--MSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH 430
           K E  + VL+ +P+  +  +  +I     L + + A+ +  +M ++G  LS++ + S++ 
Sbjct: 295 KEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVA 354

Query: 431 ICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIP 490
            C +   + L   ++  + RH   L+     SL+  + +      +  + E + + + + 
Sbjct: 355 SCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVS 414

Query: 491 TAAMYNAIMGGYFREKNISGGLSVLKHMREANVKP-DSQTFSYLITNCQSEE--DIIKYY 547
               +NAI+ GY +  ++   L + + M+   V+  DS T   L+  C S     + K  
Sbjct: 415 ----WNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLI 470

Query: 548 EELKL-SGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASH 606
             + + S I+    +  AL++ Y+ CG  E A Q   DS      +     +LI+    H
Sbjct: 471 HCIVIRSFIRPCSLVDTALVDMYSKCGYLE-AAQRCFDSISWKDVVSW--GILIAGYGFH 527

Query: 607 KQLPEALLIYEEVKKAGLGVEPKAVISL 634
            +   AL IY E   +G+  EP  VI L
Sbjct: 528 GKGDIALEIYSEFLHSGM--EPNHVIFL 553



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 8/150 (5%)

Query: 495 YNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI----TNCQSEEDIIKYYEEL 550
           +N ++ GY    N+S  L +L  MR   ++PD QTF   +    T C  E   + + + +
Sbjct: 213 WNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIV 272

Query: 551 KLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLP 610
           K +G      +  ALI  Y  CG+ E+A   VL++ +P+K +    +V+IS L    +  
Sbjct: 273 K-TGFDVDMHLKTALITMYLKCGK-EEASYRVLET-IPNKDV-VCWTVMISGLMRLGRAE 328

Query: 611 EALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
           +AL+++ E+ ++G  +  +A+ S++    Q
Sbjct: 329 KALIVFSEMLQSGSDLSSEAIASVVASCAQ 358


>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
           chr2:16381647-16384250 FORWARD LENGTH=867
          Length = 867

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 18/250 (7%)

Query: 386 SMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEET-YDYIL--V 441
           S +SY  +I     +   D+AV+   +M E G + +     S+++  C+    D  L   
Sbjct: 589 SCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMT 648

Query: 442 HRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGG 501
           H + S+     L L+     +L+  F +  D K AY +  +L ++  +P  ++YN+++ G
Sbjct: 649 HEMKSM----ELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISG 704

Query: 502 YFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQAT 558
           +     +   + + K M    +  D  T++ +I     + +I      Y EL   GI   
Sbjct: 705 FRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPD 764

Query: 559 KQIFMALINAYAACGEFEKAKQVVLDSE----VPHKYLHEIKSVLISALASHKQLPEALL 614
           + + M L+N  +  G+F KA +++ + +     P+  L+   S +I+       L EA  
Sbjct: 765 EILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLY---STVIAGHHREGNLNEAFR 821

Query: 615 IYEEVKKAGL 624
           +++E+ + G+
Sbjct: 822 LHDEMLEKGI 831



 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 72/155 (46%)

Query: 381 LDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYIL 440
           L ++P++S Y  LI     L K+D A+D+  KM   G +       +++    +  +  L
Sbjct: 689 LGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINL 748

Query: 441 VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
              +YS +    +  +  +   LV    +   F  A KM+E+++K +  P   +Y+ ++ 
Sbjct: 749 ASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIA 808

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT 535
           G+ RE N++    +   M E  +  D   F+ L++
Sbjct: 809 GHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS 843



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/451 (16%), Positives = 174/451 (38%), Gaps = 58/451 (12%)

Query: 355 IASFAVSIPNLAAEDII---VKVENLHEVLDVL---------PSMSSYKKLIQYCCGLLK 402
           +  F + +  +AA  ++    K   L + LD+          P    +  ++++ C  ++
Sbjct: 336 MVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNME 395

Query: 403 VDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRS 462
           ++ A++   +M       S+ ++ +++  C +         I++      +  +  +C  
Sbjct: 396 MEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA-HGFMCNK 454

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           +   F +      A   ++ +++    P    YN +M  + R KN+    S+   M E  
Sbjct: 455 IFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKG 514

Query: 523 VKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
           ++P++ T+S LI      + E++      ++  S  +A + I+  +IN     G+  KAK
Sbjct: 515 LEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAK 574

Query: 580 QVVLDSEVPHKYLHEIKSV--LISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEE 637
           +++ +     +Y     S   +I           A+  Y E+ + G         SLI  
Sbjct: 575 EMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLIN- 633

Query: 638 LTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKFESDEI 697
                                            +C ++N +  A+ +  ++K    S E+
Sbjct: 634 --------------------------------GFC-KSNRMDLALEMTHEMK----SMEL 656

Query: 698 QLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNA 757
           +L++       +    K   ++    L   +  E+GL+P+    + L+S   N G ++ A
Sbjct: 657 KLDLPAYGAL-IDGFCKKNDMKTAYTLFSELP-ELGLMPNVSVYNSLISGFRNLGKMDAA 714

Query: 758 RLIWREYEVAGFPYNVLSYLRMYQALLASGD 788
             ++++    G   ++ +Y  M   LL  G+
Sbjct: 715 IDLYKKMVNDGISCDLFTYTTMIDGLLKDGN 745


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/370 (18%), Positives = 155/370 (41%), Gaps = 52/370 (14%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
            + +F R      A  ++  + K+ + P+    N+++ G+     IS  ++++  M E  
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 523 VKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGE----- 574
            +PD+ TF+ L+          + +   E + + G Q     + A+IN     GE     
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 575 --FEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI 632
               K ++  ++++V       I + +I  L  +K + +A  ++ +++  G+  +     
Sbjct: 236 NLLNKMEKGKIEADVV------IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 633 SLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKF 692
            LI  L                      W D   R++   ++ N ++  +V F  L D F
Sbjct: 290 PLISCLCNYGR-----------------WSDAS-RLLSDMLEKN-INPDLVFFNALIDAF 330

Query: 693 --ESDEIQLEVLFDSVFS-------VIASS-------KSTHLQFGLDLLWAIKDEIGLIP 736
             E   ++ E L+D +         V+A +       K   ++ G+++   +    GL+ 
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR-GLVG 389

Query: 737 SRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLML 796
           +  +   L+     A D +NA++++++    G   ++++Y  +   L  +G+  +A ++ 
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449

Query: 797 KKIPKDDMEV 806
           + + K DM++
Sbjct: 450 EYMQKRDMKL 459



 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/432 (19%), Positives = 179/432 (41%), Gaps = 34/432 (7%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHIC----EETYDYIL 440
           PS+ +   L+   C   ++  AV +VD+M E G+   T    +++H      + +    L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 441 VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
           V R+    C+  L     +   L     +  +   A  ++  ++K        +YN I+ 
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGL----CKRGEPDLALNLLNKMEKGKIEADVVIYNTIID 258

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIKYYEELKLSGIQA 557
           G  + K++     +   M    +KPD  T++ LI+   N     D  +   ++    I  
Sbjct: 259 GLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP 318

Query: 558 TKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHE---IKSVLISALASHKQLPEALL 614
               F ALI+A+   G+  +A++ + D  V  K+        + LI     +K++ E + 
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEK-LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGME 377

Query: 615 IYEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCF-RVIKYCV 673
           ++ E+ + GL        +LI    Q                      DG    ++ Y +
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS------DGVHPDIMTYNI 431

Query: 674 ------QNNHLSSAIVLFKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWA 727
                  N ++ +A+V+F+ ++ +    +++L+++  +   + A  K+  ++ G DL  +
Sbjct: 432 LLDGLCNNGNVETALVVFEYMQKR----DMKLDIVTYTTM-IEALCKAGKVEDGWDLFCS 486

Query: 728 IKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASG 787
           +  + G+ P+  +   ++S     G    A  ++ E +  G   N  +Y  + +A L  G
Sbjct: 487 LSLK-GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDG 545

Query: 788 DHRSANLMLKKI 799
           D  ++  ++K++
Sbjct: 546 DEAASAELIKEM 557


>AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 34/255 (13%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDY-ILVHRIYSI 447
           SY  LI  CCG  K+D A   +D+M + G                + Y Y IL+  ++++
Sbjct: 542 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLK-------------PDNYTYSILICGLFNM 588

Query: 448 I-----------CRHHLGLNNEICRS-LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMY 495
                       C+ +  L +    S ++    + +  +   +  +++   N  P   +Y
Sbjct: 589 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 648

Query: 496 NAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN---CQSEEDIIKYYEELKL 552
           N ++  Y R   +S  L + + M+   + P+S T++ LI         E+    +EE+++
Sbjct: 649 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM 708

Query: 553 SGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK---SVLISALASHKQL 609
            G++     + ALI+ Y   G+  K +   L  E+  K +H  K   +V+I   A    +
Sbjct: 709 EGLEPNVFHYTALIDGYGKLGQMVKVE--CLLREMHSKNVHPNKITYTVMIGGYARDGNV 766

Query: 610 PEALLIYEEVKKAGL 624
            EA  +  E+++ G+
Sbjct: 767 TEASRLLNEMREKGI 781



 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 10/250 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P       LI   C   K   A+++  +    GF + T+   ++LH   E        RI
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
              I      ++     +L+      K    A+  ++++ K    P    Y+ ++ G F 
Sbjct: 528 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 587

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQI 561
              +   +      +   + PD  T+S +I  C   +  E+  ++++E+    +Q    +
Sbjct: 588 MNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 647

Query: 562 FMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV---LISALASHKQLPEALLIYEE 618
           +  LI AY   G    A +  L  ++ HK +    +    LI  ++   ++ EA L++EE
Sbjct: 648 YNHLIRAYCRSGRLSMALE--LREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 619 VKKAGLGVEP 628
           ++  GL  EP
Sbjct: 706 MRMEGL--EP 713


>AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 34/255 (13%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDY-ILVHRIYSI 447
           SY  LI  CCG  K+D A   +D+M + G                + Y Y IL+  ++++
Sbjct: 542 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLK-------------PDNYTYSILICGLFNM 588

Query: 448 I-----------CRHHLGLNNEICRS-LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMY 495
                       C+ +  L +    S ++    + +  +   +  +++   N  P   +Y
Sbjct: 589 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 648

Query: 496 NAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN---CQSEEDIIKYYEELKL 552
           N ++  Y R   +S  L + + M+   + P+S T++ LI         E+    +EE+++
Sbjct: 649 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM 708

Query: 553 SGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK---SVLISALASHKQL 609
            G++     + ALI+ Y   G+  K +   L  E+  K +H  K   +V+I   A    +
Sbjct: 709 EGLEPNVFHYTALIDGYGKLGQMVKVE--CLLREMHSKNVHPNKITYTVMIGGYARDGNV 766

Query: 610 PEALLIYEEVKKAGL 624
            EA  +  E+++ G+
Sbjct: 767 TEASRLLNEMREKGI 781



 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 10/250 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P       LI   C   K   A+++  +    GF + T+   ++LH   E        RI
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
              I      ++     +L+      K    A+  ++++ K    P    Y+ ++ G F 
Sbjct: 528 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 587

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQI 561
              +   +      +   + PD  T+S +I  C   +  E+  ++++E+    +Q    +
Sbjct: 588 MNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 647

Query: 562 FMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV---LISALASHKQLPEALLIYEE 618
           +  LI AY   G    A +  L  ++ HK +    +    LI  ++   ++ EA L++EE
Sbjct: 648 YNHLIRAYCRSGRLSMALE--LREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 619 VKKAGLGVEP 628
           ++  GL  EP
Sbjct: 706 MRMEGL--EP 713


>AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16915860-16918238 FORWARD
           LENGTH=709
          Length = 709

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 47/286 (16%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAG----FTLSTQVLQSILHICEETYDYILVHRI 444
           +Y  LI  C     ++ A++++ KM + G    F   + V+QS+        D +++ R+
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTR--SNKIDSVMLLRL 256

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMI------------------------ 480
           Y  I R  L L+ ++   ++  F +  D   A +++                        
Sbjct: 257 YKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALAD 316

Query: 481 -----------EDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQT 529
                      E+L++    P    YNA++ GY +   +    S++  M +  V PD  T
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376

Query: 530 FSYLI---TNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLD-S 585
           +S LI    N    E      +E++   +Q    +F  L+  +   GE++K  QV+ +  
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436

Query: 586 EVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAV 631
            +  K   +  +V+I        L  A+  ++ +     G+EP  V
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE--GIEPDRV 480



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 476 AYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI- 534
           A +M E +++   +P A  YN ++  Y  ++       +L  M+   + P+  T + L+ 
Sbjct: 498 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 557

Query: 535 --TNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV--VLDSEVPHK 590
                    D I+  EE+K  G++ +  ++ ALINAYA  G  E+A     V+ S+    
Sbjct: 558 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 617

Query: 591 YLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAV 631
            L  + S LI+A    ++  EA  + + +K+   GV+P  V
Sbjct: 618 SLLALNS-LINAFGEDRRDAEAFAVLQYMKEN--GVKPDVV 655



 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 440 LVHRIYSIICRHHLGLNNEICRS-LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAI 498
           L + + S + +H+L  + E+  S L++   R +    A+ +    QK    P    YNA+
Sbjct: 149 LAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLS---QKQTLTPLT--YNAL 203

Query: 499 MGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI-----IKYYEELKLS 553
           +G   R  +I   L+++  MR+   + D   +S +I +      I     ++ Y+E++  
Sbjct: 204 IGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERD 263

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV-LISALASHKQLPEA 612
            ++   Q+   +I  +A  G+  KA Q++  ++           V +ISALA   +  EA
Sbjct: 264 KLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEA 323

Query: 613 LLIYEEVKKAGLGVEPKAVISLIE 636
             ++EE++++G+    +A  +L++
Sbjct: 324 EALFEELRQSGIKPRTRAYNALLK 347


>AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810072 REVERSE
           LENGTH=613
          Length = 613

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 13/271 (4%)

Query: 321 IFQALGRLQLESDAENLLLDLRASDQDP--DDISNFIASFAVSIPNLAAEDIIVKVENLH 378
           +  A G+     +AE+L + L  S   P  D  +  I ++ ++     AE ++V+++N H
Sbjct: 183 LIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQN-H 241

