Miyakogusa Predicted Gene

Lj3g3v0965980.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965980.1 Non Chatacterized Hit- tr|I1MJ63|I1MJ63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50466
PE,83.83,0,PPR_1,Pentatricopeptide repeat; PPR_2,Pentatricopeptide
repeat; PPR,Pentatricopeptide repeat; HCP-li,CUFF.41915.1
         (569 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   728   0.0  
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   379   e-105
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   358   6e-99
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...   242   5e-64
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...   241   1e-63
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   237   2e-62
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   235   5e-62
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   234   1e-61
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   234   2e-61
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   233   3e-61
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   231   9e-61
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   231   1e-60
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   230   2e-60
AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   230   2e-60
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   228   9e-60
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...   228   1e-59
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...   226   3e-59
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   225   8e-59
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   221   8e-58
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   221   1e-57
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   221   1e-57
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   220   2e-57
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   212   7e-55
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   211   8e-55
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   210   2e-54
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   210   3e-54
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   208   8e-54
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   207   2e-53
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   206   3e-53
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   206   4e-53
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   204   1e-52
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   204   2e-52
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   204   2e-52
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   202   5e-52
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   202   6e-52
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   201   1e-51
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   200   2e-51
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   200   2e-51
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   199   4e-51
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   199   4e-51
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   199   5e-51
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   198   7e-51
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   198   1e-50
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...   197   1e-50
AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   196   4e-50
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   195   7e-50
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   194   2e-49
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   194   2e-49
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   194   2e-49
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   193   3e-49
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   193   3e-49
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   191   1e-48
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...   190   2e-48
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   190   2e-48
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   190   3e-48
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   189   3e-48
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   189   4e-48
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   189   6e-48
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   187   2e-47
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   186   3e-47
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   186   5e-47
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   186   6e-47
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   185   9e-47
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   185   9e-47
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   184   1e-46
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   183   3e-46
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   182   4e-46
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...   181   2e-45
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   180   2e-45
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   178   8e-45
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   177   3e-44
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   172   6e-43
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   172   8e-43
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   171   1e-42
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   169   3e-42
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   169   6e-42
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   169   7e-42
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   168   8e-42
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   167   1e-41
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   167   2e-41
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   166   5e-41
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   166   5e-41
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...   165   1e-40
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   164   2e-40
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   162   5e-40
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   162   6e-40
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   162   7e-40
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   162   8e-40
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   162   8e-40
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   157   2e-38
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   157   2e-38
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...   157   2e-38
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   156   3e-38
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   156   4e-38
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   156   4e-38
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   155   6e-38
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   155   9e-38
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   154   2e-37
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   153   3e-37
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   153   3e-37
AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   152   6e-37
AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   152   6e-37
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   151   1e-36
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   149   4e-36
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   149   7e-36
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   147   1e-35
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   147   1e-35
AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   146   3e-35
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   145   6e-35
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   144   1e-34
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   142   7e-34
AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   142   9e-34
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...   141   1e-33
AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   140   2e-33
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   140   2e-33
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...   140   3e-33
AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   139   4e-33
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ...   137   2e-32
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   137   2e-32
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...   137   2e-32
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...   137   3e-32
AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   135   1e-31
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   134   1e-31
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   134   1e-31
AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   134   2e-31
AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   134   2e-31
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   133   3e-31
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   131   1e-30
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...   131   1e-30
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...   131   2e-30
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   130   2e-30
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   130   3e-30
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   130   3e-30
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   129   5e-30
AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   128   1e-29
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   127   1e-29
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   127   2e-29
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   127   2e-29
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   127   2e-29
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   127   3e-29
AT1G05600.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   126   4e-29
AT1G05600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   126   4e-29
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   125   6e-29
AT3G04130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   125   1e-28
AT3G04130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   125   1e-28
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   124   1e-28
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   120   2e-27
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   120   2e-27
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   120   3e-27
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   5e-27
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   119   5e-27
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   119   6e-27
AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   6e-27
AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-con...   119   6e-27
AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   118   1e-26
AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   117   3e-26
AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   116   4e-26
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   116   4e-26
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...   115   7e-26
AT5G18390.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   1e-25
AT1G71210.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   2e-25
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   114   3e-25
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   113   3e-25
AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   113   3e-25
AT2G17670.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   113   4e-25
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR) ...   113   5e-25
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   112   5e-25
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   112   5e-25
AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   112   6e-25
AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   110   2e-24
AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   108   8e-24
AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   108   9e-24
AT1G80550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   108   1e-23
AT2G38420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   107   2e-23
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...   107   2e-23
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...   107   2e-23
AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   107   3e-23
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   105   8e-23
AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   105   1e-22
AT3G46610.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   103   2e-22
AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   103   4e-22
AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   102   5e-22
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...   102   6e-22
AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   101   1e-21
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (...   101   1e-21
AT5G15280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   101   1e-21
AT4G36680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   101   2e-21
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) ...   100   2e-21
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup...   100   3e-21
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup...   100   3e-21
AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   100   5e-21
AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    99   7e-21
AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    99   1e-20
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | c...    98   2e-20
AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   2e-20
AT1G77405.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    97   3e-20
AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   4e-20
AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   4e-20
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   6e-20
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   7e-20
AT1G80880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   1e-19
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    95   2e-19
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | c...    94   3e-19
AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   3e-19
AT1G11630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   3e-19
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...    93   5e-19
AT3G17370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   6e-19
AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    93   6e-19
AT1G10270.1 | Symbols: GRP23 | glutamine-rich protein 23 | chr1:...    92   9e-19
AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    91   2e-18
AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   4e-18
AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   4e-18
AT2G18520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   5e-18
AT3G25210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   5e-18
AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   7e-18
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...    89   7e-18
AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   8e-18
AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   8e-18
AT5G61370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   1e-17
AT3G48250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    88   2e-17
AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   3e-17
AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   3e-17
AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-...    87   3e-17
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-...    86   8e-17
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    86   9e-17
AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   1e-16
AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    85   1e-16
AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   1e-16
AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    85   1e-16
AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    85   1e-16
AT5G02830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   1e-16
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ...    84   2e-16
AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    84   3e-16
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...    84   4e-16
AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   1e-15
AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   1e-15
AT2G27800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    81   2e-15
AT1G68980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    80   3e-15
AT2G28050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   3e-15
AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   4e-15
AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   6e-15
AT1G80150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   6e-15
AT5G67570.1 | Symbols: EMB246, DG1, EMB1408 | Tetratricopeptide ...    79   9e-15
AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   1e-14
AT3G60040.1 | Symbols:  | F-box family protein | chr3:22175937-2...    79   1e-14
AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    78   1e-14
AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    78   2e-14
AT5G27270.1 | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-l...    78   2e-14
AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   2e-14
AT5G60960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   3e-14
AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   3e-14
AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    77   4e-14
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su...    77   4e-14
AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   4e-14
AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    77   5e-14
AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   6e-14
AT5G48730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   6e-14
AT1G69290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   6e-14
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   6e-14
AT4G38150.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   7e-14
AT4G38150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    76   7e-14
AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...    76   8e-14
AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly, ...    75   9e-14
AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   1e-13
AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   1e-13
AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    75   1e-13
AT1G30610.2 | Symbols: EMB2279 | pentatricopeptide (PPR) repeat-...    75   1e-13
AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    75   1e-13
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   2e-13
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110...    75   2e-13
AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    75   2e-13
AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    74   2e-13
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su...    74   3e-13
AT5G28380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   7e-13
AT2G40240.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   8e-13
AT5G03560.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   8e-13
AT5G28340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   8e-13
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 ...    72   9e-13
AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    72   9e-13
AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    72   1e-12
AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G26460.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    71   2e-12
AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   2e-12
AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   2e-12
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...    70   3e-12
AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   3e-12
AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   4e-12
AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   5e-12
AT3G56030.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   6e-12
AT1G19520.1 | Symbols: NFD5 | pentatricopeptide (PPR) repeat-con...    69   6e-12
AT5G15980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   6e-12
AT5G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    69   6e-12
AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   7e-12
AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   7e-12
AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   7e-12
AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   7e-12
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 ...    69   8e-12
AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   8e-12
AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    69   8e-12
AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   9e-12
AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    69   1e-11
AT1G07590.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li...    68   2e-11
AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT1G30610.1 | Symbols: EMB88, EMB2279 | pentatricopeptide (PPR) ...    67   2e-11
AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   2e-11
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   3e-11
AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   3e-11
AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   3e-11
AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   3e-11
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    67   4e-11
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 ...    67   4e-11
AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    67   5e-11
AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   8e-11
AT1G76280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   8e-11
AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   8e-11
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik...    66   8e-11
AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   9e-11
AT1G76280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   9e-11
AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   2e-10
AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   3e-10
AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-li...    64   3e-10
AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   3e-10
AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-10
AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-10
AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   4e-10
AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   4e-10
AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   5e-10
AT5G66631.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   5e-10
AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   6e-10
AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    63   6e-10
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...    63   6e-10
AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   7e-10
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   7e-10
AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   8e-10
AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   8e-10
AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   8e-10
AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   9e-10
AT5G10690.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    62   9e-10
AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   9e-10
AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   1e-09
AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   2e-09
AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    61   2e-09
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 ...    61   2e-09
AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...    61   2e-09
AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-09
AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   3e-09
AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    60   4e-09
AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT5G36300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   5e-09
AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   6e-09
AT1G60770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   6e-09
AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   6e-09
AT1G76280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   6e-09
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-...    59   7e-09
AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   7e-09
AT2G20710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   8e-09
AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   9e-09
AT5G27300.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    59   1e-08
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-li...    59   1e-08
AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT5G27300.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    59   1e-08
AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    59   1e-08
AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   1e-08
AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   2e-08
AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   2e-08
AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re...    57   3e-08
AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   3e-08
AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   3e-08
AT1G06270.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-08
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (P...    57   4e-08
AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   4e-08
AT4G21170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   4e-08
AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   4e-08
AT2G20710.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   5e-08
AT3G02490.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   6e-08
AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   6e-08
AT4G14190.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   8e-08
AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   9e-08
AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT3G60960.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   1e-07
AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-07
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopepti...    55   2e-07
AT3G60980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-07
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-07
AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-07
AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   3e-07
AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   5e-07
AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   5e-07
AT4G35850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-07
AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-07
AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   7e-07
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-li...    53   7e-07
AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    53   7e-07
AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   8e-07
AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   1e-06
AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   1e-06
AT2G15820.1 | Symbols: OTP51 | endonucleases | chr2:6888734-6891...    52   1e-06
AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-06
AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    52   1e-06
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su...    52   1e-06
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 ...    51   2e-06
AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-06
AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   4e-06
AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   4e-06
AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   6e-06
AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   9e-06

>AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29747102-29748832 REVERSE
           LENGTH=576
          Length = 576

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/578 (61%), Positives = 453/578 (78%), Gaps = 17/578 (2%)

Query: 1   MATLLNTVSPAANLSAKTRRTNSSCFLYSQVLN--LRTFSLNKGFSRVLASAQISISPKD 58
           M+TLLN+V   A+  +  R+   +    S + +  L   S++KG +RVLAS QI++SPKD
Sbjct: 1   MSTLLNSVLSMASPESSPRK---AVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKD 57

Query: 59  SIFTL--PNWRVG------KNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLC 110
           S FT+   +W+         +D +S E  L+D+F HLE +V  G KP+VA +TQLLYDLC
Sbjct: 58  SAFTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLC 117

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           K+N+ +KA+RV+E++V SGIIPDA+ YT+LVN LC+RGN+GYAMQLVEK+E+HG+ + TV
Sbjct: 118 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTV 177

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           TYN LV+GLC  G LNQSLQ ++RL +KGL PN FTYSFLLE AYKERG DEA+KLLD+I
Sbjct: 178 TYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEI 237

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           I +GGEPNLVSYNVLLTG CKEGRT+DA+ LFR+LPAKGF  +VVSYNILLR LC +GRW
Sbjct: 238 IVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRW 297

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG--FNVTATSYN 348
           EEAN LLAEMD  D +PSVVTYNILI SL+ HGRTEQA +VL EM++    F VTATSYN
Sbjct: 298 EEANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYN 357

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNK 407
           P+IARLCKEGKVDLVV+CLD+MI RR  PNEGTYNAI  LCE   KVQEAF+I QSL NK
Sbjct: 358 PVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNK 417

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
           Q C  HD+ K+VI+ LCRKGNT+ AFQ+LYEMT+CGF PD++TYS+L+RG+C EGM   A
Sbjct: 418 QKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTGA 477

Query: 468 LEIFRILEENDY-MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           +E+  I+EE++   P +DN+NA+ILG CK +RTDL++E+F+ MV K  +PNE TY ILVE
Sbjct: 478 MEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVE 537

Query: 527 GLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDL 564
           G+A E+EL++A  ++ EL +R+V+ ++ VDR+ MQ++L
Sbjct: 538 GIAHEDELELAKEVLDELRLRKVIGQNAVDRIVMQFNL 575


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 319/526 (60%), Gaps = 11/526 (2%)

Query: 38  SLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVR---LNDAFLHLEYMVGKG 94
           +L+ G+S   ++     S  +S F L +  V  N+   + VR   L + F  LE MV  G
Sbjct: 77  TLSSGYSN--SNGNGHYSSVNSSFALED--VESNNHLRQMVRTGELEEGFKFLENMVYHG 132

Query: 95  QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
             PD+   T L+   C+  K RKA +++E++ GSG +PD   Y  +++  C+ G I  A+
Sbjct: 133 NVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNAL 192

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
            +++++         VTYNT+++ LC  GKL Q++++LDR+ ++   P+V TY+ L+E  
Sbjct: 193 SVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT 249

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            ++ GV  AMKLLD++  RG  P++V+YNVL+ G+CKEGR ++AI+   D+P+ G  P+V
Sbjct: 250 CRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV 309

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           +++NI+LRS+C  GRW +A  LLA+M  +  SPSVVT+NILI  L   G   +A ++L++
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
           M + G    + SYNP++   CKE K+D  ++ L++M+ R   P+  TYN  +  LC+ GK
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           V++A  I   L +K   P+      VI  L + G T  A ++L EM      PD+ TYSS
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSS 489

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           LV G+ REG +DEA++ F   E     P+   +N+++LG CK ++TD +I+    M+N+G
Sbjct: 490 LVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRG 549

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLS 559
           C PNE +YTIL+EGLA+E     A  L+ EL  + ++ +S+ ++++
Sbjct: 550 CKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVA 595


>AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:1303884-1305692 REVERSE
           LENGTH=602
          Length = 602

 Score =  358 bits (919), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 188/482 (39%), Positives = 279/482 (57%), Gaps = 3/482 (0%)

Query: 85  LHL-EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
           LHL E MV KG  PDV   T+L+          KAVRVME++   G  PD   Y  L+N 
Sbjct: 109 LHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ-PDVFAYNALING 167

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
            C+   I  A ++++++    F   TVTYN ++  LCS GKL+ +L++L++L     +P 
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT 227

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           V TY+ L+E    E GVDEA+KL+D++++RG +P++ +YN ++ G+CKEG  + A E+ R
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           +L  KG  P V+SYNILLR+L  +G+WEE   L+ +M  E   P+VVTY+ILIT+L   G
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
           + E+A  +L  M   G    A SY+P+IA  C+EG++D+ ++ L+ MI     P+   YN
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 384 AI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
            + A LC+ GK  +A  IF  LG     P       + S L   G+   A  M+ EM   
Sbjct: 408 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN 467

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLS 502
           G  PD  TY+S++  +CREGM+DEA E+   +   ++ P +  YN ++LGFCK  R + +
Sbjct: 468 GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDA 527

Query: 503 IEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQY 562
           I + + MV  GC PNE TYT+L+EG+ F      A  L  +L   + +S  +  RL   +
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587

Query: 563 DL 564
            L
Sbjct: 588 PL 589



 Score =  216 bits (549), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 194/350 (55%), Gaps = 2/350 (0%)

Query: 180 CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           C  G   +SL LL+ + +KG  P+V   + L++G +  R + +A++++ +I+ + G+P++
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDV 158

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
            +YN L+ G CK  R +DA  +   + +K FSP  V+YNI++ SLC  G+ + A  +L +
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           +  ++  P+V+TY ILI +  L G  ++A +++DEM   G      +YN II  +CKEG 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 360 VDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN 418
           VD   + +  +  +   P+  +YN  +  L  QGK +E   +   + +++  P       
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSI 338

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
           +I+ LCR G    A  +L  M + G TPD+Y+Y  L+   CREG LD A+E    +  + 
Sbjct: 339 LITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +PDI NYN ++   CK  + D ++EIF ++   GC PN  +Y  +   L
Sbjct: 399 CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448



 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 207/396 (52%), Gaps = 7/396 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   L+ M  K   PD      ++  LC   K   A++V+  ++     P    YT
Sbjct: 173 RIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYT 232

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+      G +  A++L++++   G +    TYNT+++G+C  G ++++ +++  L  K
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G +P+V +Y+ LL     +   +E  KL+  + +   +PN+V+Y++L+T LC++G+ E+A
Sbjct: 293 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + L + +  KG +P   SY+ L+ + C EGR + A   L  M  +   P +V YN ++ +
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLAT 412

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L  +G+ +QA E+  ++   G +  ++SYN + + L   G     +  + +M+     P+
Sbjct: 413 LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHD--YCKNVISM-LCRKGNTYPAFQ 434
           E TYN+ I+ LC +G V EA   F+ L + ++C  H      N++ +  C+      A  
Sbjct: 473 EITYNSMISCLCREGMVDEA---FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIN 529

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           +L  M   G  P+  TY+ L+ G+   G   EA+E+
Sbjct: 530 VLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 135/276 (48%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE  ++ AF  +  +  KG +PDV     LL  L    K  +  ++M  +      P+  
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y+ L+  LCR G I  AM L++ ++E G      +Y+ L+   C  G+L+ +++ L+ +
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G  P++  Y+ +L    K    D+A+++   +   G  PN  SYN + + L   G  
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDK 454

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             A+ +  ++ + G  P  ++YN ++  LC EG  +EA  LL +M   +  PSVVTYNI+
Sbjct: 455 IRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIV 514

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           +       R E A  VL+ M  +G     T+Y  +I
Sbjct: 515 LLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550



 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           ++ ++ +A   L+ M  KG  PD      L+   C+  +   A+  +E ++  G +PD  
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  ++  LC+ G    A+++  K+ E G    + +YNT+   L S G   ++L ++  +
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEM 464

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G+ P+  TY+ ++    +E  VDEA +LL D+ +    P++V+YN++L G CK  R 
Sbjct: 465 MSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRI 524

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           EDAI +   +   G  P+  +Y +L+  + + G   EA
Sbjct: 525 EDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEA 562


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score =  242 bits (617), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 244/458 (53%), Gaps = 7/458 (1%)

Query: 98  DVAQATQLLYDLCKSNKAR-----KAVRVMEMIVGSGIIPDAACYTHLVNFLCR-RGNIG 151
           D+  +T  ++DL   + +R     KA+ ++ +    G +P    Y  +++   R + NI 
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           +A  + +++ E        TYN L++G C  G ++ +L L D++  KG  PNV TY+ L+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           +G  K R +D+  KLL  +  +G EPNL+SYNV++ GLC+EGR ++   +  ++  +G+S
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
              V+YN L++  C EG + +A  + AEM    L+PSV+TY  LI S+   G   +A E 
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCE 390
           LD+M   G      +Y  ++    ++G ++   + L +M    +SP+  TYNA I   C 
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
            GK+++A  + + +  K   P       V+S  CR  +   A ++  EM + G  PD+ T
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           YSSL++G C +    EA +++  +      PD   Y ALI  +C     + ++++   MV
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
            KG +P+ +TY++L+ GL  ++    A  L+ +L+  E
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585



 Score =  234 bits (597), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 230/454 (50%), Gaps = 22/454 (4%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           V ++ Q  YDLC S  +     V +++V S                 R   I  A+ +V 
Sbjct: 119 VFKSLQETYDLCYSTSS-----VFDLVVKS---------------YSRLSLIDKALSIVH 158

Query: 159 KVEEHGFQTGTVTYNTLVKG-LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
             + HGF  G ++YN ++   + S   ++ +  +   + +  + PNVFTY+ L+ G    
Sbjct: 159 LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFA 218

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             +D A+ L D +  +G  PN+V+YN L+ G CK  + +D  +L R +  KG  P+++SY
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N+++  LC EGR +E + +L EM+    S   VTYN LI      G   QA  +  EM R
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQE 396
            G   +  +Y  +I  +CK G ++  ++ LDQM  R   PNE TY  +     ++G + E
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNE 398

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A+ + + + +    P       +I+  C  G    A  +L +M + G +PD  +YS+++ 
Sbjct: 399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G CR   +DEAL + R + E    PD   Y++LI GFC+ +RT  + ++++ M+  G  P
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           +E TYT L+     E +L+ A  L  E+  + VL
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552



 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 224/462 (48%), Gaps = 16/462 (3%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG  P+V     L+   CK  K     +++  +   G+ P+   Y  ++N LCR G 
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +     ++ ++   G+    VTYNTL+KG C  G  +Q+L +   + + GL P+V TY+ 
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+    K   ++ AM+ LD +  RG  PN  +Y  L+ G  ++G   +A  + R++   G
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           FSPSVV+YN L+   C  G+ E+A  +L +M E+ LSP VV+Y+ +++        ++A 
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
            V  EM   G      +Y+ +I   C++ +        ++M+     P+E TY A I   
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C +G +++A  +   +  K   P       +I+ L ++  T  A ++L ++      P  
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSD 590

Query: 449 YTYS---------------SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            TY                SL++G C +GM+ EA ++F  +   ++ PD   YN +I G 
Sbjct: 591 VTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           C+      +  +++ MV  G + + +T   LV+ L  E +++
Sbjct: 651 CRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVN 692



 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 219/461 (47%), Gaps = 16/461 (3%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           +E R+ +    L  M  +G   D      L+   CK     +A+ +   ++  G+ P   
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L++ +C+ GN+  AM+ ++++   G      TY TLV G    G +N++ ++L  +
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G  P+V TY+ L+ G      +++A+ +L+D+  +G  P++VSY+ +L+G C+    
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++A+ + R++  KG  P  ++Y+ L++  C + R +EA  L  EM    L P   TY  L
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I +  + G  E+A ++ +EM   G      +Y+ +I  L K+ +     + L ++     
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586

Query: 376 SPNEGTYNA----------------IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
            P++ TY+                 I   C +G + EA  +F+S+  K + P       +
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           I   CR G+   A+ +  EM K GF   + T  +LV+ + +EG ++E   +   +  +  
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCE 706

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
           + + +    L+    +    D+ +++   M   G +PN I+
Sbjct: 707 LSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 188/401 (46%), Gaps = 51/401 (12%)

Query: 64  PNWRVGKN--DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRV 121
           PN R      D  S++  +N+A+  L  M   G  P V     L+   C + K   A+ V
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437

Query: 122 MEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCS 181
           +E +   G+ PD   Y+ +++  CR  ++  A+++  ++ E G +  T+TY++L++G C 
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497

Query: 182 HGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS 241
             +  ++  L + + + GL P+ FTY+ L+     E  +++A++L ++++ +G  P++V+
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI---------------LLRSLCY 286
           Y+VL+ GL K+ RT +A  L   L  +   PS V+Y+                L++  C 
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCM 617

Query: 287 EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
           +G   EA+ +   M  ++  P    YNI+I      G   +A+ +  EM +SGF +   +
Sbjct: 618 KGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVT 677

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGN 406
              ++  L KEGKV+     L+ +I             +   CE  + ++A         
Sbjct: 678 VIALVKALHKEGKVNE----LNSVIVH-----------VLRSCELSEAEQA--------- 713

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
                     K ++ +  R+GN      +L EM K GF P+
Sbjct: 714 ----------KVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 41/274 (14%)

Query: 19  RRTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFT-LPNWRVGKNDQKSKE 77
           RRT  +C LY ++L                  ++ + P +  +T L N    + D + K 
Sbjct: 499 RRTKEACDLYEEML------------------RVGLPPDEFTYTALINAYCMEGDLE-KA 539

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           ++L++       MV KG  PDV   + L+  L K ++ R+A R++  +     +P    Y
Sbjct: 540 LQLHNE------MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTY 593

Query: 138 ---------------THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
                            L+   C +G +  A Q+ E +     +     YN ++ G C  
Sbjct: 594 HTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRA 653

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           G + ++  L   + K G   +  T   L++  +KE  V+E   ++  ++           
Sbjct: 654 GDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQA 713

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
            VL+    +EG  +  +++  ++   GF P+ +S
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score =  241 bits (614), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/549 (27%), Positives = 272/549 (49%), Gaps = 52/549 (9%)

Query: 44  SRVLASAQISISPKDSIFTLPNWR---VGKN--DQKSK-------EVRLNDAFLHLEYMV 91
           S V+     ++SP  S F    WR    GK   D + K       E++L+DA      MV
Sbjct: 18  SLVVRGNAATVSPSFSFF----WRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMV 73

Query: 92  GKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIG 151
                P + + ++LL  + K NK    + + E +   GI  +   Y+ L+N  CRR  + 
Sbjct: 74  KSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLP 133

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
            A+ ++ K+ + G++   VT ++L+ G C   ++++++ L+D++   G +PN  T++ L+
Sbjct: 134 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT---------------- 255
            G +      EAM L+D ++A+G +P+LV+Y V++ GLCK G T                
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253

Query: 256 -------------------EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
                              +DA+ LF+++  KG  P+VV+Y+ L+  LC  GRW +A+ L
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           L++M E  ++P V T++ LI +    G+  +A ++ DEM +   + +  +Y+ +I   C 
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
             ++D   Q  + M+ +   P+  TYN  I   C+  +V+E   +F+ +  +        
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433

Query: 416 CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
              +I  L + G+   A ++  EM   G  P+  TY++L+ G+C+ G L++A+ +F  L+
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
            +   P I  YN +I G CK  + +   ++F  +  KG  P+ + Y  ++ G   +   +
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553

Query: 536 IAAGLMKEL 544
            A  L KE+
Sbjct: 554 EADALFKEM 562



 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 234/458 (51%), Gaps = 2/458 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+++A   ++ M   G +P+      L++ L   NKA +A+ +++ +V  G  PD   Y 
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+RG+   A  L+ K+E+   + G + YNT++ GLC +  ++ +L L   +  K
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++PNV TYS L+          +A +LL D+I R   P++ +++ L+    KEG+  +A
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L+ ++  +   PS+V+Y+ L+   C   R +EA  +   M  +   P VVTYN LI  
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
              + R E+  EV  EM++ G      +YN +I  L + G  D+  +   +M+     PN
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 379 EGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TYN +   LC+ GK+++A  +F+ L   +  P       +I  +C+ G     + +  
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
            ++  G  PD   Y++++ G CR+G  +EA  +F+ ++E+  +P+   YN LI    +  
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
             + S E+ + M + G   +  T   LV  +  +  LD
Sbjct: 586 DREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLD 622



 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 190/397 (47%), Gaps = 35/397 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   ++DA    + M  KG +P+V   + L+  LC   +   A R++  ++   I 
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   ++ L++   + G +  A +L +++ +       VTY++L+ G C H +L+++ Q+
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
            + +  K   P+V TY+ L++G  K + V+E M++  ++  RG   N V+YN+L+ GL +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G  + A E+F+++ + G  P++++YN LL  LC  G+ E+A  +   +    + P++ T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YNI+I  +   G+ E  +++   ++  G      +YN +I+  C++G  +       +M 
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
                PN G YN +                                  I    R G+   
Sbjct: 564 EDGTLPNSGCYNTL----------------------------------IRARLRDGDREA 589

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           + +++ EM  CGF  D+ T   LV  M  +G LD++ 
Sbjct: 590 SAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKSF 625



 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 192/399 (48%), Gaps = 4/399 (1%)

Query: 167 TGTVTYN---TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           +G  +Y+    L +   S  KL+ ++ L   + K    P++  +S LL    K    D  
Sbjct: 41  SGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVV 100

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           + L + +   G   N  +Y++L+   C+  +   A+ +   +   G+ P++V+ + LL  
Sbjct: 101 ISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNG 160

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
            C+  R  EA  L+ +M      P+ VT+N LI  L LH +  +A  ++D M   G    
Sbjct: 161 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 220

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQ 402
             +Y  ++  LCK G  DL    L++M   +  P    YN I   LC+   + +A  +F+
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
            +  K   P      ++IS LC  G    A ++L +M +    PD +T+S+L+    +EG
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            L EA +++  + +    P I  Y++LI GFC + R D + ++F+ MV+K C P+ +TY 
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 400

Query: 523 ILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQ 561
            L++G      ++    + +E+  R ++  +    + +Q
Sbjct: 401 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439



 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 163/322 (50%), Gaps = 2/322 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   PDV   + L+    K  K  +A ++ + +V   I P    Y+
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYS 365

Query: 139 HLVNFLCRRGNIGYAMQLVE-KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
            L+N  C    +  A Q+ E  V +H F    VTYNTL+KG C + ++ + +++   +++
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSKHCFPD-VVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
           +GL  N  TY+ L++G ++    D A ++  ++++ G  PN+++YN LL GLCK G+ E 
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEK 484

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A+ +F  L      P++ +YNI++  +C  G+ E+   L   +  + + P VV YN +I+
Sbjct: 485 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMIS 544

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
                G  E+A  +  EM   G    +  YN +I    ++G  +   + + +M    ++ 
Sbjct: 545 GFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAG 604

Query: 378 NEGTYNAIAMLCEQGKVQEAFF 399
           +  T   +  +   G++ ++F 
Sbjct: 605 DASTIGLVTNMLHDGRLDKSFL 626


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 256/504 (50%), Gaps = 36/504 (7%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           +++L+DA      MV     P + +  +LL  + K  K    + + E +    I+     
Sbjct: 63  DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L+N  CRR  I  A+ L+ K+ + G++   VT ++L+ G C   +++ ++ L+D++ 
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           + G +P+  T++ L+ G +      EA+ L+D ++ RG +PNLV+Y V++ GLCK G T+
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 257 -----------------------------------DAIELFRDLPAKGFSPSVVSYNILL 281
                                              DA+ LF+++  KG  P+VV+Y+ L+
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
             LC  GRW +A+ LL++M E+ ++P++VT+N LI +    G+  +A ++ D+M +   +
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI 400
               +YN ++   C   ++D   Q  + M+ +   P+  TYN  I   C+  +V++   +
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F+ + ++           +I  L   G+   A ++  +M   G  PD  TYS L+ G+C 
Sbjct: 423 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 482

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
            G L++ALE+F  +++++   DI  Y  +I G CK  + D   ++F  +  KG  PN +T
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 542

Query: 521 YTILVEGLAFENELDIAAGLMKEL 544
           Y  ++ GL  +  L  A  L+K++
Sbjct: 543 YNTMISGLCSKRLLQEAYALLKKM 566



 Score =  219 bits (557), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/535 (27%), Positives = 246/535 (45%), Gaps = 42/535 (7%)

Query: 13  NLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLA--SAQISISPKDSIFTLPNWRVGK 70
           +L  K +R      LY+  + +  F      S  LA     + +  + SI TL +   G 
Sbjct: 106 SLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGY 165

Query: 71  NDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI 130
              K    R++DA   ++ MV  G +PD    T L++ L   NKA +AV +++ +V  G 
Sbjct: 166 CHGK----RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
            P+   Y  +VN LC+RG+   A+ L+ K+E    +   V +NT++  LC +  ++ +L 
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           L   +  KG++PNV TYS L+          +A +LL D+I +   PNLV++N L+    
Sbjct: 282 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 341

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           KEG+  +A +L+ D+  +   P + +YN L+   C   R ++A  +   M  +D  P VV
Sbjct: 342 KEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVV 401

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TYN LI       R E   E+  EM+  G      +Y  +I  L  +G  D   +   QM
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461

Query: 371 ICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           +     P+  TY+ +   LC  GK+++A  +F            DY              
Sbjct: 462 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVF------------DY-------------- 495

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
                    M K     D Y Y++++ GMC+ G +D+  ++F  L      P++  YN +
Sbjct: 496 ---------MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTM 546

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           I G C  +    +  + ++M   G +PN  TY  L+     + +   +A L++E+
Sbjct: 547 ISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 155/321 (48%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ K   P++     L+    K  K  +A ++ + ++   I PD   Y 
Sbjct: 310 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            LVN  C    +  A Q+ E +         VTYNTL+KG C   ++    +L   ++ +
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 429

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  +  TY+ L++G + +   D A K+   +++ G  P++++Y++LL GLC  G+ E A
Sbjct: 430 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 489

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E+F  +        +  Y  ++  +C  G+ ++   L   +  + + P+VVTYN +I+ 
Sbjct: 490 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 549

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L      ++A+ +L +M   G    + +YN +I    ++G      + + +M   R+  +
Sbjct: 550 LCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGD 609

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T   +A +   G++ ++F 
Sbjct: 610 ASTIGLVANMLHDGRLDKSFL 630



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 170/409 (41%), Gaps = 71/409 (17%)

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y  +L     +  +D+A+ L   ++     P++V +N LL+ + K  + +  I L   + 
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 267 AKGFSPSVVSYNIL-----------------------------------LRSLCYEGRWE 291
                  + +YNIL                                   L   C+  R  
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           +A  L+ +M E    P  +T+  LI  L LH +  +A  ++D M + G      +Y  ++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNC 410
             LCK G  DL +  L++M   +   +   +N I   LC+   V +A  +F+ +  K   
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLY--------------------------------- 437
           P      ++IS LC  G    A Q+L                                  
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 352

Query: 438 --EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             +M K    PD +TY+SLV G C    LD+A ++F  +   D  PD+  YN LI GFCK
Sbjct: 353 YDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +R +   E+F+ M ++G V + +TYT L++GL  + + D A  + K++
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461



 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 145/290 (50%), Gaps = 1/290 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +  +A    + M+ +   PD+     L+   C  ++  KA ++ E +V     
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   Y  L+   C+   +    +L  ++   G    TVTY TL++GL   G  + + ++
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
             ++   G+ P++ TYS LL+G      +++A+++ D +     + ++  Y  ++ G+CK
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+ +D  +LF  L  KG  P+VV+YN ++  LC +   +EA  LL +M E+   P+  T
Sbjct: 518 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT 577

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           YN LI +    G    + E++ EM    F   A++   ++A +  +G++D
Sbjct: 578 YNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLD 626



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 140/316 (44%), Gaps = 15/316 (4%)

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
           G P +   ++ L G+C  GR               FS     Y  +LR+  ++ + ++A 
Sbjct: 25  GNPRIAPSSIDLCGMCYWGR--------------AFSSGSGDYREILRNGLHDMKLDDAI 70

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
           GL   M +    PS+V +N L+++++   + +    + ++M R        +YN +I   
Sbjct: 71  GLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 130

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMH 413
           C+  ++ L +  L +M+   Y P+  T +++    C   ++ +A  +   +      P  
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                +I  L        A  ++  M + G  P+  TY  +V G+C+ G  D AL +   
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNK 250

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +E      D+  +N +I   CKY+  D ++ +F+ M  KG  PN +TY+ L+  L     
Sbjct: 251 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 310

Query: 534 LDIAAGLMKELYMREV 549
              A+ L+ ++  +++
Sbjct: 311 WSDASQLLSDMIEKKI 326


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score =  235 bits (600), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 239/437 (54%), Gaps = 1/437 (0%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
            C+ ++   A+ ++  ++  G  P     + L+N  C    I  A+ LV+++ E G++  
Sbjct: 55  FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 114

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T+T+ TL+ GL  H K ++++ L+DR+ ++G +PN+ TY  ++ G  K   +D A  LL+
Sbjct: 115 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN 174

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            + A   E ++V +N ++  LCK    +DA+ LF+++  KG  P+VV+Y+ L+  LC  G
Sbjct: 175 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 234

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           RW +A+ LL++M E+ ++P++VT+N LI +    G+  +A ++ D+M +   +    +YN
Sbjct: 235 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYN 294

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNK 407
            +I   C   ++D   Q  + M+ +   P+  TYN  I   C+  +V++   +F+ + ++
Sbjct: 295 SLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR 354

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                      +I  L   G+   A ++  +M   G  PD  TYS L+ G+C  G L++A
Sbjct: 355 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           LE+F  +++++   DI  Y  +I G CK  + D   ++F  +  KG  PN +TY  ++ G
Sbjct: 415 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 474

Query: 528 LAFENELDIAAGLMKEL 544
           L  +  L  A  L+K++
Sbjct: 475 LCSKRLLQEAYALLKKM 491



 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/501 (28%), Positives = 240/501 (47%), Gaps = 9/501 (1%)

Query: 13  NLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLA--SAQISISPKDSIFTLPNWRVGK 70
           +L  K +R   S  LY+  + +  F      S  LA     + +  + SI TL +   G 
Sbjct: 31  SLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGY 90

Query: 71  NDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI 130
              K    R++DA   ++ MV  G +PD    T L++ L   NKA +AV +++ +V  G 
Sbjct: 91  CHGK----RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 146

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
            P+   Y  +VN LC+RG+I  A  L+ K+E    +   V +NT++  LC +  ++ +L 
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 206

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           L   +  KG++PNV TYS L+          +A +LL D+I +   PNLV++N L+    
Sbjct: 207 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 266

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           KEG+  +A +L  D+  +   P + +YN L+   C   R ++A  +   M  +D  P + 
Sbjct: 267 KEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 326

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TYN LI       R E   E+  EM+  G      +Y  +I  L  +G  D   +   QM
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386

Query: 371 ICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGN 428
           +     P+  TY+ +   LC  GK+++A  +F  +  K    +  Y    +I  +C+ G 
Sbjct: 387 VSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGK 445

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
               + +   ++  G  P+  TY++++ G+C + +L EA  + + ++E+  +PD   YN 
Sbjct: 446 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNT 505

Query: 489 LILGFCKYQRTDLSIEIFQRM 509
           LI    +      S E+ + M
Sbjct: 506 LIRAHLRDGDKAASAELIREM 526



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 154/321 (47%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ K   P++     L+    K  K  +A ++ + ++   I PD   Y 
Sbjct: 235 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYN 294

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A Q+ E +          TYNTL+KG C   ++    +L   ++ +
Sbjct: 295 SLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR 354

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  +  TY+ L++G + +   D A K+   +++ G  P++++Y++LL GLC  G+ E A
Sbjct: 355 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E+F  +        +  Y  ++  +C  G+ ++   L   +  + + P+VVTYN +I+ 
Sbjct: 415 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 474

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L      ++A+ +L +M   G    + +YN +I    ++G      + + +M   R+  +
Sbjct: 475 LCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGD 534

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T   +A +   G++ ++F 
Sbjct: 535 ASTIGLVANMLHDGRLDKSFL 555


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 232/437 (53%), Gaps = 1/437 (0%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
            C+ ++   A+ V+  ++  G  PD    + L+N  C    I  A+ LV+++    +Q  
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           TVT+NTL+ GL  H K ++++ L+DR+  +G +P++FTY  ++ G  K   +D A+ LL 
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +     E ++V Y  ++  LC      DA+ LF ++  KG  P+VV+YN L+R LC  G
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           RW +A+ LL++M E  ++P+VVT++ LI +    G+  +A ++ DEM +   +    +Y+
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNK 407
            +I   C   ++D      + MI +   PN  TYN  I   C+  +V+E   +F+ +  +
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                      +I  L + G+   A ++  +M   G  PD  TYS L+ G+C+ G L++A
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           L +F  L+++   PDI  YN +I G CK  + +   ++F  +  KG  PN I YT ++ G
Sbjct: 485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544

Query: 528 LAFENELDIAAGLMKEL 544
              +   + A  L +E+
Sbjct: 545 FCRKGLKEEADALFREM 561



 Score =  225 bits (573), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 236/456 (51%), Gaps = 9/456 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           S+ V L D    +EY      +P+      L++ L   NKA +AV +++ +V  G  PD 
Sbjct: 167 SEAVALVDQMFVMEY------QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 220

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  +VN LC+RG+I  A+ L++K+E+   +   V Y T++  LC++  +N +L L   
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  KG++PNV TY+ L+          +A +LL D+I R   PN+V+++ L+    KEG+
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
             +A +L+ ++  +   P + +Y+ L+   C   R +EA  +   M  +D  P+VVTYN 
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI       R E+  E+  EM++ G      +YN +I  L + G  D+  +   +M+   
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 375 YSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPA 432
             P+  TY+ +   LC+ GK+++A  +F+ L   +  P   Y  N+ I  +C+ G     
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP-DIYTYNIMIEGMCKAGKVEDG 519

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
           + +   ++  G  P+   Y++++ G CR+G+ +EA  +FR ++E+  +P+   YN LI  
Sbjct: 520 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
             +      S E+ + M + G V +  T ++++  L
Sbjct: 580 RLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 233/453 (51%), Gaps = 1/453 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           +++L+DA      MV     P + +  +LL  + K NK    + + E +    I  D   
Sbjct: 58  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L+N  CRR  +  A+ ++ K+ + G++   VT ++L+ G C   ++++++ L+D++ 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
               +PN  T++ L+ G +      EA+ L+D ++ARG +P+L +Y  ++ GLCK G  +
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            A+ L + +        VV Y  ++ +LC      +A  L  EMD + + P+VVTYN LI
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             L  +GR   A  +L +M     N    +++ +I    KEGK+    +  D+MI R   
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+  TY++ I   C   ++ EA  +F+ + +K   P       +I   C+        ++
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             EM++ G   ++ TY++L++G+ + G  D A +IF+ +  +   PDI  Y+ L+ G CK
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           Y + + ++ +F+ +      P+  TY I++EG+
Sbjct: 478 YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 178/372 (47%), Gaps = 1/372 (0%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           KL+ ++ L   + +    P++  ++ LL    K    D  + L + +       +L SYN
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +L+   C+  +   A+ +   +   G+ P +V+ + LL   C+  R  EA  L+ +M   
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           +  P+ VT+N LI  L LH +  +A  ++D M   G      +Y  ++  LCK G +DL 
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239

Query: 364 VQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
           +  L +M   +   +   Y  I   LC    V +A  +F  + NK   P      ++I  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           LC  G    A ++L +M +    P+  T+S+L+    +EG L EA +++  + +    PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           I  Y++LI GFC + R D +  +F+ M++K C PN +TY  L++G      ++    L +
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 543 ELYMREVLSRST 554
           E+  R ++  + 
Sbjct: 420 EMSQRGLVGNTV 431



 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 159/321 (49%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   P+V   + L+    K  K  +A ++ + ++   I PD   Y+
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A  + E +         VTYNTL+KG C   ++ + ++L   ++++
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L++G ++    D A K+   +++ G  P++++Y++LL GLCK G+ E A
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + +F  L      P + +YNI++  +C  G+ E+   L   +  + + P+V+ Y  +I+ 
Sbjct: 485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G  E+A  +  EM   G    + +YN +I    ++G      + + +M    +  +
Sbjct: 545 FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T + +  +   G++++++ 
Sbjct: 605 ASTISMVINMLHDGRLEKSYL 625



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 268 KGFSPSVVSYNI---LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +G   S  SY+    L R++  + + ++A  L  EM +    PS+V +N L+++++   +
Sbjct: 36  RGVYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNK 95

