Miyakogusa Predicted Gene

Lj3g3v1010920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1010920.1 Non Chatacterized Hit- tr|I3SMY8|I3SMY8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.46,0,coiled-coil,NULL; Ligand-binding domain in the NO
signalling and Golgi transport,NO signalling/Golgi,CUFF.42177.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54750.1 | Symbols:  | Transport protein particle (TRAPP) com...   352   1e-97
AT5G54750.2 | Symbols:  | Transport protein particle (TRAPP) com...   342   6e-95

>AT5G54750.1 | Symbols:  | Transport protein particle (TRAPP)
           component | chr5:22242080-22243477 FORWARD LENGTH=186
          Length = 186

 Score =  352 bits (902), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 180/186 (96%)

Query: 1   MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
           MAPV PRSGDAIF++I+RVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61  VDEFLAKSNVSRCVDFRETTDVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDF 120
           +DEFLAKS VSRCVDF+ET ++IAKVGFKMFLGVTASVT+WD++GTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 121 VELPDTCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKQVPEEY 180
           VELPDTCQGLYYCN+LSGVIRGAL+MVSMKTEVTW RDVLRGDD +ELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 181 PYKDDE 186
           PYKDDE
Sbjct: 181 PYKDDE 186


>AT5G54750.2 | Symbols:  | Transport protein particle (TRAPP)
           component | chr5:22242080-22243477 FORWARD LENGTH=199
          Length = 199

 Score =  342 bits (878), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 180/199 (90%), Gaps = 13/199 (6%)

Query: 1   MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQM-------- 52
           MAPV PRSGDAIF++I+RVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQM        
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 53  -----GYNIGIRLVDEFLAKSNVSRCVDFRETTDVIAKVGFKMFLGVTASVTNWDAEGTC 107
                GYNIGIRL+DEFLAKS VSRCVDF+ET ++IAKVGFKMFLGVTASVT+WD++GTC
Sbjct: 61  DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTC 120

Query: 108 CSIVLEDNPLVDFVELPDTCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFE 167
           CSI+LEDNPLVDFVELPDTCQGLYYCN+LSGVIRGAL+MVSMKTEVTW RDVLRGDD +E
Sbjct: 121 CSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYE 180

Query: 168 LQVKLLKQVPEEYPYKDDE 186
           LQVKLLKQV EEYPYKDDE
Sbjct: 181 LQVKLLKQVAEEYPYKDDE 199