Query: 379 EVLDVLPSMSSYKKLIQYCCGLLK----VDTAVDIVDKMCEAGFTLSTQVLQSILHICEE 434
            V      ++ Y   I+   GL+K     + A+D+  +M       +T+    ++++  +
Sbjct: 242 HVSPKTIGVTVYNAYIE---GLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGK 298

Query: 435 TYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAM 494
                +  ++Y  +  H    N     +LV  F R    + A ++ E LQ+    P   +
Sbjct: 299 ASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYV 358

Query: 495 YNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI---TNCQSEEDIIKYYEELK 551
           YNA+M  Y R     G   +   M+    +PD  +++ ++          D    +EE+K
Sbjct: 359 YNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMK 418

Query: 552 LSGIQATKQIFMALINAYAACGEFEKAKQVV 582
             GI  T +  M L++AY+   +  K + +V
Sbjct: 419 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 449


>AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=599
          Length = 599

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 144/344 (41%), Gaps = 44/344 (12%)

Query: 320 NIFQALGRLQLESDAENLLLDLRASDQDP--DDISNFIASFAVS-IPNLAAE--DIIVKV 374
           N F   G ++   DA   LL ++    +P     +  I  + ++  P  ++E  D++++ 
Sbjct: 123 NAFSESGNME---DAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179

Query: 375 ENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEE 434
            N+    DV P++ ++  L+Q  C   KV+ A ++V KM E G    T    +I     +
Sbjct: 180 GNV----DVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 435 TYDYILVHR--IYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
             + +      +  ++ +     N   C  +V  + R    +   + +  +++M      
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANL 295

Query: 493 AMYNAIMGGY--------------------FREK-----NISGGLSVLKHMREANVKPDS 527
            ++N+++ G+                    F E+     N    + VL  M+E NVK D 
Sbjct: 296 VVFNSLINGFVEVMDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQVLTLMKECNVKADV 355

Query: 528 QTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLD 584
            T+S ++    S    E   + ++E+  +G++     +  L   Y    E +KA++++  
Sbjct: 356 ITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLET 415

Query: 585 SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
             V  +    I + +IS   S+  + +A+ ++ ++ K   GV P
Sbjct: 416 LIVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCK--FGVSP 457


>AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:16599976-16605994 REVERSE
           LENGTH=1089
          Length = 1089

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 117/286 (40%), Gaps = 21/286 (7%)

Query: 483 LQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED 542
             K+   PT + +N +M      ++I G   VL+ ++E+ +  D + ++ LI++C     
Sbjct: 458 FTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGK 517

Query: 543 IIKYYE---ELKLSGIQATKQIFMALINAYAACGEFEKAKQV--VLDSE--VPHKYLHEI 595
           +   +E   ++  SG++A    F ALI+  A  G+  KA     +L S+   P + +   
Sbjct: 518 VDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVF-- 575

Query: 596 KSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXX 655
            + LISA      +  A  +  E+K     ++P   IS+   +                 
Sbjct: 576 -NALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ISIGALMKACCNAGQVERAKEVYQ 633

Query: 656 XXXDYWVDGCFRV----IKYCVQNNHLSSAIVLFKQLKDKFESDEIQLEVLFDSVFSVIA 711
               Y + G   V    +  C ++     A  ++K +K+K   D    EV F ++  V  
Sbjct: 634 MIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEK---DVTPDEVFFSALIDVAG 690

Query: 712 SSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNA 757
            +K     FG  +L   K + G+     S   L+ AC NA D   A
Sbjct: 691 HAKMLDEAFG--ILQDAKSQ-GIRLGTISYSSLMGACCNAKDWKKA 733



 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 102/246 (41%), Gaps = 6/246 (2%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P+MS++  L+  C     ++ A  ++  + E+G T   ++  +++  C ++     +  +
Sbjct: 465 PTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEV 524

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           +  +    +  N     +L+    R      A+     L+  N  P   ++NA++    +
Sbjct: 525 FHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQ 584

Query: 505 EKNISGGLSVLKHMREAN--VKPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQATK 559
              +     VL  M+     + PD  +   L+  C +    E   + Y+ +   GI+ T 
Sbjct: 585 SGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTP 644

Query: 560 QIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEI-KSVLISALASHKQLPEALLIYEE 618
           +++   +N+ +  G+++ A  +  D +       E+  S LI      K L EA  I ++
Sbjct: 645 EVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQD 704

Query: 619 VKKAGL 624
            K  G+
Sbjct: 705 AKSQGI 710


>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6204940-6209691 REVERSE
           LENGTH=1440
          Length = 1440

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/231 (18%), Positives = 103/231 (44%), Gaps = 37/231 (16%)

Query: 414 CEAGFTL-STQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKD 472
           C  G+   S+ + +++LH C     Y    +++S +       +  +C+S+V  + +L  
Sbjct: 672 CVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGF 731

Query: 473 FKGAYKMIEDLQKMNF-IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFS 531
            + A++++   +   F    + MY  I+  Y ++K      SV+ ++R++   PD +T++
Sbjct: 732 PETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWN 791

Query: 532 YLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV--VLDSEVPH 589
                                           +L++AYA CG +E+A+ +   +  + P 
Sbjct: 792 --------------------------------SLMSAYAQCGCYERARAIFNTMMRDGPS 819

Query: 590 KYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
             +  I ++L+ AL    +L E  ++ EE++  G  +   +++ +++   +
Sbjct: 820 PTVESI-NILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFAR 869



 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 119/275 (43%), Gaps = 19/275 (6%)

Query: 369  DIIVKVENLHEVLDV---------LPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFT 419
            D   +  N+ EV  +         LP++  Y+ +I+  C   +V  A  +V +M EA F 
Sbjct: 865  DAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFK 924

Query: 420  LSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKM 479
            +   +  S+L +     DY    ++Y  I    L  +     +L+  + R +  +  Y +
Sbjct: 925  VELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLL 984

Query: 480  IEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---N 536
            ++ ++ +   P    Y +++  + ++K +     + + +    +K D   +  ++    +
Sbjct: 985  MQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRD 1044

Query: 537  CQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV---VLDSEVPHKYLH 593
              S+    K  + +K +GI+ T      L+ +Y++ G  ++A++V   + D+EV    L 
Sbjct: 1045 SGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP 1104

Query: 594  EIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
               S +I A    K     +    E+KK GL  EP
Sbjct: 1105 --YSSVIDAYLRSKDYNSGIERLLEMKKEGL--EP 1135


>AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810164 REVERSE
           LENGTH=591
          Length = 591

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 13/271 (4%)

Query: 321 IFQALGRLQLESDAENLLLDLRASDQDP--DDISNFIASFAVSIPNLAAEDIIVKVENLH 378
           +  A G+     +AE+L + L  S   P  D  +  I ++ ++     AE ++V+++N H
Sbjct: 161 LIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQN-H 219

Query: 379 EVLDVLPSMSSYKKLIQYCCGLLK----VDTAVDIVDKMCEAGFTLSTQVLQSILHICEE 434
            V      ++ Y   I+   GL+K     + A+D+  +M       +T+    ++++  +
Sbjct: 220 HVSPKTIGVTVYNAYIE---GLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGK 276

Query: 435 TYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAM 494
                +  ++Y  +  H    N     +LV  F R    + A ++ E LQ+    P   +
Sbjct: 277 ASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYV 336

Query: 495 YNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI---TNCQSEEDIIKYYEELK 551
           YNA+M  Y R     G   +   M+    +PD  +++ ++          D    +EE+K
Sbjct: 337 YNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMK 396

Query: 552 LSGIQATKQIFMALINAYAACGEFEKAKQVV 582
             GI  T +  M L++AY+   +  K + +V
Sbjct: 397 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 427


>AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:3911388-3913838 FORWARD LENGTH=816
          Length = 816

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/437 (19%), Positives = 167/437 (38%), Gaps = 52/437 (11%)

Query: 385 PSMSSYKKLIQYCCGLLK---VDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILV 441
           PS+ ++  L++   GL K   V+ A +++ +M + GF         +             
Sbjct: 282 PSLITFNTLLK---GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAA 338

Query: 442 HRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGG 501
             +Y       + +N   C  L+    +    + A +++        +P   +YN ++ G
Sbjct: 339 LGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDG 398

Query: 502 YFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQ--SEEDIIKYYEELKLSGIQAT 558
           Y R+ ++ G    ++ M +  +KPD   ++ LI   C+    E+  K   ++KL G+  +
Sbjct: 399 YCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPS 458

Query: 559 KQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK-SVLISALASHKQLPEALLIYE 617
            + +  LI  Y    EF+K   ++ + E      + +    LI+ L    +L EA ++  
Sbjct: 459 VETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKR 518

Query: 618 EVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNH 677
           +++    GV PK  I                          +  +DG       C     
Sbjct: 519 DMEDR--GVSPKVRI-------------------------YNMLIDG-------CCSKGK 544

Query: 678 LSSAIVLFKQ-LKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIP 736
           +  A    K+ LK   E + +    L D +      S +  L    DLL  I  + GL P
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGL------SMTGKLSEAEDLLLEISRK-GLKP 597

Query: 737 SRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLML 796
              + + L+S    AG++     ++ E + +G    + +Y  +       G   +  L  
Sbjct: 598 DVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFG 657

Query: 797 KKIPKDDMEVCSVILSC 813
           +   K D+ V + +L C
Sbjct: 658 EMSLKPDLLVYNGVLHC 674



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 28/259 (10%)

Query: 382 DVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSIL-HIC-------- 432
           D  PS   Y K IQ    L  V   +++ ++M       S  +   ++  +C        
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233

Query: 433 EETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
           E+ +D +L  R+   +  ++         +L+  + +  + + ++K+ E ++  +  P+ 
Sbjct: 234 EQLFDEMLARRLLPSLITYN---------TLIDGYCKAGNPEKSFKVRERMKADHIEPSL 284

Query: 493 AMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED---IIKYYEE 549
             +N ++ G F+   +    +VLK M++    PD+ TFS L     S E     +  YE 
Sbjct: 285 ITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYET 344

Query: 550 LKLSGIQATKQIFMALINAYAACGEFEKAKQV----VLDSEVPHKYLHEIKSVLISALAS 605
              SG++        L+NA    G+ EKA+++    +    VP++ ++   + +I     
Sbjct: 345 AVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIY---NTMIDGYCR 401

Query: 606 HKQLPEALLIYEEVKKAGL 624
              L  A +  E ++K G+
Sbjct: 402 KGDLVGARMKIEAMEKQGM 420


>AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4227975-4229630 REVERSE
           LENGTH=551
          Length = 551

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 106/243 (43%), Gaps = 9/243 (3%)

Query: 351 ISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIV 410
           + +F A  +  + +   ++ +   + L E L + P + +Y  +I+  C    +D  + I 
Sbjct: 157 VKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIF 216

Query: 411 DKMCEAGFTLSTQVLQSILHICEETYD---YILVHRIYSIICRHHLGLNNEICRSLVYFF 467
           +++ + GF        ++L   EE Y    ++   RI+ ++   +L  N     S V   
Sbjct: 217 EELEKNGFEPDLISFNTLL---EEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273

Query: 468 VRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDS 527
            R K F  A  +I+ ++     P    YNA++  Y  + N+   +     M+E  + PD+
Sbjct: 274 TRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDT 333

Query: 528 QTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLD 584
            T+  LI     + D+   ++  EE     + +   ++  ++      G+ ++A Q+V +
Sbjct: 334 VTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKN 393

Query: 585 SEV 587
            ++
Sbjct: 394 GKL 396


>AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2014440-2015942 REVERSE
           LENGTH=500
          Length = 500

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)

Query: 332 SDAENLLLDLRASDQDPDDISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYK 391
           +DA  L  D+  S   P  I +F +   ++I  L   + ++ +    E+L +   + S+ 
Sbjct: 61  NDALTLFCDMAESHPLPS-IVDF-SRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 392 KLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRH 451
            LI   C   ++  A+  + KM + GF  S     S                        
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGS------------------------ 154

Query: 452 HLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGG 511
                      LV  F  +  F  A  +++ +  + + P   +YN I+     +  ++  
Sbjct: 155 -----------LVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTA 203

Query: 512 LSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIKYYEELKLSGIQATKQIFMALINA 568
           L VLKHM++  ++PD  T++ LIT   +  +     +   ++   GI      F ALI+ 
Sbjct: 204 LDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDV 263

Query: 569 YAACGEFEKAK----QVVLDSEVPHKYLHEIKSVLISALASHKQLPEA 612
           Y   G+  +AK    +++  S  P+   +   + LI+ L  H  L EA
Sbjct: 264 YGKEGQLLEAKKQYNEMIQRSVNPNIVTY---NSLINGLCIHGLLDEA 308


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 135/322 (41%), Gaps = 24/322 (7%)

Query: 446 SIICRHHLGLNNE-----ICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
           ++ICRH L  N       +   L+  +V+      A+++ + + + N I    M +A   
Sbjct: 81  NLICRH-LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISA--- 136

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQ 560
            Y + K     L +L  M   NV+P+  T+S ++ +C    D+   +  +   G+++   
Sbjct: 137 -YSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVF 195

Query: 561 IFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVK 620
           +  ALI+ +A  GE E A   V D  V    +  + + +I   A + +   AL +++ +K
Sbjct: 196 VRSALIDVFAKLGEPEDALS-VFDEMVTGDAI--VWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 621 KAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSS 680
           +AG   E   + S++   T                      +     V  YC +   L  
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYC-KCGSLED 311

Query: 681 AIVLFKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQS 740
           A+ +F Q+K   E D I    +   +      +++ + Q  L L   +K   G  P+  +
Sbjct: 312 ALRVFNQMK---ERDVITWSTMISGL------AQNGYSQEALKLFERMKSS-GTKPNYIT 361

Query: 741 LDFLLSACANAGDLNNARLIWR 762
           +  +L AC++AG L +    +R
Sbjct: 362 IVGVLFACSHAGLLEDGWYYFR 383


>AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:5434142-5436244 FORWARD
           LENGTH=642
          Length = 642

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 5/204 (2%)

Query: 383 VLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVH 442
           V PS  +Y  LI   C   +V+ A+ ++++M E GF        S+++   +   Y   +
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464