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            +    + + M     +    SYN +I   C+  ++ L +  L +M+   Y P+  T ++
Sbjct: 96  FDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS 155

Query: 385 IAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
           +    C   ++ EA  +   +   +  P       +I  L        A  ++  M   G
Sbjct: 156 LLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG 215

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
             PD +TY ++V G+C+ G +D AL + + +E+     D+  Y  +I   C Y+  + ++
Sbjct: 216 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            +F  M NKG  PN +TY  L+  L        A+ L+ ++  R++
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 250/504 (49%), Gaps = 36/504 (7%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           +++L+DA      MV     P + + ++LL  + K NK    + + E +   GI  +   
Sbjct: 59  DLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 118

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ L+N  CRR  +  A+ ++ K+ + G++   VT N+L+ G C   +++ ++ L+ ++ 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           + G +P+ FT++ L+ G ++     EA+ L+D ++ +G +P+LV+Y +++ GLCK G  +
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 257 -----------------------------------DAIELFRDLPAKGFSPSVVSYNILL 281
                                              DA+ LF ++  KG  P+VV+YN L+
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
           R LC  GRW +A+ LL++M E  ++P+VVT++ LI +    G+  +A ++ DEM +   +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI 400
               +Y+ +I   C   ++D      + MI +   PN  TYN  I   C+  +V E   +
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F+ +  +           +I    +      A  +  +M   G  PD  TYS L+ G+C 
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
            G ++ AL +F  L+ +   PDI  YN +I G CK  + +   ++F  +  KG  PN +T
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538

Query: 521 YTILVEGLAFENELDIAAGLMKEL 544
           YT ++ G   +   + A  L +E+
Sbjct: 539 YTTMMSGFCRKGLKEEADALFREM 562



 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 217/440 (49%), Gaps = 36/440 (8%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   +  MV  G +PD      L++ L + N+A +AV +++ +V  G  PD   Y 
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+RG+I  A+ L++K+E+   + G V YNT++  LC++  +N +L L   +  K
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++PNV TY+ L+          +A +LL D+I R   PN+V+++ L+    KEG+  +A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L+ ++  +   P + +Y+ L+   C   R +EA  +   M  +D  P+VVTYN LI  
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII-----AR-------------------- 353
                R ++  E+  EM++ G      +Y  +I     AR                    
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465

Query: 354 ----------LCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQ 402
                     LC  GKV+  +   + +   +  P+  TYN  I  +C+ GKV++ + +F 
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
           SL  K   P       ++S  CRKG    A  +  EM + G  PDS TY++L+R   R+G
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585

Query: 463 MLDEALEIFRILEENDYMPD 482
               + E+ R +    ++ D
Sbjct: 586 DKAASAELIREMRSCRFVGD 605



 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 204/437 (46%), Gaps = 34/437 (7%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   AV +   +V S   P    ++ L++ + +       + L E+++  G      TY+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            L+   C   +L+ +L +L ++ K G +P++ T + LL G      + +A+ L+  ++  
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G +P+  ++N L+ GL +  R  +A+ L   +  KG  P +V+Y I++  LC  G  + A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL +M++  + P VV YN +I +L  +     A  +  EM   G      +YN +I  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           LC  G+     + L  MI R+ +PN  T++A+                            
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSAL---------------------------- 332

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                 I    ++G    A ++  EM K    PD +TYSSL+ G C    LDEA  +F +
Sbjct: 333 ------IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 386

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +   D  P++  YN LI GFCK +R D  +E+F+ M  +G V N +TYT L+ G     E
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446

Query: 534 LDIAAGLMKELYMREVL 550
            D A  + K++    VL
Sbjct: 447 CDNAQIVFKQMVSDGVL 463



 Score =  171 bits (434), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 1/372 (0%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           KL+ ++ L   + K    P++  +S LL    K    D  + L + +   G   NL +Y+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +L+   C+  +   A+ +   +   G+ P +V+ N LL   C+  R  +A  L+ +M E 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
              P   T+N LI  L  H R  +A  ++D M   G      +Y  ++  LCK G +DL 
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 364 VQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
           +  L +M   +  P    YN I   LC    V +A  +F  + NK   P      ++I  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           LC  G    A ++L +M +    P+  T+S+L+    +EG L EA +++  + +    PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           I  Y++LI GFC + R D +  +F+ M++K C PN +TY  L++G      +D    L +
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 543 ELYMREVLSRST 554
           E+  R ++  + 
Sbjct: 421 EMSQRGLVGNTV 432



 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 158/321 (49%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   P+V   + L+    K  K  +A ++ + ++   I PD   Y+
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 365

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A  + E +         VTYNTL+KG C   ++++ ++L   ++++
Sbjct: 366 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L+ G ++ R  D A  +   +++ G  P++++Y++LL GLC  G+ E A
Sbjct: 426 GLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + +F  L      P + +YNI++  +C  G+ E+   L   +  + + P+VVTY  +++ 
Sbjct: 486 LVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 545

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G  E+A  +  EM   G    + +YN +I    ++G      + + +M   R+  +
Sbjct: 546 FCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGD 605

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T   +  +   G++ ++F 
Sbjct: 606 ASTIGLVTNMLHDGRLDKSFL 626



 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 1/290 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +L +A    + M+ +   PD+   + L+   C  ++  +A  + E+++     
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 393

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y  L+   C+   +   M+L  ++ + G    TVTY TL+ G     + + +  +
Sbjct: 394 PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIV 453

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
             ++   G+ P++ TYS LL+G      V+ A+ + + +     EP++ +YN+++ G+CK
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+ ED  +LF  L  KG  P+VV+Y  ++   C +G  EEA+ L  EM EE   P   T
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           YN LI +    G    + E++ EM    F V   S   ++  +  +G++D
Sbjct: 574 YNTLIRAHLRDGDKAASAELIREMRSCRF-VGDASTIGLVTNMLHDGRLD 622


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score =  233 bits (593), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 231/467 (49%), Gaps = 36/467 (7%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   ++ MV  G KPD    T L++ L   NKA +AV +++ +V  G  PD   Y 
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+RG+I  A+ L++K+E+   +   V YNT++ GLC +  ++ +L L   +  K
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK 287

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++P+VFTYS L+          +A +LL D+I R   PN+V+++ L+    KEG+  +A
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 347

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L+ ++  +   P + +Y+ L+   C   R +EA  +   M  +D  P+VVTY+ LI  
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                R E+  E+  EM++ G      +Y  +I    +    D       QM+     PN
Sbjct: 408 FCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467

Query: 379 EGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TYN +   LC+ GK+ +A  +F+ L   Q   M                         
Sbjct: 468 ILTYNILLDGLCKNGKLAKAMVVFEYL---QRSTME------------------------ 500

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
                   PD YTY+ ++ GMC+ G +++  E+F  L      P++  YN +I GFC+  
Sbjct: 501 --------PDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKG 552

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             + +  + ++M   G +PN  TY  L+     + + + +A L+KE+
Sbjct: 553 SKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599



 Score =  226 bits (577), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 246/506 (48%), Gaps = 36/506 (7%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           S  ++++DA      MV     P + +  +LL  + K NK    + + E +   GI  D 
Sbjct: 59  SDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDL 118

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y+  +N  CRR  +  A+ ++ K+ + G++   VT ++L+ G C   +++ ++ L+D+
Sbjct: 119 YTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG- 253
           + + G KP+ FT++ L+ G +      EA+ L+D ++ RG +P+LV+Y  ++ GLCK G 
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238

Query: 254 ----------------------------------RTEDAIELFRDLPAKGFSPSVVSYNI 279
                                               +DA+ LF ++  KG  P V +Y+ 
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           L+  LC  GRW +A+ LL++M E  ++P+VVT++ LI +    G+  +A ++ DEM +  
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
            +    +Y+ +I   C   ++D      + MI +   PN  TY+  I   C+  +V+E  
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +F+ +  +           +I    +  +   A  +  +M   G  P+  TY+ L+ G+
Sbjct: 419 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           C+ G L +A+ +F  L+ +   PDI  YN +I G CK  + +   E+F  +  KG  PN 
Sbjct: 479 CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV 538

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
           I Y  ++ G   +   + A  L+K++
Sbjct: 539 IAYNTMISGFCRKGSKEEADSLLKKM 564



 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 190/395 (48%), Gaps = 2/395 (0%)

Query: 162 EHGFQTGTVTYNTLVKG-LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
           E  F + +  Y  +++  L    K++ ++ L   + K    P++  ++ LL    K    
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF 99

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           +  + L + +   G   +L +Y++ +   C+  +   A+ +   +   G+ P +V+ + L
Sbjct: 100 ELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           L   C+  R  +A  L+ +M E    P   T+  LI  L LH +  +A  ++D+M + G 
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFF 399
                +Y  ++  LCK G +DL +  L +M   +   +   YN I   LC+   + +A  
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +F  + NK   P      ++IS LC  G    A ++L +M +    P+  T+S+L+    
Sbjct: 280 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           +EG L EA +++  + +    PDI  Y++LI GFC + R D +  +F+ M++K C PN +
Sbjct: 340 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 399

Query: 520 TYTILVEGLAFENELDIAAGLMKELYMREVLSRST 554
           TY+ L++G      ++    L +E+  R ++  + 
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 434



 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 160/321 (49%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   P+V   + L+    K  K  +A ++ + ++   I PD   Y+
Sbjct: 308 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A  + E +         VTY+TL+KG C   ++ + ++L   ++++
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR 427

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L+ G ++ R  D A  +   +++ G  PN+++YN+LL GLCK G+   A
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 487

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + +F  L      P + +YNI++  +C  G+ E+   L   +  + +SP+V+ YN +I+ 
Sbjct: 488 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG 547

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G  E+A  +L +M   G    + +YN +I    ++G  +   + + +M    ++ +
Sbjct: 548 FCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T   +  +   G++ ++F 
Sbjct: 608 ASTIGLVTNMLHDGRLDKSFL 628



 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 138/308 (44%), Gaps = 22/308 (7%)

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANG---------------------LLAEMDE 302
           +L   G  P+V S+  L  S C+E  +  A+G                     L  +M +
Sbjct: 17  NLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVK 76

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
               PS+V +N L+++++   + E    + ++M   G +    +Y+  I   C+  ++ L
Sbjct: 77  SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSL 136

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
            +  L +M+   Y P+  T +++    C   ++ +A  +   +      P       +I 
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            L        A  ++ +M + G  PD  TY ++V G+C+ G +D AL + + +E+     
Sbjct: 197 GLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 256

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
           D+  YN +I G CKY+  D ++ +F  M NKG  P+  TY+ L+  L        A+ L+
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316

Query: 542 KELYMREV 549
            ++  R++
Sbjct: 317 SDMIERKI 324


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score =  231 bits (590), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 223/436 (51%), Gaps = 1/436 (0%)

Query: 110 CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT 169
           C+  K   A   M  I+  G  PD   ++ L+N LC  G +  A++LV+++ E G +   
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           +T N LV GLC +GK++ ++ L+DR+ + G +PN  TY  +L+   K      AM+LL  
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +  R  + + V Y++++ GLCK+G  ++A  LF ++  KGF   ++ Y  L+R  CY GR
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
           W++   LL +M +  ++P VV ++ LI      G+  +A E+  EM + G +    +Y  
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
           +I   CKE ++D     LD M+ +   PN  T+N  I   C+   + +   +F+ +  + 
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
                     +I   C  G    A ++  EM      PD  +Y  L+ G+C  G  ++AL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           EIF  +E++    DI  YN +I G C   + D + ++F  +  KG  P+  TY I++ GL
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 529 AFENELDIAAGLMKEL 544
             +  L  A  L +++
Sbjct: 538 CKKGSLSEADLLFRKM 553



 Score =  215 bits (547), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 234/467 (50%), Gaps = 1/467 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L+ AF  +  ++  G +PD    + L+  LC   +  +A+ +++ +V  G  P      
Sbjct: 122 KLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLN 181

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            LVN LC  G +  A+ L++++ E GFQ   VTY  ++K +C  G+   +++LL ++ ++
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            +K +   YS +++G  K+  +D A  L +++  +G + +++ Y  L+ G C  GR +D 
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L RD+  +  +P VV+++ L+     EG+  EA  L  EM +  +SP  VTY  LI  
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                + ++A  +LD M   G      ++N +I   CK   +D  ++   +M  R    +
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TYN  I   CE GK++ A  +FQ + +++  P     K ++  LC  G    A ++  
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           ++ K     D   Y+ ++ GMC    +D+A ++F  L      PD+  YN +I G CK  
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
               +  +F++M   G  PN  TY IL+     E +   +A L++E+
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588



 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 216/416 (51%), Gaps = 3/416 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+++A   ++ MV  G KP +     L+  LC + K   AV +++ +V +G  P+   
Sbjct: 155 EGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  ++  +C+ G    AM+L+ K+EE   +   V Y+ ++ GLC  G L+ +  L + + 
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 274

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            KG K ++  Y+ L+ G       D+  KLL D+I R   P++V+++ L+    KEG+  
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLR 334

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A EL +++  +G SP  V+Y  L+   C E + ++AN +L  M  +   P++ T+NILI
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                    +   E+  +M+  G      +YN +I   C+ GK+++  +   +M+ RR  
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 377 PNEGTYNAIA-MLCEQGKVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
           P+  +Y  +   LC+ G+ ++A  IF+ +  +K    +  Y   +I  +C       A+ 
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY-NIIIHGMCNASKVDDAWD 513

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           +   +   G  PD  TY+ ++ G+C++G L EA  +FR +EE+ + P+   YN LI
Sbjct: 514 LFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 211/421 (50%), Gaps = 1/421 (0%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   AV + + +  S   P    ++ L + + R       + L +++E  G      T +
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            ++   C   KL+ +   + ++ K G +P+  T+S L+ G   E  V EA++L+D ++  
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G +P L++ N L+ GLC  G+  DA+ L   +   GF P+ V+Y  +L+ +C  G+   A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL +M+E  +    V Y+I+I  L   G  + AF + +EM   GF      Y  +I  
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
            C  G+ D   + L  MI R+ +P+   ++A I    ++GK++EA  + + +  +   P 
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                ++I   C++     A  ML  M   G  P+  T++ L+ G C+  ++D+ LE+FR
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            +     + D   YN LI GFC+  + +++ E+FQ MV++   P+ ++Y IL++GL    
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG 471

Query: 533 E 533
           E
Sbjct: 472 E 472



 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 157/280 (56%), Gaps = 2/280 (0%)

Query: 76  KEVRLNDAF-LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           KE +L +A  LH E M+ +G  PD    T L+   CK N+  KA  +++++V  G  P+ 
Sbjct: 329 KEGKLREAEELHKE-MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             +  L+N  C+   I   ++L  K+   G    TVTYNTL++G C  GKL  + +L   
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  + ++P++ +Y  LL+G       ++A+++ + I     E ++  YN+++ G+C   +
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            +DA +LF  LP KG  P V +YNI++  LC +G   EA+ L  +M+E+  SP+  TYNI
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
           LI +    G   ++ ++++E+ R GF+V A++   ++  L
Sbjct: 568 LIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML 607



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 187/388 (48%), Gaps = 7/388 (1%)

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
           G V+Y   ++      K + ++ L   +T+   +P +  +S L     + +  D  + L 
Sbjct: 36  GKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLC 95

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
             +  +G   NL + ++++   C+  +   A      +   G+ P  V+++ L+  LC E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           GR  EA  L+  M E    P+++T N L+  L L+G+   A  ++D M  +GF     +Y
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSL-- 404
            P++  +CK G+  L ++ L +M  R+   +   Y+ I   LC+ G +  AF +F  +  
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 405 -GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
            G K +  ++     +I   C  G      ++L +M K   TPD   +S+L+    +EG 
Sbjct: 276 KGFKADIIIY---TTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           L EA E+ + + +    PD   Y +LI GFCK  + D +  +   MV+KGC PN  T+ I
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 524 LVEGLAFENELDIAAGLMKELYMREVLS 551
           L+ G    N +D    L +++ +R V++
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVA 420



 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 188/397 (47%), Gaps = 35/397 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+  L++AF     M  KG K D+   T L+   C + +     +++  ++   I 
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   ++ L++   + G +  A +L +++ + G    TVTY +L+ G C   +L+++  +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           LD +  KG  PN+ T++ L+ G  K   +D+ ++L   +  RG   + V+YN L+ G C+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+ E A ELF+++ ++   P +VSY ILL  LC  G  E+A  +  ++++  +   +  
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YNI+I  +    + + A+++   +   G      +YN +I  LCK+G +        +M 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
              +SPN  TYN                I   LG                    +G+   
Sbjct: 555 EDGHSPNGCTYN--------------ILIRAHLG--------------------EGDATK 580

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           + +++ E+ +CGF+ D+ T   +V  M  +G L ++ 
Sbjct: 581 SAKLIEEIKRCGFSVDASTV-KMVVDMLSDGRLKKSF 616


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 239/452 (52%), Gaps = 12/452 (2%)

Query: 108 DLC-KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQ 166
           DLC K NK  +     ++I+G        CY  L+N L R G +    Q+  ++ E    
Sbjct: 164 DLCRKMNKDERFELKYKLIIG--------CYNTLLNSLARFGLVDEMKQVYMEMLEDKVC 215

Query: 167 TGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKL 226
               TYN +V G C  G + ++ Q + ++ + GL P+ FTY+ L+ G  + + +D A K+
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 227 LDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
            +++  +G   N V+Y  L+ GLC   R ++A++LF  +      P+V +Y +L++SLC 
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 287 EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
             R  EA  L+ EM+E  + P++ TY +LI SL    + E+A E+L +M   G      +
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGN 406
           YN +I   CK G ++  V  ++ M  R+ SPN  TYN +     +  V +A  +   +  
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLE 455

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
           ++  P      ++I   CR GN   A+++L  M   G  PD +TY+S++  +C+   ++E
Sbjct: 456 RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE 515

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           A ++F  LE+    P++  Y ALI G+CK  + D +  + ++M++K C+PN +T+  L+ 
Sbjct: 516 ACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIH 575

Query: 527 GLAFENELDIAAGL---MKELYMREVLSRSTV 555
           GL  + +L  A  L   M ++ ++  +S  T+
Sbjct: 576 GLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607



 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 236/484 (48%), Gaps = 35/484 (7%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           + +A  ++  +V  G  PD    T L+   C+      A +V   +   G   +   YTH
Sbjct: 234 VEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTH 293

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L++ LC    I  AM L  K+++        TY  L+K LC   + +++L L+  + + G
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           +KPN+ TY+ L++    +   ++A +LL  ++ +G  PN+++YN L+ G CK G  EDA+
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAV 413

Query: 260 ELFRDLPAKGFSPS----------------------------------VVSYNILLRSLC 285
           ++   + ++  SP+                                  VV+YN L+   C
Sbjct: 414 DVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
             G ++ A  LL+ M++  L P   TY  +I SL    R E+A ++ D + + G N    
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV 533

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
            Y  +I   CK GKVD     L++M+ +   PN  T+NA I  LC  GK++EA  + + +
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
                 P       +I  L + G+   A+    +M   G  PD++TY++ ++  CREG L
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            +A ++   + EN   PD+  Y++LI G+    +T+ + ++ +RM + GC P++ T+  L
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713

Query: 525 VEGL 528
           ++ L
Sbjct: 714 IKHL 717



 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 228/467 (48%), Gaps = 21/467 (4%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R ++A   ++ M   G KP++   T L+  LC   K  KA  ++  ++  G++P+   Y 
Sbjct: 338 RKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYN 397

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C+RG I  A+ +VE +E       T TYN L+KG C    +++++ +L+++ ++
Sbjct: 398 ALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLER 456

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            + P+V TY+ L++G  +    D A +LL  +  RG  P+  +Y  ++  LCK  R E+A
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA 516

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +LF  L  KG +P+VV Y  L+   C  G+ +EA+ +L +M  ++  P+ +T+N LI  
Sbjct: 517 CDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHG 576

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L   G+ ++A  + ++M + G   T ++   +I RL K+G  D       QM+     P+
Sbjct: 577 LCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TY   I   C +G++ +A  +   +      P      ++I      G T  AF +L 
Sbjct: 637 AHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLK 696

Query: 438 EMTKCGFTPDSYTYSSLVR------------------GMCREGMLDEALEIFRILEENDY 479
            M   G  P  +T+ SL++                   M      D  +E+   + E+  
Sbjct: 697 RMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSV 756

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMV-NKGCVPNEITYTILV 525
            P+  +Y  LILG C+     ++ ++F  M  N+G  P+E+ +  L+
Sbjct: 757 TPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALL 803



 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 235/528 (44%), Gaps = 55/528 (10%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+ AF     M  KG + +    T L++ LC + +  +A+ +   +      P    YT 
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+  LC       A+ LV+++EE G +    TY  L+  LCS  K  ++ +LL ++ +KG
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L PNV TY+ L+ G  K   +++A+ +++ + +R   PN  +YN L+ G CK      A+
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAM 447

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
            +   +  +   P VV+YN L+   C  G ++ A  LL+ M++  L P   TY  +I SL
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
               R E+A ++ D + + G N     Y  +I   CK GKVD     L++M+ +   PN 
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567

Query: 380 GTYNA-IAMLCEQGKVQEAFFI-----------------------------------FQS 403
            T+NA I  LC  GK++EA  +                                   FQ 
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQ 627

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
           + +    P        I   CR+G    A  M+ +M + G +PD +TYSSL++G    G 
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687

Query: 464 LDEALEIFRILEENDYMPDIDNYNALI--LGFCKYQRT----------------DLSIEI 505
            + A ++ + + +    P    + +LI  L   KY +                 D  +E+
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
            ++MV     PN  +Y  L+ G+     L +A  +   +   E +S S
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795



 Score =  175 bits (444), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 230/475 (48%), Gaps = 21/475 (4%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ KG  P+V     L+   CK      AV V+E++    + P+   Y  L+   C+  N
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SN 442

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  AM ++ K+ E       VTYN+L+ G C  G  + + +LL  +  +GL P+ +TY+ 
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +++   K + V+EA  L D +  +G  PN+V Y  L+ G CK G+ ++A  +   + +K 
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ +++N L+  LC +G+ +EA  L  +M +  L P+V T  ILI  L   G  + A+
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
               +M  SG    A +Y   I   C+EG++      + +M     SP+  TY++ I   
Sbjct: 623 SRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY 682

Query: 389 CEQGKVQEAFFIFQSLGNKQNCP-MHDY---CKNVISM-----------LCRKGNTY--- 430
            + G+   AF + + + +    P  H +    K+++ M           LC   N     
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFD 742

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM-PDIDNYNAL 489
              ++L +M +   TP++ +Y  L+ G+C  G L  A ++F  ++ N+ + P    +NAL
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNAL 802

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +   CK ++ + + ++   M+  G +P   +  +L+ GL  + E +    + + L
Sbjct: 803 LSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 218/461 (47%), Gaps = 20/461 (4%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L  M+ +   PDV     L+   C+S     A R++ ++   G++PD   YT +++ LC+
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
              +  A  L + +E+ G     V Y  L+ G C  GK++++  +L+++  K   PN  T
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           ++ L+ G   +  + EA  L + ++  G +P + +  +L+  L K+G  + A   F+ + 
Sbjct: 570 FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQML 629

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
           + G  P   +Y   +++ C EGR  +A  ++A+M E  +SP + TY+ LI      G+T 
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTN 689

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLC--KEGK----------------VDLVVQCLD 368
            AF+VL  M  +G   +  ++  +I  L   K GK                 D VV+ L+
Sbjct: 690 FAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLE 749

Query: 369 QMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRK 426
           +M+    +PN  +Y  + + +CE G ++ A  +F  +   +     +   N ++S  C+ 
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
                A +++ +M   G  P   +   L+ G+ ++G  +    +F+ L +  Y  D   +
Sbjct: 810 KKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAW 869

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
             +I G  K    +   E+F  M   GC  +  TY++L+EG
Sbjct: 870 KIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score =  158 bits (400), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 204/441 (46%), Gaps = 20/441 (4%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D + +    + A+  L  M  +G  PD    T ++  LCKS +  +A  + + +   G+ 
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   YT L++  C+ G +  A  ++EK+        ++T+N L+ GLC+ GKL ++  L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
            +++ K GL+P V T + L+    K+   D A      +++ G +P+  +Y   +   C+
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           EGR  DA ++   +   G SP + +Y+ L++     G+   A  +L  M +    PS  T
Sbjct: 650 EGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709

Query: 312 YNILITSL--SLHGRT----------------EQAFEVLDEMTRSGFNVTATSYNPIIAR 353
           +  LI  L    +G+                 +   E+L++M        A SY  +I  
Sbjct: 710 FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG 769

Query: 354 LCKEGKVDLVVQCLDQMICRR-YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP 411
           +C+ G + +  +  D M      SP+E  +NA ++  C+  K  EA  +   +    + P
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP 829

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
             + CK +I  L +KG       +   + +CG+  D   +  ++ G+ ++G+++   E+F
Sbjct: 830 QLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELF 889

Query: 472 RILEENDYMPDIDNYNALILG 492
            ++E+N        Y+ LI G
Sbjct: 890 NVMEKNGCKFSSQTYSLLIEG 910


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 242/491 (49%), Gaps = 36/491 (7%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG    +   + ++   C+  K   A   M  I+  G  PD   +  L+N LC    
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A++LV+++ E G +   +T NTLV GLC +GK++ ++ L+DR+ + G +PN  TY  
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +L    K      AM+LL  +  R  + + V Y++++ GLCK+G  ++A  LF ++  KG
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F   +++YN L+   C  GRW++   LL +M +  +SP+VVT+++LI S    G+  +A 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           ++L EM + G      +YN +I   CKE +++  +Q +D MI +   P+  T+N  I   
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C+  ++ +   +F+ +  +           ++   C+ G    A ++  EM      PD 
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE---- 504
            +Y  L+ G+C  G L++ALEIF  +E++    DI  Y  +I G C   + D + +    
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCS 533

Query: 505 -------------------------------IFQRMVNKGCVPNEITYTILVEGLAFENE 533
                                          +F++M  +G  P+E+TY IL+     +++
Sbjct: 534 LPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDD 593

Query: 534 LDIAAGLMKEL 544
              AA L++E+
Sbjct: 594 ATTAAELIEEM 604



 Score =  222 bits (566), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 233/461 (50%), Gaps = 4/461 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+++A   ++ MV  G KP +     L+  LC + K   AV +++ +V +G  P+   
Sbjct: 171 ECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVT 230

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  ++N +C+ G    AM+L+ K+EE   +   V Y+ ++ GLC  G L+ +  L + + 
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            KG K ++ TY+ L+ G       D+  KLL D+I R   PN+V+++VL+    KEG+  
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A +L +++  +G +P+ ++YN L+   C E R EEA  ++  M  +   P ++T+NILI
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                  R +   E+  EM+  G      +YN ++   C+ GK+++  +   +M+ RR  
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470

Query: 377 PNEGTYNAIA-MLCEQGKVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
           P+  +Y  +   LC+ G++++A  IF  +  +K    +  Y   +I  +C       A+ 
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI-IIHGMCNASKVDDAWD 529

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +   +   G   D+  Y+ ++  +CR+  L +A  +FR + E  + PD   YN LI    
Sbjct: 530 LFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHL 589

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
                  + E+ + M + G  P +++   +V  +    ELD
Sbjct: 590 GDDDATTAAELIEEMKSSG-FPADVSTVKMVINMLSSGELD 629



 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 166/314 (52%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+  L++AF     M  KG K D+     L+   C + +     +++  ++   I 
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   ++ L++   + G +  A QL++++ + G    T+TYN+L+ G C   +L +++Q+
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           +D +  KG  P++ T++ L+ G  K   +D+ ++L  ++  RG   N V+YN L+ G C+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+ E A +LF+++ ++   P +VSY ILL  LC  G  E+A  +  ++++  +   +  
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y I+I  +    + + A+++   +   G  + A +YN +I+ LC++  +        +M 
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMT 570

Query: 372 CRRYSPNEGTYNAI 385
              ++P+E TYN +
Sbjct: 571 EEGHAPDELTYNIL 584



 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 194/401 (48%), Gaps = 12/401 (2%)

Query: 162 EHGFQTGT---VTY-NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           E GF T +   ++Y + L  GL    K + ++ L   + +    P V  ++ L     K 
Sbjct: 43  ERGFSTFSDRNLSYRDKLSSGLVGI-KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKT 101

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           +  +  + L   + ++G   ++ + ++++   C+  +   A      +   G+ P  V +
Sbjct: 102 KQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIF 161

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N LL  LC E R  EA  L+  M E    P+++T N L+  L L+G+   A  ++D M  
Sbjct: 162 NTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE 221

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQE 396
           +GF     +Y P++  +CK G+  L ++ L +M  R    +   Y+ I   LC+ G +  
Sbjct: 222 TGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDN 281

Query: 397 AFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           AF +F  +   G K +   ++    +I   C  G      ++L +M K   +P+  T+S 
Sbjct: 282 AFNLFNEMEIKGFKADIITYN---TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+    +EG L EA ++ + + +    P+   YN+LI GFCK  R + +I++   M++KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRST 554
           C P+ +T+ IL+ G    N +D    L +E+ +R V++ + 
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 1/290 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +L +A   L+ M+ +G  P+      L+   CK N+  +A++++++++  G  
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD 400

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   +  L+N  C+   I   ++L  ++   G    TVTYNTLV+G C  GKL  + +L
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +  + ++P++ +Y  LL+G      +++A+++   I     E ++  Y +++ G+C 
Sbjct: 461 FQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCN 520

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
             + +DA +LF  LP KG      +YNI++  LC +    +A+ L  +M EE  +P  +T
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELT 580

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           YNILI +         A E+++EM  SGF    ++   +I  L   G++D
Sbjct: 581 YNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML-SSGELD 629


>AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4184163-4186076 REVERSE
           LENGTH=637
          Length = 637

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 221/416 (53%), Gaps = 3/416 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+++A   ++ MV  G KPD+     L+  LC S K  +A+ +++ +V  G  P+A  
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  ++N +C+ G    AM+L+ K+EE   +   V Y+ ++ GLC HG L+ +  L + + 
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            KG+  N+ TY+ L+ G       D+  KLL D+I R   PN+V+++VL+    KEG+  
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A EL +++  +G +P  ++Y  L+   C E   ++AN ++  M  +   P++ T+NILI
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                  R +   E+  +M+  G      +YN +I   C+ GK+++  +   +M+ R+  
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 377 PNEGTYNAIA-MLCEQGKVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
           PN  TY  +   LC+ G+ ++A  IF+ +  +K    +  Y   +I  +C       A+ 
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY-NIIIHGMCNASKVDDAWD 529

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           +   +   G  P   TY+ ++ G+C++G L EA  +FR +EE+ + PD   YN LI
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585



 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 231/453 (50%), Gaps = 1/453 (0%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           KG   ++   + ++   C+  K   A   M  I+  G  P+   ++ L+N LC  G +  
Sbjct: 117 KGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A++LV+++ E G +   +T NTLV GLC  GK  +++ L+D++ + G +PN  TY  +L 
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              K      AM+LL  +  R  + + V Y++++ GLCK G  ++A  LF ++  KG + 
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           ++++YNIL+   C  GRW++   LL +M +  ++P+VVT+++LI S    G+  +A E+ 
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
            EM   G      +Y  +I   CKE  +D   Q +D M+ +   PN  T+N  I   C+ 
Sbjct: 357 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
            ++ +   +F+ +  +           +I   C  G    A ++  EM      P+  TY
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
             L+ G+C  G  ++ALEIF  +E++    DI  YN +I G C   + D + ++F  +  
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           KG  P   TY I++ GL  +  L  A  L +++
Sbjct: 537 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569



 Score =  215 bits (548), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 233/463 (50%), Gaps = 1/463 (0%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           AF  +  ++  G +P+    + L+  LC   +  +A+ +++ +V  G  PD      LVN
Sbjct: 142 AFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVN 201

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
            LC  G    AM L++K+ E+G Q   VTY  ++  +C  G+   +++LL ++ ++ +K 
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +   YS +++G  K   +D A  L +++  +G   N+++YN+L+ G C  GR +D  +L 
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
           RD+  +  +P+VV++++L+ S   EG+  EA  L  EM    ++P  +TY  LI      
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
              ++A +++D M   G +    ++N +I   CK  ++D  ++   +M  R    +  TY
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441

Query: 383 NA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
           N  I   CE GK+  A  +FQ + +++  P     K ++  LC  G +  A ++  ++ K
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
                D   Y+ ++ GMC    +D+A ++F  L      P +  YN +I G CK      
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +  +F++M   G  P+  TY IL+     + +   +  L++EL
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604



 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 216/421 (51%), Gaps = 1/421 (0%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           KA  A+ +   ++ S  +P    ++ L + + +       + L +++E  G      T +
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            ++   C   KL  +   + ++ K G +PN  T+S L+ G   E  V EA++L+D ++  
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G +P+L++ N L+ GLC  G+  +A+ L   +   G  P+ V+Y  +L  +C  G+   A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL +M+E ++    V Y+I+I  L  HG  + AF + +EM   G      +YN +I  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
            C  G+ D   + L  MI R+ +PN  T++  I    ++GK++EA  + + + ++   P 
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                ++I   C++ +   A QM+  M   G  P+  T++ L+ G C+   +D+ LE+FR
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            +     + D   YN LI GFC+  + +++ E+FQ MV++   PN +TY IL++GL    
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 487

Query: 533 E 533
           E
Sbjct: 488 E 488



 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 72  DQKSKEVRLNDAF-LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI 130
           D   KE +L +A  LH E M+ +G  PD    T L+   CK N   KA ++++++V  G 
Sbjct: 341 DSFVKEGKLREAEELHKE-MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 399

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
            P+   +  L+N  C+   I   ++L  K+   G    TVTYNTL++G C  GKLN + +
Sbjct: 400 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           L   +  + + PN+ TY  LL+G       ++A+++ + I     E ++  YN+++ G+C
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
              + +DA +LF  LP KG  P V +YNI++  LC +G   EA  L  +M+E+  +P   
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGW 579

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
           TYNILI +    G   ++ ++++E+ R GF+V A++   +I  L
Sbjct: 580 TYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623



 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 7/357 (1%)

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           P V  +S L     K +  D  + L   +  +G   NL + ++++   C+  +   A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
              +   G+ P+ ++++ L+  LC EGR  EA  L+  M E    P ++T N L+  L L
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
            G+  +A  ++D+M   G    A +Y P++  +CK G+  L ++ L +M  R    +   
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 382 YNAIA-MLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
           Y+ I   LC+ G +  AF +F  +   G   N   ++    +I   C  G      ++L 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI---LIGGFCNAGRWDDGAKLLR 322

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           +M K    P+  T+S L+    +EG L EA E+ + +      PD   Y +LI GFCK  
Sbjct: 323 DMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKEN 382

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRST 554
             D + ++   MV+KGC PN  T+ IL+ G    N +D    L +++ +R V++ + 
Sbjct: 383 HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 439



 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 184/397 (46%), Gaps = 35/397 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   L++AF     M  KG   ++     L+   C + +     +++  ++   I 
Sbjct: 271 DGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN 330

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   ++ L++   + G +  A +L +++   G    T+TY +L+ G C    L+++ Q+
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           +D +  KG  PN+ T++ L+ G  K   +D+ ++L   +  RG   + V+YN L+ G C+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+   A ELF+++ ++   P++V+Y ILL  LC  G  E+A  +  ++++  +   +  
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YNI+I  +    + + A+++   +   G      +YN +I  LCK+G +        +M 
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME 570

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
              ++P+  TYN                I   LG+                    G+   
Sbjct: 571 EDGHAPDGWTYN--------------ILIRAHLGD--------------------GDATK 596

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           + +++ E+ +CGF+ D+ T   +V  M  +G L ++ 
Sbjct: 597 SVKLIEELKRCGFSVDASTI-KMVIDMLSDGRLKKSF 632



 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 150/297 (50%), Gaps = 1/297 (0%)

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           + +DAI+LFRD+      P+V+ ++ L  ++    +++    L  +M+ + ++ ++ T +
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           I+I       +   AF  + ++ + G+     +++ +I  LC EG+V   ++ +D+M+  
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187

Query: 374 RYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
            + P+  T N +   LC  GK  EA  +   +      P       V++++C+ G T  A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
            ++L +M +     D+  YS ++ G+C+ G LD A  +F  +E      +I  YN LI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           FC   R D   ++ + M+ +   PN +T+++L++    E +L  A  L KE+  R +
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
            FS   +SY   LRS   + + ++A  L  +M      P+V+ ++ L ++++   + +  
Sbjct: 48  AFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLV 107

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAM 387
             +  +M   G      + + +I   C+  K+ L    + ++I   Y PN  T++  I  
Sbjct: 108 LALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING 167

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LC +G+V EA  +   +    + P       +++ LC  G    A  ++ +M + G  P+
Sbjct: 168 LCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN 227

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
           + TY  ++  MC+ G    A+E+ R +EE +   D   Y+ +I G CK+   D +  +F 
Sbjct: 228 AVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFN 287

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            M  KG   N ITY IL+ G       D  A L++++  R++
Sbjct: 288 EMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score =  228 bits (581), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 230/452 (50%), Gaps = 3/452 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+++A   ++ MV  G +PD    T L++ L + NKA +AV ++E +V  G  PD   Y 
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++N LC+RG    A+ L+ K+E+   +   V Y+T++  LC +  ++ +L L   +  K
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++P+VFTYS L+          +A +LL D++ R   PN+V++N L+    KEG+  +A
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEA 329

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +LF ++  +   P++V+YN L+   C   R +EA  +   M  +D  P VVTYN LI  
Sbjct: 330 EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLING 389

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                +     E+  +M+R G      +Y  +I    +    D       QM+     PN
Sbjct: 390 FCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449

Query: 379 EGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM-LCRKGNTYPAFQML 436
             TYN +   LC+ GK+++A  +F+ L   +  P   Y  N++S  +C+ G     + + 
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP-DIYTYNIMSEGMCKAGKVEDGWDLF 508

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             ++  G  PD   Y++++ G C++G+ +EA  +F  ++E+  +PD   YN LI    + 
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
                S E+ + M +     +  TY ++ + L
Sbjct: 569 GDKAASAELIKEMRSCRFAGDASTYGLVTDML 600



 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 231/450 (51%), Gaps = 8/450 (1%)

Query: 87  LEYMVGKGQKPDVAQATQLLYD-------LCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
            + ++  G+K ++   +  LY        LC+ ++   A+ ++  ++  G  P       
Sbjct: 81  FDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNS 140

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+N  C    I  A+ LV+++ E G+Q  TVT+ TLV GL  H K ++++ L++R+  KG
Sbjct: 141 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            +P++ TY  ++ G  K    D A+ LL+ +     E ++V Y+ ++  LCK    +DA+
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
            LF ++  KG  P V +Y+ L+  LC  GRW +A+ LL++M E  ++P+VVT+N LI + 
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
           +  G+  +A ++ DEM +   +    +YN +I   C   ++D   Q    M+ +   P+ 
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDV 380

Query: 380 GTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TYN  I   C+  KV +   +F+ +  +           +I    +  +   A  +  +
Sbjct: 381 VTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ 440

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M   G  P+  TY++L+ G+C+ G L++A+ +F  L+++   PDI  YN +  G CK  +
Sbjct: 441 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +   ++F  +  KG  P+ I Y  ++ G 
Sbjct: 501 VEDGWDLFCSLSLKGVKPDVIAYNTMISGF 530



 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 174/348 (50%), Gaps = 1/348 (0%)

Query: 182 HGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS 241
           H KL++++ L   + K    P++  +S LL    K +  D  +   + +   G   NL +
Sbjct: 43  HLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYT 102

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           YN+++  LC+  +   A+ +   +   G+ PS+V+ N LL   C+  R  EA  L+ +M 
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           E    P  VT+  L+  L  H +  +A  +++ M   G      +Y  +I  LCK G+ D
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 362 LVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
           L +  L++M   +   +   Y+  I  LC+   V +A  +F  + NK   P      ++I
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
           S LC  G    A ++L +M +    P+  T++SL+    +EG L EA ++F  + +    
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           P+I  YN+LI GFC + R D + +IF  MV+K C+P+ +TY  L+ G 
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390



 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 179/397 (45%), Gaps = 35/397 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   ++DA      M  KG +PDV   + L+  LC   +   A R++  ++   I 
Sbjct: 248 DSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKIN 307

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   +  L++   + G +  A +L +++ +       VTYN+L+ G C H +L+++ Q+
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +  K   P+V TY+ L+ G  K + V + M+L  D+  RG   N V+Y  L+ G  +
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               ++A  +F+ + + G  P++++YN LL  LC  G+ E+A  +   + +  + P + T
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT 487

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YNI+   +   G+ E  +++   ++  G      +YN +I+  CK+G  +       +M 
Sbjct: 488 YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK 547

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
                P+ GTYN +                                  I    R G+   
Sbjct: 548 EDGPLPDSGTYNTL----------------------------------IRAHLRDGDKAA 573

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           + +++ EM  C F  D+ TY  LV  M  +G LD+  
Sbjct: 574 SAELIKEMRSCRFAGDASTY-GLVTDMLHDGRLDKGF 609



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 152/321 (47%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   P+V     L+    K  K  +A ++ + ++   I P+   Y 
Sbjct: 290 RWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A Q+   +         VTYNTL+ G C   K+   ++L   ++++
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L+ G ++    D A  +   +++ G  PN+++YN LL GLCK G+ E A
Sbjct: 410 GLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + +F  L      P + +YNI+   +C  G+ E+   L   +  + + P V+ YN +I+ 
Sbjct: 470 MVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISG 529

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G  E+A+ +  +M   G    + +YN +I    ++G      + + +M   R++ +
Sbjct: 530 FCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGD 589

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             TY  +  +   G++ + F 
Sbjct: 590 ASTYGLVTDMLHDGRLDKGFL 610



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 14/293 (4%)

Query: 271 SPSVVSYNILLRSLCYEG-------------RWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           SPS     I    L Y+G             + +EA  L  EM +    PS+V ++ L++
Sbjct: 14  SPSFCLRGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLS 73

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           +++   + +      ++M   G +    +YN +I  LC+  ++   +  L +M+   Y P
Sbjct: 74  AIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGP 133

Query: 378 NEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           +  T N++    C   ++ EA  +   +      P       ++  L +      A  ++
Sbjct: 134 SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALV 193

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             M   G  PD  TY +++ G+C+ G  D AL +   +E+     D+  Y+ +I   CKY
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKY 253

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           +  D ++ +F  M NKG  P+  TY+ L+  L        A+ L+ ++  R++
Sbjct: 254 RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 243/461 (52%), Gaps = 12/461 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVR-VMEMIVGSGIIPDA 134
           +E  L+ A    E MV  G          +++  CK  +   A+  + EM    G  PD 
Sbjct: 236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             +  LVN LC+ G++ +A+++++ + + G+     TYN+++ GLC  G++ +++++LD+
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQ 355

