Miyakogusa Predicted Gene

Lj3g3v0966470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0966470.1 tr|C0Z2Y2|C0Z2Y2_ARATH AT1G79040 protein
OS=Arabidopsis thaliana GN=AT1G79040 PE=4 SV=1,67.61,5e-19,seg,NULL;
PsbR,Photosystem II PsbR,CUFF.42327.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79040.1 | Symbols: PSBR | photosystem II subunit R | chr1:29...   164   2e-41

>AT1G79040.1 | Symbols: PSBR | photosystem II subunit R |
           chr1:29736085-29736781 FORWARD LENGTH=140
          Length = 140

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 101/140 (72%), Gaps = 1/140 (0%)

Query: 1   MASSVM-ASVSLKPAGFSLEKSSVRGLPXXXXXXXXXXXXXXGGKKIKTDTPYGTGGGMN 59
           MA+SVM +SV+LKPAGF++EK++ RGLP              G KKIKTD P+G  G M+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 60  LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 119
           LR+GVDASGRK +G GVY+YVDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 120 XXXXXXXXXXXVYNTSALSQ 139
                      VYNTSAL+Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140