Query: 443 RIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGY 502
            ++  +  +   +++ +   ++  F +      A  +  +++     P    YNA+M G 
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 503 FREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI----IKYYEELKLSGIQAT 558
            +   I+   S+L+ M E   + D  + + +I N  +   +    I+ +E +K SGI+  
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHN-IILNGFARTGVPRRAIEMFETIKHSGIKPD 583

Query: 559 KQIFMALINAYAACGEFEKAKQVV 582
              +  L+  +A  G FE+A +++
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMM 607


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 103/533 (19%), Positives = 222/533 (41%), Gaps = 83/533 (15%)

Query: 147 LGSKATVEVFGHLGRETGLKEYNKLIQLCVKKARGADDEDIAIEEL----------SKAF 196
           L    ++E+F   G + G +    + Q+ + K  GA+ E   I+ L           K  
Sbjct: 89  LNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKL-GANGEFKTIDRLLIQMKDEGIVFKES 147

Query: 197 HLLKLMREY---GFPLGEQTYRPILQ----YLIDLGMVREFELFSDVIKAENASSTSRLG 249
             + +MR+Y   GFP   QT R +L+    Y  +    + + +  +++ + N    +   
Sbjct: 148 LFISIMRDYDKAGFP--GQTTRLMLEMRNVYSCE-PTFKSYNVVLEILVSGNCHKVAANV 204

Query: 250 YYEMM----------------LWLGVNHEE----MIRDICEYITVEDSEDTTALRESYLL 289
           +Y+M+                 +  VN  +    ++RD+ ++  V +S     + ++ + 
Sbjct: 205 FYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNS----VIYQTLIH 260

Query: 290 ALCESDRKTQILDVLKNIDITK-LTSVESRSNIFQALGRLQLESDAENLLLDLRASDQDP 348
           +L + +R  + L +L+ + +   +   E+ +++   L +    ++A  ++  +      P
Sbjct: 261 SLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAP 320

Query: 349 DDIS-NFIASFAVSIPNL-AAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTA 406
           DDI+  ++ +    I  + AA+D+  ++          P +  +  LI       ++D A
Sbjct: 321 DDITYGYLMNGLCKIGRVDAAKDLFYRIPK--------PEIVIFNTLIHGFVTHGRLDDA 372

Query: 407 VDIVDKMCEAGFTLSTQVLQSILHICEETYDYI---LVHRIYSIICRHHLGLNNEICRSL 463
             ++  M       S  ++  +       Y Y    LV     ++  H +   N+ C+  
Sbjct: 373 KAVLSDM-----VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL--HDM--RNKGCKPN 423

Query: 464 VY-------FFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLK 516
           VY        F +L     AY ++ ++      P    +N ++  + +E  I   + + +
Sbjct: 424 VYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFR 483

Query: 517 HMREANVKPDSQTFSYLITN-CQSEEDIIKY----YEELKLSGIQATKQIFMALINAYAA 571
            M     KPD  TF+ LI+  C+ +E  IK+      ++   G+ A    +  LINA+  
Sbjct: 484 EMPRKGCKPDVYTFNSLISGLCEVDE--IKHALWLLRDMISEGVVANTVTYNTLINAFLR 541

Query: 572 CGEFEKAKQVVLDSEVPHKYLHEIK-SVLISALASHKQLPEALLIYEEVKKAG 623
            GE ++A+++V +       L EI  + LI  L    ++ +A  ++E++ + G
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594


>AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15118696-15120537 REVERSE
           LENGTH=613
          Length = 613

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 110/252 (43%), Gaps = 13/252 (5%)

Query: 389 SYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEE-TYDYILVHRIYSI 447
           S+  +I  C      +  VD+   M       +   L S+L  C E  Y   LV  I+  
Sbjct: 218 SWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGF 277

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
             RH    +  +  + +  + R  +   +  + E  +    +    M+++++ GY    +
Sbjct: 278 SFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSK----VRDVVMWSSMISGYAETGD 333

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKY----YEELKLSGIQATKQIFM 563
            S  +++L  MR+  ++ +S T   +++ C +   ++ +    + ++   G  +   +  
Sbjct: 334 CSEVMNLLNQMRKEGIEANSVTLLAIVSAC-TNSTLLSFASTVHSQILKCGFMSHILLGN 392

Query: 564 ALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAG 623
           ALI+ YA CG    A++V    E+  K L    S +I+A   H    EAL I++ + K G
Sbjct: 393 ALIDMYAKCGSLSAAREVFY--ELTEKDLVSWSS-MINAYGLHGHGSEALEIFKGMIKGG 449

Query: 624 LGVEPKAVISLI 635
             V+  A ++++
Sbjct: 450 HEVDDMAFLAIL 461



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 113/265 (42%), Gaps = 27/265 (10%)

Query: 389 SYKKLIQYCC--GLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYS 446
           SY  +I  CC  GLL    A+ ++ +M   GF   ++++ S+L +C        V R++ 
Sbjct: 115 SYCSIINSCCQDGLLY--EAMKLIKEMYFYGFIPKSELVASLLALCTRMGSSSKVARMF- 171

Query: 447 IICRHHLGLNNE-------ICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIM 499
               H L L +E       +  +LV  +++  D   A+ + + ++  N +     + A++
Sbjct: 172 ----HALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVS----WTAMI 223

Query: 500 GGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKL-SGI 555
            G    +N   G+ + + M+  N++P+  T   ++  C        ++K         G 
Sbjct: 224 SGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGC 283

Query: 556 QATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLI 615
            A +++  A +  Y  CG    ++ +   S+V    +    S +IS  A      E + +
Sbjct: 284 HADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMW---SSMISGYAETGDCSEVMNL 340

Query: 616 YEEVKKAGLGVEPKAVISLIEELTQ 640
             +++K G+      +++++   T 
Sbjct: 341 LNQMRKEGIEANSVTLLAIVSACTN 365


>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
           repeat (TPR)-like superfamily protein |
           chr1:5329111-5331711 FORWARD LENGTH=866
          Length = 866

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 18/250 (7%)

Query: 398 CGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNN 457
           C   K++ A+ +++ M E    +   V  +++ +CE         ++YSI       L  
Sbjct: 70  CANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGV 129

Query: 458 EICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKH 517
           E+  + +  FVR  +   A+ +   + + N       +N ++GGY ++      + +   
Sbjct: 130 ELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFS----WNVLVGGYAKQGYFDEAMCLYHR 185

Query: 518 M-REANVKPDSQTFSYLITNCQSEEDIIKYYE---ELKLSGIQATKQIFMALINAYAACG 573
           M     VKPD  TF  ++  C    D+ +  E    +   G +    +  ALI  Y  CG
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 574 EFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP----- 628
           + + A+  +L   +P + +    + +IS    +    E L ++  ++  GL V+P     
Sbjct: 246 DVKSAR--LLFDRMPRRDIISWNA-MISGYFENGMCHEGLELFFAMR--GLSVDPDLMTL 300

Query: 629 KAVISLIEEL 638
            +VIS  E L
Sbjct: 301 TSVISACELL 310


>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29900617-29903127 FORWARD
           LENGTH=836
          Length = 836

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 14/263 (5%)

Query: 386 SMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIY 445
           S ++Y ++IQY     K++ A     K  E+G  + TQ   +++ +            IY
Sbjct: 242 SFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIY 301

Query: 446 SIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFRE 505
             + +    L+      ++    +      A+K+ + +++    P+ +++++++    + 
Sbjct: 302 ESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKA 361

Query: 506 KNISGGLSVLKHMREANVKPDSQTFSYLI---TNCQSEEDIIKYYEELKLSGIQATKQIF 562
             +   + V   M+    +P +  F  LI         +  ++ ++E+K SG +    ++
Sbjct: 362 GRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLY 421

Query: 563 MALINAYAACGEFEKAKQVVLDSE------VPHKYLHEIKSVLISALASHKQLPEALLIY 616
             +I ++A  G+ E A  V  D E       P  Y     S L+   A   Q+  A+ IY
Sbjct: 422 TMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTY-----SCLLEMHAGSGQVDSAMKIY 476

Query: 617 EEVKKAGLGVEPKAVISLIEELT 639
             +  AGL     + ISL+  L 
Sbjct: 477 NSMTNAGLRPGLSSYISLLTLLA 499


>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
           chr4:15403020-15406358 FORWARD LENGTH=1112
          Length = 1112

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/434 (19%), Positives = 169/434 (38%), Gaps = 57/434 (13%)

Query: 192 LSKAFHLLKLMREYGFPLGEQTYRPILQYLIDLGMVRE-FELFSDVIKAENASSTSRLGY 250
           L +A + L+ MRE+GF L   +Y  ++  L+      E  E++  +I      S     Y
Sbjct: 169 LKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQT--Y 226

Query: 251 YEMMLWLGVNHEEMIRDICEYITVEDSEDTTALRES-YLLALC-----ESDRKTQILDVL 304
             +M+ LG       RDI   + +    +T  L+ + Y   +C      + +  +  ++L
Sbjct: 227 SSLMVGLGKR-----RDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281

Query: 305 KNID-----------------ITKLTSVESRSNIFQAL--GRLQLESDAENLLLDLRASD 345
           K +D                 +     ++    +F+ +  GR + +      LLD  + +
Sbjct: 282 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341

Query: 346 QDPDDISNFIASFAVS--IPNLAAEDIIV----KVENLHEVLD---------VLPSMSSY 390
           +D D +  F +       +P++    I+V    K  N  E  D         +LP++ +Y
Sbjct: 342 RDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTY 401

Query: 391 KKLIQYCCGLLKV---DTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSI 447
             LI   CGLL+V   D A+++   M   G   +       +    ++ D +     +  
Sbjct: 402 NTLI---CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
           +    +  N   C + +Y   +    + A ++   L+ +  +P +  YN +M  Y +   
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQIFMA 564
           I   + +L  M E   +PD    + LI      + +    K +  +K   ++ T   +  
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNT 578

Query: 565 LINAYAACGEFEKA 578
           L+      G+ ++A
Sbjct: 579 LLAGLGKNGKIQEA 592



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 476  AYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT 535
            A ++ E +      P  A+YN ++ G+ +        ++ K M +  V+PD +T+S L+ 
Sbjct: 910  AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV- 968

Query: 536  NC----QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEV---- 587
            +C       ++ + Y++ELK SG+      +  +IN        E+A  +VL +E+    
Sbjct: 969  DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA--LVLFNEMKTSR 1026

Query: 588  ---PHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
               P  Y +   + LI  L     + EA  IY E+++AGL  EP
Sbjct: 1027 GITPDLYTY---NSLILNLGIAGMVEEAGKIYNEIQRAGL--EP 1065


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 20/252 (7%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEE-----TYDY 438
           PS+ ++  LI + C    +  A+DI++KM + G   ++     +LH  C+E       +Y
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 439 ILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFK--GAYKMIEDLQKMNFIPTAAMYN 496
           +   R+ S  C   +   N +  +L       KD K   A +++  L      P    YN
Sbjct: 402 L--ERMVSRGCYPDIVTYNTMLTALC------KDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 497 AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLS 553
            ++ G  +       + +L  MR  ++KPD+ T+S L+     E   ++ IK++ E +  
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQ-VVLDSEVPHKYLHEIKSVLISALASHKQLPEA 612
           GI+     F +++       + ++A   +V       K      ++LI  LA      EA
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573

Query: 613 LLIYEEVKKAGL 624
           L +  E+   GL
Sbjct: 574 LELLNELCNKGL 585


>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 |
           chr3:1493684-1495381 REVERSE LENGTH=565
          Length = 565

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 453 LGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGL 512
           +G N  +  SL+  + +  D + A  + + + +   +     +N+I+ GY +  +    L
Sbjct: 247 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVS----WNSIITGYSQNGDAEEAL 302

Query: 513 SVLKHMREANVKPDSQTF-----SYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALIN 567
            +   M +  + PD  TF     + +I  C      I  Y  +  +G      I  AL+N
Sbjct: 303 CMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAY--VSKTGFVKDAAIVCALVN 360

Query: 568 AYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAG 623
            YA  G+ E AK+   D E   K      +V+I  LASH    EAL I++ +++ G
Sbjct: 361 MYAKTGDAESAKKAFEDLE---KKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKG 413


>AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3190594-3192414 REVERSE
           LENGTH=606
          Length = 606

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 46/340 (13%)

Query: 290 ALCESDRKTQILDVLKNIDITKLT-SVESRSNIFQALGRLQLESDAENLLLDLRASDQDP 348
           ALC++ +  +  DV++++ +   + +V S + +    G  +L  + +    D    +   
Sbjct: 232 ALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLID--GYCKLGGNGKMYKADAVLKEMVE 289

Query: 349 DDISNFIASFAVSIPNLAAED-IIVKVENLHEVLD--VLPSMSSYKKLIQYCCGLLKVDT 405
           +D+S  + +F + I     +D +   ++   E+LD  V P++ SY  LI   C   K+  
Sbjct: 290 NDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISE 349

Query: 406 AVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVY 465
           A+ + DKM  AG      V  +++     TY+                        +L+ 
Sbjct: 350 AISMRDKMVSAG------VQPNLI-----TYN------------------------ALIN 374

Query: 466 FFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKP 525
            F +    K A  M   ++    +PT  MYN ++  Y +   I  G ++ + M    + P
Sbjct: 375 GFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVP 434

Query: 526 DSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVV 582
           D  T++ LI   C++   E   K +++L   G+      F  L+  Y   GE  KA  ++
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL-VTFHILMEGYCRKGESRKAAMLL 493

Query: 583 LD-SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKK 621
            + S++  K  H   ++++        L  A  +  +++K
Sbjct: 494 KEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533


>AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19784502-19786808 FORWARD
           LENGTH=768
          Length = 768

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 21/255 (8%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVH-- 442
           P  +S+  +I         D AV +  +M  +GF      L+S+L  C +T    L    
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGM 391

Query: 443 RIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGY 502
           +I+S I +     +  +C SL+  +    D    + + ED +       +  +N I+   
Sbjct: 392 QIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNN---ADSVSWNTILTAC 448