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  +   PN  TY+ L+    KE  V+EA +L   + ++G  P++ ++N L+ GLC    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
              A+ELF ++ +KG  P   +YN+L+ SLC +G+ +EA  +L +M+    + SV+TYN 
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI       +T +A E+ DEM   G +  + +YN +I  LCK  +V+   Q +DQMI   
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query: 375 YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
             P++ TYN+ +   C  G +++A  I Q++ +    P       +IS LC+ G    A 
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALILG 492
           ++L  +   G     + Y+ +++G+ R+    EA+ +FR +LE+N+  PD  +Y  +  G
Sbjct: 596 KLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRG 655

Query: 493 FCK-----YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            C       +  D  +E+ +    KG VP   +  +L EGL
Sbjct: 656 LCNGGGPIREAVDFLVELLE----KGFVPEFSSLYMLAEGL 692



 Score =  222 bits (566), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 239/456 (52%), Gaps = 8/456 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G KPDV+    L+  LC++++ R A+ ++E +   G++PD   +T ++      G++  A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFTYSFLLE 212
           +++ E++ E G     V+ N +V G C  G++  +L  +  ++ + G  P+ +T++ L+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  K   V  A++++D ++  G +P++ +YN +++GLCK G  ++A+E+   +  +  SP
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           + V+YN L+ +LC E + EEA  L   +  + + P V T+N LI  L L      A E+ 
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
           +EM   G      +YN +I  LC +GK+D  +  L QM     + +  TYN  I   C+ 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 392 GKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            K +EA  IF  +   G  +N   ++    +I  LC+      A Q++ +M   G  PD 
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYN---TLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           YTY+SL+   CR G + +A +I + +  N   PDI  Y  LI G CK  R +++ ++ + 
Sbjct: 541 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +  KG       Y  +++GL  + +   A  L +E+
Sbjct: 601 IQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREM 636



 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 210/428 (49%), Gaps = 43/428 (10%)

Query: 124 MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE----KVEEHGFQTGTVTYNTLVKGL 179
           MI   G+ PD   Y  ++N L      G +++LVE    K+   G +    T+N L+K L
Sbjct: 144 MIDEFGLKPDTHFYNRMLNLLVD----GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 180 CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           C   +L  ++ +L+ +   GL P+  T++ +++G  +E  +D A+++ + ++  G   + 
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSN 259

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
           VS NV++ G CKEGR EDA+   +++  + GF P   ++N L+  LC  G  + A  ++ 
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319

Query: 299 EMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
            M +E   P V TYN +I+ L   G  ++A EVLD+M     +    +YN +I+ LCKE 
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 359 KVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN 418
           +V+   +    +  +   P+  T+N++                                 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSL--------------------------------- 406

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
            I  LC   N   A ++  EM   G  PD +TY+ L+  +C +G LDEAL + + +E + 
Sbjct: 407 -IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
               +  YN LI GFCK  +T  + EIF  M   G   N +TY  L++GL     ++ AA
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525

Query: 539 GLMKELYM 546
            LM ++ M
Sbjct: 526 QLMDQMIM 533



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 153/347 (44%), Gaps = 43/347 (12%)

Query: 245 LLTGLCKEGRTEDAIELFRDLPAK--GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           LL  L  +     A+ LF +L +K   FSP    Y  +L  L   G +++   +L +M  
Sbjct: 53  LLDSLRSQPDDSAALRLF-NLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS 111

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLD----------------------------- 333
                   T+ ILI S +     ++   V+D                             
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLK 171

Query: 334 -------EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
                  +M+  G     +++N +I  LC+  ++   +  L+ M      P+E T+  + 
Sbjct: 172 LVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVM 231

Query: 387 M-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM-LCRKGNTYPAFQMLYEMT-KCG 443
               E+G +  A  I + +  +  C   +   NVI    C++G    A   + EM+ + G
Sbjct: 232 QGYIEEGDLDGALRIREQM-VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           F PD YT+++LV G+C+ G +  A+EI  ++ +  Y PD+  YN++I G CK      ++
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           E+  +M+ + C PN +TY  L+  L  EN+++ A  L + L  + +L
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 239/466 (51%), Gaps = 12/466 (2%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +PD      L+  L    K  +AV +++ +V +G  PD   Y  +VN +CR G+   A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + L+ K+EE   +    TY+T++  LC  G ++ ++ L   +  KG+K +V TY+ L+ G
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K    ++   LL D+++R   PN++++NVLL    KEG+ ++A EL++++  +G SP+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           +++YN L+   C + R  EAN +L  M     SP +VT+  LI    +  R +   +V  
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQG 392
            +++ G    A +Y+ ++   C+ GK+ L  +   +M+     P+  TY  +   LC+ G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 393 KVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           K+++A  IF+ L  +K +  +  Y   +I  +C+ G    A+ +   +   G  P+  TY
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMY-TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           + ++ G+C++G L EA  + R +EE+   P+   YN LI    +      S ++ + M +
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDR 557
            G   +  +  +++         D+    MK L +R  LS+ +  R
Sbjct: 572 CGFSADASSIKMVI---------DMLLSAMKRLTLRYCLSKGSKSR 608



 Score =  218 bits (556), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 243/469 (51%), Gaps = 1/469 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           +++ +DA    + M+     P +   ++    + ++ +    +   + +  +GI  +   
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
              ++N  CR     +A  ++ KV + G++  T T+NTL+KGL   GK+++++ L+DR+ 
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           + G +P+V TY+ ++ G  +      A+ LL  +  R  + ++ +Y+ ++  LC++G  +
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            AI LF+++  KG   SVV+YN L+R LC  G+W +   LL +M   ++ P+V+T+N+L+
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                 G+ ++A E+  EM   G +    +YN ++   C + ++      LD M+  + S
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+  T+ + I   C   +V +   +F+++  +           ++   C+ G    A ++
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             EM   G  PD  TY  L+ G+C  G L++ALEIF  L+++     I  Y  +I G CK
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             + + +  +F  +  KG  PN +TYT+++ GL  +  L  A  L++++
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 149/279 (53%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE +L +A    + M+ +G  P++     L+   C  N+  +A  +++++V +   PD  
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +T L+   C    +   M++   + + G     VTY+ LV+G C  GK+  + +L   +
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 429

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G+ P+V TY  LL+G      +++A+++ +D+     +  +V Y  ++ G+CK G+ 
Sbjct: 430 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKV 489

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           EDA  LF  LP KG  P+V++Y +++  LC +G   EAN LL +M+E+  +P+  TYN L
Sbjct: 490 EDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL 549

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
           I +    G    + ++++EM   GF+  A+S   +I  L
Sbjct: 550 IRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 178/375 (47%), Gaps = 35/375 (9%)

Query: 82  DAFLHL-EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           DA + L + M  KG K  V     L+  LCK+ K      +++ +V   I+P+   +  L
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++   + G +  A +L +++   G     +TYNTL+ G C   +L+++  +LD + +   
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            P++ T++ L++G    + VD+ MK+  +I  RG   N V+Y++L+ G C+ G+ + A E
Sbjct: 365 SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 424

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           LF+++ + G  P V++Y ILL  LC  G+ E+A  +  ++ +  +   +V Y  +I  + 
Sbjct: 425 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
             G+ E A+ +   +   G      +Y  +I+ LCK+G +      L +M     +PN+ 
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 381 TYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
           TYN +                                  I    R G+   + +++ EM 
Sbjct: 545 TYNTL----------------------------------IRAHLRDGDLTASAKLIEEMK 570

Query: 441 KCGFTPDSYTYSSLV 455
            CGF+ D+ +   ++
Sbjct: 571 SCGFSADASSIKMVI 585



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 155/342 (45%), Gaps = 1/342 (0%)

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           D+A+ L  ++I     P+LV ++   + + +  +    ++  + L   G + ++ + NI+
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           +   C   +   A  +L ++ +    P   T+N LI  L L G+  +A  ++D M  +G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFF 399
                +YN I+  +C+ G   L +  L +M  R    +  TY+ I   LC  G +  A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +F+ +  K          +++  LC+ G       +L +M      P+  T++ L+    
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           +EG L EA E+++ +      P+I  YN L+ G+C   R   +  +   MV   C P+ +
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 520 TYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQ 561
           T+T L++G      +D    + + +  R +++ +    + +Q
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411



 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 7/273 (2%)

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD---EMTR 337
           LRS   + + ++A  L  EM      PS+V ++   ++++   RT+Q   VLD   ++  
Sbjct: 60  LRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIA---RTKQFNLVLDFCKQLEL 116

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQE 396
           +G      + N +I   C+  K       L +++   Y P+  T+N  I  L  +GKV E
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  +   +      P      ++++ +CR G+T  A  +L +M +     D +TYS+++ 
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIID 236

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
            +CR+G +D A+ +F+ +E       +  YN+L+ G CK  + +    + + MV++  VP
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP 296

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           N IT+ +L++    E +L  A  L KE+  R +
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGI 329


>AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2321740-2324382 REVERSE
           LENGTH=880
          Length = 880

 Score =  225 bits (573), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 230/452 (50%), Gaps = 2/452 (0%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGS-GIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           D    T LL   C+    R A++V +++       P++  Y+ L++ LC  G +  A  L
Sbjct: 229 DSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGL 288

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            +++ E G Q  T TY  L+K LC  G ++++  L D +  +G KPNV TY+ L++G  +
Sbjct: 289 KDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCR 348

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           +  ++EA  +   ++     P++++YN L+ G CK+GR   A EL   +  +   P+V +
Sbjct: 349 DGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRT 408

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           +N L+  LC  G+  +A  LL  M +  LSP +V+YN+LI  L   G    A+++L  M 
Sbjct: 409 FNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN 468

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
                    ++  II   CK+GK D+    L  M+ +  S +E T    I  +C+ GK +
Sbjct: 469 CFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTR 528

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           +A FI ++L   +          ++ ML +         ML ++ K G  P   TY++LV
Sbjct: 529 DALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLV 588

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
            G+ R G +  +  I  +++ +  +P++  Y  +I G C++ R + + ++   M + G  
Sbjct: 589 DGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVS 648

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           PN +TYT++V+G     +LD A   ++ +  R
Sbjct: 649 PNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680



 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 201/421 (47%), Gaps = 1/421 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           RL +AF   + M  KG +P     T L+  LC      KA  + + ++  G  P+   YT
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++ LCR G I  A  +  K+ +       +TYN L+ G C  G++  + +LL  + K+
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
             KPNV T++ L+EG  +     +A+ LL  ++  G  P++VSYNVL+ GLC+EG    A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L   +      P  +++  ++ + C +G+ + A+  L  M  + +S   VT   LI  
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           +   G+T  A  +L+ + +     T  S N I+  L K  KV   +  L ++      P+
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580

Query: 379 EGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TY  +   L   G +  +F I + +      P       +I+ LC+ G    A ++L 
Sbjct: 581 VVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLS 640

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
            M   G +P+  TY+ +V+G    G LD ALE  R + E  Y  +   Y++L+ GF   Q
Sbjct: 641 AMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQ 700

Query: 498 R 498
           +
Sbjct: 701 K 701



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 220/474 (46%), Gaps = 27/474 (5%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+ R+  AF  L  M  +  KP+V    +L+  LC+  K  KAV +++ ++ +G+ PD  
Sbjct: 383 KDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIV 442

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L++ LCR G++  A +L+  +     +   +T+  ++   C  GK + +   L  +
Sbjct: 443 SYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLM 502

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +KG+  +  T + L++G  K     +A+ +L+ ++         S NV+L  L K  + 
Sbjct: 503 LRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKV 562

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++ + +   +   G  PSVV+Y  L+  L   G    +  +L  M      P+V  Y I+
Sbjct: 563 KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTII 622

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I  L   GR E+A ++L  M  SG +    +Y  ++      GK+D  ++ +  M+ R Y
Sbjct: 623 INGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY 682

Query: 376 SPNEGTYNAIA---MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYP 431
             N+  Y+++    +L ++G           +  ++  P    C N +IS++ + G    
Sbjct: 683 ELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDP---ECINELISVVEQLGGCIS 739

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALI 490
                     C F         LV  +C+EG  DE+ ++ + +LE   ++      + ++
Sbjct: 740 GL--------CIF---------LVTRLCKEGRTDESNDLVQNVLERGVFLE--KAMDIIM 780

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             +C  ++    +E+   ++  G VP+  ++ ++++GL  E + + A  L+ EL
Sbjct: 781 ESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERARELVMEL 834



 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 184/427 (43%), Gaps = 49/427 (11%)

Query: 179 LCSHGKL----NQSLQLLDRLTKKGL--KPNVFTYSFLLEGAYKERGVDEAMKLLDDII- 231
           +C H        Q  QLL  +   GL    +    + + E +  E+ + + M   D++  
Sbjct: 93  VCKHSSYCFDPTQKNQLLKLIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFDELRE 152

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
             G   N   Y+ LL  L K      A   +R + A GF   ++ Y  ++ +LC  G  E
Sbjct: 153 VFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTE 212

Query: 292 EANGLLAEM------------------------------------DEEDLSPSVVTYNIL 315
            A   ++++                                     E   +P+ V+Y+IL
Sbjct: 213 AAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSIL 272

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I  L   GR E+AF + D+M   G   +  +Y  +I  LC  G +D      D+MI R  
Sbjct: 273 IHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGC 332

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
            PN  TY   I  LC  GK++EA  + + +   +  P       +I+  C+ G   PAF+
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L  M K    P+  T++ L+ G+CR G   +A+ + + + +N   PDI +YN LI G C
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC 452

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA---GLM--KELYMREV 549
           +    + + ++   M      P+ +T+T ++     + + D+A+   GLM  K + + EV
Sbjct: 453 REGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEV 512

Query: 550 LSRSTVD 556
              + +D
Sbjct: 513 TGTTLID 519



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 185/404 (45%), Gaps = 27/404 (6%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   +E  +N A+  L  M     +PD    T ++   CK  KA  A   + +++  GI 
Sbjct: 449 DGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGIS 508

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D    T L++ +C+ G    A+ ++E + +    T   + N ++  L    K+ + L +
Sbjct: 509 LDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAM 568

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L ++ K GL P+V TY+ L++G  +   +  + ++L+ +   G  PN+  Y +++ GLC+
Sbjct: 569 LGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQ 628

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            GR E+A +L   +   G SP+ V+Y ++++     G+ + A   +  M E     +   
Sbjct: 629 FGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRI 688

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y+ L+    L   +++  +  +E T S   +  T  +P               +C++++I
Sbjct: 689 YSSLLQGFVL---SQKGIDNSEESTVSDIALRET--DP---------------ECINELI 728

Query: 372 CRRYSPNEGTYNAIAM-----LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
                   G  + + +     LC++G+  E+  + Q++  ++   +      ++   C K
Sbjct: 729 -SVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNV-LERGVFLEKAMDIIMESYCSK 786

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                  +++  + K GF P   ++  +++G+ +EG  + A E+
Sbjct: 787 KKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERAREL 830


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score =  221 bits (564), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/493 (29%), Positives = 237/493 (48%), Gaps = 66/493 (13%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK  R+N+A   LE M   G  PD      ++  LCK ++  +A +++  ++  G  PD 
Sbjct: 263 SKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDD 322

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEE----------HGFQT----------------- 167
             Y +L+N LC+ G +  A  L  ++ +          HGF T                 
Sbjct: 323 ITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382

Query: 168 -GTV----TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            G V    TYN+L+ G    G +  +L++L  +  KG KPNV++Y+ L++G  K   +DE
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDE 442

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A  +L+++ A G +PN V +N L++  CKE R  +A+E+FR++P KG  P V ++N L+ 
Sbjct: 443 AYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS 502

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
            LC     + A  LL +M  E +  + VTYN LI +    G  ++A ++++EM   G  +
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQ 402
              +YN +I  LC+ G+VD      ++M+   ++P+  + N +                 
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNIL----------------- 605

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
                            I+ LCR G    A +   EM   G TPD  T++SL+ G+CR G
Sbjct: 606 -----------------INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            +++ L +FR L+     PD   +N L+   CK      +  +    +  G VPN  T++
Sbjct: 649 RIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWS 708

Query: 523 ILVEGLAFENELD 535
           IL++ +  +  LD
Sbjct: 709 ILLQSIIPQETLD 721



 Score =  212 bits (540), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 232/455 (50%), Gaps = 14/455 (3%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           ++ A   L  M   G  P+      L++ L K N+  +A++++E +   G +PDA  +  
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++  LC+   I  A ++V ++   GF    +TY  L+ GLC  G+++ +  L  R+ K  
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK-- 350

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDA 258
             P +  ++ L+ G      +D+A  +L D++   G  P++ +YN L+ G  KEG    A
Sbjct: 351 --PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E+  D+  KG  P+V SY IL+   C  G+ +EA  +L EM  + L P+ V +N LI++
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                R  +A E+  EM R G      ++N +I+ LC+  ++   +  L  MI      N
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNK---QNCPMHDYCKN-VISMLCRKGNTYPAF 433
             TYN  I     +G+++EA    + L N+   Q  P+ +   N +I  LCR G    A 
Sbjct: 529 TVTYNTLINAFLRRGEIKEA----RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            +  +M + G  P + + + L+ G+CR GM++EA+E  + +      PDI  +N+LI G 
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           C+  R +  + +F+++  +G  P+ +T+  L+  L
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679



 Score =  195 bits (495), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 230/457 (50%), Gaps = 6/457 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +   P +     ++   C  N+   A+ ++  +   G +P++  Y  L++ L +   
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+QL+E++   G      T+N ++ GLC   ++N++ ++++R+  +G  P+  TY +
Sbjct: 268 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL-PAK 268
           L+ G  K   VD A     D+  R  +P +V +N L+ G    GR +DA  +  D+  + 
Sbjct: 328 LMNGLCKIGRVDAA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G  P V +YN L+     EG    A  +L +M  +   P+V +Y IL+      G+ ++A
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAM 387
           + VL+EM+  G       +N +I+  CKE ++   V+   +M  +   P+  T+N+ I+ 
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LCE  +++ A ++ + + ++           +I+   R+G    A +++ EM   G   D
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             TY+SL++G+CR G +D+A  +F  +  + + P   + N LI G C+    + ++E  +
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            MV +G  P+ +T+  L+ GL     ++    + ++L
Sbjct: 624 EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKL 660



 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 215/454 (47%), Gaps = 6/454 (1%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +P       +L  L   N  + A  V   ++   I P    +  ++   C    I  A+ 
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L+  + +HG    +V Y TL+  L    ++N++LQLL+ +   G  P+  T++ ++ G  
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           K   ++EA K+++ ++ RG  P+ ++Y  L+ GLCK GR + A +LF  +P     P +V
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIV 354

Query: 276 SYNILLRSLCYEGRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
            +N L+      GR ++A  +L++M     + P V TYN LI      G    A EVL +
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
           M   G      SY  ++   CK GK+D     L++M      PN   +N  I+  C++ +
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           + EA  IF+ +  K   P      ++IS LC       A  +L +M   G   ++ TY++
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+    R G + EA ++   +       D   YN+LI G C+    D +  +F++M+  G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
             P+ I+  IL+ GL     ++ A    KE+ +R
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628



 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 210/444 (47%), Gaps = 41/444 (9%)

Query: 149 NIGYAMQLVEKV-EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           N+  +M+L      ++G++     Y  L+  L ++G+     +LL ++  +G+   VF  
Sbjct: 90  NVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGI---VFKE 146

Query: 208 SFLLE--GAYKERGV-DEAMKLLDDII-ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           S  +     Y + G   +  +L+ ++      EP   SYNV+L  L      + A  +F 
Sbjct: 147 SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFY 206

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           D+ ++   P++ ++ +++++ C     + A  LL +M +    P+ V Y  LI SLS   
Sbjct: 207 DMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCN 266

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
           R  +A ++L+EM   G    A ++N +I  LCK  +++   + +++M+ R ++P++ TY 
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query: 384 AIAM-LCEQGKVQEAFFIFQSLGNKQ----NCPMH--------DYCKNVISMLCRKGNTY 430
            +   LC+ G+V  A  +F  +   +    N  +H        D  K V+S +       
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386

Query: 431 P--------------------AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           P                    A ++L++M   G  P+ Y+Y+ LV G C+ G +DEA  +
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
              +  +   P+   +N LI  FCK  R   ++EIF+ M  KGC P+  T+  L+ GL  
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506

Query: 531 ENELDIAAGLMKELYMREVLSRST 554
            +E+  A  L++++    V++ + 
Sbjct: 507 VDEIKHALWLLRDMISEGVVANTV 530



 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
            Y +LI  L  +G  +    +L +M   G     + +  I+    K G      + + +M
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 371 ICRRYS--PNEGTYNAIAMLCEQGKVQE-AFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
               YS  P   +YN +  +   G   + A  +F  + +++  P       V+   C   
Sbjct: 173 R-NVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN 231

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
               A  +L +MTK G  P+S  Y +L+  + +   ++EAL++   +     +PD + +N
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 291

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            +ILG CK+ R + + ++  RM+ +G  P++ITY  L+ GL     +D A  L   +   
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP 351

Query: 548 EVLSRSTV 555
           E++  +T+
Sbjct: 352 EIVIFNTL 359


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 248/506 (49%), Gaps = 39/506 (7%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           S  ++++DA      MV     P + +  +LL  + K NK    + + E +   GI  D 
Sbjct: 59  SDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDL 118

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y+  +N  CRR  +  A+ ++ K+ + G++   VT ++L+ G C   +++ ++ L+D+
Sbjct: 119 YTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG- 253
           + + G KP+ FT++ L+ G +      EA+ L+D ++ RG +P+LV+Y  ++ GLCK G 
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238

Query: 254 ----------------------------------RTEDAIELFRDLPAKGFSPSVVSYNI 279
                                               E A++LF ++  KG  P+VV+YN 
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           L+  LC  GRW +A+ LL+ M E+ ++P+VVT+N LI +    G+  +A ++ +EM +  
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
            +    +YN +I   C   ++D   Q    M+ +   PN  TYN  I   C+  +V++  
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +F+ +  +           +I    + G+   A  +  +M       D  TYS L+ G+
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           C  G LD AL IF+ L++++   +I  YN +I G CK  +   + ++F  +  K   P+ 
Sbjct: 479 CSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDV 535

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
           +TY  ++ GL  +  L  A  L +++
Sbjct: 536 VTYNTMISGLCSKRLLQEADDLFRKM 561



 Score =  219 bits (559), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 231/459 (50%), Gaps = 7/459 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   ++ MV  G KPD    T L++ L   NKA +AV +++ +V  G  PD   Y 
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+RG+I  A+ L+ K+E    +   V +NT++  LC +  +  ++ L   +  K
Sbjct: 228 TVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETK 287

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++PNV TY+ L+          +A +LL +++ +   PN+V++N L+    KEG+  +A
Sbjct: 288 GIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L  ++  +   P  ++YN+L+   C   R +EA  +   M  +D  P++ TYN LI  
Sbjct: 348 EKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                R E   E+  EM++ G      +Y  II    + G  D       QM+  R   +
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467

Query: 379 EGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQML 436
             TY+ +   LC  GK+  A  IF+ L  K    ++ +  N +I  +C+ G    A+ + 
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYL-QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF 526

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             ++     PD  TY++++ G+C + +L EA ++FR ++E+  +P+   YN LI    + 
Sbjct: 527 CSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRD 583

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
                S E+ + M + G V +  T + LV  +  +  LD
Sbjct: 584 CDRAASAELIKEMRSSGFVGDASTIS-LVTNMLHDGRLD 621



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 4/290 (1%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +L +A    E M+ +   PD      L+   C  N+  +A ++ + +V    +
Sbjct: 336 DAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCL 395

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y  L+N  C+   +   ++L  ++ + G    TVTY T+++G    G  + +  +
Sbjct: 396 PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
             ++    +  ++ TYS LL G      +D A+ +   +     E N+  YN ++ G+CK
Sbjct: 456 FKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCK 515

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+  +A +LF  L  K   P VV+YN ++  LC +   +EA+ L  +M E+   P+  T
Sbjct: 516 AGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGT 572

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           YN LI +         + E++ EM  SGF V   S   ++  +  +G++D
Sbjct: 573 YNTLIRANLRDCDRAASAELIKEMRSSGF-VGDASTISLVTNMLHDGRLD 621



 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 149/321 (46%), Gaps = 3/321 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ K   P+V     L+    K  K  +A ++ E ++   I PD   Y 
Sbjct: 308 RWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYN 367

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +  A Q+ + +          TYNTL+ G C   ++   ++L   ++++
Sbjct: 368 LLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQR 427

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ +++G ++    D A  +   +++     ++++Y++LL GLC  G+ + A
Sbjct: 428 GLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTA 487

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           + +F+ L       ++  YN ++  +C  G+  EA  L   +    + P VVTYN +I+ 
Sbjct: 488 LVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISG 544

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L      ++A ++  +M   G    + +YN +I    ++       + + +M    +  +
Sbjct: 545 LCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGD 604

Query: 379 EGTYNAIAMLCEQGKVQEAFF 399
             T + +  +   G++ ++F 
Sbjct: 605 ASTISLVTNMLHDGRLDKSFL 625



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 48/281 (17%)

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           +L   G  P+V S+  L  S C+E  +  A+G   E+    LS  +              
Sbjct: 17  NLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDII-------------- 62

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
           + + A ++  +M +S    +   +N +++ + K  K +LV+   +QM     S +  TY 
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTY- 121

Query: 384 AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
                        + FI        NC             CR+     A  +L +M K G
Sbjct: 122 -------------SIFI--------NC------------FCRRSQLSLALAVLAKMMKLG 148

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           + PD  T SSL+ G C    + +A+ +   + E  Y PD   +  LI G   + +   ++
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +  +MV +GC P+ +TY  +V GL    ++D+A  L+ ++
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM 249


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 232/473 (49%), Gaps = 7/473 (1%)

Query: 13  NLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLA--SAQISISPKDSIFTLPNWRVGK 70
           +L  K +R   S  LY+  + +  F      S  LA     + +  + SI TL +   G 
Sbjct: 106 SLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGY 165

Query: 71  NDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI 130
              K    R++DA   ++ MV  G +PD    T L++ L   NKA +AV +++ +V  G 
Sbjct: 166 CHGK----RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
            P+   Y  +VN LC+RG+I  A  L+ K+E    +   V Y+T++  LC +   + +L 
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 281

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           L   +  KG++PNV TYS L+          +A +LL D+I R   PN+V++N L+    
Sbjct: 282 LFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFV 341

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           KEG+  +A +L+ ++  +   P + +Y+ L+   C   R +EA  +   M  +D  P+VV
Sbjct: 342 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 401

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TYN LI       R ++  E+  EM++ G      +Y  +I    +    D       QM
Sbjct: 402 TYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461

Query: 371 ICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           +     PN  TYN +   LC+ GK+++A  +F+ L   +  P       +I  +C+ G  
Sbjct: 462 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 521

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
              + +   ++  G  PD   Y++++ G CR+G+ +EA  +FR + E+  +PD
Sbjct: 522 EDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score =  216 bits (550), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 246/507 (48%), Gaps = 38/507 (7%)

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           ++L+DA      MV     P + +  +LL  + K  K    + + E +   GI  +   Y
Sbjct: 64  MKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTY 123

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             L+N  CRR  I  A+ L+ K+ + G++   VT ++L+ G C   +++ ++ L+D++ +
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG---- 253
            G +P+  T++ L+ G +      EA+ L+D ++ RG +PNLV+Y V++ GLCK G    
Sbjct: 184 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 243

Query: 254 -------------------------------RTEDAIELFRDLPAKGFSPSVVSYNILLR 282
                                            +DA+ LF ++  KG  P+V++Y+ L+ 
Sbjct: 244 AFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
            LC   RW +A+ LL++M E  ++P+VVT+N LI +    G+  +A ++ DEM +   + 
Sbjct: 304 CLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIF 401
              +Y+ +I   C   ++D      + MI +   PN  TYN  I   C+  ++ E   +F
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELF 423

Query: 402 QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE 461
           + +  +           +I    +  +   A  +  +M   G  P+  TY++L+ G+C+ 
Sbjct: 424 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483

Query: 462 GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
           G L++A+ +F  L+ +   P I  YN +I G CK  + +   ++F  +  KG  P+ I Y
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543

Query: 522 TILVEGLAFENELDIAAGLMKELYMRE 548
             ++ G   +   + A  L ++  MRE
Sbjct: 544 NTMISGFCRKGLKEEADALFRK--MRE 568



 Score =  193 bits (490), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 208/441 (47%), Gaps = 34/441 (7%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           ++L +   S K   A+ +   +V S  +P    +  L++ + +       + L EK++  
Sbjct: 55  EILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL 114

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G      TYN L+   C   +++ +L LL ++ K G +P++ T S LL G    + + +A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           + L+D ++  G  P+ +++  L+ GL    +  +A+ L   +  +G  P++V+Y +++  
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           LC  G  + A  LL +M+   +  +VV Y+ +I SL  +   + A  +  EM   G    
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQS 403
             +Y+ +I+ LC   +     + L  MI R+ +PN  T+NA+                  
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL------------------ 336

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
                           I    ++G    A ++  EM K    PD +TYSSL+ G C    
Sbjct: 337 ----------------IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 380

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           LDEA  +F ++   D  P++  YN LI GFCK +R D  +E+F+ M  +G V N +TYT 
Sbjct: 381 LDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTT 440

Query: 524 LVEGLAFENELDIAAGLMKEL 544
           L+ G     + D A  + K++
Sbjct: 441 LIHGFFQARDCDNAQMVFKQM 461



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 140/316 (44%), Gaps = 15/316 (4%)

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
           G P +   ++ L G+C  GR               FS     Y  +LR+  +  + ++A 
Sbjct: 25  GNPRIAPSSIDLCGMCYWGR--------------AFSSGSGDYREILRNGLHSMKLDDAI 70

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
           GL   M +    PS+  +N L+++++   + +    + ++M R G +    +YN +I   
Sbjct: 71  GLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCF 130

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMH 413
           C+  ++ L +  L +M+   Y P+  T +++    C   ++ +A  +   +      P  
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                +I  L        A  ++  M + G  P+  TY  +V G+C+ G +D A  +   
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 250

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +E      ++  Y+ +I   CKY+  D ++ +F  M NKG  PN ITY+ L+  L     
Sbjct: 251 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYER 310

Query: 534 LDIAAGLMKELYMREV 549
              A+ L+ ++  R++
Sbjct: 311 WSDASRLLSDMIERKI 326


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 228/454 (50%), Gaps = 1/454 (0%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+++A   ++ MV   Q+PD+   + L+  LC   +  +A+ +++ +V  G  PD   
Sbjct: 153 EGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 212

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  ++N LC+ GN   A+ L  K+EE   +   V Y+ ++  LC  G  + +L L + + 
Sbjct: 213 YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            KG+K +V TYS L+ G   +   D+  K+L ++I R   P++V+++ L+    KEG+  
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 332

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A EL+ ++  +G +P  ++YN L+   C E    EAN +   M  +   P +VTY+ILI
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
            S     R +    +  E++  G      +YN ++   C+ GK++   +   +M+ R   
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452

Query: 377 PNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+  TY  +   LC+ G++ +A  IF+ +   +          +I  +C       A+ +
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
              ++  G  PD  TY+ ++ G+C++G L EA  +FR ++E+   PD   YN LI     
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 572

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
                 S+E+ + M   G   +  T  ++++ L+
Sbjct: 573 GSGLISSVELIEEMKVCGFSADSSTIKMVIDMLS 606



 Score =  219 bits (557), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 229/452 (50%), Gaps = 1/452 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G + D+   T ++   C+  K   A  V+      G  PD   ++ LVN  C  G +  A
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + LV+++ E   +   VT +TL+ GLC  G+++++L L+DR+ + G +P+  TY  +L  
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K      A+ L   +  R  + ++V Y++++  LCK+G  +DA+ LF ++  KG    
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           VV+Y+ L+  LC +G+W++   +L EM   ++ P VVT++ LI      G+  +A E+ +
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
           EM   G      +YN +I   CKE  +    Q  D M+ +   P+  TY+  I   C+  
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           +V +   +F+ + +K   P       ++   C+ G    A ++  EM   G  P   TY 
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            L+ G+C  G L++ALEIF  ++++     I  YN +I G C   + D +  +F  + +K
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           G  P+ +TY +++ GL  +  L  A  L +++
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551



 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 238/468 (50%), Gaps = 34/468 (7%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           ++++NDA    E M+     P      +L   + ++ +    +   + +  +GI  D   
Sbjct: 48  DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
            T ++N  CR+  + +A  ++ +  + G++  T+T++TLV G C  G++++++ L+DR+ 
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           +   +P++ T S L+ G   +  V EA+ L+D ++  G +P+ V+Y  +L  LCK G + 
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            A++LFR +  +    SVV Y+I++ SLC +G +++A  L  EM+ + +   VVTY+ LI
Sbjct: 228 LALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             L   G+ +   ++L EM          +++ +I    KEGK+    +  ++MI R  +
Sbjct: 288 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           P+  TYN++                                  I   C++   + A QM 
Sbjct: 348 PDTITYNSL----------------------------------IDGFCKENCLHEANQMF 373

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             M   G  PD  TYS L+   C+   +D+ + +FR +     +P+   YN L+LGFC+ 
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            + + + E+FQ MV++G  P+ +TY IL++GL    EL+ A  + +++
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481



 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 219/435 (50%), Gaps = 1/435 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +PD    + L+   C   +  +AV +++ +V     PD    + L+N LC +G +  A
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + L++++ E+GFQ   VTY  ++  LC  G    +L L  ++ ++ +K +V  YS +++ 
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K+   D+A+ L +++  +G + ++V+Y+ L+ GLC +G+ +D  ++ R++  +   P 
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           VV+++ L+     EG+  EA  L  EM    ++P  +TYN LI          +A ++ D
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQG 392
            M   G      +Y+ +I   CK  +VD  ++   ++  +   PN  TYN + +  C+ G
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 434

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           K+  A  +FQ + ++   P       ++  LC  G    A ++  +M K   T     Y+
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            ++ GMC    +D+A  +F  L +    PD+  YN +I G CK      +  +F++M   
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554

Query: 513 GCVPNEITYTILVEG 527
           GC P++ TY IL+  
Sbjct: 555 GCTPDDFTYNILIRA 569



 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 205/436 (47%), Gaps = 34/436 (7%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   A+ + E ++ S  +P    +  L + + R       +   + +E +G +    T  
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            ++   C   KL  +  +L R  K G +P+  T+S L+ G   E  V EA+ L+D ++  
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
              P+LV+ + L+ GLC +GR  +A+ L   +   GF P  V+Y  +L  LC  G    A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             L  +M+E ++  SVV Y+I+I SL   G  + A  + +EM   G      +Y+ +I  
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           LC +GK D   + L +MI R   P+  T++A+                            
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL---------------------------- 321

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                 I +  ++G    A ++  EM   G  PD+ TY+SL+ G C+E  L EA ++F +
Sbjct: 322 ------IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +      PDI  Y+ LI  +CK +R D  + +F+ + +KG +PN ITY  LV G     +
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 534 LDIAAGLMKELYMREV 549
           L+ A  L +E+  R V
Sbjct: 436 LNAAKELFQEMVSRGV 451



 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 189/397 (47%), Gaps = 35/397 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+   +DA      M  KG K DV   + L+  LC   K     +++  ++G  II
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   ++ L++   + G +  A +L  ++   G    T+TYN+L+ G C    L+++ Q+
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
            D +  KG +P++ TYS L+    K + VD+ M+L  +I ++G  PN ++YN L+ G C+
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+   A ELF+++ ++G  PSVV+Y ILL  LC  G   +A  +  +M +  ++  +  
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YNI+I  +    + + A+ +   ++  G      +YN +I  LCK+G +        +M 
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
               +P++ TYN                I   LG             +IS          
Sbjct: 553 EDGCTPDDFTYN--------------ILIRAHLGG----------SGLIS---------- 578

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           + +++ EM  CGF+ DS T   +V  M  +  LD++ 
Sbjct: 579 SVELIEEMKVCGFSADSSTI-KMVIDMLSDRRLDKSF 614



 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 165/359 (45%), Gaps = 13/359 (3%)

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEG--AYKER--------GVDEAMKLLDDIIARG 234
           LN+      ++ +KG   ++  YS + E   +YKER         V++A+ L + +I   
Sbjct: 8   LNRKASNFTQILEKG--TSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSR 65

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
             P  + +N L + + +  + +  +   + +   G    + +  I++   C + +   A 
Sbjct: 66  PLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAF 125

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            +L    +    P  +T++ L+    L GR  +A  ++D M          + + +I  L
Sbjct: 126 SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           C +G+V   +  +D+M+   + P+E TY  +   LC+ G    A  +F+ +  +      
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                VI  LC+ G+   A  +  EM   G   D  TYSSL+ G+C +G  D+  ++ R 
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 305

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
           +   + +PD+  ++ALI  F K  +   + E++  M+ +G  P+ ITY  L++G   EN
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 126/277 (45%), Gaps = 1/277 (0%)

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           +SY   LR+   + +  +A  L   M +    P+ + +N L ++++   + +        
Sbjct: 36  LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 95

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGK 393
           M  +G      +   +I   C++ K+      L +     Y P+  T++ +    C +G+
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           V EA  +   +   +  P       +I+ LC KG    A  ++  M + GF PD  TY  
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           ++  +C+ G    AL++FR +EE +    +  Y+ +I   CK    D ++ +F  M  KG
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
              + +TY+ L+ GL  + + D  A +++E+  R ++
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score =  212 bits (539), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 234/474 (49%), Gaps = 4/474 (0%)

Query: 79  RLNDAFLHLEYMVGK-GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           R+ D  L  + M+ K    P+V   + LL+ L K      A+ +   +V  GI PD   Y
Sbjct: 171 RVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIY 230

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T ++  LC   ++  A +++  +E  G     V YN L+ GLC   K+ +++ +   L  
Sbjct: 231 TGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAG 290

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
           K LKP+V TY  L+ G  K +  +  ++++D+++     P+  + + L+ GL K G+ E+
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEE 350

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A+ L + +   G SP++  YN L+ SLC   ++ EA  L   M +  L P+ VTY+ILI 
Sbjct: 351 ALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILID 410

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
                G+ + A   L EM  +G  ++   YN +I   CK G +      + +MI ++  P
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470

Query: 378 NEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
              TY ++    C +GK+ +A  ++  +  K   P       ++S L R G    A ++ 
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            EM +    P+  TY+ ++ G C EG + +A E  + + E   +PD  +Y  LI G C  
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLT 590

Query: 497 QRTDLSIEIFQRMVNKG-CVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            +     ++F   ++KG C  NEI YT L+ G   E +L+ A  + +E+  R V
Sbjct: 591 GQAS-EAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643



 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 236/528 (44%), Gaps = 36/528 (6%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K  + ++A L  + M   G +P+    + L+   C+  K   A+  +  +V +G+ 
Sbjct: 375 DSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLK 434

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
                Y  L+N  C+ G+I  A   + ++     +   VTY +L+ G CS GK+N++L+L
Sbjct: 435 LSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +T KG+ P+++T++ LL G ++   + +A+KL +++     +PN V+YNV++ G C+
Sbjct: 495 YHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           EG    A E  +++  KG  P   SY  L+  LC  G+  EA   +  + + +   + + 
Sbjct: 555 EGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEIC 614

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y  L+      G+ E+A  V  EM + G ++    Y  +I    K     L    L +M 
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG--- 427
            R   P++  Y + I    + G  +EAF I+  + N+   P       VI+ LC+ G   
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 428 ------------------NTYPAF-----------QMLYEMTKC---GFTPDSYTYSSLV 455
                              TY  F           Q   E+      G   ++ TY+ L+
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLI 794

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
           RG CR+G ++EA E+   +  +   PD   Y  +I   C+      +IE++  M  KG  
Sbjct: 795 RGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR 854

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYD 563
           P+ + Y  L+ G     E+  A  L  E+  + ++  +   R +   D
Sbjct: 855 PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTSND 902



 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 221/485 (45%), Gaps = 41/485 (8%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           + GK  KPDV     L+Y LCK  +    + +M+ ++     P  A  + LV  L +RG 
Sbjct: 288 LAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGK 347

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           I  A+ LV++V + G       YN L+  LC   K +++  L DR+ K GL+PN  TYS 
Sbjct: 348 IEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSI 407

Query: 210 LLEGAYKERG------------VDEAMKL--------------LDDIIARGG-------- 235
           L++  +  RG            VD  +KL                DI A  G        
Sbjct: 408 LID-MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINK 466

Query: 236 --EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
             EP +V+Y  L+ G C +G+   A+ L+ ++  KG +PS+ ++  LL  L   G   +A
Sbjct: 467 KLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDA 526

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             L  EM E ++ P+ VTYN++I      G   +AFE L EMT  G      SY P+I  
Sbjct: 527 VKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHG 586

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPM 412
           LC  G+       +D +       NE  Y  +    C +GK++EA  + Q +  ++   +
Sbjct: 587 LCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEM-VQRGVDL 645

Query: 413 HDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
              C  V I    +  +    F +L EM   G  PD   Y+S++    + G   EA  I+
Sbjct: 646 DLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIW 705

Query: 472 RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
            ++     +P+   Y A+I G CK    + +  +  +M     VPN++TY   ++ L  +
Sbjct: 706 DLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILT-K 764

Query: 532 NELDI 536
            E+D+
Sbjct: 765 GEVDM 769



 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 216/530 (40%), Gaps = 80/530 (15%)

Query: 72  DQKSKEVRL--NDAFLHLEYMVGKGQKP-DVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           D   +E R+  +  F+     + +G++  ++A +++L+      ++  K V V E+++G+
Sbjct: 27  DSAQEECRIAEDKQFVDAVKRIVRGKRSWEIALSSELV------SRRLKTVHVEEILIGT 80

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
             I D        NFL                   GF   T ++  L+  L        +
Sbjct: 81  --IDDPKLGLRFFNFLGL---------------HRGFDHSTASFCILIHALVKANLFWPA 123

Query: 189 LQLLDRLTKKGLKPN--------------------------------------------- 203
             LL  L  + LKP+                                             
Sbjct: 124 SSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMI 183

Query: 204 --------VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
                   V T S LL G  K R    AM+L +D+++ G  P++  Y  ++  LC+    
Sbjct: 184 TKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDL 243

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             A E+   + A G   ++V YN+L+  LC + +  EA G+  ++  +DL P VVTY  L
Sbjct: 244 SRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTL 303

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           +  L      E   E++DEM    F+ +  + + ++  L K GK++  +  + +++    
Sbjct: 304 VYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGV 363

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
           SPN   YNA I  LC+  K  EA  +F  +G     P       +I M CR+G    A  
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALS 423

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
            L EM   G     Y Y+SL+ G C+ G +  A      +      P +  Y +L+ G+C
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
              + + ++ ++  M  KG  P+  T+T L+ GL     +  A  L  E+
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM 533


>AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22598038-22601688 FORWARD
           LENGTH=1136
          Length = 1136

 Score =  211 bits (538), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 234/503 (46%), Gaps = 48/503 (9%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ M+ +   PDVA    L+  LC      K+  +M+ +  SG  P    Y  ++++ C+
Sbjct: 221 LKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCK 280

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
           +G    A++L++ ++  G      TYN L+  LC   ++ +   LL  + K+ + PN  T
Sbjct: 281 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVT 340