Query: 503 FREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKL----SGIQAT 558
            + +     L + K M  +  +PD  T   L+  C  E   +K   ++      +G+   
Sbjct: 449 LQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC-VEISSLKLGSQVHCYSLKTGLAPE 507

Query: 559 KQIFMALINAYAACGEFEKAKQVV--LDSEVPHKYLHEIKSVLISALASHKQLPEALLIY 616
           + I   LI+ YA CG   +A+++   +D+     +     S LI   A      EAL+++
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSW-----STLIVGYAQSGFGEEALILF 562

Query: 617 EEVKKAGLGVEPKAV 631
           +E+K A  G+EP  V
Sbjct: 563 KEMKSA--GIEPNHV 575


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 125/276 (45%), Gaps = 19/276 (6%)

Query: 365 LAAEDIIVKVENLHEVL---DVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLS 421
           ++ E ++ K + L + +    ++P   +Y  LI+  C    V    +++ +M +    +S
Sbjct: 357 MSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVIS 416

Query: 422 TQVLQSILHICEETYD----YILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAY 477
                +++     + D    Y +V  + +  CR     N  I  +L+  F++   F  A 
Sbjct: 417 PYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP----NVVIYTTLIKTFLQNSRFGDAM 472

Query: 478 KMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC 537
           ++++++++    P    YN+++ G  + K +    S L  M E  +KP++ T+   I+  
Sbjct: 473 RVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGY 532

Query: 538 QSEEDII---KYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHE 594
               +     KY +E++  G+   K +   LIN Y   G+  +A      S V    L +
Sbjct: 533 IEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS-AYRSMVDQGILGD 591

Query: 595 IK--SVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
            K  +VL++ L  + ++ +A  I+ E++  G G+ P
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMR--GKGIAP 625



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 59/332 (17%)

Query: 454 GLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLS 513
           GL NE C+       ++ +   AY+ + D      +  A  Y  +M G F+   +     
Sbjct: 562 GLINEYCKK-----GKVIEACSAYRSMVD---QGILGDAKTYTVLMNGLFKNDKVDDAEE 613

Query: 514 VLKHMREANVKPDSQTFSYLIT------NCQSEEDIIKYYEELKLSGIQATKQIFMALIN 567
           + + MR   + PD  ++  LI       N Q    I   ++E+   G+     I+  L+ 
Sbjct: 614 IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSI---FDEMVEEGLTPNVIIYNMLLG 670

Query: 568 AYAACGEFEKAKQVVLDSEVPHKYLHE---IKSVLISALASHKQLPEALLIYEEVKKAGL 624
            +   GE EKAK+++   E+  K LH        +I        L EA  +++E+K  GL
Sbjct: 671 GFCRSGEIEKAKELL--DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 625 GVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVL 684
             +     +L                           VDGC R+       N +  AI +
Sbjct: 729 VPDSFVYTTL---------------------------VDGCCRL-------NDVERAITI 754

Query: 685 FKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFL 744
           F   K    S       L + VF    +   T +     L+    D  G  P+  + + +
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLN--RLMDGSFDRFGK-PNDVTYNIM 811

Query: 745 LSACANAGDLNNARLIWREYEVAGFPYNVLSY 776
           +      G+L  A+ ++ + + A     V++Y
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 16/220 (7%)

Query: 406 AVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVY 465
           A+D+  KM E GF    + L S+L  C    D      +  +     +GL+  +   L+ 
Sbjct: 217 AMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLIS 276

Query: 466 FFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKP 525
            + +  D   A ++   + K + +   AM       Y +    S    +   M +  V P
Sbjct: 277 MYGKCGDLDSARRVFNQMIKKDRVAWTAMITV----YSQNGKSSEAFKLFFEMEKTGVSP 332

Query: 526 DSQTFSYLITNCQS------EEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
           D+ T S +++ C S       + I  +  EL L   Q    +   L++ Y  CG  E+A 
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQIETHASELSL---QHNIYVATGLVDMYGKCGRVEEAL 389

Query: 580 QVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEV 619
           +V     V ++      + +I+A A      EALL+++ +
Sbjct: 390 RVFEAMPVKNE---ATWNAMITAYAHQGHAKEALLLFDRM 426


>AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:12937253-12938836 REVERSE
           LENGTH=527
          Length = 527

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 17/236 (7%)

Query: 403 VDTAVDIVDKMCEAGFTLS-TQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICR 461
           +D+ +  ++   + G +L+  ++  S+L  C          R++ +I  + L  N  I  
Sbjct: 72  LDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISS 131

Query: 462 SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREA 521
            LV  +      + A+++ + + K +  P A  +N+++ GY         +++   M E 
Sbjct: 132 KLVRLYASCGYAEVAHEVFDRMSKRDSSPFA--WNSLISGYAELGQYEDAMALYFQMAED 189

Query: 522 NVKPDSQTFSYLITNC------QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEF 575
            VKPD  TF  ++  C      Q  E I   + +L   G      +  AL+  YA CG+ 
Sbjct: 190 GVKPDRFTFPRVLKACGGIGSVQIGEAI---HRDLVKEGFGYDVYVLNALVVMYAKCGDI 246

Query: 576 EKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAV 631
            KA+ V     +PHK      S+L   L  H  L EAL I+  + +   G+EP  V
Sbjct: 247 VKARNVF--DMIPHKDYVSWNSMLTGYL-HHGLLHEALDIFRLMVQN--GIEPDKV 297


>AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8894428-8896800 FORWARD
           LENGTH=790
          Length = 790

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 114/289 (39%), Gaps = 52/289 (17%)

Query: 375 ENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEE 434
           E L E +D    + +Y  +I           A+++V +M  +G  L      S++  C  
Sbjct: 239 EELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACAT 298

Query: 435 TYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAM 494
                L  ++++ + R     +     SLV  + +   F  A  + E +   + +     
Sbjct: 299 AGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS---- 353

Query: 495 YNAIMGGY---------------FREKNI-------SG---------GLSVLKHMREANV 523
           +NA++ GY                +EKNI       SG         GL +   M+    
Sbjct: 354 WNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF 413

Query: 524 KPDSQTFSYLITNCQ---SEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQ 580
           +P    FS  I +C    +  +  +Y+ +L   G  ++     ALI  YA CG  E+A+Q
Sbjct: 414 EPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQ 473

Query: 581 V-----VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGL 624
           V      LDS           + LI+AL  H    EA+ +YEE+ K G+
Sbjct: 474 VFRTMPCLDSVS--------WNALIAALGQHGHGAEAVDVYEEMLKKGI 514


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           L+  FV+    + A ++ +++      P    YN +M GY  +  +S   ++L  M    
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 523 VKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAK 579
             PD  TF+ LI   C  +  +D +K +  +   G+ A    +  L+  +   G+ + A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 580 QVVLDSEVPHKYLHEIKS--VLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEE 637
           + +    V H  L ++ +  +L+  L  + +L +AL I+E+++K+ + +      ++IE 
Sbjct: 424 E-LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 638 LTQ 640
           + +
Sbjct: 483 MCK 485


>AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21824233 REVERSE
           LENGTH=583
          Length = 583

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 15/216 (6%)

Query: 378 HEVLDVLPSMSSYKKLIQYCCGL------LKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
             VL VL  M S   +I Y   +       K + A  I  +M  +G   S    Q IL  
Sbjct: 159 ERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKT 218

Query: 432 CEETYDYILVHRIYSIIC---RHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
             E   +     ++  +    +  L  + ++   ++Y + +  +++ A K+   +     
Sbjct: 219 FVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGV 278

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIK 545
             +   YN++M      K +S    +   M+ ++++PD  +++ LI      + EE+ + 
Sbjct: 279 PQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 335

Query: 546 YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV 581
            +EE+  +G++ T + +  L++A+A  G  E+AK V
Sbjct: 336 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTV 371



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/378 (19%), Positives = 154/378 (40%), Gaps = 70/378 (18%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           L+  + +L +F GA +++  L KM   P    Y A+M  Y R    +   ++ + M+ + 
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204

Query: 523 VKPDSQTFSYLITNCQSEEDIIKYYEEL-------KLSGIQATKQIFMALINAYAACGEF 575
            +P + T+  +I     E D  K  EE+       K S ++  ++++  +I  Y   G +
Sbjct: 205 PEPSAITYQ-IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263

Query: 576 EKAKQV---VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI 632
           EKA++V   ++   VP   +    + L+S   S+K++ +   IY++++++   ++P  V 
Sbjct: 264 EKARKVFSSMVGKGVPQSTV--TYNSLMSFETSYKEVSK---IYDQMQRS--DIQPDVVS 316

Query: 633 SLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDK- 691
             +                                +IK   +      A+ +F+++ D  
Sbjct: 317 YAL--------------------------------LIKAYGRARREEEALSVFEEMLDAG 344

Query: 692 FESDEIQLEVLFD--SVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACA 749
                    +L D  ++  ++  +K+       D ++         P   S   +LSA  
Sbjct: 345 VRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIF---------PDLWSYTTMLSAYV 395

Query: 750 NAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDMEVCSV 809
           NA D+  A   ++  +V GF  N+++Y  + +    + D      + +K+    ++    
Sbjct: 396 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQT 455

Query: 810 ILS--------CQNTYSA 819
           IL+        C+N  SA
Sbjct: 456 ILTTIMDASGRCKNFGSA 473


>AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29747102-29748832 REVERSE
           LENGTH=576
          Length = 576

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 142/360 (39%), Gaps = 38/360 (10%)

Query: 195 AFHLLKLMREYGFPLGEQTYRPILQYLIDLGMVREFELFSDVIKAENASSTSRLGYYEMM 254
           A  L++ M ++G+P    TY  +++ L  LG + +   F + +  +  +  +    +   
Sbjct: 160 AMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNA----FTYS 215

Query: 255 LWLGVNHEEMIRD----ICEYITVEDSEDTTALRESYLLALCESDRKTQILDVLKNIDIT 310
             L   ++E   D    + + I V+  E         L   C+  R    + + + +   
Sbjct: 216 FLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAK 275

Query: 311 KL-TSVESRSNIFQAL---GRLQLESDAENLLLDLRASDQDPDDISNFIASFAVSIPNLA 366
               +V S + + + L   GR +   +A +LL ++   D+ P      + ++ + I +LA
Sbjct: 276 GFKANVVSYNILLRCLCCDGRWE---EANSLLAEMDGGDRAPS-----VVTYNILINSLA 327

Query: 367 AEDIIVKVENLHEVLDVLPSMS-----------SYKKLIQYCCGLLKVDTAVDIVDKMCE 415
                       + L VL  MS           SY  +I   C   KVD  V  +D+M  
Sbjct: 328 FHG------RTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIY 381

Query: 416 AGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKG 475
                +     +I  +CE          I   +        ++  +S++    R  +   
Sbjct: 382 RRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFA 441

Query: 476 AYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREA-NVKPDSQTFSYLI 534
           A++++ ++ +  F P A  Y+A++ G   E   +G + VL  M E+ N KP    F+ +I
Sbjct: 442 AFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMI 501


>AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:20459238-20461504 FORWARD
           LENGTH=723
          Length = 723

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS  SY  LI         + A    ++MC+ G   S +   S+L     + D   +  I
Sbjct: 483 PSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEI 542

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           + ++ R  +        +L+  F +   +  A  ++ +  KM   P+   YN +M  Y R
Sbjct: 543 WKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYAR 602

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLI 534
               +    +LK M   N+KPDS T+S +I
Sbjct: 603 GGQDAKLPQLLKEMAALNLKPDSITYSTMI 632


>AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:7939611-7942898 REVERSE
           LENGTH=1064
          Length = 1064

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 384 LPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEA---GFTLSTQVLQSILHICEETYDYIL 440
           L   SS+  +I    GL K +   + +   C+    G   +     S+L  C++     +
Sbjct: 250 LKDHSSWVAMIS---GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 306

Query: 441 VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
             +++ ++ +     +  +C +LV  +  L +   A  +  ++ + +    A  YN ++ 
Sbjct: 307 GEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD----AVTYNTLIN 362

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIK------YYEELKLSG 554
           G  +       + + K M    ++PDS T + L+  C ++  + +      Y  +L   G
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL---G 419

Query: 555 IQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEI 595
             +  +I  AL+N YA C + E A    L++EV +  L  +
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 460


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 45/248 (18%)

Query: 383 VLPSMSSYKKLIQYCC--GLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYIL 440
           + P   +Y  LI  CC  G L  + A  + ++M  AGF+       ++L +  +++    
Sbjct: 275 IAPDAYTYNTLIT-CCKRGSLHQE-AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

Query: 441 VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
             ++ + +  +    +     SL+  + R      A ++   + +    P    Y  ++ 
Sbjct: 333 AMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYL-------------------ITNCQSEE 541
           G+ R   +   +S+ + MR A  KP+  TF+                     I  C    
Sbjct: 393 GFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 452

Query: 542 DIIKY-------------------YEELKLSGIQATKQIFMALINAYAACGEFEKAKQV- 581
           DI+ +                   ++E+K +G    ++ F  LI+AY+ CG FE+A  V 
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512

Query: 582 --VLDSEV 587
             +LD+ V
Sbjct: 513 RRMLDAGV 520



 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 474 KGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYL 533
           K A K++ ++    F P+   YN+++  Y R+  +   + +   M E   KPD  T++ L
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390

Query: 534 ITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHK 590
           ++  +     E  +  +EE++ +G +     F A I  Y   G+F +  ++  +  V   
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450

Query: 591 YLHEIK-SVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
               +  + L++    +    E   +++E+K+AG   E +   +LI   ++
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/467 (17%), Positives = 181/467 (38%), Gaps = 70/467 (14%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHIC----EETYDYIL 440
           P++ +   L+   C   ++  AV +VD+M   G+  +T    +++H      + +    L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 441 VHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMG 500
           + R+ +  C+  L     +   L     +  D   A+ ++  +++    P   +YN I+ 
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLC----KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264

Query: 501 GYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIKYYEELKLSGIQA 557
           G  + K++   L++ K M    ++P+  T+S LI+   N     D  +   ++    I  
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 558 TKQIFMALINAYAACGEFEKAKQV------------------VLDSEVPHKYLHEIK--- 596
               F ALI+A+   G+  +A+++                  +++    H  L E K   
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 597 ---------------SVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIE----- 636
                          + LI     +K++ E + ++ E+ + GL         LI+     
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444

Query: 637 ---ELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQL-KDKF 692
              ++ Q                  +  +DG         +N  L  A+V+F+ L + K 
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG-------LCKNGKLEKAMVVFEYLQRSKM 497

Query: 693 ESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAG 752
           E       ++ + +       K+  ++ G DL   +  + G+ P   + + ++S     G
Sbjct: 498 EPTIYTYNIMIEGM------CKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKG 550

Query: 753 DLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKI 799
               A  +++E +  G   N   Y  + +A L  GD  ++  ++K++
Sbjct: 551 SKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597


>AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11245976-11247763 FORWARD
           LENGTH=595
          Length = 595

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 16/202 (7%)

Query: 443 RIYSIICRHHLGLNN-EICRSLVYFFVRLKD---FKGAYKMIEDLQK-MNFIPTAAMYNA 497
           +I++   RH + +++ E+ + L+++ V L        A+K+   ++K +N      ++N 
Sbjct: 35  QIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVF----IWNT 90

Query: 498 IMGGYFREKNISGGLSVLKHMREAN-VKPDSQTFSYLITNCQSEEDII---KYYEELKLS 553
           ++ GY    N     S+ + MR +  V+PD+ T+ +LI    +  D+      +  +  S
Sbjct: 91  LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEAL 613
           G  +   +  +L++ YA CG+   A +V    ++P K L    SV I+  A + +  EAL
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVF--DKMPEKDLVAWNSV-INGFAENGKPEEAL 207

Query: 614 LIYEEVKKAGLGVEPKAVISLI 635
            +Y E+   G+  +   ++SL+
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLL 229


>AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21823919 REVERSE
           LENGTH=590
          Length = 590

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 115/270 (42%), Gaps = 24/270 (8%)

Query: 378 HEVLDVLPSMSSYKKLIQYCCGL------LKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
             VL VL  M S   +I Y   +       K + A  I  +M  +G   S    Q IL  
Sbjct: 166 ERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKT 225

Query: 432 CEETYDYILVHRIYSIIC---RHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
             E   +     ++  +    +  L  + ++   ++Y + +  +++ A K+   +     
Sbjct: 226 FVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGV 285

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIK 545
             +   YN++M      K +S    +   M+ ++++PD  +++ LI      + EE+ + 
Sbjct: 286 PQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALS 342

Query: 546 YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVV----LDSEVPHKYLHEIKSVLIS 601
            +EE+  +G++ T + +  L++A+A  G  E+AK V      D   P  + +   + ++S
Sbjct: 343 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSY---TTMLS 399

Query: 602 ALASHKQLPEALLIYEEVKKAGLGVEPKAV 631
           A  +   +  A   ++ +K  G   EP  V
Sbjct: 400 AYVNASDMEGAEKFFKRIKVDGF--EPNIV 427



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/378 (19%), Positives = 154/378 (40%), Gaps = 70/378 (18%)

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREAN 522
           L+  + +L +F GA +++  L KM   P    Y A+M  Y R    +   ++ + M+ + 
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211

Query: 523 VKPDSQTFSYLITNCQSEEDIIKYYEEL-------KLSGIQATKQIFMALINAYAACGEF 575
            +P + T+  +I     E D  K  EE+       K S ++  ++++  +I  Y   G +
Sbjct: 212 PEPSAITYQ-IILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 270

Query: 576 EKAKQV---VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI 632
           EKA++V   ++   VP   +    + L+S   S+K++ +   IY++++++   ++P  V 
Sbjct: 271 EKARKVFSSMVGKGVPQSTV--TYNSLMSFETSYKEVSK---IYDQMQRS--DIQPDVVS 323

Query: 633 SLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDK- 691
             +                                +IK   +      A+ +F+++ D  
Sbjct: 324 YAL--------------------------------LIKAYGRARREEEALSVFEEMLDAG 351

Query: 692 FESDEIQLEVLFD--SVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACA 749
                    +L D  ++  ++  +K+       D ++         P   S   +LSA  
Sbjct: 352 VRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIF---------PDLWSYTTMLSAYV 402

Query: 750 NAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDMEVCSV 809
           NA D+  A   ++  +V GF  N+++Y  + +    + D      + +K+    ++    
Sbjct: 403 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQT 462

Query: 810 ILS--------CQNTYSA 819
           IL+        C+N  SA
Sbjct: 463 ILTTIMDASGRCKNFGSA 480


>AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2321740-2324382 REVERSE
           LENGTH=880
          Length = 880

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/409 (18%), Positives = 162/409 (39%), Gaps = 28/409 (6%)

Query: 189 IEELSKAFHLLKLMREYGFPLGEQTYRPILQYLIDLGMV-REFELFSDVIKAENASSTSR 247
           +  L +AF L   M E G     +TY  +++ L D G++ + F LF ++I      +   
Sbjct: 279 VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNV-- 336

Query: 248 LGYYEMMLWLGVNHEEMIRD---ICEYITVEDSEDTTALRESYLLALCESDRKTQILDVL 304
             +   +L  G+  +  I +   +C  +  +    +     + +   C+  R     ++L
Sbjct: 337 --HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL 394

Query: 305 KNIDITKLT-SVESRSNIFQALGRLQLESDAENLLLDLRASDQDPDDISNFIASFAVSIP 363
             ++      +V + + + + L R+     A +LL  +  +   PD     I S+ V I 
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPD-----IVSYNVLID 449

Query: 364 NLAAE---DIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTL 420
            L  E   +   K+ +     D+ P   ++  +I   C   K D A   +  M   G +L
Sbjct: 450 GLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISL 509

Query: 421 ----STQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGA 476
                T ++  +  +  +T D +    I   + +  +         ++    +    K  
Sbjct: 510 DEVTGTTLIDGVCKV-GKTRDALF---ILETLVKMRILTTPHSLNVILDMLSKGCKVKEE 565

Query: 477 YKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN 536
             M+  + K+  +P+   Y  ++ G  R  +I+G   +L+ M+ +   P+   ++ +I  
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIING 625

Query: 537 -CQ--SEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVV 582
            CQ    E+  K    ++ SG+      +  ++  Y   G+ ++A + V
Sbjct: 626 LCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETV 674


>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
           FORWARD LENGTH=681
          Length = 681

 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 428 ILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMN 487
           +  +C +     L H I   + +  L L + +  + ++ F    D + A K+ ++    +
Sbjct: 162 LFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRD 221

Query: 488 FIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIK-- 545
            +     +N ++ GY +       + V K M    VKPD  T   L+++C    D+ +  
Sbjct: 222 LVS----WNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

Query: 546 -YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV 581
            +YE +K +G++ T  +  AL++ ++ CG+  +A+++
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRI 314



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/270 (18%), Positives = 115/270 (42%), Gaps = 20/270 (7%)

Query: 372 VKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHI 431
           + V  L E   V P   +   L+  C  L  ++   +  + + E G  ++  ++ +++ +
Sbjct: 242 IYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDM 301

Query: 432 CEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPT 491
             +  D     RI+  + +  +        +++  + R      + K+ +D+++ + +  
Sbjct: 302 FSKCGDIHEARRIFDNLEKRTI----VSWTTMISGYARCGLLDVSRKLFDDMEEKDVV-- 355

Query: 492 AAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEED------IIK 545
             ++NA++GG  + K     L++ + M+ +N KPD  T  + ++ C           I +
Sbjct: 356 --LWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR 413

Query: 546 YYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALAS 605
           Y E+  LS       +  +L++ YA CG   +A  V    +  +   +   + +I  LA 
Sbjct: 414 YIEKYSLS---LNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY---TAIIGGLAL 467

Query: 606 HKQLPEALLIYEEVKKAGLGVEPKAVISLI 635
           H     A+  + E+  AG+  +    I L+
Sbjct: 468 HGDASTAISYFNEMIDAGIAPDEITFIGLL 497


>AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:28025153-28027840 REVERSE LENGTH=895
          Length = 895

 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 447 IICRHHLGLNN---EICRS-LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGY 502
           ++C H + +     E+  S L+  F +   F+ AYK+  D    N       +N I+ G 
Sbjct: 171 LVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVY----CWNTIIAGA 226

Query: 503 FREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQ-ATKQI 561
            R +N      +   M     KPDS T+S ++  C S E  +++ + ++   I+   + +
Sbjct: 227 LRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEK-LRFGKVVQARVIKCGAEDV 285

Query: 562 FM--ALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEV 619
           F+  A+++ YA CG   +A +V   S +P+  +    +V++S          AL I++E+
Sbjct: 286 FVCTAIVDLYAKCGHMAEAMEVF--SRIPNPSVVSW-TVMLSGYTKSNDAFSALEIFKEM 342

Query: 620 KKAGLGVEPKAVISLI 635
           + +G+ +    V S+I
Sbjct: 343 RHSGVEINNCTVTSVI 358



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 28/209 (13%)

Query: 440 LVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIM 499
           L  +++    +  L L+  +  SL   + +    + +YK+    Q + F   A   + I 
Sbjct: 468 LGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKL---FQGIPFKDNACWASMIS 524

Query: 500 G----GYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYE----ELK 551
           G    GY RE      + +   M +    PD  T + ++T C S   + +  E     L+
Sbjct: 525 GFNEYGYLRE-----AIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLR 579

Query: 552 LSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV----LISALASHK 607
            +GI     +  AL+N Y+ CG  + A+QV       +  L E+  V    LIS  + H 
Sbjct: 580 -AGIDKGMDLGSALVNMYSKCGSLKLARQV-------YDRLPELDPVSCSSLISGYSQHG 631

Query: 608 QLPEALLIYEEVKKAGLGVEPKAVISLIE 636
            + +  L++ ++  +G  ++  A+ S+++
Sbjct: 632 LIQDGFLLFRDMVMSGFTMDSFAISSILK 660


>AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:876258-877547 REVERSE
           LENGTH=429
          Length = 429

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 119/261 (45%), Gaps = 21/261 (8%)

Query: 377 LHEVLDVLPSMSSYKKLIQYCCGLLKVD----TAVDIVDKMCEAGFTLSTQVLQSILHIC 432
           L+E +DV+P+ SS+  +I+   GL+  +     A++   KM E  F  +   L +++  C
Sbjct: 136 LYEAMDVMPNESSFNAIIK---GLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSAC 192

Query: 433 EETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
                + L+  I+S   R+ +  + ++   LV  + R         + + ++  + +   
Sbjct: 193 SAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVA-- 250

Query: 493 AMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQS---EEDIIKYYEE 549
             +++++  Y    +    L   + M  A V PD   F  ++  C      ++ + Y++ 
Sbjct: 251 --WSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKR 308

Query: 550 LKLS-GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQ 608
           ++   G++A+K  +  L++  +  G FE+A +V+    +P K   +    L+ A  ++ +
Sbjct: 309 MQGDYGLRASKDHYSCLVDVLSRVGRFEEAYKVI--QAMPEKPTAKTWGALLGACRNYGE 366

Query: 609 LPEALLIYEEVKKAGLGVEPK 629
           +  A +   E+    L VEP+
Sbjct: 367 IELAEIAAREL----LMVEPE 383


>AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2745208-2747757 REVERSE
           LENGTH=849
          Length = 849

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 99/217 (45%), Gaps = 15/217 (6%)

Query: 397 CCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLN 456
           CC     + A+ +  ++   G   +T  + ++L +C +     LV + +  I R  LG +
Sbjct: 547 CCP----NEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLG-D 601

Query: 457 NEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLK 516
             +  +L+  + +    K AY + +   + + +    M+ A++ GY         L +  
Sbjct: 602 IRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLV----MFTAMVAGYAVHGRGKEALMIYS 657

Query: 517 HMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELK-LSGIQATKQIFMALINAYAAC 572
           HM E+N+KPD    + ++T C      +D ++ Y+ ++ + G++ T + +   ++  A  
Sbjct: 658 HMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARG 717

Query: 573 GEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQL 609
           G  + A   V  +++P +    I   L+ A  ++ ++
Sbjct: 718 GRLDDAYSFV--TQMPVEPNANIWGTLLRACTTYNRM 752


>AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29920334-29922676 REVERSE
           LENGTH=780
          Length = 780

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 467 FVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPD 526
           F +L     A++++   +K  F+     Y++++ G FR +  +    +  +M + N+KPD
Sbjct: 278 FCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPD 337

Query: 527 SQTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVL 583
              ++ LI         ED +K    +   GI      + A+I A    G  E+ + + L
Sbjct: 338 IILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQL 397

Query: 584 D----SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELT 639
           +       P    H   ++LI ++  +  + EA  I+ E++K+G         +LI+ L 
Sbjct: 398 EMSETESFPDACTH---TILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLC 454

Query: 640 Q 640
           +
Sbjct: 455 K 455


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 462 SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREA 521
           SL+  F +   F+ A  +++ +    F+P   +YN ++ G  + ++++  L V   M + 
Sbjct: 154 SLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKK 213

Query: 522 NVKPDSQTFSYLI---TNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA 578
            ++ D+ T++ LI   +N     D  +   ++    I      F ALI+ +   G   +A
Sbjct: 214 GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEA 273

Query: 579 ----KQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAG 623
               K+++  S VP+ + +   + LI+    H  L +A  +++ +   G
Sbjct: 274 RNLYKEMIRRSVVPNVFTY---NSLINGFCIHGCLGDAKYMFDLMVSKG 319


>AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18215788-18217848 REVERSE
           LENGTH=686
          Length = 686

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 157/373 (42%), Gaps = 28/373 (7%)

Query: 434 ETYDYILVHR-IYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTA 492
           +TY  I   R ++S I    L  N+ +   L+  +  LKD   A K+ +++ + N I   
Sbjct: 50  DTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIIN 109

Query: 493 AMYNA-IMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDII---KYYE 548
            M  + +  G++ E     G+ V   M   NV+PD  TF  ++  C     I+   K + 
Sbjct: 110 VMIRSYVNNGFYGE-----GVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHG 164

Query: 549 ELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQ 608
                G+ +T  +   L++ Y  CG   +A+ +VLD E+  + +    S L+   A +++
Sbjct: 165 SATKVGLSSTLFVGNGLVSMYGKCGFLSEAR-LVLD-EMSRRDVVSWNS-LVVGYAQNQR 221