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ L+ G   E  V  A +LL+++++ G  PN V++N L+ G   EG  ++A+++F  + 
Sbjct: 341 YNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMME 400

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANG------------------------------- 295
           AKG +PS VSY +LL  LC    ++ A G                               
Sbjct: 401 AKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD 460

Query: 296 ----LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
               LL EM ++ + P +VTY+ LI      GR + A E++  + R G +     Y+ +I
Sbjct: 461 EAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNC 410
              C+ G +   ++  + MI   ++ +  T+N  +  LC+ GKV EA    + + +    
Sbjct: 521 YNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL 580

Query: 411 PMHDYCKNVISMLC------RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
           P      N +S  C        G    AF +  EMTK G  P  +TY SL++G+C+ G L
Sbjct: 581 P------NTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 634

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EA +  + L       D   YN L+   CK      ++ +F  MV +  +P+  TYT L
Sbjct: 635 REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 694

Query: 525 VEGLAFENELDIAAGLMKELYMR 547
           + GL  + +  IA    KE   R
Sbjct: 695 ISGLCRKGKTVIAILFAKEAEAR 717



 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 219/488 (44%), Gaps = 6/488 (1%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D    E    +A      M  KG  P       LL  LCK+ +   A      +  +G+ 
Sbjct: 381 DGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVC 440

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
                YT +++ LC+ G +  A+ L+ ++ + G     VTY+ L+ G C  G+   + ++
Sbjct: 441 VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 500

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           + R+ + GL PN   YS L+    +   + EA+++ + +I  G   +  ++NVL+T LCK
Sbjct: 501 VCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK 560

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+  +A E  R + + G  P+ VS++ L+      G   +A  +  EM +    P+  T
Sbjct: 561 AGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFT 620

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y  L+  L   G   +A + L  +      V    YN ++  +CK G +   V    +M+
Sbjct: 621 YGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMV 680

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNT 429
            R   P+  TY + I+ LC +GK   A    +    + N  P        +  + + G  
Sbjct: 681 QRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQW 740

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
                   +M   G TPD  T ++++ G  R G +++  ++   +   +  P++  YN L
Sbjct: 741 KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNIL 800

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           + G+ K +    S  +++ ++  G +P+++T   LV G+   N L+I   ++K    R V
Sbjct: 801 LHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGV 860

Query: 550 LSRSTVDR 557
                VDR
Sbjct: 861 ----EVDR 864



 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 174/356 (48%), Gaps = 1/356 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            Y+ L++     G +  SL++   +   G  P+V+T + +L    K          L ++
Sbjct: 165 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM 224

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           + R   P++ ++N+L+  LC EG  E +  L + +   G++P++V+YN +L   C +GR+
Sbjct: 225 LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRF 284

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           + A  LL  M  + +   V TYN+LI  L    R  + + +L +M +   +    +YN +
Sbjct: 285 KAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTL 344

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQN 409
           I     EGKV +  Q L++M+    SPN  T+NA I     +G  +EA  +F  +  K  
Sbjct: 345 INGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGL 404

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P       ++  LC+      A      M + G      TY+ ++ G+C+ G LDEA+ 
Sbjct: 405 TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVV 464

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           +   + ++   PDI  Y+ALI GFCK  R   + EI  R+   G  PN I Y+ L+
Sbjct: 465 LLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520



 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 213/469 (45%), Gaps = 8/469 (1%)

Query: 98   DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
            D      LL  +CKS    KAV +   +V   I+PD+  YT L++ LCR+G    A+   
Sbjct: 652  DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 711

Query: 158  EKVEEHG-FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            ++ E  G      V Y   V G+   G+    +   +++   G  P++ T + +++G  +
Sbjct: 712  KEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSR 771

Query: 217  ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
               +++   LL ++  + G PNL +YN+LL G  K      +  L+R +   G  P  ++
Sbjct: 772  MGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLT 831

Query: 277  YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
             + L+  +C     E    +L       +     T+N+LI+    +G    AF+++  MT
Sbjct: 832  CHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMT 891

Query: 337  RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQ 395
              G ++   + + +++ L +  +       L +M  +  SP    Y   I  LC  G ++
Sbjct: 892  SLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIK 951

Query: 396  EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
             AF + + +   + CP +     ++  L + G    A  +L  M K    P   ++++L+
Sbjct: 952  TAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 1011

Query: 456  RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
               C+ G + EALE+  ++       D+ +YN LI G C      L+ E+++ M   G +
Sbjct: 1012 HLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFL 1071

Query: 516  PNEITYTILVEG-LAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYD 563
             N  TY  L+ G LA E     A     ++ ++++L+R  +  +S+  D
Sbjct: 1072 ANATTYKALIRGLLARETAFSGA-----DIILKDLLARGFITSMSLSQD 1115



 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 198/453 (43%), Gaps = 23/453 (5%)

Query: 79  RLNDAFLHL--EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           R+ D   H+  E  +  G+   V  A    Y LC SN                     + 
Sbjct: 126 RMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSN--------------------PSV 165

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L+    R G I  ++++   +  +GF     T N ++  +   G+       L  + 
Sbjct: 166 YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEML 225

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K+ + P+V T++ L+     E   +++  L+  +   G  P +V+YN +L   CK+GR +
Sbjct: 226 KRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFK 285

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            AIEL   + +KG    V +YN+L+  LC   R  +   LL +M +  + P+ VTYN LI
Sbjct: 286 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 345

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
              S  G+   A ++L+EM   G +    ++N +I     EG     ++    M  +  +
Sbjct: 346 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 405

Query: 377 PNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+E +Y  +   LC+  +   A   +  +     C        +I  LC+ G    A  +
Sbjct: 406 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 465

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           L EM+K G  PD  TYS+L+ G C+ G    A EI   +      P+   Y+ LI   C+
Sbjct: 466 LNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCR 525

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
                 +I I++ M+ +G   +  T+ +LV  L
Sbjct: 526 MGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 558



 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 193/448 (43%), Gaps = 4/448 (0%)

Query: 69  GKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           G  D   K   L++A + L  M   G  PD+   + L+   CK  + + A  ++  I   
Sbjct: 448 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 507

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+ P+   Y+ L+   CR G +  A+++ E +   G      T+N LV  LC  GK+ ++
Sbjct: 508 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 567

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
            + +  +T  G+ PN  ++  L+ G        +A  + D++   G  P   +Y  LL G
Sbjct: 568 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 627

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           LCK G   +A +  + L A   +   V YN LL ++C  G   +A  L  EM +  + P 
Sbjct: 628 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 687

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV--TATSYNPIIARLCKEGKVDLVVQC 366
             TY  LI+ L   G+T  A     E    G NV      Y   +  + K G+    +  
Sbjct: 688 SYTYTSLISGLCRKGKTVIAILFAKEAEARG-NVLPNKVMYTCFVDGMFKAGQWKAGIYF 746

Query: 367 LDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCR 425
            +QM    ++P+  T NA I      GK+++   +   +GN+   P       ++    +
Sbjct: 747 REQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSK 806

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
           + +   +F +   +   G  PD  T  SLV G+C   ML+  L+I +         D   
Sbjct: 807 RKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYT 866

Query: 486 YNALILGFCKYQRTDLSIEIFQRMVNKG 513
           +N LI   C     + + ++ + M + G
Sbjct: 867 FNMLISKCCANGEINWAFDLVKVMTSLG 894



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 130/280 (46%)

Query: 75   SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
            SK   ++ +FL    ++  G  PD      L+  +C+SN     +++++  +  G+  D 
Sbjct: 805  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 864

Query: 135  ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
              +  L++  C  G I +A  LV+ +   G      T + +V  L  + +  +S  +L  
Sbjct: 865  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHE 924

Query: 195  LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
            ++K+G+ P    Y  L+ G  +   +  A  + +++IA    P  V+ + ++  L K G+
Sbjct: 925  MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 984

Query: 255  TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
             ++A  L R +      P++ S+  L+   C  G   EA  L   M    L   +V+YN+
Sbjct: 985  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1044

Query: 315  LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            LIT L   G    AFE+ +EM   GF   AT+Y  +I  L
Sbjct: 1045 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1084



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 140/310 (45%), Gaps = 2/310 (0%)

Query: 97   PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
            P++     LL+   K      +  +   I+ +GI+PD      LV  +C    +   +++
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 157  VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            ++     G +    T+N L+   C++G++N +  L+  +T  G+  +  T   ++    +
Sbjct: 852  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 911

Query: 217  ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
                 E+  +L ++  +G  P    Y  L+ GLC+ G  + A  +  ++ A    P  V+
Sbjct: 912  NHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 971

Query: 277  YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
             + ++R+L   G+ +EA  LL  M +  L P++ ++  L+     +G   +A E+   M+
Sbjct: 972  ESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMS 1031

Query: 337  RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI--AMLCEQGKV 394
              G  +   SYN +I  LC +G + L  +  ++M    +  N  TY A+   +L  +   
Sbjct: 1032 NCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAF 1091

Query: 395  QEAFFIFQSL 404
              A  I + L
Sbjct: 1092 SGADIILKDL 1101



 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 160/405 (39%), Gaps = 56/405 (13%)

Query: 58   DSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARK 117
            D +F    W+ G                  E M   G  PD+     ++    +  K  K
Sbjct: 732  DGMFKAGQWKAG--------------IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEK 777

Query: 118  AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
               ++  +      P+   Y  L++   +R ++  +  L   +  +G     +T ++LV 
Sbjct: 778  TNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVL 837

Query: 178  GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
            G+C    L   L++L     +G++ + +T                               
Sbjct: 838  GICESNMLEIGLKILKAFICRGVEVDRYT------------------------------- 866

Query: 238  NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
                +N+L++  C  G    A +L + + + G S    + + ++  L    R++E+  +L
Sbjct: 867  ----FNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 922

Query: 298  AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             EM ++ +SP    Y  LI  L   G  + AF V +EM          + + ++  L K 
Sbjct: 923  HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKC 982

Query: 358  GKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC-EQGKVQEAF---FIFQSLGNKQNCPMH 413
            GK D     L  M+  +  P   ++  +  LC + G V EA     +  + G K +   +
Sbjct: 983  GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSY 1042

Query: 414  DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +    +I+ LC KG+   AF++  EM   GF  ++ TY +L+RG+
Sbjct: 1043 NV---LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1084



 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 373 RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
           R  + N   Y+  I +   +G +Q++  IF+ +G     P    C  ++  + + G    
Sbjct: 157 RLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVS 216

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
            +  L EM K    PD  T++ L+  +C EG  +++  + + +E++ Y P I  YN ++ 
Sbjct: 217 VWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLH 276

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            +CK  R   +IE+   M +KG   +  TY +L+  L   N +     L++++  R +
Sbjct: 277 WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMI 334


>AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23793641 FORWARD LENGTH=666
          Length = 666

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 20/467 (4%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKA---------------VRVMEMIVGSGIIPDAACYT 138
           G +PDV     LL+ LC  ++  +A               V + + +V  G+ P    + 
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFN 230

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N LC  G +  A  LV K+   G     VTY T+V G+C  G    +L LL ++ + 
Sbjct: 231 TLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET 290

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            +KP+V  YS +++   K+    +A  L  +++ +G  PN+ +YN ++ G C  GR  DA
Sbjct: 291 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             L RD+  +  +P V+++N L+ +   EG+  EA  L  EM    + P  VTYN +I  
Sbjct: 351 QRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYG 410

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
              H R + A  + D M          ++N II   C+  +VD  +Q L ++  R    N
Sbjct: 411 FCKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 466

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TYN  I   CE   +  A  +FQ + +   CP    C  ++   C       A ++  
Sbjct: 467 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 526

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
            +       D+  Y+ ++ GMC+   +DEA ++F  L  +   PD+  YN +I GFC   
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 586

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
               +  +F +M + G  P+  TY  L+ G     E+D +  L+ E+
Sbjct: 587 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633



 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 233/500 (46%), Gaps = 59/500 (11%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+DA    +YMV            +++    + N+   A+ +   +    I  +   +  
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL------- 192
           L+   C    + +++    K+ + GFQ   VT+NTL+ GLC   +++++L L        
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 193 --------DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
                   D++ + GL P V T++ L+ G   E  V EA  L++ ++ +G   ++V+Y  
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT 266

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           ++ G+CK G T+ A+ L   +      P VV Y+ ++  LC +G   +A  L +EM E+ 
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           ++P+V TYN +I      GR   A  +L +M     N    ++N +I+   KEGK+    
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 365 QCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
           +  D+M+ R   P+  TYN++                          ++ +CK+      
Sbjct: 387 KLCDEMLHRCIFPDTVTYNSM--------------------------IYGFCKH------ 414

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
              N +   + ++++     +PD  T+++++   CR   +DE +++ R +     + +  
Sbjct: 415 ---NRFDDAKHMFDLMA---SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 468

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            YN LI GFC+    + + ++FQ M++ G  P+ IT  IL+ G   ENE      L + L
Sbjct: 469 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC-ENE-----KLEEAL 522

Query: 545 YMREVLSRSTVDRLSMQYDL 564
            + EV+  S +D  ++ Y++
Sbjct: 523 ELFEVIQMSKIDLDTVAYNI 542



 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 212/460 (46%), Gaps = 41/460 (8%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+ +A   +  MVGKG   DV     ++  +CK    + A+ ++  +  + I PD   
Sbjct: 239 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 298

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ +++ LC+ G+   A  L  ++ E G      TYN ++ G CS G+ + + +LL  + 
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           ++ + P+V T++ L+  + KE  + EA KL D+++ R   P+ V+YN ++ G CK  R +
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           DA  +F DL A   SP VV++N ++   C   R +E   LL E+    L  +  TYN LI
Sbjct: 419 DAKHMF-DLMA---SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                      A ++  EM   G      + N ++   C+  K++  ++  + +   +  
Sbjct: 475 HGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKID 534

Query: 377 PNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
            +   YN I   +C+  KV EA+ +F SL      P+H                      
Sbjct: 535 LDTVAYNIIIHGMCKGSKVDEAWDLFCSL------PIH---------------------- 566

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
                  G  PD  TY+ ++ G C +  + +A  +F  +++N + PD   YN LI G  K
Sbjct: 567 -------GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 619

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
               D SIE+   M + G   +  T   +V  L  +  LD
Sbjct: 620 AGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLD 658



 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE +L +A    + M+ +   PD      ++Y  CK N+   A  + +++      PD  
Sbjct: 378 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVV 433

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  +++  CR   +   MQL+ ++   G    T TYNTL+ G C    LN +  L   +
Sbjct: 434 TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G+ P+  T + LL G  +   ++EA++L + I     + + V+YN+++ G+CK  + 
Sbjct: 494 ISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKV 553

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++A +LF  LP  G  P V +YN+++   C +    +AN L  +M +    P   TYN L
Sbjct: 554 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           I      G  +++ E++ EM  +GF+  A +   ++A L  +G++D
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLD 658



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 153/320 (47%), Gaps = 4/320 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   PDV     L+    K  K  +A ++ + ++   I PD   Y 
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYN 405

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++   C+      A  + + +         VT+NT++   C   ++++ +QLL  ++++
Sbjct: 406 SMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRR 461

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L+ G  +   ++ A  L  ++I+ G  P+ ++ N+LL G C+  + E+A
Sbjct: 462 GLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEA 521

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +ELF  +         V+YNI++  +C   + +EA  L   +    + P V TYN++I+ 
Sbjct: 522 LELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISG 581

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                    A  +  +M  +G     ++YN +I    K G++D  ++ + +M    +S +
Sbjct: 582 FCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 641

Query: 379 EGTYNAIAMLCEQGKVQEAF 398
             T   +A L   G++ ++F
Sbjct: 642 AFTIKMVADLITDGRLDKSF 661



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 152/374 (40%), Gaps = 62/374 (16%)

Query: 184 KLNQSLQLLDRLTKKGLK--PNVFTYSF------LLEGAYKERGVDEAMKLLDDIIARGG 235
           +LN    +  R+ +KG K  P++   +F      L  G++  + +D+A+   D ++    
Sbjct: 43  RLNSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKSLDDAIDFFDYMVRSRP 102

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
               V  N ++    +  R + AI L+R +  +    ++ S+NIL++  C          
Sbjct: 103 FYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC---------- 152

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
                D   LS S+ T+                     ++T+ GF     ++N ++  LC
Sbjct: 153 -----DCHKLSFSLSTFG--------------------KLTKLGFQPDVVTFNTLLHGLC 187

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
            E ++   +     M+                  E G + EA  +F  +      P+   
Sbjct: 188 LEDRISEALALFGYMV------------------ETGFL-EAVALFDQMVEIGLTPVVIT 228

Query: 416 CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
              +I+ LC +G    A  ++ +M   G   D  TY ++V GMC+ G    AL +   +E
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           E    PD+  Y+A+I   CK      +  +F  M+ KG  PN  TY  +++G        
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWS 348

Query: 536 IAAGLMKELYMREV 549
            A  L++++  RE+
Sbjct: 349 DAQRLLRDMIEREI 362


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score =  210 bits (534), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 234/473 (49%), Gaps = 5/473 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           ++++L+DA      MV     P + + ++LL  + K NK    + + E +   GI  +  
Sbjct: 52  QDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 111

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y+  +N+ CRR  +  A+ ++ K+ + G+    VT N+L+ G C   ++++++ L+D++
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G +P+  T++ L+ G ++     EA+ L++ ++ +G +P+LV+Y  ++ GLCK G  
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 231

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           + A+ L   +        VV YN ++  LC     ++A  L  +M+ + + P V TYN L
Sbjct: 232 DLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPL 291

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I+ L  +GR   A  +L +M     N     +N +I    KEGK+    +  D+M+  ++
Sbjct: 292 ISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKH 351

Query: 376 S-PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
             P+   YN  I   C+  +V+E   +F+ +  +           +I    +  +   A 
Sbjct: 352 CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 411

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            +  +M   G  PD  TY+ L+ G+C  G ++ AL +F  +++ D   DI  Y  +I   
Sbjct: 412 MVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEAL 471

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL---AFENELDIAAGLMKE 543
           CK  + +   ++F  +  KG  PN +TYT ++ G      + E D     MKE
Sbjct: 472 CKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKE 524



 Score =  199 bits (507), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 222/459 (48%), Gaps = 3/459 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L+ A   L  M+  G  P +     LL   C  N+  +AV +++ +V  G  PD   +T
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            LV+ L +      A+ LVE++   G Q   VTY  ++ GLC  G+ + +L LL+++ K 
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            ++ +V  Y+ +++G  K + +D+A  L + +  +G +P++ +YN L++ LC  GR  DA
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM-DEEDLSPSVVTYNILIT 317
             L  D+  K  +P +V +N L+ +   EG+  EA  L  EM   +   P VV YN LI 
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
               + R E+  EV  EM++ G      +Y  +I    +    D       QM+     P
Sbjct: 365 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP 424

Query: 378 NEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           +  TYN +   LC  G V+ A  +F+ +  +           +I  LC+ G     + + 
Sbjct: 425 DIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             ++  G  P+  TY++++ G CR+G+ +EA  +F  ++E+  +P+   YN LI    + 
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
                S E+ + M + G   +  T+  LV  +  +  LD
Sbjct: 545 GDEAASAELIKEMRSCGFAGDASTFG-LVTNMLHDGRLD 582



 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 218/453 (48%), Gaps = 11/453 (2%)

Query: 108 DLCKSNKARKAVRVMEM---------IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           D C+ N +RK ++ +++         +V S   P    ++ L++ + +       + L E
Sbjct: 40  DDCRENLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGE 99

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           +++  G      TY+  +   C   +L+ +L +L ++ K G  P++ T + LL G     
Sbjct: 100 QMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            + EA+ L+D ++  G +P+ V++  L+ GL +  +  +A+ L   +  KG  P +V+Y 
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            ++  LC  G  + A  LL +M++  +   VV YN +I  L  +   + AF++ ++M   
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 279

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G      +YNP+I+ LC  G+     + L  M+ +  +P+   +NA I    ++GK+ EA
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339

Query: 398 FFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
             ++  +   ++C P       +I   C+        ++  EM++ G   ++ TY++L+ 
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G  +    D A  +F+ +  +   PDI  YN L+ G C     + ++ +F+ M  +    
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           + +TYT ++E L    +++    L   L ++ V
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGV 492



 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 164/330 (49%), Gaps = 3/330 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   ++DAF     M  KG KPDV     L+  LC   +   A R++  ++   I 
Sbjct: 258 DGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNIN 317

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKV--EEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           PD   +  L++   + G +  A +L +++   +H F    V YNTL+KG C + ++ + +
Sbjct: 318 PDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD-VVAYNTLIKGFCKYKRVEEGM 376

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           ++   ++++GL  N  TY+ L+ G ++ R  D A  +   +++ G  P++++YN+LL GL
Sbjct: 377 EVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGL 436

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
           C  G  E A+ +F  +  +     +V+Y  ++ +LC  G+ E+   L   +  + + P+V
Sbjct: 437 CNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNV 496

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
           VTY  +++     G  E+A  +  EM   G    + +YN +I    ++G      + + +
Sbjct: 497 VTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKE 556

Query: 370 MICRRYSPNEGTYNAIAMLCEQGKVQEAFF 399
           M    ++ +  T+  +  +   G++ ++F 
Sbjct: 557 MRSCGFAGDASTFGLVTNMLHDGRLDKSFL 586


>AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28020777-28023068 FORWARD
           LENGTH=763
          Length = 763

 Score =  208 bits (529), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 230/457 (50%), Gaps = 2/457 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G    ++   +LL  LCK    ++  ++++ ++  G++P+   Y   +  LC+RG 
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+++V  + E G +   +TYN L+ GLC + K  ++   L ++  +GL+P+ +TY+ 
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G  K   V  A +++ D +  G  P+  +Y  L+ GLC EG T  A+ LF +   KG
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKG 386

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+V+ YN L++ L  +G   EA  L  EM E+ L P V T+NIL+  L   G    A 
Sbjct: 387 IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-L 388
            ++  M   G+     ++N +I     + K++  ++ LD M+     P+  TYN++   L
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGL 506

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C+  K ++    ++++  K   P       ++  LCR      A  +L EM      PD+
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEEN-DYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            T+ +L+ G C+ G LD A  +FR +EE          YN +I  F +     ++ ++FQ
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            MV++   P+  TY ++V+G      +++    + E+
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEM 663



 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 231/483 (47%), Gaps = 1/483 (0%)

Query: 68  VGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG 127
           VG      ++ ++ +A    E M     +P V     ++  L  S    +A +V   +  
Sbjct: 80  VGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRD 139

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
            GI PD   +T  +   C+      A++L+  +   G +   V Y T+V G        +
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAE 199

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
             +L  ++   G+   + T++ LL    K+  V E  KLLD +I RG  PNL +YN+ + 
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           GLC+ G  + A+ +   L  +G  P V++YN L+  LC   +++EA   L +M  E L P
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEP 319

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
              TYN LI      G  + A  ++ +   +GF     +Y  +I  LC EG+ +  +   
Sbjct: 320 DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALF 379

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
           ++ + +   PN   YN  I  L  QG + EA  +   +  K   P       +++ LC+ 
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKM 439

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
           G    A  ++  M   G+ PD +T++ L+ G   +  ++ ALEI  ++ +N   PD+  Y
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           N+L+ G CK  + +  +E ++ MV KGC PN  T+ IL+E L    +LD A GL++E+  
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKN 559

Query: 547 REV 549
           + V
Sbjct: 560 KSV 562



 Score =  202 bits (514), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 212/432 (49%), Gaps = 2/432 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           ++ +G KPDV     L+Y LCK++K ++A   +  +V  G+ PD+  Y  L+   C+ G 
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++V     +GF     TY +L+ GLC  G+ N++L L +    KG+KPNV  Y+ 
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++G   +  + EA +L +++  +G  P + ++N+L+ GLCK G   DA  L + + +KG
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           + P + ++NIL+     + + E A  +L  M +  + P V TYN L+  L    + E   
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           E    M   G      ++N ++  LC+  K+D  +  L++M  +  +P+  T+   I   
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           C+ G +  A+ +F+ +             N +I     K N   A ++  EM      PD
Sbjct: 577 CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPD 636

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            YTY  +V G C+ G ++   +    + EN ++P +     +I   C   R   +  I  
Sbjct: 637 GYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIH 696

Query: 508 RMVNKGCVPNEI 519
           RMV KG VP  +
Sbjct: 697 RMVQKGLVPEAV 708



 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 232/502 (46%), Gaps = 40/502 (7%)

Query: 53  SISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKS 112
            I+P    FT+      K  +    +RL      L  M  +G + +V     ++    + 
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRL------LNNMSSQGCEMNVVAYCTVVGGFYEE 194

Query: 113 NKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY 172
           N   +   +   ++ SG+    + +  L+  LC++G++    +L++KV + G      TY
Sbjct: 195 NFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTY 254

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           N  ++GLC  G+L+ +++++  L ++G KP+V TY+ L+ G  K     EA   L  ++ 
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVN 314

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            G EP+  +YN L+ G CK G  + A  +  D    GF P   +Y  L+  LC+EG    
Sbjct: 315 EGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNR 374

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
           A  L  E   + + P+V+ YN LI  LS  G   +A ++ +EM+  G      ++N ++ 
Sbjct: 375 ALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVN 434

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
            LCK G V      +  MI + Y P+  T+N +                          +
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNIL--------------------------I 468

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
           H Y   +            A ++L  M   G  PD YTY+SL+ G+C+    ++ +E ++
Sbjct: 469 HGYSTQL--------KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYK 520

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            + E    P++  +N L+   C+Y++ D ++ + + M NK   P+ +T+  L++G     
Sbjct: 521 TMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580

Query: 533 ELDIAAGLMKELYMREVLSRST 554
           +LD A  L +++     +S ST
Sbjct: 581 DLDGAYTLFRKMEEAYKVSSST 602



 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 134/309 (43%), Gaps = 40/309 (12%)

Query: 258 AIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWE------------------------- 291
           A+E+F  +  + GF  ++ +Y  ++  L Y G++E                         
Sbjct: 23  ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGA 82

Query: 292 -----------EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
                      EA  +   MD  D  P+V +YN +++ L   G  +QA +V   M   G 
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFF 399
                S+   +   CK  +    ++ L+ M  +    N   Y   +    E+    E + 
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202

Query: 400 IF-QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
           +F + L +  +  +  + K ++ +LC+KG+     ++L ++ K G  P+ +TY+  ++G+
Sbjct: 203 LFGKMLASGVSLCLSTFNK-LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGL 261

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           C+ G LD A+ +   L E    PD+  YN LI G CK  +   +     +MVN+G  P+ 
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDS 321

Query: 519 ITYTILVEG 527
            TY  L+ G
Sbjct: 322 YTYNTLIAG 330



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 44/253 (17%)

Query: 327 QAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN---EGTY 382
           +A E+ + M +  GF  T ++Y  +I +L   GK + + + L  M  R    N   EG Y
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM--RENVGNHMLEGVY 79

Query: 383 -NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI-SMLCRKGNTYPAFQMLYEMT 440
             A+     +GKVQEA  +F+ + +  +C    +  N I S+L   G    A ++   M 
Sbjct: 80  VGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR 138

Query: 441 KCGFTPDSYT-----------------------------------YSSLVRGMCREGMLD 465
             G TPD Y+                                   Y ++V G   E    
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           E  E+F  +  +     +  +N L+   CK        ++  +++ +G +PN  TY + +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258

Query: 526 EGLAFENELDIAA 538
           +GL    ELD A 
Sbjct: 259 QGLCQRGELDGAV 271


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 205/392 (52%), Gaps = 4/392 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G +PD+   T L+   C  N+  +A+ ++  +V  GI PD   YT +++ LC+ G+
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH 192

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           + YA+ L +++E +G +   V Y +LV GLC+ G+   +  LL  +TK+ +KP+V T++ 
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++   KE    +A +L +++I     PN+ +Y  L+ G C EG  ++A ++F  +  KG
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P VV+Y  L+   C   + ++A  +  EM ++ L+ + +TY  LI      G+   A 
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR---YSPNEGTYNAIA 386
           EV   M   G      +YN ++  LC  GKV   +   + M  R     +PN  TYN + 
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432

Query: 387 M-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
             LC  GK+++A  +F+ +  ++          +I  +C+ G    A  +   +   G  
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
           P+  TY++++ G+ REG+  EA  +FR ++E+
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKED 524



 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 216/462 (46%), Gaps = 39/462 (8%)

Query: 86  HLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           HL+ M   G   D+     L+   C+S++   A   +  ++  G  PD   +T L+N  C
Sbjct: 97  HLQIM---GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFC 153

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
               +  AM +V ++ E G +   V Y T++  LC +G +N +L L D++   G++P+V 
Sbjct: 154 LGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVV 213

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
            Y+ L+ G        +A  LL  +  R  +P+++++N L+    KEG+  DA EL+ ++
Sbjct: 214 MYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEM 273

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
                +P++ +Y  L+   C EG  +EA  +   M+ +   P VV Y  LI       + 
Sbjct: 274 IRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKV 333

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           + A ++  EM++ G      +Y  +I    + GK ++  +    M+ R   PN  TYN +
Sbjct: 334 DDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL 393

Query: 386 AM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
              LC  GKV++A  IF+ +  +                              EM   G 
Sbjct: 394 LHCLCYNGKVKKALMIFEDMQKR------------------------------EMD--GV 421

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
            P+ +TY+ L+ G+C  G L++AL +F  + + +    I  Y  +I G CK  +   ++ 
Sbjct: 422 APNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVN 481

Query: 505 IFQRMVNKGCVPNEITYTILVEGL---AFENELDIAAGLMKE 543
           +F  + +KG  PN +TYT ++ GL     ++E  +    MKE
Sbjct: 482 LFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523



 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 208/449 (46%), Gaps = 37/449 (8%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           ++L +   S +  +A+ +   +V S  +P    +T L+N + +       + L + ++  
Sbjct: 42  EILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIM 101

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G      T N L+   C   +   +   L ++ K G +P++ T++ L+ G      ++EA
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           M +++ ++  G +P++V Y  ++  LCK G    A+ LF  +   G  P VV Y  L+  
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           LC  GRW +A+ LL  M +  + P V+T+N LI +    G+   A E+ +EM R      
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQS 403
             +Y  +I   C EG VD   Q    M  +   P+   Y ++                  
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSL------------------ 323

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
                   ++ +CK      C+K +   A ++ YEM++ G T ++ TY++L++G  + G 
Sbjct: 324 --------INGFCK------CKKVDD--AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK---GCVPNEIT 520
            + A E+F  +      P+I  YN L+   C   +   ++ IF+ M  +   G  PN  T
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWT 427

Query: 521 YTILVEGLAFENELDIAAGLMKELYMREV 549
           Y +L+ GL +  +L+ A  + +++  RE+
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREM 456



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 174/403 (43%), Gaps = 34/403 (8%)

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
           +GN G A+     ++   +      Y  +++      + N++L L   + +    P++  
Sbjct: 15  KGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIID 74

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           ++ LL    K +  D  + L D +   G   +L + N+L+   C+  +   A      + 
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             GF P +V++  L+   C   R EEA  ++ +M E  + P VV Y  +I SL  +G   
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
            A  + D+M   G       Y  ++  LC  G+       L  M  R+  P+  T+NA+ 
Sbjct: 195 YALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL- 253

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
                                            I    ++G    A ++  EM +    P
Sbjct: 254 ---------------------------------IDAFVKEGKFLDAEELYNEMIRMSIAP 280

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           + +TY+SL+ G C EG +DEA ++F ++E     PD+  Y +LI GFCK ++ D +++IF
Sbjct: 281 NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIF 340

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
             M  KG   N ITYT L++G     + ++A  +   +  R V
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGV 383



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 38/273 (13%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +  DA      M+     P++   T L+   C      +A ++  ++   G  
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF 314

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   YT L+N  C+   +  AM++  ++ + G    T+TY TL++G    GK N + ++
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR---GGEPNLVSYNVLLTG 248
              +  +G+ PN+ TY+ LL        V +A+ + +D+  R   G  PN+ +YNVLL G
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434

Query: 249 LC-----------------------------------KEGRTEDAIELFRDLPAKGFSPS 273
           LC                                   K G+ ++A+ LF  LP+KG  P+
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPN 494

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
           VV+Y  ++  L  EG   EA+ L  +M E+ +S
Sbjct: 495 VVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527


>AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2766367-2768430 REVERSE
           LENGTH=687
          Length = 687

 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 249/488 (51%), Gaps = 9/488 (1%)

Query: 74  KSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           K KE      FL  ++M  +G KPDV   + ++ DL K+ K   A+ + + +   G+ PD
Sbjct: 161 KKKEFEKARGFL--DWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPD 218

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKV-EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
             CY  L++   +  +   AM+L +++ E+        T+N ++ GL   G+++  L++ 
Sbjct: 219 VTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIW 278

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           +R+ +   + +++TYS L+ G      VD+A  + +++  R    ++V+YN +L G C+ 
Sbjct: 279 ERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRC 338

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G+ ++++EL+R +  K  S ++VSYNIL++ L   G+ +EA  +   M  +  +    TY
Sbjct: 339 GKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTY 397

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
            I I  L ++G   +A  V+ E+  SG ++   +Y  II  LCK+ +++     + +M  
Sbjct: 398 GIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSK 457

Query: 373 RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
                N    NA I  L    ++ EA F  + +G     P       +I  LC+ G    
Sbjct: 458 HGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGE 517

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A   + EM + G+ PD  TYS L+ G+CR+  +D ALE++    ++    D+  +N LI 
Sbjct: 518 ASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIH 577

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG---LAFENELDIAAGLMKELYMR- 547
           G C   + D ++ +   M ++ C  N +TY  L+EG   +   N   +  G M ++ ++ 
Sbjct: 578 GLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQP 637

Query: 548 EVLSRSTV 555
           +++S +T+
Sbjct: 638 DIISYNTI 645



 Score =  192 bits (488), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 229/454 (50%), Gaps = 5/454 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +P +     LL    ++ +  K   +      +G+ P+   Y  L+   C++     A
Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKA 168

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
              ++ + + GF+    +Y+T++  L   GKL+ +L+L D ++++G+ P+V  Y+ L++G
Sbjct: 169 RGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDG 228

Query: 214 AYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
             KE+    AM+L D ++      PN+ ++N++++GL K GR +D ++++  +       
Sbjct: 229 FLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREK 288

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            + +Y+ L+  LC  G  ++A  +  E+DE   S  VVTYN ++      G+ +++ E+ 
Sbjct: 289 DLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELW 348

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
             M     +V   SYN +I  L + GK+D        M  + Y+ ++ TY   I  LC  
Sbjct: 349 RIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVN 407

Query: 392 GKVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           G V +A  + Q +  +  +  ++ Y  ++I  LC+K     A  ++ EM+K G   +S+ 
Sbjct: 408 GYVNKALGVMQEVESSGGHLDVYAYA-SIIDCLCKKKRLEEASNLVKEMSKHGVELNSHV 466

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
            ++L+ G+ R+  L EA    R + +N   P + +YN LI G CK  +   +    + M+
Sbjct: 467 CNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             G  P+  TY+IL+ GL  + ++D+A  L  + 
Sbjct: 527 ENGWKPDLKTYSILLCGLCRDRKIDLALELWHQF 560



 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 228/462 (49%), Gaps = 5/462 (1%)

Query: 89  YMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRG 148
           Y    G  P++     L+   CK  +  KA   ++ +   G  PD   Y+ ++N L + G
Sbjct: 139 YFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAG 198

Query: 149 NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK-KGLKPNVFTY 207
            +  A++L +++ E G       YN L+ G         +++L DRL +   + PNV T+
Sbjct: 199 KLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTH 258

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           + ++ G  K   VD+ +K+ + +     E +L +Y+ L+ GLC  G  + A  +F +L  
Sbjct: 259 NIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDE 318

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           +  S  VV+YN +L   C  G+ +E+  L   M+ ++ S ++V+YNILI  L  +G+ ++
Sbjct: 319 RKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDE 377

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA- 386
           A  +   M   G+    T+Y   I  LC  G V+  +  + ++       +   Y +I  
Sbjct: 378 ATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIID 437

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDY-CKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
            LC++ +++EA  + + + +K    ++ + C  +I  L R      A   L EM K G  
Sbjct: 438 CLCKKKRLEEASNLVKEM-SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCR 496

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
           P   +Y+ L+ G+C+ G   EA    + + EN + PD+  Y+ L+ G C+ ++ DL++E+
Sbjct: 497 PTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALEL 556

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           + + +  G   + + + IL+ GL    +LD A  +M  +  R
Sbjct: 557 WHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHR 598



 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 206/424 (48%), Gaps = 15/424 (3%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH-GFQTGTVTYNTLVKGLCSHGKLNQS 188
           + P +    H++  L    N   A  L +    H G+    V Y+ +++ L     +N  
Sbjct: 3   VFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHV 62

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR-----GGEPNLVSYN 243
            ++++ +  +  K +      +++   K    D+A+    D+  R     G EP + SYN
Sbjct: 63  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQAL----DVFKRMREIFGCEPAIRSYN 118

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
            LL    +  +      LF      G +P++ +YN+L++  C +  +E+A G L  M +E
Sbjct: 119 TLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKE 178

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
              P V +Y+ +I  L+  G+ + A E+ DEM+  G     T YN +I    KE      
Sbjct: 179 GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTA 238

Query: 364 VQCLDQMI-CRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLG-NKQNCPMHDYCKNVI 420
           ++  D+++      PN  T+N  I+ L + G+V +   I++ +  N++   ++ Y  ++I
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTY-SSLI 297

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
             LC  GN   A  +  E+ +   + D  TY++++ G CR G + E+LE++RI+E  + +
Sbjct: 298 HGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSV 357

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
            +I +YN LI G  +  + D +  I++ M  KG   ++ TY I + GL     ++ A G+
Sbjct: 358 -NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGV 416

Query: 541 MKEL 544
           M+E+
Sbjct: 417 MQEV 420



 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 193/451 (42%), Gaps = 70/451 (15%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK  R++D     E M    ++ D+   + L++ LC +    KA  V   +       D 
Sbjct: 266 SKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDV 325

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  ++   CR G I  +++L  ++ EH      V+YN L+KGL  +GK++++  +   
Sbjct: 326 VTYNTMLGGFCRCGKIKESLELW-RIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRL 384

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  KG   +  TY   + G      V++A+ ++ ++ + GG  ++ +Y  ++  LCK+ R
Sbjct: 385 MPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKR 444

Query: 255 TEDA-----------IEL------------------------FRDLPAKGFSPSVVSYNI 279
            E+A           +EL                         R++   G  P+VVSYNI
Sbjct: 445 LEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNI 504

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           L+  LC  G++ EA+  + EM E    P + TY+IL+  L    + + A E+  +  +SG
Sbjct: 505 LICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG 564

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFF 399
                  +N +I  LC  GK+D  +  +  M  R  + N  TYN +          E FF
Sbjct: 565 LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTL---------MEGFF 615

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
                                    + G++  A  +   M K G  PD  +Y+++++G+C
Sbjct: 616 -------------------------KVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALI 490
               +  A+E F     +   P +  +N L+
Sbjct: 651 MCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 112/209 (53%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           ++ RL +A   L  M   G +P V     L+  LCK+ K  +A   ++ ++ +G  PD  
Sbjct: 476 RDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLK 535

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y+ L+  LCR   I  A++L  +  + G +T  + +N L+ GLCS GKL+ ++ ++  +
Sbjct: 536 TYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANM 595

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             +    N+ TY+ L+EG +K    + A  +   +   G +P+++SYN ++ GLC     
Sbjct: 596 EHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGV 655

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSL 284
             A+E F D    G  P+V ++NIL+R++
Sbjct: 656 SYAMEFFDDARNHGIFPTVYTWNILVRAV 684



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 122/244 (50%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+ RL +A   ++ M   G + +      L+  L + ++  +A   +  +  +G  P   
Sbjct: 441 KKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVV 500

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L+  LC+ G  G A   V+++ E+G++    TY+ L+ GLC   K++ +L+L  + 
Sbjct: 501 SYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQF 560

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + GL+ +V  ++ L+ G      +D+AM ++ ++  R    NLV+YN L+ G  K G +
Sbjct: 561 LQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             A  ++  +   G  P ++SYN +++ LC       A     +     + P+V T+NIL
Sbjct: 621 NRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNIL 680

Query: 316 ITSL 319
           + ++
Sbjct: 681 VRAV 684


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 216/477 (45%), Gaps = 38/477 (7%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           LCK  K  K    +  +   G+ PD   Y  L++    +G +  A +L+  +   GF  G
Sbjct: 245 LCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPG 304

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
             TYNT++ GLC HGK  ++ ++   + + GL P+  TY  LL  A K+  V E  K+  
Sbjct: 305 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364

Query: 229 DIIARGGEPNLVS-----------------------------------YNVLLTGLCKEG 253
           D+ +R   P+LV                                    Y +L+ G C++G
Sbjct: 365 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 424

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
               A+ L  ++  +G +  VV+YN +L  LC      EA+ L  EM E  L P   T  
Sbjct: 425 MISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLT 484

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           ILI      G  + A E+  +M      +   +YN ++    K G +D   +    M+ +
Sbjct: 485 ILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 544

Query: 374 RYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
              P   +Y+ +   LC +G + EAF ++  + +K   P    C ++I   CR GN    
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND--YMPDIDNYNALI 490
              L +M   GF PD  +Y++L+ G  RE  + +A  + + +EE     +PD+  YN+++
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            GFC+  +   +  + ++M+ +G  P+  TYT ++ G   ++ L  A  +  E+  R
Sbjct: 665 HGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721



 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 194/431 (45%), Gaps = 36/431 (8%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  PD      LL + CK     +  +V   +    ++PD  C++ +++   R GN
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN 390

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+     V+E G     V Y  L++G C  G ++ ++ L + + ++G   +V TY+ 
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNT 450

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +L G  K + + EA KL +++  R   P+  +  +L+ G CK G  ++A+ELF+ +  K 
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
               VV+YN LL      G  + A  + A+M  +++ P+ ++Y+IL+ +L   G   +AF
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC 389
            V DEM       T    N +I   C+ G        L++MI   + P+  +YN +    
Sbjct: 571 RVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL---- 626

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM--TKCGFTPD 447
                                         I    R+ N   AF ++ +M   + G  PD
Sbjct: 627 ------------------------------IYGFVREENMSKAFGLVKKMEEEQGGLVPD 656

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            +TY+S++ G CR+  + EA  + R + E    PD   Y  +I GF        +  I  
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHD 716

Query: 508 RMVNKGCVPNE 518
            M+ +G  P++
Sbjct: 717 EMLQRGFSPDD 727



 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 209/446 (46%), Gaps = 36/446 (8%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+    ++ K R+A     ++   G          L+  L R G +  A  + +++   G
Sbjct: 171 LIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG 230

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV-DEA 223
                 T N +V  LC  GK+ +    L ++ +KG+ P++ TY+ L+  AY  +G+ +EA
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS-AYSSKGLMEEA 289

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
            +L++ +  +G  P + +YN ++ GLCK G+ E A E+F ++   G SP   +Y  LL  
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
            C +G   E   + ++M   D+ P +V ++ +++  +  G  ++A    + +  +G    
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQS 403
              Y  +I   C++G + + +   ++M+ +  + +  TYN I                  
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI------------------ 451