Query: 609 LPEALLIYEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRV 668
             +AL +  E++   +  +   + SL+  ++                      V     +
Sbjct: 222 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMI 281

Query: 669 IKYCVQNNHLSSAIVLFKQLK-DKFESDEIQLEVLFDSVFSVI-ASSKSTHLQFGLDLLW 726
             Y ++N     A+ L+ +++ D FE D +       S+ SV+ A   ++ L  G  +  
Sbjct: 282 GVY-MKNAMPVEAVELYSRMEADGFEPDAV-------SITSVLPACGDTSALSLGKKIHG 333

Query: 727 AIKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAS 786
            I+ +  LIP+    + L+   A  G L  AR ++   +      +V+S+  M  A   S
Sbjct: 334 YIERK-KLIPNLLLENALIDMYAKCGCLEKARDVFENMK----SRDVVSWTAMISAYGFS 388

Query: 787 GDHRSANLMLKKI 799
           G    A  +  K+
Sbjct: 389 GRGCDAVALFSKL 401


>AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2677122-2679179 REVERSE
           LENGTH=685
          Length = 685

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/380 (19%), Positives = 153/380 (40%), Gaps = 35/380 (9%)

Query: 384 LPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHR 443
            P++  Y  LI            +D+   + + G  L       +L  C       L   
Sbjct: 73  FPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132

Query: 444 IYSIICRHHLGLNNEIC--RSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGG 501
           ++S++ +   G N+++    SL+  +        A+K+ +++   + +   A+++    G
Sbjct: 133 LHSLVVK--CGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFS----G 186

Query: 502 YFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC------QSEEDIIKYYEELKLSGI 555
           Y         + + K M E  VKPDS     +++ C       S E I+KY EE+++   
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEM--- 243

Query: 556 QATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLI 615
           Q    +   L+N YA CG+ EKA+  V DS V    +    S +I   AS+    E + +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARS-VFDSMVEKDIV--TWSTMIQGYASNSFPKEGIEL 300

Query: 616 YEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFR---VIKYC 672
           + ++ +  L  +  +++  +                         ++   F    +I   
Sbjct: 301 FLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE--FLTNLFMANALIDMY 358

Query: 673 VQNNHLSSAIVLFKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEI 732
            +   ++    +FK++K+K    +I   V+ ++  S +A +    L F    ++   +++
Sbjct: 359 AKCGAMARGFEVFKEMKEK----DI---VIMNAAISGLAKNGHVKLSFA---VFGQTEKL 408

Query: 733 GLIPSRQSLDFLLSACANAG 752
           G+ P   +   LL  C +AG
Sbjct: 409 GISPDGSTFLGLLCGCVHAG 428


>AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22704630-22706126 REVERSE
           LENGTH=498
          Length = 498

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 476 AYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTF-SYLI 534
           A ++ +++ K    P    YNA+M    +  ++SG + V+K M E  ++PDS TF S  I
Sbjct: 299 ARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFI 358

Query: 535 TNCQSEE----DIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA----KQVVLDSE 586
              +S+E     + +YY+++K   +       + L+  +   GE        K ++    
Sbjct: 359 GMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKGY 418

Query: 587 VPHKYLHEIKSVLISALASHKQLPEAL 613
            PH +  E+   L +AL + ++  +A 
Sbjct: 419 CPHGHALEL---LTTALCARRRANDAF 442


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/274 (17%), Positives = 110/274 (40%), Gaps = 24/274 (8%)

Query: 377 LHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETY 436
           L E+    P + SY  ++   C   ++D    +++ M   G   ++ +  SI+ +     
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330

Query: 437 DYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYN 496
                   +S + R  +  +  +  +L+  F +  D + A K   ++   +  P    Y 
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 497 AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLS 553
           AI+ G+ +  ++     +   M    ++PDS TF+ LI   C++   +D  + +  +  +
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV-----------LISA 602
           G       +  LI+     G+ + A ++          LHE+  +           +++ 
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANEL----------LHEMWKIGLQPNIFTYNSIVNG 500

Query: 603 LASHKQLPEALLIYEEVKKAGLGVEPKAVISLIE 636
           L     + EA+ +  E + AGL  +     +L++
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/274 (17%), Positives = 110/274 (40%), Gaps = 24/274 (8%)

Query: 377 LHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETY 436
           L E+    P + SY  ++   C   ++D    +++ M   G   ++ +  SI+ +     
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330

Query: 437 DYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYN 496
                   +S + R  +  +  +  +L+  F +  D + A K   ++   +  P    Y 
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 497 AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLS 553
           AI+ G+ +  ++     +   M    ++PDS TF+ LI   C++   +D  + +  +  +
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSV-----------LISA 602
           G       +  LI+     G+ + A ++          LHE+  +           +++ 
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANEL----------LHEMWKIGLQPNIFTYNSIVNG 500

Query: 603 LASHKQLPEALLIYEEVKKAGLGVEPKAVISLIE 636
           L     + EA+ +  E + AGL  +     +L++
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/296 (19%), Positives = 127/296 (42%), Gaps = 13/296 (4%)

Query: 355 IASFAVSIPNLAAE---DIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVD 411
           + ++ V +  L      D+ + + N  E   +   +  +  +I   C    VD A+++  
Sbjct: 225 LVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 284

Query: 412 KMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLK 471
           +M   G   +     S++        +    ++ S +    +  N     +L+  FV+  
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344

Query: 472 DFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFS 531
            F  A K+ +D+ K +  P    YN+++ G+     +     + + M   +  PD  T++
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404

Query: 532 YLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA----KQVVLD 584
            LI   C+S+  ED  + + E+   G+      +  LI      G+ + A    KQ+V D
Sbjct: 405 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 464

Query: 585 SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
              P    +   S+L+  L ++ +L +AL +++ ++K+ + ++     ++IE + +
Sbjct: 465 GVPPDIMTY---SILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 119/281 (42%), Gaps = 11/281 (3%)

Query: 347 DPD--DISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVD 404
           +PD   +S+ I  F        A D++ K+E +       P +  Y  +I   C +  V+
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG----FRPDVVIYNTIIDGSCKIGLVN 191

Query: 405 TAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLV 464
            AV++ D+M   G         S++     +  +    R+   +    +  N     +++
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251

Query: 465 YFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVK 524
             FV+   F  A K+ E++ +    P    YN+++ G      +     +L  M      
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 311

Query: 525 PDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQV 581
           PD  T++ LI   C+S+  ++  K + E+   G+      +  +I  Y   G  + A+++
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371

Query: 582 VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKA 622
              S +  +      S+L+  L  + ++ +AL+++E ++K+
Sbjct: 372 F--SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKS 410


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/272 (18%), Positives = 109/272 (40%), Gaps = 5/272 (1%)

Query: 372 VKVENLHEVLDVLPSMSSYKKLIQYCC-GLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH 430
           + V N  +   + P++ +Y  +I  C  G ++        D+M   G         S+L 
Sbjct: 288 ISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLA 347

Query: 431 ICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIP 490
           +C     +     ++  +    +  +     +L+    +      A++++  +     +P
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMP 407

Query: 491 TAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI---TNCQSEEDIIKYY 547
               Y+ ++ G+ +       L++   MR   +  D  +++ L+   T     E+ +   
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467

Query: 548 EELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK-SVLISALASH 606
            E+   GI+     + AL+  Y   G++++ K+V  + +  H   + +  S LI   +  
Sbjct: 468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKG 527

Query: 607 KQLPEALLIYEEVKKAGLGVEPKAVISLIEEL 638
               EA+ I+ E K AGL  +     +LI+ L
Sbjct: 528 GLYKEAMEIFREFKSAGLRADVVLYSALIDAL 559


>AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2670134-2671738 REVERSE
           LENGTH=534
          Length = 534

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 16/231 (6%)

Query: 404 DTAVDIVDKMCEAGFTLSTQV-LQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRS 462
           + A++I D+M   G + + +V + S++  C           ++  I   HL L   +  S
Sbjct: 222 NKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTS 281

Query: 463 LVYFFVRLKDFKGAYKMIEDLQKMNFIPT-AAMYNAIMGGYFREKNISGGLSVLKHMREA 521
           L+  + +      A+ +     + +   T A M+NAI+GG      I   L +   MRE+
Sbjct: 282 LIDMYAKCGSIGDAWSV---FYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRES 338

Query: 522 NVKPDSQTFSYLITNCQSEEDIIK----YYEELKLSGIQATKQIFMALINAYAACGEFEK 577
            + PD  TF  L+  C S   ++K    +++ LK SG +   + +  +++  +  G  + 
Sbjct: 339 KIDPDEITFLCLLAAC-SHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKD 397

Query: 578 AKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEP 628
           A   +  SE+P K    +   L++   +H  L  A    E V K  + ++P
Sbjct: 398 AHDFI--SEMPIKPTGSMLGALLNGCINHGNLELA----ETVGKKLIELQP 442


>AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15531161-15533038 FORWARD
           LENGTH=625
          Length = 625

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 136/362 (37%), Gaps = 89/362 (24%)

Query: 299 QILDVLKNIDITKLTSVESRSNIFQALGRLQLESDAENLLLDLRASDQDPDDISNFIASF 358
           Q+ D +  +D     +      +  +  RL L  +A  L   LR SD  PDD S      
Sbjct: 25  QVFDGMPELDTVAWNT------MLTSYSRLGLHQEAIALFTQLRFSDAKPDDYS------ 72

Query: 359 AVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGF 418
                                          +  ++  C  L  V     I   +  +GF
Sbjct: 73  -------------------------------FTAILSTCASLGNVKFGRKIQSLVIRSGF 101

Query: 419 TLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICR-SLVYFFVRLKDFKGAY 477
             S  V  S++ +  +  D +  ++++  +C       NE+   SL++ ++  + F+ A 
Sbjct: 102 CASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDS---RNEVTWCSLLFAYMNAEQFEAAL 158

Query: 478 KMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC 537
            +  ++ K      A  +N ++ G+     +   LS+ K M E+  KPD  TFS L+  C
Sbjct: 159 DVFVEMPK----RVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNAC 214

Query: 538 --------------------------QSEEDIIKYYEEL--------KLSGIQATKQI-F 562
                                     +++  ++ +Y +L        +L  I+   Q+ +
Sbjct: 215 SADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSW 274

Query: 563 MALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKA 622
            ++I+A    GE EKA +V      P K +    + +I+    +    +AL  + E+ K+
Sbjct: 275 NSIIDACMKIGETEKALEVF--HLAPEKNI-VTWTTMITGYGRNGDGEQALRFFVEMMKS 331

Query: 623 GL 624
           G+
Sbjct: 332 GV 333


>AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:18941118-18942524 FORWARD
           LENGTH=468
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 12/251 (4%)

Query: 381 LDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYIL 440
           L VLP + +Y  LI+     + +D A  +  +M EAG         S++    +    ++
Sbjct: 42  LGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKN---LM 98

Query: 441 VHRIYSIICRH-HLGLNNEIC--RSLVYFFVRLKDFKGAYKMI-EDLQKMNFIPTAAMYN 496
           ++R+  +     H GL+ ++    +L+  + +L     A+K++ ED+     +P    YN
Sbjct: 99  LNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYN 158

Query: 497 AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSEE--DIIKYYEELKLS 553
            ++    +  +    + + KH++ + VKP+  T++ LI   C+S     +     ELK S
Sbjct: 159 ILLDALCKSGHTDNAIELFKHLK-SRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKS 217

Query: 554 GIQATKQIFMALINAYAACGEFEKAKQVVLD-SEVPHKYLHEIKSVLISALASHKQLPEA 612
           G       +  ++  Y      EK  Q+ L   +  + +       ++SAL    +  EA
Sbjct: 218 GYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEA 277

Query: 613 LLIYEEVKKAG 623
                E+ ++G
Sbjct: 278 YECMHELVRSG 288



 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 454 GLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLS 513
           G++ ++    V    + ++ + A  ++ D  ++  +P    YN ++ GY R   I    +
Sbjct: 10  GISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYA 69

Query: 514 VLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYA 570
           V + MREA ++PD  T++ LI+          +++ ++E+  SG+      +  L++ Y 
Sbjct: 70  VTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYF 129

Query: 571 ACGEFEKAKQVV-----LDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVK 620
             G   +A +++     L   VP     +  ++L+ AL        A+ +++ +K
Sbjct: 130 KLGRHGEAFKILHEDIHLAGLVPGI---DTYNILLDALCKSGHTDNAIELFKHLK 181


>AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8203873-8206341 REVERSE
           LENGTH=822
          Length = 822

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 478 KMIEDLQKMNFIPTAAMYN---AIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLI 534
           KM+ D++     P  A +N   A+ G    +K ++    V + M+    +PD  TF+ LI
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVN---RVFREMKSCGFEPDRDTFNTLI 498

Query: 535 T---NCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLD 584
           +    C SE D  K Y E+  +G  A    + AL+NA A  G++   + V+ D
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551


>AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Pentatricopeptide repeat (PPR) superfamily
           protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
           12380 proteins in 263 species: Archae - 4; Bacteria -
           27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
           - 0; Other Eukaryotes - 935 (source: NCBI BLink). |
           chr4:575843-577243 REVERSE LENGTH=466
          Length = 466

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 13/160 (8%)

Query: 382 DVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETYDYIL 440
           DV+P + SYK LIQ  C   +V+ A++++D M   GF        ++L+ +C +T     
Sbjct: 220 DVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQ---- 275

Query: 441 VHRIYSIICRHHL-GLNNEICR--SLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNA 497
           +   Y ++CR  L G N ++    +++  F R      A K+++D+      P +  Y  
Sbjct: 276 LREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRT 335

Query: 498 IMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC 537
           ++GG   +     G   L+ M      P      + ++NC
Sbjct: 336 LIGGLCDQGMFDEGKKYLEEMISKGFSP-----HFSVSNC 370


>AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:24737719-24739353 FORWARD
           LENGTH=544
          Length = 544

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 393 LIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHH 452
           L+Q    +  ++   D+  ++C+ GFTLS   L +++H   ++    LV RIY       
Sbjct: 170 LVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDKR 229

Query: 453 LGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGL 512
           +  N    R ++    +    K    +++ +     +P+  +  +++     E  I   +
Sbjct: 230 IYPNEITIRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESM 289

Query: 513 SVLKHMREANVKPDSQTFSYLITNCQSEEDII---KYYEELKLSGIQATKQIFMALINAY 569
           S+LK +   N+  D+  +S ++     E D++   K ++E+   G  A   ++   +   
Sbjct: 290 SLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVC 349

Query: 570 AACGEFEKAKQVVLDSE 586
              G+ ++A++++ + E
Sbjct: 350 CEKGDVKEAERLLSEME 366



 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 405 TAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLV 464
           +A  + D+M + GF+ ++ V    + +C E  D     R+ S +    +   +E    L+
Sbjct: 322 SARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLI 381

Query: 465 YFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVK 524
             F R    +   +  E +     +P+ + +N ++    + +N++    +L    +    
Sbjct: 382 GGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFV 441

Query: 525 PDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQ 580
           PD  T+S+LI       DI   +K + E++   +    ++F +LI     CG+ E  ++
Sbjct: 442 PDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEK 500


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/296 (19%), Positives = 126/296 (42%), Gaps = 13/296 (4%)

Query: 355 IASFAVSIPNLAAE---DIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVD 411
           + ++ V +  L      D+   + N  E   +   +  +  +I   C    VD A+++  
Sbjct: 150 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 209

Query: 412 KMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLK 471
           +M   G   +     S++        +    ++ S +    +  N     +L+  FV+  
Sbjct: 210 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269

Query: 472 DFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFS 531
            F  A K+ +D+ K +  P    YN+++ G+     +     + + M   +  PD  T++
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329

Query: 532 YLITN-CQSE--EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKA----KQVVLD 584
            LI   C+S+  ED  + + E+   G+      +  LI      G+ + A    KQ+V D
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389

Query: 585 SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
              P    +   S+L+  L ++ +L +AL +++ ++K+ + ++     ++IE + +
Sbjct: 390 GVPPDIMTY---SILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442


>AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:16983638-16986681 FORWARD
           LENGTH=444
          Length = 444

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 481 EDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNC--- 537
           +D++     PTA ++++ + G  +   +S      + M+   + PD   +++LI+ C   
Sbjct: 65  DDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKC 124

Query: 538 QSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEI-K 596
           ++ ++ I+ Y+E+K   ++   Q F+ L+NA A  G+ +    +V D       L++   
Sbjct: 125 KNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFCY 184

Query: 597 SVLISALASHKQLPEAL 613
           + LI+A  + +  P+ L
Sbjct: 185 AGLITAHLNKQPRPDNL 201


>AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19603828-19606287 FORWARD
           LENGTH=819
          Length = 819

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P + +Y  LI        +D AV++  K+ + G +    +   ++    +T  ++    +
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLL 472

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           +S +   ++  +  +  +L+  F+R  DF  A K+     +         +NA++ G+ R
Sbjct: 473 FSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCR 532

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDI---IKYYEELKLSGIQATKQI 561
              +   L+ +  M E ++ PD  T+S +I     ++D+   IK +  ++ +  +     
Sbjct: 533 SGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVT 592

Query: 562 FMALINAYAACGEFEKA----KQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYE 617
           + +LIN +   G+F+ A    K++ L   VP+   +   + LI +LA      E  + Y 
Sbjct: 593 YTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTY---TTLIRSLAKESSTLEKAVYYW 649

Query: 618 EV 619
           E+
Sbjct: 650 EL 651


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 20/320 (6%)

Query: 332 SDAENLLLDLRASDQDPD--DISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSS 389
           +DA +L  D+  S   P   D +  +++    I  L   D+++ +    EVL +   + +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSA----IVKLKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 390 YKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILH-ICEETY--DYI-LVHRIY 445
           +  +I   C   +V  A+ I+ KM + G+      + S+++  C      D + LV ++ 
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 446 SIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFRE 505
            I  +  +   N I  SL     + K    A+   +++++    P    Y A++ G    
Sbjct: 183 EIGYKPDIVAYNAIIDSL----CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 238

Query: 506 KNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDII---KYYEELKLSGIQATKQIF 562
              S    +L  M +  + P+  T+S L+        ++   + +EE+    I      +
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298

Query: 563 MALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKS--VLISALASHKQLPEALLIYEEVK 620
            +LIN        ++A Q + D  V    L ++ S   LI+     K++ + + ++ E+ 
Sbjct: 299 SSLINGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 621 KAGLGVEPKAVISLIEELTQ 640
           + GL        +LI+   Q
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQ 377


>AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2399117-2400496 REVERSE
           LENGTH=459
          Length = 459

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 388 SSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSI 447
           S +  LIQ+      VD A+D+  K+       + Q L +++++  +  +       +  
Sbjct: 117 SLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDG 176

Query: 448 ICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKN 507
                L  N+     L+  F+   D++ A K+ +++ +M   P+   YN+++G   R  +
Sbjct: 177 AKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDD 236

Query: 508 ISGGLSVLKHMREANVKPDSQTFSYLITN--CQSE-EDIIKYYEELKLSGIQATKQIFMA 564
           +    S+L+ M +  ++P++ TF  L+    C+ E  +  K   +++  G +     +  
Sbjct: 237 MGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGI 296

Query: 565 LINAYAACGEFEKAKQVVLDSEVPHKYLHE---IKSVLISALASHKQLPEALLIYEEVKK 621
           L++     G  ++AK  +L  E+  + +     I ++L++ L +  ++PEA  +  E++ 
Sbjct: 297 LMSDLGKRGRIDEAK--LLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQM 354

Query: 622 AGLGVEPKAV 631
              G +P A 
Sbjct: 355 K--GCKPNAA 362


>AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:448336-450642 REVERSE LENGTH=768
          Length = 768

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 100/220 (45%), Gaps = 12/220 (5%)

Query: 404 DTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSL 463
           + AV++  +M  +G       +  +L +C     +    +I+  + R  L  N  +C SL
Sbjct: 71  EKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSL 130

Query: 464 VYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANV 523
           +  + R    + + K+   ++  N     + +N+I+  Y +   +   + +L  M    +
Sbjct: 131 IVMYSRNGKLELSRKVFNSMKDRNL----SSWNSILSSYTKLGYVDDAIGLLDEMEICGL 186

Query: 524 KPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQ 580
           KPD  T++ L++   S+   +D I   + ++++G++ +     +L+ A A  G  +  K 
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKA 246

Query: 581 V---VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYE 617
           +   +L +++ +     +++ LI        LP A ++++
Sbjct: 247 IHGYILRNQLWYDVY--VETTLIDMYIKTGYLPYARMVFD 284


>AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:860695-863343 REVERSE
           LENGTH=882
          Length = 882

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 494 MYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQS-----EEDIIKYYE 548
           ++N+I+  + +       L     +RE+ V PD  TF  +I  C         D++  YE
Sbjct: 73  LWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV--YE 130

Query: 549 ELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQ 608
           ++   G ++   +  AL++ Y+  G   +A+QV    E+P + L    S LIS  +SH  
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVF--DEMPVRDLVSWNS-LISGYSSHGY 187

Query: 609 LPEALLIYEEVKKA 622
             EAL IY E+K +
Sbjct: 188 YEEALEIYHELKNS 201


>AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:14962617-14964995 REVERSE
           LENGTH=792
          Length = 792

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/247 (18%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           P + +Y  +I       + + ++ +  ++  +G  L +  L S++ +       +L++ I
Sbjct: 285 PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH---LMLIYAI 341

Query: 445 YSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFR 504
           +    + +   +  +  +L   + +L + + A K+ ++  + + +P+   +NA++ GY +
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKS-LPS---WNAMISGYTQ 397

Query: 505 EKNISGGLSVLKHMREANVKPDSQTFSYLITNCQ--SEEDIIKYYEEL-KLSGIQATKQI 561
                  +S+ + M+++   P+  T + +++ C       + K+  +L + +  +++  +
Sbjct: 398 NGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457

Query: 562 FMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKK 621
             ALI  YA CG   +A+++    ++  K      + +IS    H Q  EAL I+ E+  
Sbjct: 458 STALIGMYAKCGSIAEARRLF---DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514

Query: 622 AGLGVEP 628
           +G+   P
Sbjct: 515 SGITPTP 521


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 20/245 (8%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAG-----FTLSTQVLQSILHICEETYDYI 439
           P + +   L+   C   ++  AV +VD+M E G     FT +T +    LH  + +    
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH-NKASEAVA 209

Query: 440 LVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIM 499
           LV ++    C+  L     +   L     +  D   A  +++ ++K        +YN I+
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGL----CKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265

Query: 500 GGYFREKNISGGLSVLKHMREANVKPDSQTFSYLIT---NCQSEEDIIKYYEELKLSGIQ 556
            G  + K++   L++   M    ++PD  T+S LI+   N     D  +   ++    I 
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325

Query: 557 ATKQIFMALINAYAACGEFEKAK----QVVLDSEVPHKYLHEIKSVLISALASHKQLPEA 612
                F ALI+A+   G+  +A+    +++  S  P  + +   S LI+    H +L EA
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY---SSLINGFCMHDRLDEA 382

Query: 613 LLIYE 617
             ++E
Sbjct: 383 KHMFE 387


>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10304850-10307465 FORWARD
           LENGTH=871
          Length = 871

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 443 RIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGY 502
           +++  I +   G  N +  SLV F+++ +    A K+ +++ + + I     +N+I+ GY
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS----WNSIINGY 271

Query: 503 FREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQAT---- 558
                   GLSV   M  + ++ D  T   +   C ++  +I     +   G++A     
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC-ADSRLISLGRAVHSIGVKACFSRE 330

Query: 559 KQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEE 618
            +    L++ Y+ CG+ + AK V    E+  + +    S +I+  A      EA+ ++EE
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVF--REMSDRSVVSYTS-MIAGYAREGLAGEAVKLFEE 387

Query: 619 VKKAGLGVEPKAVISLI 635
           +++ G+  +   V +++
Sbjct: 388 MEEEGISPDVYTVTAVL 404



 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 106/234 (45%), Gaps = 11/234 (4%)

Query: 406 AVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVY 465
           AV + ++M E G +     + ++L+ C          R++  I  + LG +  +  +L+ 
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 466 FFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHM-REANVK 524
            + +    + A  +  +++  + I     +N I+GGY +    +  LS+   +  E    
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIIS----WNTIIGGYSKNCYANEALSLFNLLLEEKRFS 496

Query: 525 PDSQTFSYLITNCQSEEDIIKYYE---ELKLSGIQATKQIFMALINAYAACGEFEKAKQV 581
           PD +T + ++  C S     K  E    +  +G  + + +  +L++ YA CG    A  +
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556

Query: 582 VLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLI 635
             D  +  K L    +V+I+    H    EA+ ++ ++++AG+  +  + +SL+
Sbjct: 557 FDD--IASKDLVSW-TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLL 607


>AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2672756-2675254 REVERSE
           LENGTH=832
          Length = 832

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/536 (18%), Positives = 221/536 (41%), Gaps = 71/536 (13%)

Query: 152 TVEVFGHLGR-ETGLKEYNKLIQLCVKKARGADDEDIAI---------EELSKAFHLLKL 201
            ++V+ + G+ E  L  +N+++      +RG  DE I+           ++ KAF L+++
Sbjct: 220 VLQVYCNTGKSERALSVFNEIL------SRGWLDEHISTILVVSFCKWGQVDKAFELIEM 273

Query: 202 MREYGFPLGEQTYRPILQYLIDLGMV-REFELFSDVIKAENASSTSRLGYYEMMLWLGVN 260
           + E    L  +TY  ++   +    + + F+LF    K       + +  Y++++     
Sbjct: 274 LEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFE---KMRRMGMNADIALYDVLIGGLCK 330

Query: 261 HEEMIRDICEYITVEDS--EDTTALRESYLLALCESDRKTQILDVLKNIDITKLTSVESR 318
           H+++   +  Y+ ++ S       +    L +  E    ++I +V+   DI K + +   
Sbjct: 331 HKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITEVIIG-DIDKKSVMLLY 389

Query: 319 SNIFQALGRLQLESDAENLLLDLRASDQDPDDISNFIA--------------SFAVSIPN 364
            ++F+   R  L  +A + + +L   + + D +S  +               S ++ I  
Sbjct: 390 KSLFEGFIRNDLVHEAYSFIQNLMG-NYESDGVSEIVKLLKDHNKAILPDSDSLSIVINC 448

Query: 365 LA-AEDIIVKVENLHEVLD--VLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLS 421
           L  A  + + V  LH+++   ++P    Y  +I+  C   + + ++ ++ +M +AG   S
Sbjct: 449 LVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPS 508

Query: 422 TQVLQSILHICEETYDYILV------HRIYSI--ICRHHLGLNNEICRSLVYFFVRLKDF 473
              L  I     E  D++         R Y      +H   L  ++C +      R  D 
Sbjct: 509 QFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCEN-----GRAVD- 562

Query: 474 KGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYL 533
             A K ++D+    F+       A + G  + + +  GL + + +      PD   +  L
Sbjct: 563 --ACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVL 620

Query: 534 I----TNCQS-EEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVL----D 584
           I      C++ E DI+  + E+   G++ T   + ++I+ +   GE ++    ++    D
Sbjct: 621 IKALCKACRTMEADIL--FNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYED 678

Query: 585 SEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
            + P    +   + LI  L +  +  EA+  + E+K           ++LI+ L +
Sbjct: 679 EKNPDVITY---TSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCK 731



 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 457 NEICRSLVYFFVRLKDFKGAYKMIE------DLQKMNFIPTAAMYNAIMGGYFREKNISG 510
           N  C  ++ + V +K    A + +E      ++      PT A YN+++ G+ +E  I  
Sbjct: 608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDR 667

Query: 511 GLSVLKHMREANVKPDSQTFSYLITN-CQS--EEDIIKYYEELKLSGIQATKQIFMALIN 567
           GLS +  M E    PD  T++ LI   C S    + I  + E+K       +  FMALI 
Sbjct: 668 GLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQ 727

Query: 568 AYAACG 573
               CG
Sbjct: 728 GLCKCG 733


>AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15750929-15752962 FORWARD
           LENGTH=677
          Length = 677