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
                   +H         LC++     A ++  EMT+    PDSYT + L+ G C+ G 
Sbjct: 452 --------LHG--------LCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           L  A+E+F+ ++E     D+  YN L+ GF K    D + EI+  MV+K  +P  I+Y+I
Sbjct: 496 LQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSI 555

Query: 524 LVEGLAFENELDIAAGLMKELYMREV 549
           LV  L  +  L  A  +  E+  + +
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNI 581



 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 207/434 (47%), Gaps = 9/434 (2%)

Query: 121 VMEMIVGSGIIPDA-ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT--VTYNTLVK 177
           ++ ++V SG + DA +C   ++    RR  +   +++V  ++      G+    ++ L++
Sbjct: 119 MIHILVRSGRLSDAQSCLLRMI----RRSGVS-RLEIVNSLDSTFSNCGSNDSVFDLLIR 173

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
                 KL ++ +    L  KG   ++   + L+    +   V+ A  +  +I   G   
Sbjct: 174 TYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGI 233

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+ + N+++  LCK+G+ E        +  KG  P +V+YN L+ +   +G  EEA  L+
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             M  +  SP V TYN +I  L  HG+ E+A EV  EM RSG +  +T+Y  ++   CK+
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
           G V    +    M  R   P+   +++ +++    G + +A   F S+      P +   
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +I   CRKG    A  +  EM + G   D  TY++++ G+C+  ML EA ++F  + E
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
               PD      LI G CK      ++E+FQ+M  K    + +TY  L++G     ++D 
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDT 533

Query: 537 AAGLMKELYMREVL 550
           A  +  ++  +E+L
Sbjct: 534 AKEIWADMVSKEIL 547



 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 212/468 (45%), Gaps = 3/468 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L +A      +  KG    +     L+  L +      A  V + I  SG+  +     
Sbjct: 180 KLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLN 239

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+ G +      + +V+E G     VTYNTL+    S G + ++ +L++ +  K
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK 299

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G  P V+TY+ ++ G  K    + A ++  +++  G  P+  +Y  LL   CK+G   + 
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET 359

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            ++F D+ ++   P +V ++ ++      G  ++A      + E  L P  V Y ILI  
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G    A  + +EM + G  +   +YN I+  LCK   +    +  ++M  R   P+
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRKGNTYPAFQML 436
             T    I   C+ G +Q A  +FQ +  K+    +  Y   ++    + G+   A ++ 
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTY-NTLLDGFGKVGDIDTAKEIW 538

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            +M      P   +YS LV  +C +G L EA  ++  +   +  P +   N++I G+C+ 
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
                     ++M+++G VP+ I+Y  L+ G   E  +  A GL+K++
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKM 646



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 192/426 (45%), Gaps = 53/426 (12%)

Query: 147 RGNIGYAMQLVEKVEEH--GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG----- 199
           R ++    + V+++  H   F+  +++ + ++  L   G+L+ +   L R+ ++      
Sbjct: 89  RNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRL 148

Query: 200 ------------LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
                          N   +  L+    + R + EA +    + ++G   ++ + N L+ 
Sbjct: 149 EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIG 208

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
            L + G  E A  +++++   G   +V + NI++ +LC +G+ E+    L+++ E+ + P
Sbjct: 209 SLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYP 268

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
            +VTYN LI++ S  G  E+AFE+++ M   GF+    +YN +I  LCK GK +   +  
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328

Query: 368 DQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            +M+    SP+  TY ++ M        EA                          C+KG
Sbjct: 329 AEMLRSGLSPDSTTYRSLLM--------EA--------------------------CKKG 354

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
           +     ++  +M      PD   +SS++    R G LD+AL  F  ++E   +PD   Y 
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            LI G+C+     +++ +   M+ +GC  + +TY  ++ GL     L  A  L  E+  R
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474

Query: 548 EVLSRS 553
            +   S
Sbjct: 475 ALFPDS 480



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 2/238 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   L +A    + M  K  + DV     LL    K      A  +   +V   I+
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL 547

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P    Y+ LVN LC +G++  A ++ +++     +   +  N+++KG C  G  +     
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE--PNLVSYNVLLTGL 249
           L+++  +G  P+  +Y+ L+ G  +E  + +A  L+  +    G   P++ +YN +L G 
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           C++ + ++A  + R +  +G +P   +Y  ++     +    EA  +  EM +   SP
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725



 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 18/236 (7%)

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-----------------RYSPNEGTY 382
           F  T+ S + +I  L + G++     CL +MI R                     N+  +
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 168

Query: 383 NA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
           +  I    +  K++EA   F  L +K      D C  +I  L R G    A+ +  E+++
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
            G   + YT + +V  +C++G +++       ++E    PDI  YN LI  +      + 
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDR 557
           + E+   M  KG  P   TY  ++ GL    + + A  +  E+    +   ST  R
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344


>AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23987202-23988740 REVERSE
           LENGTH=512
          Length = 512

 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 231/492 (46%), Gaps = 38/492 (7%)

Query: 38  SLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKP 97
           S  KGF RV+    +        F+  ++R          +R  DAF     MV     P
Sbjct: 12  STAKGFRRVVNPNLLGGGAAARAFS--DYREKLRTGFLHSIRFEDAFALFFEMVHSQPLP 69

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
            +   T+LL       +    +   + +   GI  D   +T L++  CR   + +A+ ++
Sbjct: 70  SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVL 129

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            K+ + G++   VT+ +L+ G C   ++  +  L+  + K G +PNV  Y+ L++G  K 
Sbjct: 130 GKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKN 189

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             ++ A++LL+++  +G   ++V+YN LLTGLC  GR  DA  + RD+  +  +P VV++
Sbjct: 190 GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTF 249

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L+     +G  +EA  L  EM +  + P+ VTYN +I  L +HGR   A +  D M  
Sbjct: 250 TALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMAS 309

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQE 396
            G      +YN +I+  CK   VD  ++   +M C  ++ +  TYN  I   C+ GK++ 
Sbjct: 310 KGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRV 369

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  IF  + +++                                    TPD  T+  L+ 
Sbjct: 370 ALDIFCWMVSRR-----------------------------------VTPDIITHCILLH 394

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G+C  G ++ AL  F  + E++    I  YN +I G CK  + + + E+F R+  +G  P
Sbjct: 395 GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKP 454

Query: 517 NEITYTILVEGL 528
           +  TYTI++ GL
Sbjct: 455 DARTYTIMILGL 466



 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 146/287 (50%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   LN A   L  M  KG   DV     LL  LC S +   A R++  ++   I 
Sbjct: 184 DGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 243

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   +T L++   ++GN+  A +L +++ +       VTYN+++ GLC HG+L  + + 
Sbjct: 244 PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT 303

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
            D +  KG  PNV TY+ L+ G  K R VDE MKL   +   G   ++ +YN L+ G C+
Sbjct: 304 FDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQ 363

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G+   A+++F  + ++  +P ++++ ILL  LC  G  E A     +M E +    +V 
Sbjct: 364 VGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA 423

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
           YNI+I  L    + E+A+E+   +   G    A +Y  +I  LCK G
Sbjct: 424 YNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 36/350 (10%)

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+  ++++++ L+    +   +  A+ +L  ++  G EP++V++  LL G C   R  DA
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             L   +   G+ P+VV YN L+  LC  G    A  LL EM+++ L   VVTYN L+T 
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L   GR   A  +L +M +   N    ++  +I    K+G +D   +   +MI     PN
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 379 EGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
             TYN+I                                  I+ LC  G  Y A +    
Sbjct: 281 NVTYNSI----------------------------------INGLCMHGRLYDAKKTFDL 306

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M   G  P+  TY++L+ G C+  M+DE +++F+ +    +  DI  YN LI G+C+  +
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
             ++++IF  MV++   P+ IT+ IL+ GL    E  I + L+K   MRE
Sbjct: 367 LRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGE--IESALVKFDDMRE 414



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 160/330 (48%), Gaps = 1/330 (0%)

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           ++A  L  +++     P++V +  LLT      R E  I   + +   G S  + S+ IL
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           +   C   R   A  +L +M +    PS+VT+  L+    L  R   AF ++  M +SG+
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFF 399
                 YN +I  LCK G++++ ++ L++M  +    +  TYN +   LC  G+  +A  
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           + + +  +   P       +I +  ++GN   A ++  EM +    P++ TY+S++ G+C
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
             G L +A + F ++      P++  YN LI GFCK++  D  +++FQRM  +G   +  
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIF 352

Query: 520 TYTILVEGLAFENELDIAAGLMKELYMREV 549
           TY  L+ G     +L +A  +   +  R V
Sbjct: 353 TYNTLIHGYCQVGKLRVALDIFCWMVSRRV 382



 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 6/253 (2%)

Query: 53  SISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKS 112
           SI+P    FT         D   K+  L++A    + M+     P+      ++  LC  
Sbjct: 241 SINPDVVTFT------ALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMH 294

Query: 113 NKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY 172
            +   A +  +++   G  P+   Y  L++  C+   +   M+L +++   GF     TY
Sbjct: 295 GRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTY 354

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           NTL+ G C  GKL  +L +   +  + + P++ T+  LL G      ++ A+   DD+  
Sbjct: 355 NTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRE 414

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
                 +V+YN+++ GLCK  + E A ELF  LP +G  P   +Y I++  LC  G   E
Sbjct: 415 SEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRRE 474

Query: 293 ANGLLAEMDEEDL 305
           A+ L+  M EE +
Sbjct: 475 ADELIRRMKEEGI 487


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 216/441 (48%), Gaps = 1/441 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ +A   L  M  KG  PDV   + ++   C+  +  K  +++E++   G+ P++  Y 
Sbjct: 261 RIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG 320

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++  LCR   +  A +   ++   G    TV Y TL+ G C  G +  + +    +  +
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            + P+V TY+ ++ G  +   + EA KL  ++  +G EP+ V++  L+ G CK G  +DA
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             +   +   G SP+VV+Y  L+  LC EG  + AN LL EM +  L P++ TYN ++  
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L   G  E+A +++ E   +G N    +Y  ++   CK G++D   + L +M+ +   P 
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560

Query: 379 EGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             T+N +    C  G +++   +   +  K   P      +++   C + N   A  +  
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           +M   G  PD  TY +LV+G C+   + EA  +F+ ++   +   +  Y+ LI GF K +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680

Query: 498 RTDLSIEIFQRMVNKGCVPNE 518
           +   + E+F +M  +G   ++
Sbjct: 681 KFLEAREVFDQMRREGLAADK 701



 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 203/436 (46%), Gaps = 34/436 (7%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   A+ V       G+  + A Y  +++F+C+ G I  A  L+  +E  G+    ++Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
           T+V G C  G+L++  +L++ + +KGLKPN + Y  ++    +   + EA +   ++I +
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G  P+ V Y  L+ G CK G    A + F ++ ++  +P V++Y  ++   C  G   EA
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             L  EM  + L P  VT+  LI      G  + AF V + M ++G +    +Y  +I  
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           LCKEG +D   + L +M      PN  TYN+I                            
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSI---------------------------- 497

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                 ++ LC+ GN   A +++ E    G   D+ TY++L+   C+ G +D+A EI + 
Sbjct: 498 ------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +      P I  +N L+ GFC +   +   ++   M+ KG  PN  T+  LV+     N 
Sbjct: 552 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNN 611

Query: 534 LDIAAGLMKELYMREV 549
           L  A  + K++  R V
Sbjct: 612 LKAATAIYKDMCSRGV 627



 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 210/432 (48%), Gaps = 1/432 (0%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           +VA    +++ +C+  + ++A  ++ ++   G  PD   Y+ +VN  CR G +    +L+
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           E ++  G +  +  Y +++  LC   KL ++ +    + ++G+ P+   Y+ L++G  K 
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             +  A K   ++ +R   P++++Y  +++G C+ G   +A +LF ++  KG  P  V++
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L+   C  G  ++A  +   M +   SP+VVTY  LI  L   G  + A E+L EM +
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQE 396
            G      +YN I+  LCK G ++  V+ + +      + +  TY  +    C+ G++ +
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  I + +  K   P       +++  C  G      ++L  M   G  P++ T++SLV+
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
             C    L  A  I++ +      PD   Y  L+ G CK +    +  +FQ M  KG   
Sbjct: 605 QYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664

Query: 517 NEITYTILVEGL 528
           +  TY++L++G 
Sbjct: 665 SVSTYSVLIKGF 676



 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 205/460 (44%), Gaps = 40/460 (8%)

Query: 116 RKAVRVMEMIVGSGIIPDA-ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
           R+A RV E ++  G++    +C  +L            A+ +  +  E G      +YN 
Sbjct: 192 REARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNI 251

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           ++  +C  G++ ++  LL  +  KG  P+V +YS ++ G  +   +D+  KL++ +  +G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
            +PN   Y  ++  LC+  +  +A E F ++  +G  P  V Y  L+   C  G    A+
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
               EM   D++P V+TY  +I+     G   +A ++  EM   G    + ++  +I   
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           CK G +    +  + MI    SPN  TY  +                             
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL----------------------------- 462

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
                I  LC++G+   A ++L+EM K G  P+ +TY+S+V G+C+ G ++EA+++    
Sbjct: 463 -----IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           E      D   Y  L+  +CK    D + EI + M+ KG  P  +T+ +L+ G      L
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577

Query: 535 DIAAGLMKELYMREVLSRSTV-DRLSMQY----DLKEFTA 569
           +    L+  +  + +   +T  + L  QY    +LK  TA
Sbjct: 578 EDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 149/296 (50%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K   + DAF    +M+  G  P+V   T L+  LCK      A  ++  +   G+ P+  
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  +VN LC+ GNI  A++LV + E  G    TVTY TL+   C  G+++++ ++L  +
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             KGL+P + T++ L+ G      +++  KLL+ ++A+G  PN  ++N L+   C     
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 612

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           + A  +++D+ ++G  P   +Y  L++  C     +EA  L  EM  +  S SV TY++L
Sbjct: 613 KAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL 672

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           I       +  +A EV D+M R G       ++       K  + D +V  +D++I
Sbjct: 673 IKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII 728



 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 132/264 (50%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE  L+ A   L  M   G +P++     ++  LCKS    +AV+++     +G+ 
Sbjct: 464 DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D   YT L++  C+ G +  A ++++++   G Q   VT+N L+ G C HG L    +L
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L+ +  KG+ PN  T++ L++       +  A  +  D+ +RG  P+  +Y  L+ G CK
Sbjct: 584 LNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 643

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               ++A  LF+++  KGFS SV +Y++L++      ++ EA  +  +M  E L+     
Sbjct: 644 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703

Query: 312 YNILITSLSLHGRTEQAFEVLDEM 335
           ++    +     R +   + +DE+
Sbjct: 704 FDFFSDTKYKGKRPDTIVDPIDEI 727


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 216/441 (48%), Gaps = 1/441 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ +A   L  M  KG  PDV   + ++   C+  +  K  +++E++   G+ P++  Y 
Sbjct: 261 RIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG 320

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++  LCR   +  A +   ++   G    TV Y TL+ G C  G +  + +    +  +
Sbjct: 321 SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            + P+V TY+ ++ G  +   + EA KL  ++  +G EP+ V++  L+ G CK G  +DA
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             +   +   G SP+VV+Y  L+  LC EG  + AN LL EM +  L P++ TYN ++  
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L   G  E+A +++ E   +G N    +Y  ++   CK G++D   + L +M+ +   P 
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560

Query: 379 EGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             T+N +    C  G +++   +   +  K   P      +++   C + N   A  +  
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYK 620

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           +M   G  PD  TY +LV+G C+   + EA  +F+ ++   +   +  Y+ LI GF K +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680

Query: 498 RTDLSIEIFQRMVNKGCVPNE 518
           +   + E+F +M  +G   ++
Sbjct: 681 KFLEAREVFDQMRREGLAADK 701



 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 203/436 (46%), Gaps = 34/436 (7%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   A+ V       G+  + A Y  +++F+C+ G I  A  L+  +E  G+    ++Y+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
           T+V G C  G+L++  +L++ + +KGLKPN + Y  ++    +   + EA +   ++I +
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G  P+ V Y  L+ G CK G    A + F ++ ++  +P V++Y  ++   C  G   EA
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             L  EM  + L P  VT+  LI      G  + AF V + M ++G +    +Y  +I  
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           LCKEG +D   + L +M      PN  TYN+I                            
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSI---------------------------- 497

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                 ++ LC+ GN   A +++ E    G   D+ TY++L+   C+ G +D+A EI + 
Sbjct: 498 ------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           +      P I  +N L+ GFC +   +   ++   M+ KG  PN  T+  LV+     N 
Sbjct: 552 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNN 611

Query: 534 LDIAAGLMKELYMREV 549
           L  A  + K++  R V
Sbjct: 612 LKAATAIYKDMCSRGV 627



 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 210/432 (48%), Gaps = 1/432 (0%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           +VA    +++ +C+  + ++A  ++ ++   G  PD   Y+ +VN  CR G +    +L+
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           E ++  G +  +  Y +++  LC   KL ++ +    + ++G+ P+   Y+ L++G  K 
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             +  A K   ++ +R   P++++Y  +++G C+ G   +A +LF ++  KG  P  V++
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L+   C  G  ++A  +   M +   SP+VVTY  LI  L   G  + A E+L EM +
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQE 396
            G      +YN I+  LCK G ++  V+ + +      + +  TY  +    C+ G++ +
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  I + +  K   P       +++  C  G      ++L  M   G  P++ T++SLV+
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
             C    L  A  I++ +      PD   Y  L+ G CK +    +  +FQ M  KG   
Sbjct: 605 QYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664

Query: 517 NEITYTILVEGL 528
           +  TY++L++G 
Sbjct: 665 SVSTYSVLIKGF 676



 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 205/460 (44%), Gaps = 40/460 (8%)

Query: 116 RKAVRVMEMIVGSGIIPDA-ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
           R+A RV E ++  G++    +C  +L            A+ +  +  E G      +YN 
Sbjct: 192 REARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNI 251

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           ++  +C  G++ ++  LL  +  KG  P+V +YS ++ G  +   +D+  KL++ +  +G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
            +PN   Y  ++  LC+  +  +A E F ++  +G  P  V Y  L+   C  G    A+
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
               EM   D++P V+TY  +I+     G   +A ++  EM   G    + ++  +I   
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           CK G +    +  + MI    SPN  TY  +                             
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL----------------------------- 462

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
                I  LC++G+   A ++L+EM K G  P+ +TY+S+V G+C+ G ++EA+++    
Sbjct: 463 -----IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           E      D   Y  L+  +CK    D + EI + M+ KG  P  +T+ +L+ G      L
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577

Query: 535 DIAAGLMKELYMREVLSRSTV-DRLSMQY----DLKEFTA 569
           +    L+  +  + +   +T  + L  QY    +LK  TA
Sbjct: 578 EDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 149/296 (50%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K   + DAF    +M+  G  P+V   T L+  LCK      A  ++  +   G+ P+  
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  +VN LC+ GNI  A++LV + E  G    TVTY TL+   C  G+++++ ++L  +
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             KGL+P + T++ L+ G      +++  KLL+ ++A+G  PN  ++N L+   C     
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 612

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           + A  +++D+ ++G  P   +Y  L++  C     +EA  L  EM  +  S SV TY++L
Sbjct: 613 KAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL 672

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           I       +  +A EV D+M R G       ++       K  + D +V  +D++I
Sbjct: 673 IKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII 728



 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 132/264 (50%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE  L+ A   L  M   G +P++     ++  LCKS    +AV+++     +G+ 
Sbjct: 464 DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D   YT L++  C+ G +  A ++++++   G Q   VT+N L+ G C HG L    +L
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L+ +  KG+ PN  T++ L++       +  A  +  D+ +RG  P+  +Y  L+ G CK
Sbjct: 584 LNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 643

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               ++A  LF+++  KGFS SV +Y++L++      ++ EA  +  +M  E L+     
Sbjct: 644 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703

Query: 312 YNILITSLSLHGRTEQAFEVLDEM 335
           ++    +     R +   + +DE+
Sbjct: 704 FDFFSDTKYKGKRPDTIVDPIDEI 727


>AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19603828-19606287 FORWARD
           LENGTH=819
          Length = 819

 Score =  202 bits (514), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 231/479 (48%), Gaps = 12/479 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  RL DA    + M  +G   D      L+  +C   K     +++E   G G IP+  
Sbjct: 182 KSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIV 241

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  ++   C+ G+I  A  + ++++  GF     T+ T++ G C  G    S +LL  +
Sbjct: 242 FYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEV 301

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            ++GL+ +V+  + +++  Y+     +  + +  IIA   +P++ +YN+L+  LCKEG+ 
Sbjct: 302 KERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKK 361

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           E A+    +   KG  P+ +SY  L+++ C    ++ A+ LL +M E    P +VTY IL
Sbjct: 362 EVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGIL 421

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I  L + G  + A  +  ++   G +  A  YN +++ LCK G+         +M+ R  
Sbjct: 422 IHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNI 481

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQ---SLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
            P+   Y   I      G   EA  +F      G K +   H+    +I   CR G    
Sbjct: 482 LPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHN---AMIKGFCRSGMLDE 538

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A   +  M +    PD +TYS+++ G  ++  +  A++IFR +E+N   P++  Y +LI 
Sbjct: 539 ALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLIN 598

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           GFC      ++ E F+ M  +  VPN +TYT L+  LA E     ++ L K +Y  E++
Sbjct: 599 GFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKE-----SSTLEKAVYYWELM 652



 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 216/477 (45%), Gaps = 6/477 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK V + D  + L   V     PDV     LL  L KS +   A +V + +   G   D 
Sbjct: 151 SKAVEIYDYVVELYDSV-----PDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDN 205

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
                LV  +C  G +    +L+E     G     V YNT++ G C  G +  +  +   
Sbjct: 206 YSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKE 265

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           L  KG  P + T+  ++ G  KE     + +LL ++  RG   ++   N ++    + G 
Sbjct: 266 LKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGY 325

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
             D  E    + A    P V +YNIL+  LC EG+ E A G L E  ++ L P+ ++Y  
Sbjct: 326 KVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAP 385

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI +       + A ++L +M   G      +Y  +I  L   G +D  V    ++I R 
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445

Query: 375 YSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
            SP+   YN + + LC+ G+   A  +F  + ++   P       +I    R G+   A 
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR 505

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           ++     + G   D   ++++++G CR GMLDEAL     + E   +PD   Y+ +I G+
Sbjct: 506 KVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGY 565

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
            K Q    +I+IF+ M    C PN +TYT L+ G   + +  +A    KE+ +R+++
Sbjct: 566 VKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLV 622



 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/528 (23%), Positives = 222/528 (42%), Gaps = 86/528 (16%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           +E   GKG  P++     ++   CK      A  V + +   G +P    +  ++N  C+
Sbjct: 228 IEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCK 287

Query: 147 RGNIGYAMQLVEKVEE-------------------HGFQTG----------------TVT 171
            G+   + +L+ +V+E                   HG++                    T
Sbjct: 288 EGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVAT 347

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YN L+  LC  GK   ++  LD  +KKGL PN  +Y+ L++   K +  D A KLL  + 
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMA 407

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
            RG +P++V+Y +L+ GL   G  +DA+ +   L  +G SP    YN+L+  LC  GR+ 
Sbjct: 408 ERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFL 467

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  L +EM + ++ P    Y  LI      G  ++A +V       G  V    +N +I
Sbjct: 468 PAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMI 527

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNC 410
              C+ G +D  + C+++M      P++ TY+ I     +Q  +  A  IF+ +   +  
Sbjct: 528 KGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCK 587

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG-MLDEALE 469
           P      ++I+  C +G+   A +   EM      P+  TY++L+R + +E   L++A+ 
Sbjct: 588 PNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVY 647

Query: 470 IFRILEENDYMPDIDNYNALILGFCK--------------YQRTDLSIEIFQRM------ 509
            + ++  N  +P+   +N L+ GF K              + ++ L  E F RM      
Sbjct: 648 YWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWS 707

Query: 510 -----------------------------VNKGCVPNEITYTILVEGL 528
                                        V KG  P+ +++  ++ G 
Sbjct: 708 DHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHGF 755



 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 15/322 (4%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
            ++DA      ++ +G  PD A    L+  LCK+ +   A  +   ++   I+PDA  Y 
Sbjct: 430 HMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYA 489

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++   R G+   A ++     E G +   V +N ++KG C  G L+++L  ++R+ ++
Sbjct: 490 TLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE 549

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            L P+ FTYS +++G  K++ +  A+K+   +     +PN+V+Y  L+ G C +G  + A
Sbjct: 550 HLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMA 609

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGR-WEEANGLLAEMDEEDLSPSVVTYNILIT 317
            E F+++  +   P+VV+Y  L+RSL  E    E+A      M      P+ VT+N L+ 
Sbjct: 610 EETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQ 669

Query: 318 SL--------------SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
                           S HG++    E    M   G++  A +YN  +  LC  G V   
Sbjct: 670 GFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTA 729

Query: 364 VQCLDQMICRRYSPNEGTYNAI 385
               D+M+ + +SP+  ++ AI
Sbjct: 730 CMFQDKMVKKGFSPDPVSFAAI 751



 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 182/422 (43%), Gaps = 16/422 (3%)

Query: 89  YMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRG 148
           +++    KPDVA    L+  LCK  K   AV  ++     G+IP+   Y  L+   C+  
Sbjct: 335 WIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSK 394

Query: 149 NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS 208
               A +L+ ++ E G +   VTY  L+ GL   G ++ ++ +  +L  +G+ P+   Y+
Sbjct: 395 EYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYN 454

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
            L+ G  K      A  L  +++ R   P+   Y  L+ G  + G  ++A ++F     K
Sbjct: 455 MLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEK 514

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G    VV +N +++  C  G  +EA   +  M+EE L P   TY+ +I           A
Sbjct: 515 GVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATA 574

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI--A 386
            ++   M ++       +Y  +I   C +G   +  +   +M  R   PN  TY  +  +
Sbjct: 575 IKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRS 634

Query: 387 MLCEQGKVQEAFFIFQSLGNKQ--------NCPMHDYCKNVISML------CRKGNTYPA 432
           +  E   +++A + ++ +   +        NC +  + K     +         G +   
Sbjct: 635 LAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLF 694

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
            +  + M   G++  +  Y+S +  +C  GM+  A      + +  + PD  ++ A++ G
Sbjct: 695 SEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHG 754

Query: 493 FC 494
           FC
Sbjct: 755 FC 756



 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 36/293 (12%)

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           D  P V+  N L++ L    R   A +V DEM   G +V   S   ++  +C EGKV++ 
Sbjct: 165 DSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVG 224

Query: 364 VQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            + ++    +   PN   YN I    C+ G ++ A+ +F+ L  K   P  +    +I+ 
Sbjct: 225 RKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMING 284

Query: 423 LCRKGNTYPAFQMLYEMTKCGF-----------------------------------TPD 447
            C++G+   + ++L E+ + G                                     PD
Sbjct: 285 FCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPD 344

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             TY+ L+  +C+EG  + A+       +   +P+  +Y  LI  +CK +  D++ ++  
Sbjct: 345 VATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLL 404

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSM 560
           +M  +GC P+ +TY IL+ GL     +D A  +  +L  R V   + +  + M
Sbjct: 405 QMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLM 457



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 116/252 (46%), Gaps = 15/252 (5%)

Query: 91  VGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNI 150
           V KG K DV     ++   C+S    +A+  M  +    ++PD   Y+ +++   ++ ++
Sbjct: 512 VEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDM 571

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
             A+++   +E++  +   VTY +L+ G C  G    + +    +  + L PNV TY+ L
Sbjct: 572 ATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTL 631

Query: 211 LEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE--------------GRT 255
           +    KE   +++A+   + ++     PN V++N LL G  K+              G++
Sbjct: 632 IRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQS 691

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
               E F  + + G+S    +YN  L  LC  G  + A     +M ++  SP  V++  +
Sbjct: 692 SLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAI 751

Query: 316 ITSLSLHGRTEQ 327
           +    + G ++Q
Sbjct: 752 LHGFCVVGNSKQ 763


>AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23301576-23303162 FORWARD LENGTH=528
          Length = 528

 Score =  202 bits (513), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 256/524 (48%), Gaps = 50/524 (9%)

Query: 33  NLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVG 92
           N  TF L+  F R     + + S K S       R G +D     + L+DA      M  
Sbjct: 22  NAATFPLSFSFCR-----RRAFSGKTSYDYREVLRTGLSD-----IELDDAIGLFGVMAQ 71

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
               P + + ++LL  + K NK    +   E +   GI  +   Y  L+N  CR   +  
Sbjct: 72  SRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSL 131

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+ L+ K+ + G++   VT N+L+ G C   +++ ++ L+D++ + G KP+  T++ L+ 
Sbjct: 132 ALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIH 191

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G +      EA+ L+D ++ RG +P+LV+Y  ++ GLCK G T+ A+ L   + A     
Sbjct: 192 GLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEA 251

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +VV Y+ ++ SLC     ++A  L  EM+ + + P+V+TY+ LI+ L  +GR   A  +L
Sbjct: 252 NVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLL 311

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            +M     N    +++ +I    K+GK+    +  ++MI R   PN  TY+++       
Sbjct: 312 SDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSL------- 364

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
                              ++ +C     ML R G    A QML  M +    P+  TY+
Sbjct: 365 -------------------INGFC-----MLDRLGE---AKQMLELMIRKDCLPNVVTYN 397

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           +L+ G C+   +D+ +E+FR + +   + +   Y  LI GF + +  D +  +F++MV+ 
Sbjct: 398 TLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 457

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVD 556
           G  PN +TY IL++GL    +      L K + + E L RST++
Sbjct: 458 GVHPNILTYNILLDGLCKNGK------LAKAMVVFEYLQRSTME 495



 Score =  196 bits (497), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 197/368 (53%), Gaps = 1/368 (0%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G  PD      L+N  C    I  A+ LV+++ E G++  TVT+ TL+ GL  H K +++
Sbjct: 143 GYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEA 202

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           + L+DR+ ++G +P++ TY  ++ G  K    D A+ LL+ + A   E N+V Y+ ++  
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           LCK    +DA+ LF ++  KG  P+V++Y+ L+  LC  GRW +A+ LL++M E  ++P+
Sbjct: 263 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPN 322

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           +VT++ LI +    G+  +A ++ +EM +   +    +Y+ +I   C   ++    Q L+
Sbjct: 323 LVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE 382

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            MI +   PN  TYN  I   C+  +V +   +F+ +  +           +I    +  
Sbjct: 383 LMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
           +   A  +  +M   G  P+  TY+ L+ G+C+ G L +A+ +F  L+ +   PDI  YN
Sbjct: 443 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 502

Query: 488 ALILGFCK 495
            +I G CK
Sbjct: 503 IMIEGMCK 510



 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 183/385 (47%), Gaps = 36/385 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   ++ MV  G KPD    T L++ L   NKA +AV +++ +V  G  PD   Y 
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +VN LC+RG+   A+ L+ K+E    +   V Y+T++  LC +   + +L L   +  K
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++PNV TYS L+          +A +LL D+I R   PNLV+++ L+    K+G+   A
Sbjct: 283 GVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKA 342

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +L+ ++  +   P++ +Y+ L+   C   R  EA  +L  M  +D  P+VVTYN LI  
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLING 402

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                R ++  E+  EM++ G      +Y  +I    +    D       QM+     PN
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462

Query: 379 EGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TYN +   LC+ GK+ +A  +F+ L   Q   M                         
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYL---QRSTME------------------------ 495

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREG 462
                   PD YTY+ ++ GMC+ G
Sbjct: 496 --------PDIYTYNIMIEGMCKAG 512



 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 114/213 (53%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L  M+ +   P++   + L+    K  K  KA ++ E ++   I P+   Y+
Sbjct: 303 RWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYS 362

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N  C    +G A Q++E +         VTYNTL+ G C   ++++ ++L   ++++
Sbjct: 363 SLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL  N  TY+ L+ G ++ R  D A  +   +++ G  PN+++YN+LL GLCK G+   A
Sbjct: 423 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 482

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
           + +F  L      P + +YNI++  +C  G+W+
Sbjct: 483 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWK 515



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 128/244 (52%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           +DA      M  KG +P+V   + L+  LC   +   A R++  ++   I P+   ++ L
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++   ++G +  A +L E++ +        TY++L+ G C   +L ++ Q+L+ + +K  
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            PNV TY+ L+ G  K + VD+ M+L  ++  RG   N V+Y  L+ G  +    ++A  
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +F+ + + G  P++++YNILL  LC  G+  +A  +   +    + P + TYNI+I  + 
Sbjct: 450 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 509

Query: 321 LHGR 324
             G+
Sbjct: 510 KAGK 513


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 213/428 (49%), Gaps = 4/428 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+     P +   +++L  + KS      + +   +   GI  D   Y  ++N LCR   
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 119

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A+ +V K+ + G++   VT ++L+ G C   ++  ++ L+ ++ + G +P+V  Y+ 
Sbjct: 120 FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 179

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +++G+ K   V++A++L D +   G   + V+YN L+ GLC  GR  DA  L RD+  + 
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+V+++  ++     EG++ EA  L  EM    + P V TYN LI  L +HGR ++A 
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-L 388
           ++LD M   G      +YN +I   CK  +VD   +   +M  R    +  TYN I    
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            + G+   A  IF  + ++ N   +     ++  LC       A  +   M K     D 
Sbjct: 360 FQAGRPDAAQEIFSRMDSRPNIRTYSI---LLYGLCMNWRVEKALVLFENMQKSEIELDI 416

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
            TY+ ++ GMC+ G +++A ++FR L      PD+ +Y  +I GFC+ ++ D S  ++++
Sbjct: 417 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476

Query: 509 MVNKGCVP 516
           M   G +P
Sbjct: 477 MQEDGLLP 484



 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 209/421 (49%), Gaps = 4/421 (0%)

Query: 125 IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK 184
           ++ S  +P    ++ +++ + +  N    + L   +E  G      +YN ++  LC   +
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 119

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
              +L ++ ++ K G +P+V T S L+ G  +   V +A+ L+  +   G  P++V YN 
Sbjct: 120 FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 179

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           ++ G CK G   DA+ELF  +   G     V+YN L+  LC  GRW +A  L+ +M   D
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           + P+V+T+  +I      G+  +A ++ +EMTR   +    +YN +I  LC  G+VD   
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299

Query: 365 QCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML 423
           Q LD M+ +   P+  TYN  I   C+  +V E   +F+ +  +           +I   
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
            + G    A ++   M      P+  TYS L+ G+C    +++AL +F  +++++   DI
Sbjct: 360 FQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDI 416

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
             YN +I G CK    + + ++F+ +  KG  P+ ++YT ++ G   + + D +  L ++
Sbjct: 417 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476

Query: 544 L 544
           +
Sbjct: 477 M 477



 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 178/359 (49%), Gaps = 39/359 (10%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G +PDV   + L+   C+ N+   A+ ++  +   G  PD   Y  +++  C+ G 
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGL 189

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC----------------------------- 180
           +  A++L +++E  G +   VTYN+LV GLC                             
Sbjct: 190 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249

Query: 181 ------SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
                   GK +++++L + +T++ + P+VFTY+ L+ G      VDEA ++LD ++ +G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
             P++V+YN L+ G CK  R ++  +LFR++  +G     ++YN +++     GR + A 
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            + + MD     P++ TY+IL+  L ++ R E+A  + + M +S   +  T+YN +I  +
Sbjct: 370 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGM 426

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
           CK G V+        + C+   P+  +Y   I+  C + +  ++  +++ +      P+
Sbjct: 427 CKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLPL 485



 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 178/370 (48%), Gaps = 4/370 (1%)

Query: 181 SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
           S   L + + L  ++ +    P++  +S +L    K +  D  + L   +   G   +L 
Sbjct: 46  SSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLY 105

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           SYN+++  LC+  R   A+ +   +   G+ P VV+ + L+   C   R  +A  L+++M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           +E    P VV YN +I      G    A E+ D M R G    A +YN ++A LC  G+ 
Sbjct: 166 EEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRW 225

Query: 361 DLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
               + +  M+ R   PN  T+ A I +  ++GK  EA  +++ +  +   P      ++
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           I+ LC  G    A QML  M   G  PD  TY++L+ G C+   +DE  ++FR + +   
Sbjct: 286 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAG 539
           + D   YN +I G+ +  R D + EIF RM ++   PN  TY+IL+ GL     ++ A  
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALV 402

Query: 540 LMKELYMREV 549
           L + +   E+
Sbjct: 403 LFENMQKSEI 412



 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 3/232 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE + ++A    E M  +   PDV     L+  LC   +  +A ++++++V  G +PD  
Sbjct: 256 KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVV 315

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L+N  C+   +    +L  ++ + G    T+TYNT+++G    G+ + + ++  R+
Sbjct: 316 TYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM 375

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
                +PN+ TYS LL G      V++A+ L +++     E ++ +YN+++ G+CK G  
Sbjct: 376 DS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           EDA +LFR L  KG  P VVSY  ++   C + +W++++ L  +M E+ L P
Sbjct: 433 EDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 413 HD-YCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           HD Y  N VI+ LCR      A  ++ +M K G+ PD  T SSL+ G C+   + +A+++
Sbjct: 102 HDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
              +EE  + PD+  YN +I G CK    + ++E+F RM   G   + +TY  LV GL  
Sbjct: 162 VSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCC 221

Query: 531 ENELDIAAGLMKELYMREVL 550
                 AA LM+++ MR+++
Sbjct: 222 SGRWSDAARLMRDMVMRDIV 241


>AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 228/458 (49%), Gaps = 1/458 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           +V KG  PDV   T  +   CK  K  +AV++   +  +G+ P+   +  +++ L   G 
Sbjct: 251 VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR 310

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A    EK+ E G +   +TY+ LVKGL    ++  +  +L  +TKKG  PNV  Y+ 
Sbjct: 311 YDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNN 370

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++   +   +++A+++ D ++++G      +YN L+ G CK G+ ++A  L +++ + G
Sbjct: 371 LIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIG 430

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F+ +  S+  ++  LC    ++ A   + EM   ++SP       LI+ L  HG+  +A 
Sbjct: 431 FNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAL 490

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           E+  +    GF V   + N ++  LC+ GK+D   +   +++ R    +  +YN  I+  
Sbjct: 491 ELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 550

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C + K+ EAF     +  +   P +     +I  L        A Q   +  + G  PD 
Sbjct: 551 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 610

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           YTYS ++ G C+    +E  E F  +   +  P+   YN LI  +C+  R  +++E+ + 
Sbjct: 611 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 670

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           M +KG  PN  TYT L++G++  + ++ A  L +E+ M
Sbjct: 671 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM 708



 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 187/401 (46%), Gaps = 37/401 (9%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +   P     T L+  LCK  K  KA+ +    +  G + D      L++ LC  G 
Sbjct: 461 MLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK 520

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++ +++   G     V+YNTL+ G C   KL+++   LD + K+GLKP+ +TYS 
Sbjct: 521 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 580

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G +    V+EA++  DD    G  P++ +Y+V++ G CK  RTE+  E F ++ +K 
Sbjct: 581 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 640

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ V YN L+R+ C  GR   A  L  +M  + +SP+  TY  LI  +S+  R E+A 
Sbjct: 641 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 700

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC 389
            + +EM   G       Y  +I    K G++  V   L +M  +   PN+ TY  +    
Sbjct: 701 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM---- 756

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
                                         I    R GN   A ++L EM + G  PDS 
Sbjct: 757 ------------------------------IGGYARDGNVTEASRLLNEMREKGIVPDSI 786

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           TY   + G  ++G     LE F+  +E +Y   I+ +N LI
Sbjct: 787 TYKEFIYGYLKQG---GVLEAFKGSDEENYAAIIEGWNKLI 824



 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 231/473 (48%), Gaps = 7/473 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R ++AF+  E MV +G +P +   + L+  L ++ +   A  V++ +   G  P+   Y 
Sbjct: 310 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 369

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           +L++     G++  A+++ + +   G    + TYNTL+KG C +G+ + + +LL  +   
Sbjct: 370 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSI 429

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G   N  +++ ++         D A++ + +++ R   P       L++GLCK G+   A
Sbjct: 430 GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 489

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +EL+     KGF     + N LL  LC  G+ +EA  +  E+         V+YN LI+ 
Sbjct: 490 LELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISG 549

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS-- 376
                + ++AF  LDEM + G      +Y+ +I  L    KV+  +Q  D   C+R    
Sbjct: 550 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDD--CKRNGML 607

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+  TY+  I   C+  + +E    F  + +K   P      ++I   CR G    A ++
Sbjct: 608 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 667

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             +M   G +P+S TY+SL++GM     ++EA  +F  +      P++ +Y ALI G+ K
Sbjct: 668 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGK 727

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
             +      + + M +K   PN+ITYT+++ G A +  +  A+ L+ E  MRE
Sbjct: 728 LGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE--MRE 778



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 209/461 (45%), Gaps = 13/461 (2%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A+ V  ++   G+ P       L+  L R        +  + V + G       + T + 
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 268

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
             C  GK+ ++++L  ++ + G+ PNV T++ +++G       DEA    + ++ RG EP
Sbjct: 269 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 328

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
            L++Y++L+ GL +  R  DA  + +++  KGF P+V+ YN L+ S    G   +A  + 
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 388

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             M  + LS +  TYN LI     +G+ + A  +L EM   GFNV   S+  +I  LC  
Sbjct: 389 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSH 448

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
              D  ++ + +M+ R  SP  G     I+ LC+ GK  +A  ++    NK         
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 508

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             ++  LC  G    AF++  E+   G   D  +Y++L+ G C +  LDEA      + +
Sbjct: 509 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 568

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
               PD   Y+ LI G     + + +I+ +      G +P+  TY+++++G       + 
Sbjct: 569 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 628

Query: 537 AAGLMKELYMREVLSRSTV-----------DRLSMQYDLKE 566
                 E+  + V   + V            RLSM  +L+E
Sbjct: 629 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 669



 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 1/417 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN A    + MV KG     +    L+   CK+ +A  A R+++ ++  G   +   +T 
Sbjct: 381 LNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 440

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++  LC       A++ V ++       G     TL+ GLC HGK +++L+L  +   KG
Sbjct: 441 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 500

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
              +  T + LL G  +   +DEA ++  +I+ RG   + VSYN L++G C + + ++A 
Sbjct: 501 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 560

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
               ++  +G  P   +Y+IL+  L    + EEA     +     + P V TY+++I   
Sbjct: 561 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 620

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
               RTE+  E  DEM           YN +I   C+ G++ + ++  + M  +  SPN 
Sbjct: 621 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNS 680

Query: 380 GTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TY + I  +    +V+EA  +F+ +  +   P   +   +I    + G       +L E
Sbjct: 681 ATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLRE 740

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           M      P+  TY+ ++ G  R+G + EA  +   + E   +PD   Y   I G+ K
Sbjct: 741 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLK 797



 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 133/256 (51%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L++AF+ L+ MV +G KPD    + L+  L   NK  +A++  +    +G++PD   Y+
Sbjct: 555 KLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYS 614