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/410 (19%), Positives = 173/410 (42%), Gaps = 47/410 (11%)

Query: 373 KVENLHEVLDVLPS--MSSYKKLIQ--YCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSI 428
           KVE   +V DV+ +  + S+  +I   Y  G +  + A+ + D M      L    + S+
Sbjct: 167 KVEMARDVFDVMKNRDVISWNTMISGYYRNGYM--NDALMMFDWMVNESVDLDHATIVSM 224

Query: 429 LHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNF 488
           L +C    D  +   ++ ++    LG   E+  +LV  +++      A  + + +++ + 
Sbjct: 225 LPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDV 284

Query: 489 IPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYE 548
           I    M N    GY  + ++   L + + M+   V+P++ T + L++ C    D +K  +
Sbjct: 285 ITWTCMIN----GYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG---DALKVND 337

Query: 549 ELKLSGIQATKQIF------MALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISA 602
              L G    +Q++       +LI+ YA C   +   +V   +    KY     S +I+ 
Sbjct: 338 GKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGAS---KYHTGPWSAIIAG 394

Query: 603 LASHKQLPEALLIYEEVKKAGLGVEPKAVI--------SLIEELTQXXXXXXXXXXXXXX 654
              ++ + +AL +++ +++    VEP            + + +L Q              
Sbjct: 395 CVQNELVSDALGLFKRMRRE--DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFM 452

Query: 655 XXXXDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKFESDEIQLEVLFDSVFSVIASSK 714
                  +D    ++    +   L SA  +F  +++K +S ++   VL+ ++ S      
Sbjct: 453 SS-----LDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDV---VLWGALISGYGMHG 504

Query: 715 STH--LQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWR 762
             H  LQ  ++++ +     G+ P+  +    L+AC+++G +     ++R
Sbjct: 505 DGHNALQVFMEMVRS-----GVTPNEITFTSALNACSHSGLVEEGLTLFR 549


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 474 KGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPD---SQTF 530
           K A ++   +     IP  A YNA++ G+ + KN+   L +L  ++   +KPD     TF
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513

Query: 531 SYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVV-----LDS 585
            + + + +  E       E+K  GI+A   I+  L++AY   G   +   ++     LD 
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 573

Query: 586 EVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVI 632
           EV          VLI  L  +K + +A+  +  +     G++  A I
Sbjct: 574 EVTVVTF----CVLIDGLCKNKLVSKAVDYFNRISN-DFGLQANAAI 615


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 88/482 (18%), Positives = 178/482 (36%), Gaps = 121/482 (25%)

Query: 384 LPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHR 443
            PS+  + KL+     + K D  +   +KM              IL +    Y Y +   
Sbjct: 62  FPSIVEFSKLLSAIAKMKKFDLVISFGEKM-------------EILGVSHNLYTYNI--- 105

Query: 444 IYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYF 503
           + + +CR          RS + F         A  ++  + K+ + P+    N+++ G+ 
Sbjct: 106 MINCLCR----------RSQLSF---------ALAILGKMMKLGYGPSIVTLNSLLNGFC 146

Query: 504 REKNISGGLSVLKHMREANVKPDSQTFSYLITNC---QSEEDIIKYYEELKLSGIQATKQ 560
               IS  ++++  M E   +PD+ TF+ L+          + +   E + + G Q    
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206

Query: 561 IFMALINAYAACGE-------FEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEAL 613
            + A+IN     GE         K ++  ++++V       I S +I +L  ++ + +AL
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV------IYSTVIDSLCKYRHVDDAL 260

Query: 614 LIYEEVKKAGLGVEPKAVISLIEELTQXXXXXXXXXXXXXXXXXXDYWVDGCFRVIKYCV 673
            ++ E+   G+  +     SLI  L                      W D   R++   +
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGR-----------------WSDAS-RLLSDML 302

Query: 674 QNNHLSSAIVLFKQLKDKF--ESDEIQLEVLFD--------------------------- 704
           +   ++  +V F  L D F  E   I+ E LFD                           
Sbjct: 303 ERK-INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361

Query: 705 ----SVFSVIASS-----------------KSTHLQFGLDLLWAIKDEIGLIPSRQSLDF 743
                +F+++ S                  K+  +  G++L   +    GL+ +  +   
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR-GLVGNTVTYTT 420

Query: 744 LLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDD 803
           L+     A D +NA++++++    G   N+++Y  +   L  +G    A ++ + + K  
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480

Query: 804 ME 805
           ME
Sbjct: 481 ME 482


>AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24681550-24683514 FORWARD
           LENGTH=654
          Length = 654

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/314 (18%), Positives = 132/314 (42%), Gaps = 18/314 (5%)

Query: 321 IFQALGRLQLESDAENLLLDLRASDQDPDDISNFIASFAVSIPNLAAEDIIVKVENLHEV 380
           +FQ   +  L S  E LL ++ +    P+     +  + + I +L  ++ + + E + E+
Sbjct: 205 LFQCCFKQGLYSKKEKLLDEMTSLGIKPN-----VYIYTIYILDLCRDNKMEEAEKMFEL 259

Query: 381 L---DVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYD 437
           +    VLP++ +Y  +I   C    V  A  +  ++  A    +  V  +++    +  +
Sbjct: 260 MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARE 319

Query: 438 YILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNA 497
            +    ++  + +  +  N  +   L++   +  +   A  ++ +++ +N  P    Y  
Sbjct: 320 LVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTI 379

Query: 498 IMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLSG 554
           ++ G   E  ++    + + M+   + P S T++ LI     E   E  +    E+  SG
Sbjct: 380 LINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASG 439

Query: 555 IQATKQIFMALINAYAACGEFEKAK----QVVLDSEVPHKYLHEIKSVLISALASHKQLP 610
           ++     F  LI+ Y    + + A     ++ +   VP    +   + LI A      + 
Sbjct: 440 VEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY---TALIDAHFKEANMK 496

Query: 611 EALLIYEEVKKAGL 624
           EAL +Y ++ +AG+
Sbjct: 497 EALRLYSDMLEAGI 510


>AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS+++   LI  C     +  A  +   M   G  L      +++H   +T+    ++++
Sbjct: 441 PSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQ---LNKV 497

Query: 445 YSIICR-HHLGLNNEICRS--LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGG 501
           + +I      G++ ++     L++  V       A ++I +L +  F+P+   +  ++GG
Sbjct: 498 FELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGG 557

Query: 502 YFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQAT 558
           + +  +      +  +M +  +KPD  T S L+   C+++  E  I  + +L  +G++  
Sbjct: 558 FSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPD 617

Query: 559 KQIFMALINAYAACGEFEKAKQVV 582
             ++  LI+ Y + G+ EKA +++
Sbjct: 618 VVLYNTLIHGYCSVGDIEKACELI 641


>AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 385 PSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRI 444
           PS+++   LI  C     +  A  +   M   G  L      +++H   +T+    ++++
Sbjct: 441 PSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQ---LNKV 497

Query: 445 YSIICR-HHLGLNNEICRS--LVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGG 501
           + +I      G++ ++     L++  V       A ++I +L +  F+P+   +  ++GG
Sbjct: 498 FELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGG 557

Query: 502 YFREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSE--EDIIKYYEELKLSGIQAT 558
           + +  +      +  +M +  +KPD  T S L+   C+++  E  I  + +L  +G++  
Sbjct: 558 FSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPD 617

Query: 559 KQIFMALINAYAACGEFEKAKQVV 582
             ++  LI+ Y + G+ EKA +++
Sbjct: 618 VVLYNTLIHGYCSVGDIEKACELI 641


>AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26805651-26807183 REVERSE
           LENGTH=510
          Length = 510

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 467 FVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPD 526
           + R +  K A      +++  F   ++ +N ++    + +N+     V   M++   +PD
Sbjct: 172 YARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPD 231

Query: 527 SQTFSYLITNCQSEEDIIKYYE---ELKLSGIQATKQIFMALINAYAACGEFEKAKQVVL 583
            ++++ L+     E ++++  E   E+K  G +     +  +INA+    ++E+A +   
Sbjct: 232 IKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFN 291

Query: 584 DSE------VPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLI 635
           + E       PH     I   LI+ L S K+L +AL  +E  K +G  +E     +L+
Sbjct: 292 EMEQRNCKPSPH-----IFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALV 344


>AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:4447647-4449200 FORWARD
           LENGTH=517
          Length = 517

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 116/271 (42%), Gaps = 13/271 (4%)

Query: 379 EVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGF---TLSTQVLQSILHICEET 435
           E L  +P + ++   +   C   KV  AV     M + G     +S  +L + L    + 
Sbjct: 106 ETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKV 165

Query: 436 YDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMI-EDLQKMNFIPTAAM 494
            D +    I++ + R  +  +N+ C +LV      +    AY+M+ E+++      +  +
Sbjct: 166 TDAV---EIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVV 222

Query: 495 YNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYE----EL 550
           YNA++ G+ +   I    ++  +M +   +PD  T++ L+ N   + +++K  E    E+
Sbjct: 223 YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLL-NYYYDNNMLKRAEGVMAEM 281

Query: 551 KLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIK-SVLISALASHKQL 609
             SGIQ     +  L+  +      +K    ++    P  +   +  S LI         
Sbjct: 282 VRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNT 341

Query: 610 PEALLIYEEVKKAGLGVEPKAVISLIEELTQ 640
            +A  ++EE+++ G+ +      SLI+   +
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLR 372


>AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:868468-870279 FORWARD
           LENGTH=603
          Length = 603

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 14/187 (7%)

Query: 453 LGLNNEI--CRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISG 510
           LGL++ +  C +L+  +   +D   A  + + + +    P    YNA++ GY R    + 
Sbjct: 158 LGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE----PCVVCYNAMITGYARRNRPNE 213

Query: 511 GLSVLKHMREANVKPDSQTFSYLITNCQ--SEEDIIKY-YEELKLSGIQATKQIFMALIN 567
            LS+ + M+   +KP+  T   ++++C      D+ K+ ++  K        ++  ALI+
Sbjct: 214 ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALID 273

Query: 568 AYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVE 627
            +A CG  + A  V +  ++ +K   +  S +I A A+H +  +++L++E ++     V+
Sbjct: 274 MFAKCGSLDDA--VSIFEKMRYKDT-QAWSAMIVAYANHGKAEKSMLMFERMRSE--NVQ 328

Query: 628 PKAVISL 634
           P  +  L
Sbjct: 329 PDEITFL 335


>AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6064525-6066720 FORWARD
           LENGTH=731
          Length = 731

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 404 DTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSL 463
           + A+++   M + G T    +L  IL  C     + L    ++ + +  L  N  +   L
Sbjct: 140 ENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNEL 199

Query: 464 VYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANV 523
           +  + +      AY +  ++   N +     +N ++ G+ +E +    + + + M+    
Sbjct: 200 LTLYPKAGRMGDAYNLFVEMPVRNRMS----WNVMIKGFSQEYDCESAVKIFEWMQREEF 255

Query: 524 KPDSQTFSYLIT---NCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFE 576
           KPD  T++ +++    C   ED++KY+  +++SG   + +   AL   ++ C E E
Sbjct: 256 KPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGE---ALAVFFSVCAELE 308


>AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18447788-18450001 FORWARD
           LENGTH=737
          Length = 737

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 401 LKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEIC 460
            K D ++ +  KM EA    +     S++  C       + H+++ +  +        + 
Sbjct: 270 FKRDESLLVFRKMLEASLRPTDLTFVSVMGSCSCA---AMGHQVHGLAIKTGYEKYTLVS 326

Query: 461 RSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMRE 520
            + +  +   +DF  A+K+ E L++ + +     +N ++  Y + K     +SV K M  
Sbjct: 327 NATMTMYSSFEDFGAAHKVFESLEEKDLVT----WNTMISSYNQAKLGKSAMSVYKRMHI 382

Query: 521 ANVKPDSQTFSYLITNCQSEEDIIKYYEELKLS-GIQATKQIFMALINAYAACGEFEKA 578
             VKPD  TF  L+     + D+++  +   +  G+ +  +I  ALI+AY+  G+ EKA
Sbjct: 383 IGVKPDEFTFGSLLAT-SLDLDVLEMVQACIIKFGLSSKIEISNALISAYSKNGQIEKA 440


>AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15510901-15512691 FORWARD
           LENGTH=596
          Length = 596

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 108/262 (41%), Gaps = 5/262 (1%)

Query: 383 VLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVH 442
           V P + +Y  LI   C       A+ + D+M  +G   +     S +H            
Sbjct: 234 VFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREAT 293

Query: 443 RIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGY 502
           R++  I +  +  N+    +L+  + R+ D   A ++ E ++   F P    YN+I+   
Sbjct: 294 RLFREI-KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKL 352

Query: 503 FREKNISGGLSVLKHMREANVKPDSQTFSYLITN-CQSEEDI--IKYYEELKLSGIQATK 559
             +  I     +L  M    ++PD+ T + LI   C+ E+ +  +K  +++  SG++   
Sbjct: 353 CEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDM 412

Query: 560 QIFMALINAYAACGEFEKAKQVVLDS-EVPHKYLHEIKSVLISALASHKQLPEALLIYEE 618
             + ALI+ +    E E AK+ +    E      +   S L+    +  +  E   + EE
Sbjct: 413 YSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEE 472

Query: 619 VKKAGLGVEPKAVISLIEELTQ 640
            +K GL  +      LI  + +
Sbjct: 473 FEKRGLCADVALYRGLIRRICK 494


>AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:7056254-7057954 FORWARD
           LENGTH=566
          Length = 566

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 7/208 (3%)

Query: 380 VLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYI 439
           VLDV     S+  LI+ CC   +++ + D++ ++ E GF+ +  +  +++  C +  +  
Sbjct: 160 VLDVY----SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 440 LVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIM 499
               ++  + +  L  N      L+    +    K  ++M E +Q+    P    YN +M
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275

Query: 500 GGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSE---EDIIKYYEELKLSGIQ 556
               ++        V   MRE  V  +  T++ LI     E    +  K  +++K  GI 
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335

Query: 557 ATKQIFMALINAYAACGEFEKAKQVVLD 584
                +  LI+ +   G+  KA  +  D
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRD 363