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++  C+        +  +++     Q  TV YN L++  C  G+L+ +L+L + +  K
Sbjct: 615 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 674

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ PN  TY+ L++G      V+EA  L +++   G EPN+  Y  L+ G  K G+    
Sbjct: 675 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 734

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             L R++ +K   P+ ++Y +++     +G   EA+ LL EM E+ + P  +TY   I  
Sbjct: 735 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 794

Query: 319 LSLHGRTEQAFEVLDE 334
               G   +AF+  DE
Sbjct: 795 YLKQGGVLEAFKGSDE 810



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 132/282 (46%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L++AF   + ++G+G   D      L+   C   K  +A   ++ +V  G+ PD   Y+
Sbjct: 520 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 579

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+  L     +  A+Q  +  + +G      TY+ ++ G C   +  +  +  D +  K
Sbjct: 580 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK 639

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            ++PN   Y+ L+    +   +  A++L +D+  +G  PN  +Y  L+ G+    R E+A
Sbjct: 640 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 699

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             LF ++  +G  P+V  Y  L+      G+  +   LL EM  +++ P+ +TY ++I  
Sbjct: 700 KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGG 759

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
            +  G   +A  +L+EM   G    + +Y   I    K+G V
Sbjct: 760 YARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 801


>AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 228/458 (49%), Gaps = 1/458 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           +V KG  PDV   T  +   CK  K  +AV++   +  +G+ P+   +  +++ L   G 
Sbjct: 251 VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR 310

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A    EK+ E G +   +TY+ LVKGL    ++  +  +L  +TKKG  PNV  Y+ 
Sbjct: 311 YDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNN 370

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++   +   +++A+++ D ++++G      +YN L+ G CK G+ ++A  L +++ + G
Sbjct: 371 LIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIG 430

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F+ +  S+  ++  LC    ++ A   + EM   ++SP       LI+ L  HG+  +A 
Sbjct: 431 FNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAL 490

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           E+  +    GF V   + N ++  LC+ GK+D   +   +++ R    +  +YN  I+  
Sbjct: 491 ELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 550

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C + K+ EAF     +  +   P +     +I  L        A Q   +  + G  PD 
Sbjct: 551 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 610

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           YTYS ++ G C+    +E  E F  +   +  P+   YN LI  +C+  R  +++E+ + 
Sbjct: 611 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 670

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           M +KG  PN  TYT L++G++  + ++ A  L +E+ M
Sbjct: 671 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM 708



 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 187/401 (46%), Gaps = 37/401 (9%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +   P     T L+  LCK  K  KA+ +    +  G + D      L++ LC  G 
Sbjct: 461 MLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK 520

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++ +++   G     V+YNTL+ G C   KL+++   LD + K+GLKP+ +TYS 
Sbjct: 521 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 580

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G +    V+EA++  DD    G  P++ +Y+V++ G CK  RTE+  E F ++ +K 
Sbjct: 581 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 640

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ V YN L+R+ C  GR   A  L  +M  + +SP+  TY  LI  +S+  R E+A 
Sbjct: 641 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 700

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC 389
            + +EM   G       Y  +I    K G++  V   L +M  +   PN+ TY  +    
Sbjct: 701 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM---- 756

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
                                         I    R GN   A ++L EM + G  PDS 
Sbjct: 757 ------------------------------IGGYARDGNVTEASRLLNEMREKGIVPDSI 786

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           TY   + G  ++G     LE F+  +E +Y   I+ +N LI
Sbjct: 787 TYKEFIYGYLKQG---GVLEAFKGSDEENYAAIIEGWNKLI 824



 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 231/473 (48%), Gaps = 7/473 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R ++AF+  E MV +G +P +   + L+  L ++ +   A  V++ +   G  P+   Y 
Sbjct: 310 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 369

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           +L++     G++  A+++ + +   G    + TYNTL+KG C +G+ + + +LL  +   
Sbjct: 370 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSI 429

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G   N  +++ ++         D A++ + +++ R   P       L++GLCK G+   A
Sbjct: 430 GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 489

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +EL+     KGF     + N LL  LC  G+ +EA  +  E+         V+YN LI+ 
Sbjct: 490 LELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISG 549

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS-- 376
                + ++AF  LDEM + G      +Y+ +I  L    KV+  +Q  D   C+R    
Sbjct: 550 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDD--CKRNGML 607

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+  TY+  I   C+  + +E    F  + +K   P      ++I   CR G    A ++
Sbjct: 608 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 667

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             +M   G +P+S TY+SL++GM     ++EA  +F  +      P++ +Y ALI G+ K
Sbjct: 668 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGK 727

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
             +      + + M +K   PN+ITYT+++ G A +  +  A+ L+ E  MRE
Sbjct: 728 LGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE--MRE 778



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 209/461 (45%), Gaps = 13/461 (2%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A+ V  ++   G+ P       L+  L R        +  + V + G       + T + 
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 268

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
             C  GK+ ++++L  ++ + G+ PNV T++ +++G       DEA    + ++ RG EP
Sbjct: 269 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 328

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
            L++Y++L+ GL +  R  DA  + +++  KGF P+V+ YN L+ S    G   +A  + 
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 388

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             M  + LS +  TYN LI     +G+ + A  +L EM   GFNV   S+  +I  LC  
Sbjct: 389 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSH 448

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
              D  ++ + +M+ R  SP  G     I+ LC+ GK  +A  ++    NK         
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 508

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             ++  LC  G    AF++  E+   G   D  +Y++L+ G C +  LDEA      + +
Sbjct: 509 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 568

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
               PD   Y+ LI G     + + +I+ +      G +P+  TY+++++G       + 
Sbjct: 569 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 628

Query: 537 AAGLMKELYMREVLSRSTV-----------DRLSMQYDLKE 566
                 E+  + V   + V            RLSM  +L+E
Sbjct: 629 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 669



 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 1/417 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN A    + MV KG     +    L+   CK+ +A  A R+++ ++  G   +   +T 
Sbjct: 381 LNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 440

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++  LC       A++ V ++       G     TL+ GLC HGK +++L+L  +   KG
Sbjct: 441 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 500

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
              +  T + LL G  +   +DEA ++  +I+ RG   + VSYN L++G C + + ++A 
Sbjct: 501 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 560

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
               ++  +G  P   +Y+IL+  L    + EEA     +     + P V TY+++I   
Sbjct: 561 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 620

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
               RTE+  E  DEM           YN +I   C+ G++ + ++  + M  +  SPN 
Sbjct: 621 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNS 680

Query: 380 GTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TY + I  +    +V+EA  +F+ +  +   P   +   +I    + G       +L E
Sbjct: 681 ATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLRE 740

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           M      P+  TY+ ++ G  R+G + EA  +   + E   +PD   Y   I G+ K
Sbjct: 741 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLK 797



 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 133/256 (51%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L++AF+ L+ MV +G KPD    + L+  L   NK  +A++  +    +G++PD   Y+
Sbjct: 555 KLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYS 614

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++  C+        +  +++     Q  TV YN L++  C  G+L+ +L+L + +  K
Sbjct: 615 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 674

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ PN  TY+ L++G      V+EA  L +++   G EPN+  Y  L+ G  K G+    
Sbjct: 675 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 734

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             L R++ +K   P+ ++Y +++     +G   EA+ LL EM E+ + P  +TY   I  
Sbjct: 735 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 794

Query: 319 LSLHGRTEQAFEVLDE 334
               G   +AF+  DE
Sbjct: 795 YLKQGGVLEAFKGSDE 810



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 132/282 (46%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L++AF   + ++G+G   D      L+   C   K  +A   ++ +V  G+ PD   Y+
Sbjct: 520 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 579

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+  L     +  A+Q  +  + +G      TY+ ++ G C   +  +  +  D +  K
Sbjct: 580 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK 639

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            ++PN   Y+ L+    +   +  A++L +D+  +G  PN  +Y  L+ G+    R E+A
Sbjct: 640 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 699

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             LF ++  +G  P+V  Y  L+      G+  +   LL EM  +++ P+ +TY ++I  
Sbjct: 700 KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGG 759

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
            +  G   +A  +L+EM   G    + +Y   I    K+G V
Sbjct: 760 YARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 801


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 219/448 (48%), Gaps = 13/448 (2%)

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           ++L+D+     +MV     P +A  ++LL  + K  K    + + E +   GI  +    
Sbjct: 60  MKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTC 119

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             L+N  CR   +  A+  + K+ + G +   VT+ +L+ G C   ++  +L + D++  
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
            G KPNV  Y+ +++G  K + VD A+ LL+ +   G  P++V+YN L++GLC  GR  D
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A  +   +  +   P V ++N L+ +   EGR  EA     EM    L P +VTY++LI 
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
            L ++ R ++A E+   M   G      +Y+ +I   CK  KV+  ++   +M  R    
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 378 NEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM------LCRKGNTY 430
           N  TY   I   C  GK+  A  IF+ +     C +H    N+I+       LC  G   
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRM---VFCGVH---PNIITYNVLLHGLCDNGKIE 413

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A  +L +M K G   D  TY+ ++RGMC+ G + +A +I+  L     MPDI  Y  ++
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMM 473

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           LG  K      +  +F++M   G +PNE
Sbjct: 474 LGLYKKGLRREADALFRKMKEDGILPNE 501



 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 205/417 (49%), Gaps = 4/417 (0%)

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
           +P  A ++ L++ + +       + L E+++  G      T N L+   C   +L+ +L 
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
            L ++ K G +P++ T+  LL G  +   V +A+ + D ++  G +PN+V YN ++ GLC
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K  + ++A++L   +   G  P VV+YN L+  LC  GRW +A  +++ M + ++ P V 
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVF 257

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T+N LI +    GR  +A E  +EM R   +    +Y+ +I  LC   ++D   +    M
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317

Query: 371 ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           + +   P+  TY+  I   C+  KV+    +F  +  +           +I   CR G  
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A ++   M  CG  P+  TY+ L+ G+C  G +++AL I   +++N    DI  YN +
Sbjct: 378 NVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNII 437

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL---AFENELDIAAGLMKE 543
           I G CK      + +I+  +  +G +P+  TYT ++ GL       E D     MKE
Sbjct: 438 IRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKE 494



 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 147/285 (51%), Gaps = 2/285 (0%)

Query: 74  KSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           KSK+V  ++A   L  M   G  PDV     L+  LC S +   A R++  +    I PD
Sbjct: 198 KSKQV--DNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
              +  L++   + G +  A +  E++         VTY+ L+ GLC + +L+++ ++  
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            +  KG  P+V TYS L+ G  K + V+  MKL  ++  RG   N V+Y +L+ G C+ G
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAG 375

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           +   A E+FR +   G  P++++YN+LL  LC  G+ E+A  +LA+M +  +   +VTYN
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYN 435

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
           I+I  +   G    A+++   +   G      +Y  ++  L K+G
Sbjct: 436 IIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 163/362 (45%), Gaps = 36/362 (9%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           KL+ SL L   + +    P++  +S LL    K +  D  + L + +   G   NL + N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +LL   C+  +   A+     +   G  PS+V++  LL   C   R  +A  +  +M   
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
              P+VV YN +I  L    + + A ++L+ M + G      +YN +I+ LC  G+    
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 364 VQCLDQMICRRYSPNEGTYNAIAMLC-EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            + +  M  R   P+  T+NA+   C ++G+V EA   ++                    
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYE-------------------- 280

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
                          EM +    PD  TYS L+ G+C    LDEA E+F  +      PD
Sbjct: 281 ---------------EMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           +  Y+ LI G+CK ++ +  +++F  M  +G V N +TYTIL++G     +L++A  + +
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR 385

Query: 543 EL 544
            +
Sbjct: 386 RM 387



 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 129/237 (54%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE R+++A    E M+ +   PD+   + L+Y LC  ++  +A  +   +V  G  
Sbjct: 264 DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF 323

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   Y+ L+N  C+   + + M+L  ++ + G    TVTY  L++G C  GKLN + ++
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
             R+   G+ PN+ TY+ LL G      +++A+ +L D+   G + ++V+YN+++ G+CK
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
            G   DA +++  L  +G  P + +Y  ++  L  +G   EA+ L  +M E+ + P+
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 35/349 (10%)

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y  +L    +   +D+++ L   ++     P++  ++ LL+ + K  + +  I L+  + 
Sbjct: 49  YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             G   ++ + NILL   C   +   A   L +M +    PS+VT+  L+       R  
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
            A  + D+M   G+      YN II  LCK  +VD  +  L++M      P+  TYN++ 
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL- 227

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
                                            IS LC  G    A +M+  MTK    P
Sbjct: 228 ---------------------------------ISGLCSSGRWSDATRMVSCMTKREIYP 254

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D +T+++L+    +EG + EA E +  +      PDI  Y+ LI G C Y R D + E+F
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
             MV+KGC P+ +TY+IL+ G     +++    L  E+  R V+ R+TV
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV-RNTV 362


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 216/416 (51%), Gaps = 1/416 (0%)

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K   A+ +   +V S   P    +  L++ + +       + L +K+E  G +    T+N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            ++   C   +++ +L +L ++ K G +P+  T   L+ G  +   V +A+ L+D ++  
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G +P++V+YN ++  LCK  R  DA + F+++  KG  P+VV+Y  L+  LC   RW +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL++M ++ ++P+V+TY+ L+ +   +G+  +A E+ +EM R   +    +Y+ +I  
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
           LC   ++D   Q  D M+ +    +  +YN  I   C+  +V++   +F+ +  +     
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                 +I    + G+   A +   +M   G +PD +TY+ L+ G+C  G L++AL IF 
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +++ +   DI  Y  +I G CK  + + +  +F  +  KG  P+ +TYT ++ GL
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480



 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 224/470 (47%), Gaps = 9/470 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           ++++LNDA      MV     P +    +LL  + K  K    + + + +   GI  D  
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  ++N  C    +  A+ ++ K+ + G++   VT  +LV G C   +++ ++ L+D++
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G KP++  Y+ +++   K + V++A     +I  +G  PN+V+Y  L+ GLC   R 
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
            DA  L  D+  K  +P+V++Y+ LL +    G+  EA  L  EM    + P +VTY+ L
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I  L LH R ++A ++ D M   G      SYN +I   CK  +V+  ++   +M  R  
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
             N  TYN  I    + G V +A   F  +      P       ++  LC  G    A  
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +  +M K     D  TY++++RGMC+ G ++EA  +F  L      PDI  Y  ++ G C
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
                     ++ +M  +G + N+ T +        + ++ ++A L+K++
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTLS--------DGDITLSAELIKKM 523



 Score =  188 bits (477), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 241/521 (46%), Gaps = 65/521 (12%)

Query: 16  AKTR----RTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWR--VG 69
           +KTR    + N +  L+S ++  R F     F+R+L SA + +   D + +L      +G
Sbjct: 57  SKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLL-SAIVKLKKYDVVISLGKKMEVLG 115

Query: 70  -KNDQKSKEVRLND---------AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAV 119
            +ND  +  + +N          A   L  M+  G +PD      L+   C+ N+   AV
Sbjct: 116 IRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV 175

Query: 120 RVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL 179
            +++ +V  G  PD   Y  +++ LC+   +  A    +++E  G +   VTY  LV GL
Sbjct: 176 SLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235

Query: 180 CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           C+  + + + +LL  + KK + PNV TYS LL+   K   V EA +L ++++    +P++
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
           V+Y+ L+ GLC   R ++A ++F  + +KG    VVSYN L+   C   R E+   L  E
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE 355

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M +  L  + VTYN LI      G  ++A E   +M   G +    +YN ++  LC  G+
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415

Query: 360 VDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN 418
           ++  +   + M  R    +  TY   I  +C+ GKV+EA+ +F SL  K           
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK----------- 464

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
                                   G  PD  TY++++ G+C +G+L E   ++  +++  
Sbjct: 465 ------------------------GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500

Query: 479 YMPDIDNYNALILGFCKYQRTD--LSIEIFQRMVNKGCVPN 517
            M +           C     D  LS E+ ++M++ G  P+
Sbjct: 501 LMKND----------CTLSDGDITLSAELIKKMLSCGYAPS 531



 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 194/390 (49%), Gaps = 19/390 (4%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   ++ MV  G KPD+     ++  LCK+ +   A    + I   GI P+   YT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            LVN LC       A +L+  + +       +TY+ L+     +GK+ ++ +L + + + 
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            + P++ TYS L+ G      +DEA ++ D ++++G   ++VSYN L+ G CK  R ED 
Sbjct: 290 SIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDG 349

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           ++LFR++  +G   + V+YN L++     G  ++A    ++MD   +SP + TYNIL+  
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L  +G  E+A  + ++M +   ++   +Y  +I  +CK GKV+        +  +   P+
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGN----KQNCPMHDYCKNVISMLCRKGNTYPAF 433
             TY   ++ LC +G + E   ++  +      K +C + D            G+   + 
Sbjct: 470 IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSD------------GDITLSA 517

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
           +++ +M  CG+ P       +  G+C++ +
Sbjct: 518 ELIKKMLSCGYAPS--LLKDIKSGVCKKAL 545



 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 168/367 (45%), Gaps = 1/367 (0%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           KLN ++ L   + K    P++  ++ LL    K +  D  + L   +   G   +L ++N
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +++   C   +   A+ +   +   G+ P  V+   L+   C   R  +A  L+ +M E 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
              P +V YN +I SL    R   AF+   E+ R G      +Y  ++  LC   +    
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 364 VQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            + L  MI ++ +PN  TY+A+     + GKV EA  +F+ +      P      ++I+ 
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           LC       A QM   M   G   D  +Y++L+ G C+   +++ +++FR + +   + +
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
              YN LI GF +    D + E F +M   G  P+  TY IL+ GL    EL+ A  + +
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 543 ELYMREV 549
           ++  RE+
Sbjct: 425 DMQKREM 431



 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 1/305 (0%)

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           ++ +  DAI+LF D+      PS+V +N LL ++    +++    L  +M+   +   + 
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T+NI+I       +   A  +L +M + G+     +   ++   C+  +V   V  +D+M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 371 ICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           +   Y P+   YNAI   LC+  +V +AF  F+ +  K   P       +++ LC     
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A ++L +M K   TP+  TYS+L+    + G + EA E+F  +      PDI  Y++L
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           I G C + R D + ++F  MV+KGC+ + ++Y  L+ G      ++    L +E+  R +
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 550 LSRST 554
           +S + 
Sbjct: 362 VSNTV 366


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 229/472 (48%), Gaps = 38/472 (8%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK+ RL+D    L  M   G  P+      L+Y  CK    ++A +++E++  + ++PD 
Sbjct: 251 SKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDL 310

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  L+N LC  G++   ++L++ ++    Q   VTYNTL+ G    G   ++ +L+++
Sbjct: 311 CTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQ 370

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII-ARGGEPNLVSYNVLLTGLCKEG 253
           +   G+K N  T++  L+   KE   +   + + +++   G  P++V+Y+ L+    K G
Sbjct: 371 MENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVG 430

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
               A+E+ R++  KG   + ++ N +L +LC E + +EA+ LL    +       VTY 
Sbjct: 431 DLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYG 490

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            LI       + E+A E+ DEM +     T +++N +I  LC  GK +L ++  D++   
Sbjct: 491 TLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAES 550

Query: 374 RYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
              P++ T+N+I +  C++G+V++AF  +                               
Sbjct: 551 GLLPDDSTFNSIILGYCKEGRVEKAFEFYN------------------------------ 580

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
                E  K  F PD+YT + L+ G+C+EGM ++AL  F  L E   + D   YN +I  
Sbjct: 581 -----ESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISA 634

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           FCK ++   + ++   M  KG  P+  TY   +  L  + +L     L+K+ 
Sbjct: 635 FCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKF 686



 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 206/448 (45%), Gaps = 43/448 (9%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT----------------- 174
           P  A +   ++     G    A+Q+ +K+     +   +T NT                 
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 175 ---------------------LVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFTYSFLLE 212
                                LV G C  GKL  +L +L+R+  +  + P+  TY+ +L+
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              K+  + +  +LL D+   G  PN V+YN L+ G CK G  ++A ++   +      P
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLP 308

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            + +YNIL+  LC  G   E   L+  M    L P VVTYN LI      G + +A +++
Sbjct: 309 DLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLM 368

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI-CRRYSPNEGTYNA-IAMLCE 390
           ++M   G      ++N  +  LCKE K + V + + +++    +SP+  TY+  I    +
Sbjct: 369 EQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLK 428

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
            G +  A  + + +G K    M+    N ++  LC++     A  +L    K GF  D  
Sbjct: 429 VGDLSGALEMMREMGQK-GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEV 487

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY +L+ G  RE  +++ALE++  +++    P +  +N+LI G C + +T+L++E F  +
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDEL 547

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIA 537
              G +P++ T+  ++ G   E  ++ A
Sbjct: 548 AESGLLPDDSTFNSIILGYCKEGRVEKA 575



 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 191/382 (50%), Gaps = 14/382 (3%)

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK---ERGVDEAMKLLDDIIARGGEPNL 239
           GK + +LQ+  ++ +  LKPN+ T + LL G  +      +  A ++ DD++  G   N+
Sbjct: 145 GKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNV 204

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
            ++NVL+ G C EG+ EDA+ +   + ++   +P  V+YN +L+++  +GR  +   LL 
Sbjct: 205 QTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLL 264

Query: 299 EMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
           +M +  L P+ VTYN L+      G  ++AF++++ M ++       +YN +I  LC  G
Sbjct: 265 DMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAG 324

Query: 359 KVDLVVQCLDQMICRRYSPNEGTYNAIAMLC-EQGKVQEAFFIFQSLGN---KQNCPMHD 414
            +   ++ +D M   +  P+  TYN +   C E G   EA  + + + N   K N   H+
Sbjct: 325 SMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHN 384

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKC-GFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                +  LC++       + + E+    GF+PD  TY +L++   + G L  ALE+ R 
Sbjct: 385 IS---LKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           + +     +    N ++   CK ++ D +  +      +G + +E+TY  L+ G   E +
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501

Query: 534 LDIAAGLMKELYMREVLSRSTV 555
           ++ A  +  E  M++V    TV
Sbjct: 502 VEKALEMWDE--MKKVKITPTV 521



 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 24/304 (7%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+ A   +  M  KG K +      +L  LCK  K  +A  ++      G I D   Y  
Sbjct: 432 LSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGT 491

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+    R   +  A+++ +++++        T+N+L+ GLC HGK   +++  D L + G
Sbjct: 492 LIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESG 551

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L P+  T++ ++ G  KE  V++A +  ++ I    +P+  + N+LL GLCKEG TE A+
Sbjct: 552 LLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
             F  L  +      V+YN ++ + C + + +EA  LL+EM+E+ L P   TYN  I+ L
Sbjct: 612 NFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLL 670

Query: 320 SLHGRTEQAFEVLDEM-----------------------TRSGFNVTATSYNPIIARLCK 356
              G+  +  E+L +                        ++   N  A +Y+ +I  LC 
Sbjct: 671 MEDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCS 730

Query: 357 EGKV 360
            G++
Sbjct: 731 RGRL 734



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 138/278 (49%), Gaps = 5/278 (1%)

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT---EQA 328
           PS   ++I L +  +EG+   A  +  +M    L P+++T N L+  L  +  +     A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGTYNAI-A 386
            EV D+M + G ++   ++N ++   C EGK++  +  L++M+   + +P+  TYN I  
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
            + ++G++ +   +   +      P      N++   C+ G+   AFQ++  M +    P
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLP 308

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D  TY+ L+ G+C  G + E LE+   ++     PD+  YN LI G  +   +  + ++ 
Sbjct: 309 DLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLM 368

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           ++M N G   N++T+ I ++ L  E + +     +KEL
Sbjct: 369 EQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKEL 406


>AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:6814521-6816404 FORWARD
           LENGTH=627
          Length = 627

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 220/449 (48%), Gaps = 11/449 (2%)

Query: 103 TQLLYDL-----CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           + +L+DL     C+     +A+    ++   G  P      H++  L R   I  A    
Sbjct: 154 STILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFY 213

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
             +     ++   T+N ++  LC  GKL ++   L  +   G+KP + TY+ L++G +  
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQG-FSL 272

Query: 218 RGVDEAMKLL-DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           RG  E  +L+  ++ ++G +P++ +YN +L+ +C EGR   A E+ R++   G  P  VS
Sbjct: 273 RGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVS 329

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YNIL+R     G  E A     EM ++ + P+  TYN LI  L +  + E A  ++ E+ 
Sbjct: 330 YNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIR 389

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
             G  + + +YN +I   C+ G         D+M+     P + TY + I +LC + K +
Sbjct: 390 EKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTR 449

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           EA  +F+ +  K   P       ++   C  GN   AF +L EM      PD  TY+ L+
Sbjct: 450 EADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
           RG+C EG  +EA E+   ++     PD  +YN LI G+ K   T  +  +   M++ G  
Sbjct: 510 RGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFN 569

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKEL 544
           P  +TY  L++GL+   E ++A  L++E+
Sbjct: 570 PTLLTYNALLKGLSKNQEGELAEELLREM 598



 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 162/339 (47%), Gaps = 32/339 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI------------- 125
           R+  A L +  M  KG +PD+     +L  +C   +A + +R M+ I             
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILI 334

Query: 126 -------------------VGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQ 166
                              V  G++P    Y  L++ L     I  A  L+ ++ E G  
Sbjct: 335 RGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIV 394

Query: 167 TGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKL 226
             +VTYN L+ G C HG   ++  L D +   G++P  FTY+ L+    ++    EA +L
Sbjct: 395 LDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADEL 454

Query: 227 LDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
            + ++ +G +P+LV  N L+ G C  G  + A  L +++     +P  V+YN L+R LC 
Sbjct: 455 FEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCG 514

Query: 287 EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
           EG++EEA  L+ EM    + P  ++YN LI+  S  G T+ AF V DEM   GFN T  +
Sbjct: 515 EGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLT 574

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           YN ++  L K  + +L  + L +M      PN+ ++ ++
Sbjct: 575 YNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSV 613



 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 192/415 (46%), Gaps = 37/415 (8%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE +L  A   L  M   G KP +     L+       +   A  ++  +   G  PD  
Sbjct: 237 KEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQ 296

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  +++++C   N G A +++ +++E G    +V+YN L++G  ++G L  +    D +
Sbjct: 297 TYNPILSWMC---NEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEM 353

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            K+G+ P  +TY+ L+ G + E  ++ A  L+ +I  +G   + V+YN+L+ G C+ G  
Sbjct: 354 VKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDA 413

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           + A  L  ++   G  P+  +Y  L+  LC + +  EA+ L  ++  + + P +V  N L
Sbjct: 414 KKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTL 473

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           +      G  ++AF +L EM     N    +YN ++  LC EGK +   + + +M  R  
Sbjct: 474 MDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGI 533

Query: 376 SPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
            P+  +YN +                                  IS   +KG+T  AF +
Sbjct: 534 KPDHISYNTL----------------------------------ISGYSKKGDTKHAFMV 559

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
             EM   GF P   TY++L++G+ +    + A E+ R ++    +P+  ++ ++I
Sbjct: 560 RDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVI 614



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 178/391 (45%), Gaps = 39/391 (9%)

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           DRL  K    +   +  L+    + R VDEA++    +  +G  P   + N +LT L + 
Sbjct: 148 DRLETK----STILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRL 203

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
            R E+A   + D+       +V ++NI++  LC EG+ ++A G L  M+   + P++VTY
Sbjct: 204 NRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTY 263

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL----- 367
           N L+   SL GR E A  ++ EM   GF     +YNPI++ +C EG+   V++ +     
Sbjct: 264 NTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGL 323

Query: 368 ---------------------------DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFF 399
                                      D+M+ +   P   TYN  I  L  + K++ A  
Sbjct: 324 VPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEI 383

Query: 400 IFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
           + + +  K    +     N+ I+  C+ G+   AF +  EM   G  P  +TY+SL+  +
Sbjct: 384 LIREIREK-GIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           CR+    EA E+F  +      PD+   N L+ G C     D +  + + M      P++
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 519 ITYTILVEGLAFENELDIAAGLMKELYMREV 549
           +TY  L+ GL  E + + A  LM E+  R +
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMKRRGI 533



 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           KG   D      L+   C+   A+KA  + + ++  GI P    YT L+  LCR+     
Sbjct: 391 KGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTRE 450

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A +L EKV   G +   V  NTL+ G C+ G ++++  LL  +    + P+  TY+ L+ 
Sbjct: 451 ADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMR 510

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G   E   +EA +L+ ++  RG +P+ +SYN L++G  K+G T+ A  +  ++ + GF+P
Sbjct: 511 GLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNP 570

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           ++++YN LL+ L      E A  LL EM  E + P+  ++  +I ++S
Sbjct: 571 TLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618


>AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23795563 FORWARD LENGTH=806
          Length = 806

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 215/452 (47%), Gaps = 25/452 (5%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +PDV     LL+ LC  ++  +A+ +   +V +G +   A +  +V            
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMV------------ 218

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
                   E G     +T+NTL+ GLC  G++ ++  L++++  KGL  +V TY  ++ G
Sbjct: 219 --------EIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K      A+ LL  +     +P++V Y+ ++  LCK+G   DA  LF ++  KG +P+
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V +YN ++   C  GRW +A  LL +M E +++P V+T+N LI++    G+  +A ++ D
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 390

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQG 392
           EM          +YN +I   CK  + D      D M     SP+  T+N I  + C   
Sbjct: 391 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAK 446

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           +V E   + + +  +           +I   C   N   A  +  EM   G  PD+ T +
Sbjct: 447 RVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCN 506

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            L+ G C    L+EALE+F +++ +    D   YN +I G CK  + D + ++F  +   
Sbjct: 507 ILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH 566

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           G  P+  TY +++ G   ++ +  A  L  ++
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKM 598



 Score =  191 bits (486), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 217/464 (46%), Gaps = 40/464 (8%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           +A    + MV  G  P V     L+  LC   +  +A  ++  +VG G+  D   Y  +V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           N +C+ G+   A+ L+ K+EE   +   V Y+ ++  LC  G  + +  L   + +KG+ 
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           PNVFTY+ +++G        +A +LL D+I R   P+++++N L++   KEG+  +A +L
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
             ++  +   P  V+YN ++   C   R+++A  +   M     SP VVT+N +I     
Sbjct: 389 CDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCR 444

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
             R ++  ++L E++R G     T+YN +I   C+   ++       +MI     P+  T
Sbjct: 445 AKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT 504

Query: 382 YNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
            N +    CE  K++EA  +F+ +                                 +M+
Sbjct: 505 CNILLYGFCENEKLEEALELFEVI---------------------------------QMS 531

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           K     D+  Y+ ++ GMC+   +DEA ++F  L  +   PD+  YN +I GFC      
Sbjct: 532 KIDL--DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAIS 589

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +  +F +M + G  P+  TY  L+ G     E+D +  L+ E+
Sbjct: 590 DANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633



 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 239/521 (45%), Gaps = 34/521 (6%)

Query: 68  VGKNDQKSKEVRLNDAFLHLEYMVGKGQK--PDVAQATQLLYDLCKSNKAR------KAV 119
           + K + KS  VRLN   L    +  KG K  P + Q T    +L   + +        A+
Sbjct: 32  IEKKNTKSGGVRLNSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKSLDDAI 91

Query: 120 RVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL 179
              + +V S     A     ++    R      A+ L  K+E         ++N L+K  
Sbjct: 92  DFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCF 151

Query: 180 CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA---------------YKERGVDEAM 224
           C   KL+ SL    +LTK G +P+V T++ LL G                  E G  EA+
Sbjct: 152 CDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAV 211

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
            L D ++  G  P ++++N L+ GLC EGR  +A  L   +  KG    VV+Y  ++  +
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGM 271

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C  G  + A  LL++M+E  + P VV Y+ +I  L   G    A  +  EM   G     
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 331

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQS 403
            +YN +I   C  G+     + L  MI R  +P+  T+NA I+   ++GK+ EA  +   
Sbjct: 332 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 391

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
           + ++   P      ++I   C K N +   + ++++     +PD  T+++++   CR   
Sbjct: 392 MLHRCIFPDTVTYNSMIYGFC-KHNRFDDAKHMFDLMA---SPDVVTFNTIIDVYCRAKR 447

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           +DE +++ R +     + +   YN LI GFC+    + + ++FQ M++ G  P+ IT  I
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 524 LVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDL 564
           L+ G   ENE      L + L + EV+  S +D  ++ Y++
Sbjct: 508 LLYGFC-ENE-----KLEEALELFEVIQMSKIDLDTVAYNI 542



 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 204/438 (46%), Gaps = 40/438 (9%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+ +A   +  MVGKG   DV     ++  +CK    + A+ ++  +  + I PD   
Sbjct: 239 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 298

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ +++ LC+ G+   A  L  ++ E G      TYN ++ G CS G+ + + +LL  + 
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           ++ + P+V T++ L+  + KE  + EA KL D+++ R   P+ V+YN ++ G CK  R +
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           DA  +F DL A   SP VV++N ++   C   R +E   LL E+    L  +  TYN LI
Sbjct: 419 DAKHMF-DLMA---SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                      A ++  EM   G      + N ++   C+  K++  ++  + +   +  
Sbjct: 475 HGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKID 534

Query: 377 PNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
            +   YN I   +C+  KV EA+ +F SL      P+H                      
Sbjct: 535 LDTVAYNIIIHGMCKGSKVDEAWDLFCSL------PIH---------------------- 566

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
                  G  PD  TY+ ++ G C +  + +A  +F  +++N + PD   YN LI G  K
Sbjct: 567 -------GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLK 619

Query: 496 YQRTDLSIEIFQRMVNKG 513
               D SIE+   M + G
Sbjct: 620 AGEIDKSIELISEMRSNG 637



 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 7/285 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE +L +A    + M+ +   PD      ++Y  CK N+   A  + +++      PD  
Sbjct: 378 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVV 433

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  +++  CR   +   MQL+ ++   G    T TYNTL+ G C    LN +  L   +
Sbjct: 434 TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              G+ P+  T + LL G  +   ++EA++L + I     + + V+YN+++ G+CK  + 
Sbjct: 494 ISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKV 553

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++A +LF  LP  G  P V +YN+++   C +    +AN L  +M +    P   TYN L
Sbjct: 554 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFN---VTATSYNPIIARLCKE 357
           I      G  +++ E++ EM  +GF+    T      II R+  E
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDE 658


>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10868400-10870382 REVERSE
           LENGTH=660
          Length = 660

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 250/508 (49%), Gaps = 34/508 (6%)

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVR----VMEMIVGSG---- 129
           V +  +F+ +    GK   PD  +A  L + +    + +++V+    V+ +I+  G    
Sbjct: 109 VIIERSFIVVFRAYGKAHLPD--KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHR 166

Query: 130 ----------------IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
                           I P+   +  ++  LC+   +  A+++   + E        TY 
Sbjct: 167 GLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYC 226

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
           TL+ GLC   ++++++ LLD +  +G  P+   Y+ L++G  K+  +    KL+D++  +
Sbjct: 227 TLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK 286

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G  PN V+YN L+ GLC +G+ + A+ L   + +    P+ V+Y  L+  L  + R  +A
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL+ M+E     +   Y++LI+ L   G+ E+A  +  +M   G       Y+ ++  
Sbjct: 347 VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPM 412
           LC+EGK +   + L++MI     PN  TY+++     + G  +EA  +++ + +K  C  
Sbjct: 407 LCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM-DKTGCSR 465

Query: 413 HDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
           + +C +V I  LC  G    A  +  +M   G  PD+  YSS+++G+C  G +D AL+++
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525

Query: 472 RIL---EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
             +   EE    PD+  YN L+ G C  +    ++++   M+++GC P+ IT    +  L
Sbjct: 526 HEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585

Query: 529 AFE-NELDIAAGLMKELYMREVLSRSTV 555
           + + N  D     ++EL +R +L R  V
Sbjct: 586 SEKSNSCDKGRSFLEELVVR-LLKRQRV 612



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 203/423 (47%), Gaps = 25/423 (5%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE R+++A L L+ M  +G  P       L+  LCK     +  ++++ +   G +
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y  L++ LC +G +  A+ L+E++         VTY TL+ GL    +   +++L
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L  + ++G   N   YS L+ G +KE   +EAM L   +  +G +PN+V Y+VL+ GLC+
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           EG+  +A E+   + A G  P+  +Y+ L++     G  EEA  +  EMD+   S +   
Sbjct: 410 EGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFC 469

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y++LI  L   GR ++A  V  +M   G      +Y+ II  LC  G +D  ++   +M+
Sbjct: 470 YSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529

Query: 372 CR---RYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML---- 423
           C+   +  P+  TYN +   LC Q  +  A  +  S+ ++   P    C   ++ L    
Sbjct: 530 CQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKS 589

Query: 424 --CRKGNTY---------------PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
             C KG ++                A  ++  M      P + T++ +VR +C+   ++ 
Sbjct: 590 NSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINA 649

Query: 467 ALE 469
           A++
Sbjct: 650 AID 652


>AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2733788-2735467 REVERSE
           LENGTH=559
          Length = 559

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 34/450 (7%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L DA   +E M    Q P     + L+  L + ++  KA+ ++ ++V SG +PD   Y 
Sbjct: 119 KLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYN 178

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++  LC++G+I  A+ L+E +   G     +TYNT+++ +  +G   Q+++      + 
Sbjct: 179 MIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQN 238

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G  P + TY+ L+E   +  G   A+++L+D+   G  P++V+YN L+   C+ G  E+ 
Sbjct: 239 GCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEV 298

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             + + + + G   + V+YN LL SLC    W+E   +L  M +    P+V+TYNILI  
Sbjct: 299 ASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILING 358

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L       +A +   +M          +YN ++  + KEG VD  ++ L  +      P 
Sbjct: 359 LCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPG 418

Query: 379 EGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
             TYN+                                  VI  L +KG    A ++ ++
Sbjct: 419 LITYNS----------------------------------VIDGLAKKGLMKKALELYHQ 444

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M   G  PD  T  SL+ G CR  +++EA ++ +             Y  +I G CK + 
Sbjct: 445 MLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKE 504

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +++IE+ + M+  GC P+E  YT +V+G+
Sbjct: 505 IEMAIEVVEIMLTGGCKPDETIYTAIVKGV 534



 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 195/392 (49%), Gaps = 1/392 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T N ++  LCS+GKL  + +L++ + +    P+  + S L+ G  +   +D+AM +L  +
Sbjct: 106 TNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVM 165

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  GG P+ ++YN+++  LCK+G    A+ L  D+   G  P V++YN ++R +   G  
Sbjct: 166 VMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNA 225

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           E+A     +  +    P ++TY +L+  +  +  + +A EVL++M   G      +YN +
Sbjct: 226 EQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSL 285

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQN 409
           +   C+ G ++ V   +  ++      N  TYN +   LC      E   I   +     
Sbjct: 286 VNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSY 345

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
           CP       +I+ LC+      A    Y+M +    PD  TY++++  M +EGM+D+A+E
Sbjct: 346 CPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIE 405

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +  +L+     P +  YN++I G  K      ++E++ +M++ G  P++IT   L+ G  
Sbjct: 406 LLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFC 465

Query: 530 FENELDIAAGLMKELYMREVLSRSTVDRLSMQ 561
             N ++ A  ++KE   R    R +  RL +Q
Sbjct: 466 RANLVEEAGQVLKETSNRGNGIRGSTYRLVIQ 497



 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 169/393 (43%), Gaps = 34/393 (8%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+  +  A + LE M   G  PDV     ++  +     A +A+R  +  + +G  P   
Sbjct: 186 KKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMI 245

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT LV  +CR      A++++E +   G     VTYN+LV   C  G L +   ++  +
Sbjct: 246 TYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHI 305

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              GL+ N  TY+ LL         DE  ++L+ +      P +++YN+L+ GLCK    
Sbjct: 306 LSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLL 365

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             AI+ F  +  +   P +V+YN +L ++  EG  ++A  LL  +      P ++TYN +
Sbjct: 366 SRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSV 425

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I  L+  G  ++A E+  +M  +G      +   +I   C+   V               
Sbjct: 426 IDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLV--------------- 470

Query: 376 SPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
                              +EA  + +   N+ N       + VI  LC+K     A ++
Sbjct: 471 -------------------EEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEV 511

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           +  M   G  PD   Y+++V+G+   GM  EA+
Sbjct: 512 VEIMLTGGCKPDETIYTAIVKGVEEMGMGSEAV 544



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 66/140 (47%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SKE  ++DA   L  +      P +     ++  L K    +KA+ +   ++ +GI PD 
Sbjct: 395 SKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDD 454

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
                L+   CR   +  A Q++++    G      TY  +++GLC   ++  ++++++ 
Sbjct: 455 ITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEI 514

Query: 195 LTKKGLKPNVFTYSFLLEGA 214
           +   G KP+   Y+ +++G 
Sbjct: 515 MLTGGCKPDETIYTAIVKGV 534


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 240/505 (47%), Gaps = 49/505 (9%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLC-----KSNKARKAVRVMEMIVGSG 129
           +KE R++ A   L+ M       D+     +LY++C     K  K   A +    I  +G
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADI-----VLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           + PD   YT ++  LC+   +  A+++ E +E++     T  YNT++ G  S GK +++ 
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            LL+R   KG  P+V  Y+ +L    K   VDEA+K+ ++ + +   PNL +YN+L+  L
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE-MKKDAAPNLSTYNILIDML 387

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
           C+ G+ + A EL   +   G  P+V + NI++  LC   + +EA  +  EMD +  +P  
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE 447

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK--------VD 361
           +T+  LI  L   GR + A++V ++M  S     +  Y  +I      G+         D
Sbjct: 448 ITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507

Query: 362 LVVQ--------------CL-------------DQMICRRYSPNEGTYNA-IAMLCEQGK 393
           ++ Q              C+             +++  RR+ P+  +Y+  I  L + G 
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
             E + +F S+  +Q C +     N VI   C+ G    A+Q+L EM   GF P   TY 
Sbjct: 568 ANETYELFYSM-KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYG 626

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           S++ G+ +   LDEA  +F   +      ++  Y++LI GF K  R D +  I + ++ K
Sbjct: 627 SVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 686

Query: 513 GCVPNEITYTILVEGLAFENELDIA 537
           G  PN  T+  L++ L    E++ A
Sbjct: 687 GLTPNLYTWNSLLDALVKAEEINEA 711



 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 241/521 (46%), Gaps = 72/521 (13%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P V    +++    K+NK R+   V++M+      P  + YT L+       +    
Sbjct: 128 GFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + L ++++E G++     + TL++G    G+++ +L LLD +    L  ++  Y+  ++ 
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF------RDLP- 266
             K   VD A K   +I A G +P+ V+Y  ++  LCK  R ++A+E+F      R +P 
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 267 ----------------------------AKGFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
                                       AKG  PSV++YN +L  L   G+ +EA  +  
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367

Query: 299 EMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
           EM ++D +P++ TYNILI  L   G+ + AFE+ D M ++G      + N ++ RLCK  
Sbjct: 368 EM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 359 KVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFIFQSL------------- 404
           K+D      ++M  +  +P+E T+ + I  L + G+V +A+ +++ +             
Sbjct: 427 KLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486

Query: 405 --------------GNK-------QNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
                         G+K       QNC P        +  + + G       M  E+   
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR 546

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLS 502
            F PD+ +YS L+ G+ + G  +E  E+F  ++E   + D   YN +I GFCK  + + +
Sbjct: 547 RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKA 606

Query: 503 IEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            ++ + M  KG  P  +TY  +++GLA  + LD A  L +E
Sbjct: 607 YQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647



 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 225/466 (48%), Gaps = 8/466 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           + ++A+  LE    KG  P V     +L  L K  K  +A++V E +      P+ + Y 
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYN 381

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++ LCR G +  A +L + +++ G      T N +V  LC   KL+++  + + +  K
Sbjct: 382 ILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK 441

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
              P+  T+  L++G  K   VD+A K+ + ++      N + Y  L+      GR ED 
Sbjct: 442 VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDG 501

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            ++++D+  +  SP +   N  +  +   G  E+   +  E+      P   +Y+ILI  
Sbjct: 502 HKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHG 561

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L   G   + +E+   M   G  +   +YN +I   CK GKV+   Q L++M  + + P 
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ---NCPMHDYCKNVISMLCRKGNTYPAFQ 434
             TY + I  L +  ++ EA+ +F+   +K+   N  ++    ++I    + G    A+ 
Sbjct: 622 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIY---SSLIDGFGKVGRIDEAYL 678

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L E+ + G TP+ YT++SL+  + +   ++EAL  F+ ++E    P+   Y  LI G C
Sbjct: 679 ILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC 738

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
           K ++ + +   +Q M  +G  P+ I+YT ++ GLA    +  A  L
Sbjct: 739 KVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGAL 784



 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 221/461 (47%), Gaps = 1/461 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L+ AF   + M   G  P+V     ++  LCKS K  +A  + E +      PD   + 
Sbjct: 392 KLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++ L + G +  A ++ EK+ +   +T ++ Y +L+K   +HG+     ++   +  +
Sbjct: 452 SLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ 511

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
              P++   +  ++  +K    ++   + ++I AR   P+  SY++L+ GL K G   + 
Sbjct: 512 NCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANET 571

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            ELF  +  +G      +YNI++   C  G+  +A  LL EM  +   P+VVTY  +I  
Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
           L+   R ++A+ + +E       +    Y+ +I    K G++D     L++++ +  +PN
Sbjct: 632 LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN 691

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             T+N+ +  L +  ++ EA   FQS+   +  P       +I+ LC+      AF    
Sbjct: 692 LYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           EM K G  P + +Y++++ G+ + G + EA  +F   + N  +PD   YNA+I G     
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN 811

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
           R   +  +F+    +G   +  T  +L++ L   + L+ AA
Sbjct: 812 RAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852



 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 176/386 (45%), Gaps = 2/386 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           +YN+L+  +      +   Q+L  ++  G  P+V T   ++ G  K   + E   ++  +
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
                 P   +Y  L+        ++  + LF+ +   G+ P+V  +  L+R    EGR 
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           + A  LL EM    L   +V YN+ I S    G+ + A++   E+  +G      +Y  +
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSM 279

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQN 409
           I  LCK  ++D  V+  + +   R  P    YN + M     GK  EA+ + +    K +
Sbjct: 280 IGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGS 339

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P       +++ L + G    A ++  EM K    P+  TY+ L+  +CR G LD A E
Sbjct: 340 IPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFE 398

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +   +++    P++   N ++   CK Q+ D +  +F+ M  K C P+EIT+  L++GL 
Sbjct: 399 LRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458

Query: 530 FENELDIAAGLMKELYMREVLSRSTV 555
               +D A  + +++   +  + S V
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIV 484



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 8/396 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L+  + R  N     Q++ ++   GF     T   +V G     KL +   ++  + 
Sbjct: 101 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMR 160

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K   +P    Y+ L+         D  + L   +   G EP +  +  L+ G  KEGR +
Sbjct: 161 KFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVD 220

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            A+ L  ++ +      +V YN+ + S    G+ + A     E++   L P  VTY  +I
Sbjct: 221 SALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             L    R ++A E+ + + ++       +YN +I      GK D     L++   +   
Sbjct: 281 GVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSI 340

Query: 377 PNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           P+   YN I   L + GKV EA  +F+ +  K   P       +I MLCR G    AF++
Sbjct: 341 PSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFEL 399

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY---MPDIDNYNALILG 492
              M K G  P+  T + +V  +C+   LDEA  +F   EE DY    PD   + +LI G
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF---EEMDYKVCTPDEITFCSLIDG 456

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
             K  R D + +++++M++  C  N I YT L++  
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492


>AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29920334-29922676 REVERSE
           LENGTH=780
          Length = 780

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 229/454 (50%), Gaps = 8/454 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           +EV    AF     M+     P++     L+  L K  +   A ++ + + G GI P+  
Sbjct: 175 EEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRV 234

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L++ LC+RG+   A +L  +++  G    +V +N L+ G C  G++ ++ +LL   
Sbjct: 235 TYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLF 294

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            K G    +  YS L++G ++ R   +A +L  +++ +  +P+++ Y +L+ GL K G+ 
Sbjct: 295 EKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKI 354

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           EDA++L   +P+KG SP    YN ++++LC  G  EE   L  EM E +  P   T+ IL
Sbjct: 355 EDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTIL 414

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I S+  +G   +A E+  E+ +SG + +  ++N +I  LCK G++      L +M   R 
Sbjct: 415 ICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRP 474

Query: 376 SP-----NEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           +      +     +   + E G + +A+       +  + P       +I+  CR G+  
Sbjct: 475 ASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDID 534

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A ++L  +   G +PDS TY++L+ G+ R G  +EA ++F   ++  + P +  Y +L+
Sbjct: 535 GALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAV--YRSLM 592

Query: 491 LGFCKYQRTDLSIEIFQRMVNK-GCVPNEITYTI 523
              C+ ++  ++  ++ + + K  C+ +E    I
Sbjct: 593 TWSCRKRKVLVAFNLWMKYLKKISCLDDETANEI 626



 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 211/452 (46%), Gaps = 45/452 (9%)

Query: 120 RVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL 179
           + +E +   G+  D+ C+  L++   + G    A++   +++E   +    TYN +++ +
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 172

Query: 180 CSHGKLNQ-SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN 238
                    +  + + + K    PN++T+  L++G YK+    +A K+ DD+  RG  PN
Sbjct: 173 MREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPN 232

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
            V+Y +L++GLC+ G  +DA +LF ++   G  P  V++N LL   C  GR  EA  LL 
Sbjct: 233 RVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLR 292

Query: 299 EMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
             +++     +  Y+ LI  L    R  QAFE+   M +         Y  +I  L K G
Sbjct: 293 LFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAG 352

Query: 359 KVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK 417
           K++  ++ L  M  +  SP+   YNA I  LC +G ++E   +   +   ++ P  D C 
Sbjct: 353 KIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFP--DACT 410

Query: 418 NVISM--LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA-------- 467
           + I +  +CR G    A ++  E+ K G +P   T+++L+ G+C+ G L EA        
Sbjct: 411 HTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME 470

Query: 468 ----------------------------LEIFRIL---EENDYMPDIDNYNALILGFCKY 496
                                       L+ +R L    +    PDI +YN LI GFC+ 
Sbjct: 471 VGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRA 530

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
              D ++++   +  KG  P+ +TY  L+ GL
Sbjct: 531 GDIDGALKLLNVLQLKGLSPDSVTYNTLINGL 562



 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 221/506 (43%), Gaps = 78/506 (15%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+ R +DA    + M G+G  P+    T L+  LC+   A  A ++   +  SG  PD+ 
Sbjct: 210 KKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSV 269

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  L++  C+ G +  A +L+   E+ GF  G   Y++L+ GL    +  Q+ +L   +
Sbjct: 270 AHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANM 329

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            KK +KP++  Y+ L++G  K   +++A+KLL  + ++G  P+   YN ++  LC  G  
Sbjct: 330 LKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLL 389

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           E+   L  ++      P   ++ IL+ S+C  G   EA  +  E+++   SPSV T+N L
Sbjct: 390 EEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNAL 449

Query: 316 ITSLSLHGRTEQAFEVL-----------------------DEMTRSGFNVTA-------- 344
           I  L   G  ++A  +L                       D M  SG  + A        
Sbjct: 450 IDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFA 509

Query: 345 --------TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
                    SYN +I   C+ G +D  ++ L+ +  +  SP+  TYN  I  L   G+ +
Sbjct: 510 DTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREE 569

Query: 396 EAFFIFQSLGNKQNCP--------------------------------MHDYCKNVISML 423
           EAF +F +  + ++ P                                + D   N I   
Sbjct: 570 EAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANEIEQC 629

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYT---YSSLVRGMCREGMLDEALEIFRILEENDYM 480
            ++G T  A + L E+       D  T   Y+  + G+C+ G   EAL +F +L E   +
Sbjct: 630 FKEGETERALRRLIELDT---RKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKIL 686

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIF 506
               +   LI G CK ++ D +IE+F
Sbjct: 687 VTPPSCVKLIHGLCKREQLDAAIEVF 712



 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 40/430 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R   AF     M+ K  KPD+   T L+  L K+ K   A++++  +   GI PD  CY 
Sbjct: 318 RYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYN 377

Query: 139 HLVNFLCRRGNI--GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
            ++  LC RG +  G ++QL E  E   F     T+  L+  +C +G + ++ ++   + 
Sbjct: 378 AVIKALCGRGLLEEGRSLQL-EMSETESFPDA-CTHTILICSMCRNGLVREAEEIFTEIE 435

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K G  P+V T++ L++G  K   + EA  LL  +    G P  +   +  +G     R+ 
Sbjct: 436 KSGCSPSVATFNALIDGLCKSGELKEARLLLHKM--EVGRPASLFLRLSHSG----NRSF 489

Query: 257 DA-------IELFRDLPA---KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
           D        ++ +RDL      G SP +VSYN+L+   C  G  + A  LL  +  + LS
Sbjct: 490 DTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLS 549

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV----DL 362
           P  VTYN LI  L   GR E+AF++     +  F  +   Y  ++   C++ KV    +L
Sbjct: 550 PDSVTYNTLINGLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNL 607

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQN-CPMHDYCKNVIS 421
            ++ L ++ C     ++ T N I    ++G+ + A      L  +++   +  Y   +I 
Sbjct: 608 WMKYLKKISCL----DDETANEIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIG 663

Query: 422 MLCRKGNTYPA---FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
            LC+ G  + A   F +L E  K   TP S     L+ G+C+   LD A+E+F    +N+
Sbjct: 664 -LCQSGRFHEALMVFSVLRE-KKILVTPPSCV--KLIHGLCKREQLDAAIEVFLYTLDNN 719

Query: 479 Y--MPDIDNY 486
           +  MP + NY
Sbjct: 720 FKLMPRVCNY 729



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 168/375 (44%), Gaps = 37/375 (9%)

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           +  +++   ++ G D   + L+++ + G   +   + VL++   K G  E A+E F  + 
Sbjct: 95  FGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMK 154

Query: 267 AKGFSPSVVSYNILLRSLCYEGR-WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
                P V +YN++LR +  E   +  A  +  EM + + SP++ T+ IL+  L   GRT
Sbjct: 155 EFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRT 214

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
             A ++ D+MT  G +    +Y  +I+ LC+ G  D   +   +M      P+   +NA+
Sbjct: 215 SDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNAL 274

Query: 386 A-MLCEQGKVQEAFFIFQ-------SLGNKQNCPMHD------------------YCKNV 419
               C+ G++ EAF + +        LG +    + D                    KN+
Sbjct: 275 LDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNI 334

Query: 420 ----------ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
                     I  L + G    A ++L  M   G +PD+Y Y+++++ +C  G+L+E   
Sbjct: 335 KPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRS 394

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +   + E +  PD   +  LI   C+      + EIF  +   GC P+  T+  L++GL 
Sbjct: 395 LQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLC 454

Query: 530 FENELDIAAGLMKEL 544
              EL  A  L+ ++
Sbjct: 455 KSGELKEARLLLHKM 469



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 148/367 (40%), Gaps = 85/367 (23%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD    T L+  +C++   R+A  +   I  SG  P  A +  L++ LC+ G +  A  L
Sbjct: 406 PDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLL 465

Query: 157 VEKVE-----------------------------------EHGFQTGT----VTYNTLVK 177
           + K+E                                    H   TG+    V+YN L+ 
Sbjct: 466 LHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLIN 525

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL---DDI---- 230
           G C  G ++ +L+LL+ L  KGL P+  TY+ L+ G ++    +EA KL    DD     
Sbjct: 526 GFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSP 585

Query: 231 -IARG-------GEPNLVSYNVLLTGL----------------C-KEGRTEDAIELFRDL 265
            + R            LV++N+ +  L                C KEG TE A+    +L
Sbjct: 586 AVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCFKEGETERALRRLIEL 645

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL---SPSVVTYNILITSLSLH 322
             +    ++  Y I L  LC  GR+ EA  + + + E+ +    PS V    LI  L   
Sbjct: 646 DTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVK---LIHGLCKR 702

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG-KVDLVVQCLDQMICRRYSPNEGT 381
            + + A EV      + F +     N +++ L +   K+++V Q  ++M           
Sbjct: 703 EQLDAAIEVFLYTLDNNFKLMPRVCNYLLSSLLESTEKMEIVSQLTNRM-------ERAG 755

Query: 382 YNAIAML 388
           YN  +ML
Sbjct: 756 YNVDSML 762


>AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:7056254-7057954 FORWARD
           LENGTH=566
          Length = 566

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 102 ATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           ++ LL+ L +S  ++   R+ E+I+ S +   +      +N      +I Y  ++V+   
Sbjct: 77  SSSLLHYLTESETSKTKFRLYEVIINSYVQSQS------LNL-----SISYFNEMVD--- 122

Query: 162 EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
            +GF  G+  +N L+  +      NQ     +   K  +  +V+++  L++G  +   ++
Sbjct: 123 -NGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIE 180

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           ++  LL ++   G  PN+V Y  L+ G CK+G  E A +LF ++   G   +  +Y +L+
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
             L   G  ++   +  +M E+ + P++ TYN ++  L   GRT+ AF+V DEM   G +
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI 400
               +YN +I  LC+E K++   + +DQM     +PN  TYN  I   C  GK+ +A  +
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
            + L ++   P       ++S  CRKG+T  A +M+ EM + G  P   TY+ L+    R
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
              +++A+++   +EE   +PD+  Y+ LI GFC   + + +  +F+ MV K C PNE+ 
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480

Query: 521 YTILVEGLAFENELDIAAGLMKELYMREV 549
           Y  ++ G   E     A  L+KE+  +E+
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEEKEL 509



 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 204/417 (48%), Gaps = 34/417 (8%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           S ++ D   +  L+   C  G I  +  L+ ++ E GF    V Y TL+ G C  G++ +
Sbjct: 157 SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
           +  L   + K GL  N  TY+ L+ G +K     +  ++ + +   G  PNL +YN ++ 
Sbjct: 217 AKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
            LCK+GRT+DA ++F ++  +G S ++V+YN L+  LC E +  EAN ++ +M  + ++P
Sbjct: 277 QLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP 336

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           +++TYN LI      G+  +A  +  ++   G + +  +YN +++  C++G      + +
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV 396

Query: 368 DQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            +M  R   P++ TY  +                                  I    R  
Sbjct: 397 KEMEERGIKPSKVTYTIL----------------------------------IDTFARSD 422

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
           N   A Q+   M + G  PD +TYS L+ G C +G ++EA  +F+ + E +  P+   YN
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +ILG+CK   +  ++++ + M  K   PN  +Y  ++E L  E +   A  L++++
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539



 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 188/365 (51%), Gaps = 1/365 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P+V   T L+   CK  +  KA  +   +   G++ +   YT L+N L + G     
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++ EK++E G      TYN ++  LC  G+   + Q+ D + ++G+  N+ TY+ L+ G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             +E  ++EA K++D + + G  PNL++YN L+ G C  G+   A+ L RDL ++G SPS
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           +V+YNIL+   C +G    A  ++ EM+E  + PS VTY ILI + +     E+A ++  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQG 392
            M   G      +Y+ +I   C +G+++   +    M+ +   PNE  YN + +  C++G
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
               A  + + +  K+  P     + +I +LC++  +  A +++ +M   G  P +   S
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILS 552

Query: 453 SLVRG 457
            + R 
Sbjct: 553 LISRA 557



 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 193/372 (51%), Gaps = 3/372 (0%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           DV     L+   C++ +  K+  ++  +   G  P+   YT L++  C++G I  A  L 
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++ + G      TY  L+ GL  +G   Q  ++ +++ + G+ PN++TY+ ++    K+
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
               +A ++ D++  RG   N+V+YN L+ GLC+E +  +A ++   + + G +P++++Y
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N L+   C  G+  +A  L  ++    LSPS+VTYNIL++     G T  A +++ EM  
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQE 396
            G   +  +Y  +I    +   ++  +Q    M      P+  TY+  I   C +G++ E
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNE 461

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISM-LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           A  +F+S+  K NC  ++   N + +  C++G++Y A ++L EM +    P+  +Y  ++
Sbjct: 462 ASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMI 520

Query: 456 RGMCREGMLDEA 467
             +C+E    EA
Sbjct: 521 EVLCKERKSKEA 532



 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
            F   E M   G  P++     ++  LCK  + + A +V + +   G+  +   Y  L+ 
Sbjct: 252 GFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG 311

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
            LCR   +  A ++V++++  G     +TYNTL+ G C  GKL ++L L   L  +GL P
Sbjct: 312 GLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           ++ TY+ L+ G  ++     A K++ ++  RG +P+ V+Y +L+    +    E AI+L 
Sbjct: 372 SLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLR 431

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +   G  P V +Y++L+   C +G+  EA+ L   M E++  P+ V YN +I      
Sbjct: 432 LSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKE 491

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           G + +A ++L EM          SY  +I  LCKE K     + +++MI     P+    
Sbjct: 492 GSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSIL 551

Query: 383 NAIA 386
           + I+
Sbjct: 552 SLIS 555



 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 153/282 (54%), Gaps = 1/282 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           +Q  K+ R  DAF   + M  +G   ++     L+  LC+  K  +A +V++ +   GI 
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y  L++  C  G +G A+ L   ++  G     VTYN LV G C  G  + + ++
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           +  + ++G+KP+  TY+ L++   +   +++A++L   +   G  P++ +Y+VL+ G C 
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           +G+  +A  LF+ +  K   P+ V YN ++   C EG    A  LL EM+E++L+P+V +
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVAS 515

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
           Y  +I  L    ++++A  ++++M  SG +  +TS   +I+R
Sbjct: 516 YRYMIEVLCKERKSKEAERLVEKMIDSGID-PSTSILSLISR 556


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 224/448 (50%), Gaps = 3/448 (0%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           AF  L  M+ +G   +V     LL  LC++ +  KAV ++  +  + ++PD   Y  ++ 
Sbjct: 126 AFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIR 185

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
             C    +  A++L  +++  G     VT+  L+   C  GK+++++  L  +   GL+ 
Sbjct: 186 GFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEA 245

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           ++  Y+ L+ G      +D    L D+++ RG  P  ++YN L+ G CK G+ ++A E+F
Sbjct: 246 DLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +  +G  P+V +Y  L+  LC  G+ +EA  LL  M E+D  P+ VTYNI+I  L   
Sbjct: 306 EFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD 365

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI--CRRYSPNEG 380
           G    A E+++ M +        +YN ++  LC +G +D   + L  M+       P+  
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 381 TYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
           +YNA I  LC++ ++ +A  I+  L  K           +++   + G+   A ++  ++
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRT 499
           +      +S TY++++ G C+ GML+ A  +   +  ++  P + +YN L+   CK    
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545

Query: 500 DLSIEIFQRMVNKGCVPNEITYTILVEG 527
           D +  +F+ M      P+ +++ I+++G
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDG 573



 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 233/468 (49%), Gaps = 11/468 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M G G    +     L+   CK+ K  +A+  ++ +   G+  D   YT L+   C  G 
Sbjct: 203 MKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGE 262

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +     L ++V E G     +TYNTL++G C  G+L ++ ++ + + ++G++PNV+TY+ 
Sbjct: 263 LDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTG 322

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++G        EA++LL+ +I +  EPN V+YN+++  LCK+G   DA+E+   +  + 
Sbjct: 323 LIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRR 382

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEM--DEEDLSPSVVTYNILITSLSLHGRTEQ 327
             P  ++YNILL  LC +G  +EA+ LL  M  D     P V++YN LI  L    R  Q
Sbjct: 383 TRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQ 442

Query: 328 AFEVLD---EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
           A ++ D   E   +G  VT    N ++    K G V+  ++   Q+   +   N  TY A
Sbjct: 443 ALDIYDLLVEKLGAGDRVTT---NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499

Query: 385 -IAMLCEQGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
            I   C+ G +  A  +   +   +  P + DY   ++S LC++G+   A+++  EM + 
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDY-NCLLSSLCKEGSLDQAWRLFEEMQRD 558

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLS 502
              PD  +++ ++ G  + G +  A  +   +      PD+  Y+ LI  F K    D +
Sbjct: 559 NNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEA 618

Query: 503 IEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           I  F +MV+ G  P+      +++    + E D    L+K+L  ++++
Sbjct: 619 ISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIV 666



 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/537 (26%), Positives = 264/537 (49%), Gaps = 8/537 (1%)

Query: 11  AANLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGK 70
           A +L  + RR +    ++S    +R F   K   + L  A   +      ++L  W +  
Sbjct: 161 AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN-EMKGSGCSWSLVTWGI-L 218

Query: 71  NDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI 130
            D   K  ++++A   L+ M   G + D+   T L+   C   +  +   + + ++  G 
Sbjct: 219 IDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD 278

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
            P A  Y  L+   C+ G +  A ++ E + E G +    TY  L+ GLC  GK  ++LQ
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQ 338

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           LL+ + +K  +PN  TY+ ++    K+  V +A+++++ +  R   P+ ++YN+LL GLC
Sbjct: 339 LLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLC 398

Query: 251 KEGRTEDAIE-LFRDLPAKGFS-PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
            +G  ++A + L+  L    ++ P V+SYN L+  LC E R  +A  +   + E+  +  
Sbjct: 399 AKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGD 458

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
            VT NIL+ S    G   +A E+  +++ S     + +Y  +I   CK G +++    L 
Sbjct: 459 RVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLC 518

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
           +M      P+   YN  ++ LC++G + +A+ +F+ +    N P       +I    + G
Sbjct: 519 KMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAG 578

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
           +   A  +L  M++ G +PD +TYS L+    + G LDEA+  F  + ++ + PD    +
Sbjct: 579 DIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICD 638

Query: 488 ALILGFCKYQ-RTDLSIEIFQRMVNKGCVPN-EITYTILVEGLAFENELDIAAGLMK 542
           + +L +C  Q  TD   E+ +++V+K  V + E+T T++         +D+A  L++
Sbjct: 639 S-VLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLR 694



 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 211/402 (52%), Gaps = 3/402 (0%)

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
           G+A  ++  + + GF      +N L+KGLC + +  +++ LL  + +  L P+VF+Y+ +
Sbjct: 124 GFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTV 183

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           + G  + + +++A++L +++   G   +LV++ +L+   CK G+ ++A+   +++   G 
Sbjct: 184 IRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGL 243

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
              +V Y  L+R  C  G  +    L  E+ E   SP  +TYN LI      G+ ++A E
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASE 303

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLC 389
           + + M   G      +Y  +I  LC  GK    +Q L+ MI +   PN  TYN I   LC
Sbjct: 304 IFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLC 363

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK-CGFT-PD 447
           + G V +A  I + +  ++  P +     ++  LC KG+   A ++LY M K   +T PD
Sbjct: 364 KDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPD 423

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             +Y++L+ G+C+E  L +AL+I+ +L E     D    N L+    K    + ++E+++
Sbjct: 424 VISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWK 483

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           ++ +   V N  TYT +++G      L++A GL+ ++ + E+
Sbjct: 484 QISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSEL 525



 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 220/453 (48%), Gaps = 6/453 (1%)

Query: 106 LYDLCKSN--KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           L  LC+ +  + + AV V +  V SG    A    +L+  L R  N   A     K+ E 
Sbjct: 43  LRSLCEDSNPQLKNAVSVFQQAVDSGS-SLAFAGNNLMAKLVRSRNHELAFSFYRKMLET 101

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                 V+ + L++      K   +  +L  + K+G   NV+ ++ LL+G  +     +A
Sbjct: 102 DTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKA 161

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           + LL ++      P++ SYN ++ G C+    E A+EL  ++   G S S+V++ IL+ +
Sbjct: 162 VSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDA 221

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
            C  G+ +EA G L EM    L   +V Y  LI      G  ++   + DE+   G +  
Sbjct: 222 FCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPC 281

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQ 402
           A +YN +I   CK G++    +  + MI R   PN  TY   I  LC  GK +EA  +  
Sbjct: 282 AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLN 341

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
            +  K   P       +I+ LC+ G    A +++  M K    PD+ TY+ L+ G+C +G
Sbjct: 342 LMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKG 401

Query: 463 MLDEALE-IFRILEENDYM-PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
            LDEA + ++ +L+++ Y  PD+ +YNALI G CK  R   +++I+  +V K    + +T
Sbjct: 402 DLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVT 461

Query: 521 YTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
             IL+       +++ A  L K++   +++  S
Sbjct: 462 TNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494


>AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20370293-20372848 FORWARD
           LENGTH=851
          Length = 851

 Score =  193 bits (491), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 219/437 (50%), Gaps = 5/437 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P V     ++    K  K  +A+++ +    +G+     C T ++++LC++G    A
Sbjct: 404 GLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNT-ILSWLCKQGKTDEA 462

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            +L+ K+E  G     V+YN ++ G C    ++ +  +   + +KGLKPN +TYS L++G
Sbjct: 463 TELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDG 522

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL-PAKGFSP 272
            ++      A+++++ + +   E N V Y  ++ GLCK G+T  A EL  ++   K    
Sbjct: 523 CFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCV 582

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           S +SYN ++     EG  + A     EM    +SP+V+TY  L+  L  + R +QA E+ 
Sbjct: 583 SCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMR 642

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
           DEM   G  +   +Y  +I   CK   ++       +++    +P++  YN+ I+     
Sbjct: 643 DEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNL 702

Query: 392 GKVQEAFFIFQS-LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           G +  A  +++  L +   C +  Y   +I  L + GN   A ++  EM   G  PD   
Sbjct: 703 GNMVAALDLYKKMLKDGLRCDLGTYT-TLIDGLLKDGNLILASELYTEMQAVGLVPDEII 761

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y+ +V G+ ++G   + +++F  +++N+  P++  YNA+I G  +    D +  +   M+
Sbjct: 762 YTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEML 821

Query: 511 NKGCVPNEITYTILVEG 527
           +KG +P+  T+ ILV G
Sbjct: 822 DKGILPDGATFDILVSG 838



 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 229/488 (46%), Gaps = 44/488 (9%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P     T ++    K      A+R+ + ++  GI  +    T L+   C+  ++  A+ L
Sbjct: 302 PSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVL 361

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            +K+E+ G    +VT++ L++    +G++ ++L+   ++   GL P+VF    +++G  K
Sbjct: 362 FDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLK 421

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
            +  +EA+KL D+     G  N+   N +L+ LCK+G+T++A EL   + ++G  P+VVS
Sbjct: 422 GQKHEEALKLFDESF-ETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVS 480

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN ++   C +   + A  + + + E+ L P+  TY+ILI     +   + A EV++ MT
Sbjct: 481 YNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMT 540

Query: 337 RSGFNVTATSYNPIIARLCK------------------------------------EGKV 360
            S   V    Y  II  LCK                                    EG++
Sbjct: 541 SSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEM 600

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQ---NCPMHDYC 416
           D  V   ++M     SPN  TY ++   LC+  ++ +A  +   + NK    + P +   
Sbjct: 601 DSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGA- 659

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +I   C++ N   A  +  E+ + G  P    Y+SL+ G    G +  AL++++ + +
Sbjct: 660 --LIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
           +    D+  Y  LI G  K     L+ E++  M   G VP+EI YT++V GL+ + +   
Sbjct: 718 DGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVK 777

Query: 537 AAGLMKEL 544
              + +E+
Sbjct: 778 VVKMFEEM 785



 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 227/480 (47%), Gaps = 14/480 (2%)

Query: 70  KNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG 129
           K+ Q    V + +  L L+ +      P      + L  L + N   +A  +   +V  G
Sbjct: 175 KDRQTDHAVDIVNQMLELDVI------PFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           +  D      L+    R      A++++ +  E G +  ++ Y+  V+  C    L  + 
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288

Query: 190 QLLDRLTKKGL-KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
            LL  + +K L  P+  TY+ ++  + K+  +D+A++L D++++ G   N+V+   L+TG
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
            CK      A+ LF  +  +G SP+ V++++L+      G  E+A     +M+   L+PS
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPS 408

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGF-NVTATSYNPIIARLCKEGKVDLVVQCL 367
           V   + +I       + E+A ++ DE   +G  NV     N I++ LCK+GK D   + L
Sbjct: 409 VFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVC--NTILSWLCKQGKTDEATELL 466

Query: 368 DQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC-R 425
            +M  R   PN  +YN + +  C Q  +  A  +F ++  K   P ++Y  +++   C R
Sbjct: 467 SKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKP-NNYTYSILIDGCFR 525

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF-RILEENDYMPDID 484
             +   A +++  MT      +   Y +++ G+C+ G   +A E+   ++EE        
Sbjct: 526 NHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCM 585

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +YN++I GF K    D ++  ++ M   G  PN ITYT L+ GL   N +D A  +  E+
Sbjct: 586 SYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEM 645



 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 129/242 (53%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE  ++ A    E M G G  P+V   T L+  LCK+N+  +A+ + + +   G+  D  
Sbjct: 596 KEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIP 655

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L++  C+R N+  A  L  ++ E G       YN+L+ G  + G +  +L L  ++
Sbjct: 656 AYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKM 715

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            K GL+ ++ TY+ L++G  K+  +  A +L  ++ A G  P+ + Y V++ GL K+G+ 
Sbjct: 716 LKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQF 775

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
              +++F ++     +P+V+ YN ++     EG  +EA  L  EM ++ + P   T++IL
Sbjct: 776 VKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 835

Query: 316 IT 317
           ++
Sbjct: 836 VS 837



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 164/375 (43%), Gaps = 38/375 (10%)

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD---------------------------- 221
           +L+D     G + N   +++LL    K+R  D                            
Sbjct: 149 KLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSAL 208

Query: 222 -------EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
                  EA +L   ++A G + + V+  +L+    +E +  +A+E+      +G  P  
Sbjct: 209 VQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDS 268

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLS-PSVVTYNILITSLSLHGRTEQAFEVLD 333
           + Y++ +++ C       AN LL EM E+ L  PS  TY  +I +    G  + A  + D
Sbjct: 269 LLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKD 328

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
           EM   G ++   +   +I   CK   +   +   D+M     SPN  T++  I    + G
Sbjct: 329 EMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNG 388

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           ++++A   ++ +      P   +   +I    +      A ++  E  + G   + +  +
Sbjct: 389 EMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCN 447

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           +++  +C++G  DEA E+   +E     P++ +YN ++LG C+ +  DL+  +F  ++ K
Sbjct: 448 TILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEK 507

Query: 513 GCVPNEITYTILVEG 527
           G  PN  TY+IL++G
Sbjct: 508 GLKPNNYTYSILIDG 522



 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 62/124 (50%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G + D+   T L+  L K      A  +   +   G++PD   YT +VN L ++G 
Sbjct: 715 MLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQ 774

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
               +++ E+++++      + YN ++ G    G L+++ +L D +  KG+ P+  T+  
Sbjct: 775 FVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDI 834

Query: 210 LLEG 213
           L+ G
Sbjct: 835 LVSG 838


>AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2056999-2060242 REVERSE
           LENGTH=997
          Length = 997

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 210/453 (46%), Gaps = 19/453 (4%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           LC + K  KA  V+  ++G G IPD + Y+ ++N+LC    +  A  L E+++  G    
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
             TY  +V   C  G + Q+ +  + + + G  PNV TY+ L+    K + V  A +L +
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF------RDLPAKGF----------SP 272
            +++ G  PN+V+Y+ L+ G CK G+ E A ++F      +D+P               P
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +VV+Y  LL   C   R EEA  LL  M  E   P+ + Y+ LI  L   G+ ++A EV 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
            EM+  GF  T  +Y+ +I R  K  + DL  + L +M+    +PN   Y   I  LC+ 
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           GK  EA+ + Q +  K   P       +I      G      ++L  M   G  P+  TY
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
             L+   C+ G LD A  +   +++  +      Y  +I GF K      S+ +   +  
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIGQ 875

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
               P    Y +L++ L     L++A  L++E+
Sbjct: 876 DDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEV 908



 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 218/469 (46%), Gaps = 23/469 (4%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD    T+L+  LC+++   +A+  +  +  +  +P+   Y+ L+     +  +G   ++
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           +  +   G       +N+LV   C+ G  + + +LL ++ K G  P    Y+ L+     
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICG 419

Query: 217 ERG------VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           ++       +D A K   +++A G   N ++ +     LC  G+ E A  + R++  +GF
Sbjct: 420 DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGF 479

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P   +Y+ +L  LC   + E A  L  EM    L   V TY I++ S    G  EQA +
Sbjct: 480 IPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLC 389
             +EM   G      +Y  +I    K  KV    +  + M+     PN  TY+A I   C
Sbjct: 540 WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHD-YCK---------NVISM------LCRKGNTYPAF 433
           + G+V++A  IF+ +   ++ P  D Y K         NV++        C+      A 
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           ++L  M+  G  P+   Y +L+ G+C+ G LDEA E+   + E+ +   +  Y++LI  +
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
            K +R DL+ ++  +M+   C PN + YT +++GL    + D A  LM+
Sbjct: 720 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 221/476 (46%), Gaps = 33/476 (6%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P+V   + LL       +  +  RV+ M++  G  P    +  LV+  C  G+  YA +L
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-----------KPNVF 205
           ++K+ + G   G V YN L+  +C   K + +  LLD L +K             K NV 
Sbjct: 395 LKKMVKCGHMPGYVVYNILIGSICG-DKDSLNCDLLD-LAEKAYSEMLAAGVVLNKINVS 452

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           +++  L  A K    ++A  ++ ++I +G  P+  +Y+ +L  LC   + E A  LF ++
Sbjct: 453 SFTRCLCSAGK---YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
              G    V +Y I++ S C  G  E+A     EM E   +P+VVTY  LI +     + 
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKV 569

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI-----------CRR 374
             A E+ + M   G      +Y+ +I   CK G+V+   Q  ++M             ++
Sbjct: 570 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 375 YS-----PNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           Y      PN  TY A+    C+  +V+EA  +  ++  +   P       +I  LC+ G 
Sbjct: 630 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 689

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              A ++  EM++ GF    YTYSSL+    +    D A ++   + EN   P++  Y  
Sbjct: 690 LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTE 749

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +I G CK  +TD + ++ Q M  KGC PN +TYT +++G     +++    L++ +
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERM 805



 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 196/402 (48%), Gaps = 23/402 (5%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA------------ 134
            E M+ +G  P++   + L+   CK+ +  KA ++ E + GS  +PD             
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE 635

Query: 135 ----ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
                 Y  L++  C+   +  A +L++ +   G +   + Y+ L+ GLC  GKL+++ +
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           +   +++ G    ++TYS L++  +K +  D A K+L  ++     PN+V Y  ++ GLC
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K G+T++A +L + +  KG  P+VV+Y  ++      G+ E    LL  M  + ++P+ V
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TY +LI     +G  + A  +L+EM ++ +      Y  +I    KE    L +  LD++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGL--LDEI 873

Query: 371 ICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK---NVISMLCRK 426
                +P    Y   I  L +  +++ A  + + +    +  + DY     ++I  LC  
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT-FSATLVDYSSTYNSLIESLCLA 932

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
                AFQ+  EMTK G  P+  ++ SL++G+ R   + EAL
Sbjct: 933 NKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 974



 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 200/429 (46%), Gaps = 36/429 (8%)

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
           LC+ G    A+ LVE      F   TV Y  L+ GLC      +++  L+R+      PN
Sbjct: 280 LCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           V TYS LL G   ++ +    ++L+ ++  G  P+   +N L+   C  G    A +L +
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE----EDLSPSVVTYNILITS- 318
            +   G  P  V YNIL+ S+C  G  +  N  L ++ E    E L+  VV   I ++S 
Sbjct: 397 KMVKCGHMPGYVVYNILIGSIC--GDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSF 454

Query: 319 ---LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
              L   G+ E+AF V+ EM   GF    ++Y+ ++  LC   K++L     ++M  +R 
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM--KRG 512

Query: 376 SPNEGTYNAIAML---CEQGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYP 431
                 Y    M+   C+ G +++A   F  +      P +  Y   + + L  K  +Y 
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSY- 571

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID------- 484
           A ++   M   G  P+  TYS+L+ G C+ G +++A +IF  +  +  +PD+D       
Sbjct: 572 ANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD 631

Query: 485 ---------NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
                     Y AL+ GFCK  R + + ++   M  +GC PN+I Y  L++GL    +LD
Sbjct: 632 DNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLD 691

Query: 536 IAAGLMKEL 544
            A  +  E+
Sbjct: 692 EAQEVKTEM 700



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 203/439 (46%), Gaps = 28/439 (6%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR----- 194
           LV   CR G+   A++ + ++++  F+    TYN L++      +L+ S  L+ R     
Sbjct: 206 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD-SASLIHREMSLA 264

Query: 195 -LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            L   G     F YS    G ++     EA+ L++        P+ V Y  L++GLC+  
Sbjct: 265 NLRMDGFTLRCFAYSLCKVGKWR-----EALTLVE---TENFVPDTVFYTKLISGLCEAS 316

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             E+A++    + A    P+VV+Y+ LL     + +      +L  M  E   PS   +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK------VDLVVQCL 367
            L+ +    G    A+++L +M + G       YN +I  +C +        +DL  +  
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAY 436

Query: 368 DQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
            +M+      N+   ++    LC  GK ++AF + + +  +   P       V++ LC  
Sbjct: 437 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
                AF +  EM + G   D YTY+ +V   C+ G++++A + F  + E    P++  Y
Sbjct: 497 SKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
            ALI  + K ++   + E+F+ M+++GC+PN +TY+ L++G     +++ A     +++ 
Sbjct: 557 TALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC----QIFE 612

Query: 547 REVLSRST--VDRLSMQYD 563
           R   S+    VD    QYD
Sbjct: 613 RMCGSKDVPDVDMYFKQYD 631



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 149/345 (43%), Gaps = 70/345 (20%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
            ++P+V     LL   CKS++  +A ++++ +   G  P+   Y  L++ LC+ G +  A
Sbjct: 634 SERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEA 693

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++  ++ EHGF     TY++L+       + + + ++L ++ +    PNV  Y+ +++G
Sbjct: 694 QEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 753

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K    DEA KL+  +  +G +PN+V+Y  ++ G    G+ E  +EL   + +KG +P+
Sbjct: 754 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813

Query: 274 VVSYNILLRSLCYEG---------------RWE------------------EANGLLAEM 300
            V+Y +L+   C  G                W                   E+ GLL E+
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEI 873

Query: 301 DEEDLSPSVV-------------------------------------TYNILITSLSLHG 323
            ++D +P +                                      TYN LI SL L  
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLAN 933

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           + E AF++  EMT+ G      S+  +I  L +  K+   +  LD
Sbjct: 934 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L  M+     P+V   T+++  LCK  K  +A ++M+M+   G  P+   YT +++    
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G I   ++L+E++   G     VTY  L+   C +G L+ +  LL+ + +     +   
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y  ++EG  KE    E++ LLD+I      P L  Y +L+  L K  R E A+ L  ++ 
Sbjct: 852 YRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVA 909

Query: 267 AKGFSPSVV----SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
              FS ++V    +YN L+ SLC   + E A  L +EM ++ + P + ++  LI  L  +
Sbjct: 910 T--FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRN 967

Query: 323 GRTEQAFEVLD 333
            +  +A  +LD
Sbjct: 968 SKISEALLLLD 978



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 137/388 (35%), Gaps = 88/388 (22%)

Query: 242 YNVLLTGLCK---EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
           YN L+  + +   E   E+ ++  RD   + F   +   N+L+R  C  G +  A   L 
Sbjct: 168 YNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFL---NVLVRKHCRNGSFSIALEELG 224

Query: 299 EMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
            + +    PS  TYN LI +     R + A  +  EM+ +   +   +       LCK G
Sbjct: 225 RLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG 284

Query: 359 KVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP------ 411
           K     + L  +    + P+   Y   I+ LCE    +EA      +      P      
Sbjct: 285 KWR---EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYS 341

Query: 412 ----------MHDYCKNVISML-------------------CRKGNTYPAFQMLYEMTKC 442
                         CK V++M+                   C  G+   A+++L +M KC
Sbjct: 342 TLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKC 401

Query: 443 GFTPDSYTY-----------------------------------------SSLVRGMCRE 461
           G  P    Y                                         SS  R +C  
Sbjct: 402 GHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSA 461

Query: 462 GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
           G  ++A  + R +    ++PD   Y+ ++   C   + +L+  +F+ M   G V +  TY
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521

Query: 522 TILVEGLAFENELDIAAGLMKELYMREV 549
           TI+V+       ++ A     E  MREV
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNE--MREV 547



 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 129/327 (39%), Gaps = 17/327 (5%)

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNL------VSYNVLLTGLCKEGRTEDAIELF- 262
           + + +   R + +A+  +DD+  R  +  L      +S ++++  L    R    I  F 
Sbjct: 94  ITQSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLRLIARPSAVISFFV 153

Query: 263 ---RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
              R +  K  +P    YN L+  +  +   +     L ++ ++D        N+L+   
Sbjct: 154 WAGRQIGYKHTAPV---YNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKH 210

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
             +G    A E L  +    F  + ++YN +I    K  ++D       +M       + 
Sbjct: 211 CRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDG 270

Query: 380 GTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            T    A  LC+ GK +EA  + ++   +   P   +   +IS LC       A   L  
Sbjct: 271 FTLRCFAYSLCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNR 327

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M      P+  TYS+L+ G   +  L     +  ++      P    +N+L+  +C    
Sbjct: 328 MRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGD 387

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILV 525
              + ++ ++MV  G +P  + Y IL+
Sbjct: 388 HSYAYKLLKKMVKCGHMPGYVVYNILI 414



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV----TYNTLVKGLCSHGKLNQ 187
           P  + Y  L++ L +   +  A++L+E+V    F    V    TYN+L++ LC   K+  
Sbjct: 880 PFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSSTYNSLIESLCLANKVET 937

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           + QL   +TKKG+ P + ++  L++G ++   + EA+ LLD I
Sbjct: 938 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 222/483 (45%), Gaps = 43/483 (8%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           +C S     A  +++ ++ SG  P+   YT L+    +    G AM+++++++E G    
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
              YN+L+ GL    +++++   L  + + GLKPN FTY   + G  +      A K + 
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546

Query: 229 DIIARGGEPNLV-----------------------------------SYNVLLTGLCKEG 253
           ++   G  PN V                                   +Y VL+ GL K  
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           + +DA E+FR++  KG +P V SY +L+      G  ++A+ +  EM EE L+P+V+ YN
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYN 666

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           +L+      G  E+A E+LDEM+  G +  A +Y  II   CK G +    +  D+M  +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 374 RYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYP 431
              P+   Y  +    C    V+ A  IF +  NK+ C       N +I+ + + G T  
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAITIFGT--NKKGCASSTAPFNALINWVFKFGKTEL 784

Query: 432 AFQMLYEMTKCGF----TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
             ++L  +    F     P+  TY+ ++  +C+EG L+ A E+F  ++  + MP +  Y 
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           +L+ G+ K  R      +F   +  G  P+ I Y++++     E     A  L+ +++ +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904

Query: 548 EVL 550
             +
Sbjct: 905 NAV 907



 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 215/485 (44%), Gaps = 48/485 (9%)

Query: 106 LYDLC-----KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV 160
           +YD C     K     KA  + + ++ SG+IP A  Y  L+   CR  N+    +L+ ++
Sbjct: 349 MYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEM 408

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
           ++        TY T+VKG+CS G L+ +  ++  +   G +PNV  Y+ L++   +    
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
            +AM++L ++  +G  P++  YN L+ GL K  R ++A     ++   G  P+  +Y   
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVV------------------------------ 310
           +        +  A+  + EM E  + P+ V                              
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588

Query: 311 -----TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
                TY +L+  L  + + + A E+  EM   G      SY  +I    K G +     
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648

Query: 366 CLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISML 423
             D+M+    +PN   YN  +   C  G++++A  +   +  K   P    YC  +I   
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYC-TIIDGY 707

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
           C+ G+   AF++  EM   G  PDS+ Y++LV G CR   ++ A+ IF    +       
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASST 766

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMV----NKGCVPNEITYTILVEGLAFENELDIAAG 539
             +NALI    K+ +T+L  E+  R++    ++   PN++TY I+++ L  E  L+ A  
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKE 826

Query: 540 LMKEL 544
           L  ++
Sbjct: 827 LFHQM 831



 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 212/464 (45%), Gaps = 17/464 (3%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK  R+++A   L  MV  G KP+       +    ++++   A + ++ +   G++P+ 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
              T L+N  C++G +  A      + + G      TY  L+ GL  + K++ + ++   
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  KG+ P+VF+Y  L+ G  K   + +A  + D+++  G  PN++ YN+LL G C+ G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            E A EL  ++  KG  P+ V+Y  ++   C  G   EA  L  EM  + L P    Y  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           L+         E+A  +     + G   +   +N +I  + K GK +L  + L++++   
Sbjct: 738 LVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS 796

Query: 375 YS----PNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCP---MHDYCKNVISMLCRK 426
           +     PN+ TYN  I  LC++G ++ A  +F  + N    P    +    N    + R+
Sbjct: 797 FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD---- 482
              +P F    E    G  PD   YS ++    +EGM  +AL +   +   + + D    
Sbjct: 857 AEMFPVFD---EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913

Query: 483 -IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            I    AL+ GF K    +++ ++ + MV    +P+  T   L+
Sbjct: 914 SISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 226/489 (46%), Gaps = 3/489 (0%)

Query: 70  KNDQKSKEVRLN-DAFLHL-EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG 127
           K +++ +   LN D  L L E M+ KG  P       L+  LCK  +   A  ++  +  
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
            G+  D   Y+ L++ L +  N   A  LV ++  HG       Y+  +  +   G + +
Sbjct: 306 LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEK 365

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
           +  L D +   GL P    Y+ L+EG  +E+ V +  +LL ++  R    +  +Y  ++ 
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           G+C  G  + A  + +++ A G  P+VV Y  L+++     R+ +A  +L EM E+ ++P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
            +  YN LI  LS   R ++A   L EM  +G    A +Y   I+   +  +     + +
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
            +M      PN+      I   C++GKV EA   ++S+ ++           +++ L + 
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
                A ++  EM   G  PD ++Y  L+ G  + G + +A  IF  + E    P++  Y
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIY 665

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           N L+ GFC+    + + E+   M  KG  PN +TY  +++G     +L  A  L  E+ +
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725

Query: 547 REVLSRSTV 555
           + ++  S V
Sbjct: 726 KGLVPDSFV 734



 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 206/509 (40%), Gaps = 59/509 (11%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P +++   LL  L + N+      V + +V   ++ D   Y  L+   CR GN+     +
Sbjct: 184 PRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDV 243

Query: 157 VEKVEEHGFQTGTV----------------------TYNTLVKGLCSHGKLNQSLQLLDR 194
           + K E+  F+T T+                      TY+ L+ GLC   +L  +  LL  
Sbjct: 244 LFKTEKE-FRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVD--------------------------------- 221
           +   G+  +  TYS L++G  K R  D                                 
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 222 --EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI 279
             +A  L D +IA G  P   +Y  L+ G C+E       EL  ++  +    S  +Y  
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           +++ +C  G  + A  ++ EM      P+VV Y  LI +   + R   A  VL EM   G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
                  YN +I  L K  ++D     L +M+     PN  TY A I+   E  +   A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
              + +      P    C  +I+  C+KG    A      M   G   D+ TY+ L+ G+
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
            +   +D+A EIFR +      PD+ +Y  LI GF K      +  IF  MV +G  PN 
Sbjct: 603 FKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNV 662

Query: 519 ITYTILVEGLAFENELDIAAGLMKELYMR 547
           I Y +L+ G     E++ A  L+ E+ ++
Sbjct: 663 IIYNMLLGGFCRSGEIEKAKELLDEMSVK 691



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 170/408 (41%), Gaps = 67/408 (16%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV +G   D    T L+  L K++K   A  +   + G GI PD   Y  L+N   + GN
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A  + +++ E G     + YN L+ G C  G++ ++ +LLD ++ KGL PN  TY  
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC------------------- 250
           +++G  K   + EA +L D++  +G  P+   Y  L+ G C                   
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGC 762

Query: 251 ---------------KEGRTEDAIELFRDLPAKGFS----PSVVSYNILLRSLCYEGRWE 291
                          K G+TE   E+   L    F     P+ V+YNI++  LC EG  E
Sbjct: 763 ASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  L  +M   +L P+V+TY  L+      GR  + F V DE   +G       Y+ II
Sbjct: 823 AAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVII 882

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
               KEG     +  +DQM  +  + ++G   +I+                         
Sbjct: 883 NAFLKEGMTTKALVLVDQMFAKN-AVDDGCKLSIST------------------------ 917

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
               C+ ++S   + G    A +++  M +  + PDS T   L+   C
Sbjct: 918 ----CRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/470 (20%), Positives = 173/470 (36%), Gaps = 110/470 (23%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           +++ L   LC+ G   ++L +++R+ ++   P    +S ++      R   E +   DD 
Sbjct: 99  SFSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIV------RCSQEFVGKSDDG 151

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  G         +L  G   +G  E+A+ +F         P +    +LL +L    R 
Sbjct: 152 VLFG---------ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRL 202

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL----DEMTRSGFNVTAT- 345
           +    +   M E ++   V TY++LI +    G  +   +VL     E   +  NV    
Sbjct: 203 DLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGAL 262

Query: 346 ----------------SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN------ 383
                           +Y+ +I  LCK  +++     L +M     S +  TY+      
Sbjct: 263 KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGL 322

Query: 384 ------------------------------AIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
                                          I ++ ++G +++A  +F  +      P  
Sbjct: 323 LKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQA 382

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD-------- 465
               ++I   CR+ N    +++L EM K       YTY ++V+GMC  G LD        
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKE 442

Query: 466 ---------------------------EALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
                                      +A+ + + ++E    PDI  YN+LI+G  K +R
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
            D +      MV  G  PN  TY   + G    +E   A   +KE  MRE
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE--MRE 550


>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
           chr2:16381647-16384250 FORWARD LENGTH=867
          Length = 867

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 223/465 (47%), Gaps = 12/465 (2%)

Query: 87  LEYMVGKGQKPDVAQA-TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           L  M GK   P   +  T ++    K     +AVRVM+ +VG GI       T LVN  C
Sbjct: 297 LREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYC 356

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
           +   +G A+ L  ++EE G     V ++ +V+  C + ++ ++++   R+    + P+  
Sbjct: 357 KGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSV 416

Query: 206 TYSFLLEGAYKERGVDEAMKLLDD----IIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
               +++G  K    + A+++ +D     IA G        N +    CK+G+ + A   
Sbjct: 417 LVHTMIQGCLKAESPEAALEIFNDSFESWIAHG-----FMCNKIFLLFCKQGKVDAATSF 471

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
            + +  KG  P+VV YN ++ + C     + A  + +EM E+ L P+  TY+ILI     
Sbjct: 472 LKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFK 531

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC-RRYSPNEG 380
           +   + A++V+++M  S F      YN II  LCK G+     + L  +I  +RYS +  
Sbjct: 532 NKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCT 591

Query: 381 TYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
           +YN+I     + G    A   ++ +      P      ++I+  C+      A +M +EM
Sbjct: 592 SYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEM 651

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRT 499
                  D   Y +L+ G C++  +  A  +F  L E   MP++  YN+LI GF    + 
Sbjct: 652 KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKM 711

Query: 500 DLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           D +I+++++MVN G   +  TYT +++GL  +  +++A+ L  EL
Sbjct: 712 DAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSEL 756



 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 183/388 (47%), Gaps = 4/388 (1%)

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
             C++G +  A   ++ +E+ G +   V YN ++   C    ++ +  +   + +KGL+P
Sbjct: 458 LFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEP 517

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           N FTYS L++G +K +    A  +++ + A   E N V YN ++ GLCK G+T  A E+ 
Sbjct: 518 NNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEML 577

Query: 263 RDL-PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           ++L   K +S S  SYN ++      G  + A     EM E   SP+VVT+  LI     
Sbjct: 578 QNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCK 637

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
             R + A E+  EM      +   +Y  +I   CK+  +        ++      PN   
Sbjct: 638 SNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSV 697

Query: 382 YNA-IAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
           YN+ I+     GK+  A  +++ + N   +C +  Y   +I  L + GN   A  +  E+
Sbjct: 698 YNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYT-TMIDGLLKDGNINLASDLYSEL 756

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRT 499
              G  PD   +  LV G+ ++G   +A ++   +++ D  P++  Y+ +I G  +    
Sbjct: 757 LDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNL 816

Query: 500 DLSIEIFQRMVNKGCVPNEITYTILVEG 527
           + +  +   M+ KG V ++  + +LV G
Sbjct: 817 NEAFRLHDEMLEKGIVHDDTVFNLLVSG 844



 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/516 (22%), Positives = 232/516 (44%), Gaps = 36/516 (6%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE  + +A   ++ MVG G    V  AT L+   CK N+  KA+ +   +   G+ PD  
Sbjct: 322 KEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKV 381

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKG----------------- 178
            ++ +V + C+   +  A++   +++       +V  +T+++G                 
Sbjct: 382 MFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDS 441

Query: 179 -----------------LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
                             C  GK++ +   L  + +KG++PNV  Y+ ++    + + +D
Sbjct: 442 FESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMD 501

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
            A  +  +++ +G EPN  +Y++L+ G  K    ++A ++   + A  F  + V YN ++
Sbjct: 502 LARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTII 561

Query: 282 RSLCYEGRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
             LC  G+  +A  +L  +  E+  S S  +YN +I      G T+ A E   EM+ +G 
Sbjct: 562 NGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGK 621

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFF 399
           +    ++  +I   CK  ++DL ++   +M       +   Y A I   C++  ++ A+ 
Sbjct: 622 SPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYT 681

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +F  L      P      ++IS     G    A  +  +M   G + D +TY++++ G+ 
Sbjct: 682 LFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLL 741

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           ++G ++ A +++  L +   +PD   +  L+ G  K  +   + ++ + M  K   PN +
Sbjct: 742 KDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVL 801

Query: 520 TYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
            Y+ ++ G   E  L+ A  L  E+  + ++   TV
Sbjct: 802 LYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTV 837



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 207/463 (44%), Gaps = 4/463 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV +   P V     +L  L +SN   +A  +   +V  G+  D      L+    R   
Sbjct: 195 MVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERK 254

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFTYS 208
              A+++  +V   G +   + ++  V+  C    L  +L LL  +  K G+  +  TY+
Sbjct: 255 PEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYT 314

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
            ++    KE  ++EA++++D+++  G   ++++   L+ G CK      A++LF  +  +
Sbjct: 315 SVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEE 374

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G +P  V +++++   C     E+A      M    ++PS V  + +I         E A
Sbjct: 375 GLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAA 434

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
            E+ ++   S         N I    CK+GKVD     L  M  +   PN   YN + + 
Sbjct: 435 LEIFNDSFESWI-AHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLA 493

Query: 389 -CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
            C    +  A  IF  +  K   P +     +I    +  +   A+ ++ +M    F  +
Sbjct: 494 HCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEAN 553

Query: 448 SYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
              Y++++ G+C+ G   +A E+ + +++E  Y     +YN++I GF K   TD ++E +
Sbjct: 554 EVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETY 613

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           + M   G  PN +T+T L+ G    N +D+A  +  E+   E+
Sbjct: 614 REMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMEL 656



 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 180/381 (47%), Gaps = 4/381 (1%)

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
            LV+  +  GF+     +N L+     + +++ ++     +  + + P V   + +L   
Sbjct: 155 NLVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSL 214

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            +   +DEA ++ + ++  G   + V+  +L+    +E + E+A+++FR + ++G  P  
Sbjct: 215 VRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDG 274

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP-SVVTYNILITSLSLHGRTEQAFEVLD 333
           + +++ +++ C       A  LL EM  +   P S  TY  +I +    G  E+A  V+D
Sbjct: 275 LLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMD 334

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
           EM   G  ++  +   ++   CK  ++   +   ++M     +P++  ++  +   C+  
Sbjct: 335 EMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNM 394

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           ++++A   +  + + +  P       +I   C K  +  A   ++  +   +    +  +
Sbjct: 395 EMEKAIEFYMRMKSVRIAPSSVLVHTMIQG-CLKAESPEAALEIFNDSFESWIAHGFMCN 453

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            +    C++G +D A    +++E+    P++  YN ++L  C+ +  DL+  IF  M+ K
Sbjct: 454 KIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEK 513

Query: 513 GCVPNEITYTILVEGLAFENE 533
           G  PN  TY+IL++G  F+N+
Sbjct: 514 GLEPNNFTYSILIDGF-FKNK 533



 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
             K      AV     +  +G  P+   +T L+N  C+   +  A+++  +++    +  
Sbjct: 600 FVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLD 659

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
              Y  L+ G C    +  +  L   L + GL PNV  Y+ L+ G      +D A+ L  
Sbjct: 660 LPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYK 719

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            ++  G   +L +Y  ++ GL K+G    A +L+ +L   G  P  + + +L+  L  +G
Sbjct: 720 KMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKG 779

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           ++ +A+ +L EM ++D++P+V+ Y+ +I      G   +AF + DEM   G     T +N
Sbjct: 780 QFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFN 839

Query: 349 PIIA 352
            +++
Sbjct: 840 LLVS 843



 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 121/238 (50%), Gaps = 5/238 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G+ P+V   T L+   CKSN+   A+ +   +    +  D   Y  L++  C++ +
Sbjct: 616 MSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKND 675

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A  L  ++ E G       YN+L+ G  + GK++ ++ L  ++   G+  ++FTY+ 
Sbjct: 676 MKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTT 735

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +++G  K+  ++ A  L  +++  G  P+ + + VL+ GL K+G+   A ++  ++  K 
Sbjct: 736 MIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKD 795

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
            +P+V+ Y+ ++     EG   EA  L  EM E+ +      +N+L++     GR E+
Sbjct: 796 VTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS-----GRVEK 848



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 148/302 (49%), Gaps = 10/302 (3%)

Query: 101 QATQLLYD-----LCKSNKARKAVRVMEMIVGSGIIP-DAACYTHLVNFLCRRGNIGYAM 154
           +A +++Y+     LCK  +  KA  +++ ++           Y  +++   + G+   A+
Sbjct: 551 EANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAV 610

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
           +   ++ E+G     VT+ +L+ G C   +++ +L++   +    LK ++  Y  L++G 
Sbjct: 611 ETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGF 670

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            K+  +  A  L  ++   G  PN+  YN L++G    G+ + AI+L++ +   G S  +
Sbjct: 671 CKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDL 730

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
            +Y  ++  L  +G    A+ L +E+ +  + P  + + +L+  LS  G+  +A ++L+E
Sbjct: 731 FTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEE 790

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           M +         Y+ +IA   +EG ++   +  D+M+ +    ++  +N    L   G+V
Sbjct: 791 MKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFN----LLVSGRV 846

Query: 395 QE 396
           ++
Sbjct: 847 EK 848


>AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10786948-10789053 REVERSE
           LENGTH=701
          Length = 701

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 262/570 (45%), Gaps = 38/570 (6%)

Query: 8   VSPAANLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWR 67
           ++  A+L++++    + CF Y  V          GF +     ++ +   DS+       
Sbjct: 95  ITVVASLASESGSMVALCFFYWAV----------GFEKFRHFMRLYLVTADSLLA----- 139

Query: 68  VGKNDQKSKEV------------RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKA 115
              N QK+ EV            RLN+A   +  M  +G  P       +L    +    
Sbjct: 140 -NGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLI 198

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
             A  V + +   G++PD++ Y  +V    R G I  A + +  + + GF     T   +
Sbjct: 199 EYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLI 258

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
           +  LC +G +N+++    ++   G KPN+  ++ L++G  K+  + +A ++L++++  G 
Sbjct: 259 LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 318

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDL-PAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
           +PN+ ++  L+ GLCK G TE A  LF  L  +  + P+V +Y  ++   C E +   A 
Sbjct: 319 KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAE 378

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            L + M E+ L P+V TY  LI      G   +A+E+++ M   GF     +YN  I  L
Sbjct: 379 MLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 438

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           CK+ +     + L++        +  TY   I   C+Q  + +A   F  + NK      
Sbjct: 439 CKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM-NKTGFEAD 497

Query: 414 DYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
               N+ I+  CR+     + ++   +   G  P   TY+S++   C+EG +D AL+ F 
Sbjct: 498 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFH 557

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            ++ +  +PD   Y +LI G CK    D + ++++ M+++G  P E+T   L       N
Sbjct: 558 NMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRN 617

Query: 533 ELDIAAGLM----KELYMREVLSRSTVDRL 558
           +   A  L+    K+L++R V  R+ V +L
Sbjct: 618 DSANAMILLEPLDKKLWIRTV--RTLVRKL 645



 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 203/432 (46%), Gaps = 5/432 (1%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           +N A  +   M+  G KP++   T L+  LCK    ++A  ++E +V +G  P+   +T 
Sbjct: 268 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 327

Query: 140 LVNFLCRRGNIGYAMQLVEK-VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           L++ LC+RG    A +L  K V    ++    TY +++ G C   KLN++  L  R+ ++
Sbjct: 328 LIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 387

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           GL PNV TY+ L+ G  K      A +L++ +   G  PN+ +YN  +  LCK+ R  +A
Sbjct: 388 GLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEA 447

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            EL     + G     V+Y IL++  C +    +A      M++      +   NILI +
Sbjct: 448 YELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAA 507

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                + +++  +   +   G   T  +Y  +I+  CKEG +DL ++    M      P+
Sbjct: 508 FCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPD 567

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TY + I+ LC++  V EA  +++++ ++   P       +    C++ ++  A  +L 
Sbjct: 568 SFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLE 627

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
            + K  +     T  +LVR +C E  +  A   F+ L E D   D     A      +  
Sbjct: 628 PLDKKLWIR---TVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESG 684

Query: 498 RTDLSIEIFQRM 509
           + +L  ++ +R+
Sbjct: 685 KNNLVTDLTERI 696



 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 121/287 (42%), Gaps = 32/287 (11%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           A+  +  M  +G  P++      +  LCK ++A +A  ++      G+  D   YT L+ 
Sbjct: 412 AYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQ 471

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
             C++ +I  A+    ++ + GF+      N L+   C   K+ +S +L   +   GL P
Sbjct: 472 EQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIP 531

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
              TY+ ++    KE  +D A+K   ++   G  P+  +Y  L++GLCK+   ++A +L+
Sbjct: 532 TKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 591

Query: 263 RDLPAKGFSPSVVS--------------------------------YNILLRSLCYEGRW 290
             +  +G SP  V+                                   L+R LC E + 
Sbjct: 592 EAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRTLVRKLCSEKKV 651

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             A     ++ E+D S   VT     T+ S  G+     ++ + ++R
Sbjct: 652 GVAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTERISR 698


>AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5690020-5691543 FORWARD
           LENGTH=507
          Length = 507

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 200/398 (50%), Gaps = 3/398 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M   G  P +     +++ +C S++  +A   +  ++  G  PD   +T L+N  C 
Sbjct: 106 FEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCH 165

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
              I  A+ L +++   GF+   VTY TL++ LC +  LN +++L +++   G +PNV T
Sbjct: 166 WNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ L+ G  +     +A  LL D++ R  EPN++++  L+    K G+  +A EL+  + 
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
                P V +Y  L+  LC  G  +EA  +   M+     P+ V Y  LI       R E
Sbjct: 286 QMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVE 345

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
              ++  EM++ G      +Y  +I   C  G+ D+  +  +QM  RR  P+  TYN + 
Sbjct: 346 DGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405

Query: 387 -MLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
             LC  GKV++A  IF+ +  ++ +  +  Y   +I  +C+ G    AF +   +   G 
Sbjct: 406 DGLCCNGKVEKALMIFEYMRKREMDINIVTY-TIIIQGMCKLGKVEDAFDLFCSLFSKGM 464

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
            P+  TY++++ G CR G++ EA  +F+ ++E+ ++P+
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 186/363 (51%), Gaps = 1/363 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G +PD+   T LL   C  N+   A+ + + I+G G  P+   YT L+  LC+  +
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           + +A++L  ++  +G +   VTYN LV GLC  G+   +  LL  + K+ ++PNV T++ 
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++   K   + EA +L + +I     P++ +Y  L+ GLC  G  ++A ++F  +   G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ V Y  L+   C   R E+   +  EM ++ +  + +TY +LI    L GR + A 
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQ 383

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-L 388
           EV ++M+         +YN ++  LC  GKV+  +   + M  R    N  TY  I   +
Sbjct: 384 EVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGM 443

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C+ GKV++AF +F SL +K   P       +IS  CR+G  + A  +  +M + GF P+ 
Sbjct: 444 CKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503

Query: 449 YTY 451
             Y
Sbjct: 504 SVY 506



 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 205/428 (47%), Gaps = 1/428 (0%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A+ +   +V S  +P    +T L++ + +       + L E+++  G      T N ++ 
Sbjct: 67  ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
            +C   +  ++   L ++ K G +P++ T++ LL G      +++A+ L D I+  G +P
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP 186

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+V+Y  L+  LCK      A+ELF  +   G  P+VV+YN L+  LC  GRW +A  LL
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            +M +  + P+V+T+  LI +    G+  +A E+ + M +        +Y  +I  LC  
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
           G +D   Q    M      PNE  Y   I   C+  +V++   IF  +  K         
Sbjct: 307 GLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITY 366

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +I   C  G    A ++  +M+     PD  TY+ L+ G+C  G +++AL IF  + +
Sbjct: 367 TVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRK 426

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
            +   +I  Y  +I G CK  + + + ++F  + +KG  PN ITYT ++ G      +  
Sbjct: 427 REMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHE 486

Query: 537 AAGLMKEL 544
           A  L K++
Sbjct: 487 ADSLFKKM 494



 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 179/386 (46%), Gaps = 10/386 (2%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF--------TYSFLLEGAYKERGVDEA 223
           + ++VKG   H      LQ+ +  T   L    F        +Y  +L         ++A
Sbjct: 9   FASIVKGFHLHSH-RHRLQISNPRTAASLSLCGFCFWIRAFSSYRKILRNGLHNLQFNDA 67

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           + L   ++     P+++ +  LL+ + K  R +  I LF  +   G  P + + NI++  
Sbjct: 68  LDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHC 127

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           +C   +   A+  L +M +    P +VT+  L+       R E A  + D++   GF   
Sbjct: 128 VCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPN 187

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQ 402
             +Y  +I  LCK   ++  V+  +QM      PN  TYNA+   LCE G+  +A ++ +
Sbjct: 188 VVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLR 247

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
            +  ++  P       +I    + G    A ++   M +    PD +TY SL+ G+C  G
Sbjct: 248 DMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG 307

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
           +LDEA ++F ++E N   P+   Y  LI GFCK +R +  ++IF  M  KG V N ITYT
Sbjct: 308 LLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 523 ILVEGLAFENELDIAAGLMKELYMRE 548
           +L++G       D+A  +  ++  R 
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRR 393



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 3/379 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           +Y  +++    + + N +L L  R+      P++  ++ LL    K    D  + L + +
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
              G  P L + N+++  +C   +   A      +   GF P +V++  LL   C+  R 
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           E+A  L  ++      P+VVTY  LI  L  +     A E+ ++M  +G      +YN +
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQN 409
           +  LC+ G+       L  M+ RR  PN  T+ A I    + GK+ EA  ++  +     
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P      ++I+ LC  G    A QM Y M + G  P+   Y++L+ G C+   +++ ++
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMK 349

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           IF  + +   + +   Y  LI G+C   R D++ E+F +M ++   P+  TY +L++GL 
Sbjct: 350 IFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409

Query: 530 FENELDIAAGLMKELYMRE 548
              +++ A  LM   YMR+
Sbjct: 410 CNGKVEKA--LMIFEYMRK 426



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 153/339 (45%), Gaps = 35/339 (10%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ DA    + ++G G KP+V   T L+  LCK+     AV +   +  +G  P+   Y 
Sbjct: 168 RIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYN 227

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT--------------------------- 171
            LV  LC  G  G A  L+  + +   +   +T                           
Sbjct: 228 ALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQM 287

Query: 172 --------YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                   Y +L+ GLC +G L+++ Q+   + + G  PN   Y+ L+ G  K + V++ 
Sbjct: 288 SVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDG 347

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           MK+  ++  +G   N ++Y VL+ G C  GR + A E+F  + ++   P + +YN+LL  
Sbjct: 348 MKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           LC  G+ E+A  +   M + ++  ++VTY I+I  +   G+ E AF++   +   G    
Sbjct: 408 LCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPN 467

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
             +Y  +I+  C+ G +        +M    + PNE  Y
Sbjct: 468 VITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506


>AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4669784-4672826 REVERSE
           LENGTH=806
          Length = 806

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 224/471 (47%), Gaps = 14/471 (2%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   ++ +L DA L L     K   P V     ++   CK      A      ++  G++
Sbjct: 195 DGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLV 254

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P    +  L+N LC  G+I  A++L   + +HG +  +VTYN L KG    G ++ + ++
Sbjct: 255 PSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEV 314

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN-LVSYNVLLTGLC 250
           +  +  KGL P+V TY+ LL G  +   +D  + LL D+++RG E N ++  +V+L+GLC
Sbjct: 315 IRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLC 374

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K GR ++A+ LF  + A G SP +V+Y+I++  LC  G+++ A  L  EM ++ + P+  
Sbjct: 375 KTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSR 434

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T+  L+  L   G   +A  +LD +  SG  +    YN +I    K G ++  ++    +
Sbjct: 435 THGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVV 494

Query: 371 ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           I    +P+  T+N+ I   C+   + EA  I   +      P       ++      GNT
Sbjct: 495 IETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNT 554

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMC------------REGMLDEALEIFRILEEN 477
               ++  EM   G  P + TYS + +G+C            RE + ++  +  R +E  
Sbjct: 555 KSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESE 614

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
              PD   YN +I   C+ +    +    + M ++    +  TY IL++ L
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSL 665



 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 184/361 (50%), Gaps = 2/361 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           TY+T+V GLC   KL  ++  L     K + P+V +++ ++ G  K   VD A      +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  G  P++ S+N+L+ GLC  G   +A+EL  D+   G  P  V+YNIL +     G  
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA-TSYNP 349
             A  ++ +M ++ LSP V+TY IL+      G  +    +L +M   GF + +    + 
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 368

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQ 408
           +++ LCK G++D  +   +QM     SP+   Y+  I  LC+ GK   A +++  + +K+
Sbjct: 369 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P       ++  LC+KG    A  +L  +   G T D   Y+ ++ G  + G ++EAL
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           E+F+++ E    P +  +N+LI G+CK Q    + +I   +   G  P+ ++YT L++  
Sbjct: 489 ELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAY 548

Query: 529 A 529
           A
Sbjct: 549 A 549



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 199/397 (50%), Gaps = 8/397 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ +V+ LCR+  +  A+  +   E        V++N+++ G C  G ++ +      + 
Sbjct: 190 YSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVL 249

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K GL P+V++++ L+ G      + EA++L  D+   G EP+ V+YN+L  G    G   
Sbjct: 250 KCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 309

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS-PSVVTYNIL 315
            A E+ RD+  KG SP V++Y ILL   C  G  +    LL +M        S++  +++
Sbjct: 310 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVM 369

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           ++ L   GR ++A  + ++M   G +    +Y+ +I  LCK GK D+ +   D+M  +R 
Sbjct: 370 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRI 429

Query: 376 SPNEGTYNAIAM-LCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYP 431
            PN  T+ A+ + LC++G + EA  +  SL   G   +  +++    VI    + G    
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNI---VIDGYAKSGCIEE 486

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A ++   + + G TP   T++SL+ G C+   + EA +I  +++     P + +Y  L+ 
Sbjct: 487 ALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 546

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +     T    E+ + M  +G  P  +TY+++ +GL
Sbjct: 547 AYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGL 583



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 201/424 (47%), Gaps = 22/424 (5%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG-----IIPDAACYTHLVNFL 144
           M+ KG  PDV   T LL   C+       + +++ ++  G     IIP +     +++ L
Sbjct: 318 MLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV----MLSGL 373

Query: 145 CRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNV 204
           C+ G I  A+ L  +++  G     V Y+ ++ GLC  GK + +L L D +  K + PN 
Sbjct: 374 CKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNS 433

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
            T+  LL G  ++  + EA  LLD +I+ G   ++V YN+++ G  K G  E+A+ELF+ 
Sbjct: 434 RTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKV 493

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +   G +PSV ++N L+   C      EA  +L  +    L+PSVV+Y  L+ + +  G 
Sbjct: 494 VIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 553

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI---CRR------- 374
           T+   E+  EM   G   T  +Y+ I   LC+  K +     L + I   C++       
Sbjct: 554 TKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMES 613

Query: 375 --YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYP 431
               P++ TYN I     + K     F+F  +   +N        N+ I  LC  G    
Sbjct: 614 EGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRK 673

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A   +Y + +   +   + Y++L++  C +G  + A+++F  L    +   I +Y+A+I 
Sbjct: 674 ADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVIN 733

Query: 492 GFCK 495
             C+
Sbjct: 734 RLCR 737



 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 185/394 (46%), Gaps = 16/394 (4%)

Query: 87  LEYMVGKG-QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           L+ M+ +G +   +   + +L  LCK+ +  +A+ +   +   G+ PD   Y+ +++ LC
Sbjct: 350 LKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLC 409

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
           + G    A+ L +++ +      + T+  L+ GLC  G L ++  LLD L   G   ++ 
Sbjct: 410 KLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV 469

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
            Y+ +++G  K   ++EA++L   +I  G  P++ ++N L+ G CK     +A ++   +
Sbjct: 470 LYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVI 529

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
              G +PSVVSY  L+ +    G  +  + L  EM  E + P+ VTY+++   L    + 
Sbjct: 530 KLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKH 589

Query: 326 EQAFEVLDE------------MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           E    VL E            M   G      +YN II  LC+   +      L+ M  R
Sbjct: 590 ENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSR 649

Query: 374 RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYP 431
               +  TYN  I  LC  G +++A     SL  +QN  +  +    +I   C KG+   
Sbjct: 650 NLDASSATYNILIDSLCVYGYIRKADSFIYSL-QEQNVSLSKFAYTTLIKAHCVKGDPEM 708

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
           A ++ +++   GF      YS+++  +CR  +++
Sbjct: 709 AVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLMN 742



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 23/376 (6%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  R+++A      M   G  PD+   + +++ LCK  K   A+ + + +    I+P++ 
Sbjct: 375 KTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSR 434

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  L+  LC++G +  A  L++ +   G     V YN ++ G    G + ++L+L   +
Sbjct: 435 THGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVV 494

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G+ P+V T++ L+ G  K + + EA K+LD I   G  P++VSY  L+      G T
Sbjct: 495 IETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNT 554

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE------------MDEE 303
           +   EL R++ A+G  P+ V+Y+++ + LC   + E  N +L E            M+ E
Sbjct: 555 KSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESE 614

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG---KV 360
            + P  +TYN +I  L        AF  L+ M     + ++ +YN +I  LC  G   K 
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 674

Query: 361 DLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKN 418
           D  +  L +   +  S ++  Y   I   C +G  + A  +F  L ++  N  + DY   
Sbjct: 675 DSFIYSLQE---QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDY-SA 730

Query: 419 VISMLCRKG--NTYPA 432
           VI+ LCR+   N +P 
Sbjct: 731 VINRLCRRHLMNCFPG 746



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 164/361 (45%), Gaps = 42/361 (11%)

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           ++ SL +L ++  + L  +  +Y+ +L   Y  R  D+   +  +I     + N  +Y+ 
Sbjct: 140 VDDSLYILKKMKDQNLNVSTQSYNSVL---YHFRETDKMWDVYKEI----KDKNEHTYST 192

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           ++ GLC++ + EDA+   R    K   PSVVS+N ++   C  G  + A      + +  
Sbjct: 193 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 252

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           L PSV ++NILI  L L G   +A E+  +M + G    + +YN +       G +    
Sbjct: 253 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAW 312

Query: 365 QCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
           + +  M+ +  SP+  TY    +LC Q                                C
Sbjct: 313 EVIRDMLDKGLSPDVITYTI--LLCGQ--------------------------------C 338

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSS-LVRGMCREGMLDEALEIFRILEENDYMPDI 483
           + GN      +L +M   GF  +S    S ++ G+C+ G +DEAL +F  ++ +   PD+
Sbjct: 339 QLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
             Y+ +I G CK  + D+++ ++  M +K  +PN  T+  L+ GL  +  L  A  L+  
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 544 L 544
           L
Sbjct: 459 L 459



 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 149/350 (42%), Gaps = 42/350 (12%)

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
             +  LL  + + R VD+++ +L  +  +    +  SYN +L    +  +  D  +  +D
Sbjct: 125 LVWDMLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIKD 184

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
                      +Y+ ++  LC + + E+A   L   + +D+ PSVV++N +++     G 
Sbjct: 185 KNEH-------TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGF 237

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            + A      + + G   +  S+N +I  LC  G +   ++    M      P+  TYN 
Sbjct: 238 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 297

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           +A         + F +                          G    A++++ +M   G 
Sbjct: 298 LA---------KGFHLL-------------------------GMISGAWEVIRDMLDKGL 323

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           +PD  TY+ L+ G C+ G +D  L + + +L     +  I   + ++ G CK  R D ++
Sbjct: 324 SPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEAL 383

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
            +F +M   G  P+ + Y+I++ GL    + D+A  L  E+  + +L  S
Sbjct: 384 SLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNS 433


>AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4670178-4672826 REVERSE
           LENGTH=798
          Length = 798

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 224/471 (47%), Gaps = 14/471 (2%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   ++ +L DA L L     K   P V     ++   CK      A      ++  G++
Sbjct: 195 DGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLV 254

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P    +  L+N LC  G+I  A++L   + +HG +  +VTYN L KG    G ++ + ++
Sbjct: 255 PSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEV 314

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN-LVSYNVLLTGLC 250
           +  +  KGL P+V TY+ LL G  +   +D  + LL D+++RG E N ++  +V+L+GLC
Sbjct: 315 IRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLC 374

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K GR ++A+ LF  + A G SP +V+Y+I++  LC  G+++ A  L  EM ++ + P+  
Sbjct: 375 KTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSR 434

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T+  L+  L   G   +A  +LD +  SG  +    YN +I    K G ++  ++    +
Sbjct: 435 THGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVV 494

Query: 371 ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           I    +P+  T+N+ I   C+   + EA  I   +      P       ++      GNT
Sbjct: 495 IETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNT 554

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMC------------REGMLDEALEIFRILEEN 477
               ++  EM   G  P + TYS + +G+C            RE + ++  +  R +E  
Sbjct: 555 KSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESE 614

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
              PD   YN +I   C+ +    +    + M ++    +  TY IL++ L
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSL 665



 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 184/361 (50%), Gaps = 2/361 (0%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           TY+T+V GLC   KL  ++  L     K + P+V +++ ++ G  K   VD A      +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  G  P++ S+N+L+ GLC  G   +A+EL  D+   G  P  V+YNIL +     G  
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA-TSYNP 349
             A  ++ +M ++ LSP V+TY IL+      G  +    +L +M   GF + +    + 
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV 368

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQ 408
           +++ LCK G++D  +   +QM     SP+   Y+  I  LC+ GK   A +++  + +K+
Sbjct: 369 MLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P       ++  LC+KG    A  +L  +   G T D   Y+ ++ G  + G ++EAL
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           E+F+++ E    P +  +N+LI G+CK Q    + +I   +   G  P+ ++YT L++  
Sbjct: 489 ELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAY 548

Query: 529 A 529
           A
Sbjct: 549 A 549



 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 199/397 (50%), Gaps = 8/397 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ +V+ LCR+  +  A+  +   E        V++N+++ G C  G ++ +      + 
Sbjct: 190 YSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVL 249

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K GL P+V++++ L+ G      + EA++L  D+   G EP+ V+YN+L  G    G   
Sbjct: 250 KCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMIS 309

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS-PSVVTYNIL 315
            A E+ RD+  KG SP V++Y ILL   C  G  +    LL +M        S++  +++
Sbjct: 310 GAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVM 369

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           ++ L   GR ++A  + ++M   G +    +Y+ +I  LCK GK D+ +   D+M  +R 
Sbjct: 370 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRI 429

Query: 376 SPNEGTYNAIAM-LCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYP 431
            PN  T+ A+ + LC++G + EA  +  SL   G   +  +++    VI    + G    
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNI---VIDGYAKSGCIEE 486

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A ++   + + G TP   T++SL+ G C+   + EA +I  +++     P + +Y  L+ 
Sbjct: 487 ALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 546

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +     T    E+ + M  +G  P  +TY+++ +GL
Sbjct: 547 AYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGL 583



 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 201/424 (47%), Gaps = 22/424 (5%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG-----IIPDAACYTHLVNFL 144
           M+ KG  PDV   T LL   C+       + +++ ++  G     IIP +     +++ L
Sbjct: 318 MLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSV----MLSGL 373

Query: 145 CRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNV 204
           C+ G I  A+ L  +++  G     V Y+ ++ GLC  GK + +L L D +  K + PN 
Sbjct: 374 CKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNS 433

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
            T+  LL G  ++  + EA  LLD +I+ G   ++V YN+++ G  K G  E+A+ELF+ 
Sbjct: 434 RTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKV 493

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +   G +PSV ++N L+   C      EA  +L  +    L+PSVV+Y  L+ + +  G 
Sbjct: 494 VIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 553

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI---CRR------- 374
           T+   E+  EM   G   T  +Y+ I   LC+  K +     L + I   C++       
Sbjct: 554 TKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMES 613

Query: 375 --YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYP 431
               P++ TYN I     + K     F+F  +   +N        N+ I  LC  G    
Sbjct: 614 EGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRK 673

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A   +Y + +   +   + Y++L++  C +G  + A+++F  L    +   I +Y+A+I 
Sbjct: 674 ADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVIN 733

Query: 492 GFCK 495
             C+
Sbjct: 734 RLCR 737



 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 185/394 (46%), Gaps = 16/394 (4%)

Query: 87  LEYMVGKG-QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           L+ M+ +G +   +   + +L  LCK+ +  +A+ +   +   G+ PD   Y+ +++ LC
Sbjct: 350 LKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLC 409

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
           + G    A+ L +++ +      + T+  L+ GLC  G L ++  LLD L   G   ++ 
Sbjct: 410 KLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV 469

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
            Y+ +++G  K   ++EA++L   +I  G  P++ ++N L+ G CK     +A ++   +
Sbjct: 470 LYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVI 529

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
              G +PSVVSY  L+ +    G  +  + L  EM  E + P+ VTY+++   L    + 
Sbjct: 530 KLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKH 589

Query: 326 EQAFEVLDE------------MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           E    VL E            M   G      +YN II  LC+   +      L+ M  R
Sbjct: 590 ENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSR 649

Query: 374 RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYP 431
               +  TYN  I  LC  G +++A     SL  +QN  +  +    +I   C KG+   
Sbjct: 650 NLDASSATYNILIDSLCVYGYIRKADSFIYSL-QEQNVSLSKFAYTTLIKAHCVKGDPEM 708

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
           A ++ +++   GF      YS+++  +CR  +++
Sbjct: 709 AVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLMN 742



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 23/376 (6%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  R+++A      M   G  PD+   + +++ LCK  K   A+ + + +    I+P++ 
Sbjct: 375 KTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSR 434

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +  L+  LC++G +  A  L++ +   G     V YN ++ G    G + ++L+L   +
Sbjct: 435 THGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVV 494

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G+ P+V T++ L+ G  K + + EA K+LD I   G  P++VSY  L+      G T
Sbjct: 495 IETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNT 554

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE------------MDEE 303
           +   EL R++ A+G  P+ V+Y+++ + LC   + E  N +L E            M+ E
Sbjct: 555 KSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESE 614

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG---KV 360
            + P  +TYN +I  L        AF  L+ M     + ++ +YN +I  LC  G   K 
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 674

Query: 361 DLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKN 418
           D  +  L +   +  S ++  Y   I   C +G  + A  +F  L ++  N  + DY   
Sbjct: 675 DSFIYSLQE---QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDY-SA 730

Query: 419 VISMLCRKG--NTYPA 432
           VI+ LCR+   N +P 
Sbjct: 731 VINRLCRRHLMNCFPG 746



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 164/361 (45%), Gaps = 42/361 (11%)

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           ++ SL +L ++  + L  +  +Y+ +L   Y  R  D+   +  +I     + N  +Y+ 
Sbjct: 140 VDDSLYILKKMKDQNLNVSTQSYNSVL---YHFRETDKMWDVYKEI----KDKNEHTYST 192

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           ++ GLC++ + EDA+   R    K   PSVVS+N ++   C  G  + A      + +  
Sbjct: 193 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 252

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           L PSV ++NILI  L L G   +A E+  +M + G    + +YN +       G +    
Sbjct: 253 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAW 312

Query: 365 QCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
           + +  M+ +  SP+  TY    +LC Q                                C
Sbjct: 313 EVIRDMLDKGLSPDVITYTI--LLCGQ--------------------------------C 338

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSS-LVRGMCREGMLDEALEIFRILEENDYMPDI 483
           + GN      +L +M   GF  +S    S ++ G+C+ G +DEAL +F  ++ +   PD+
Sbjct: 339 QLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
             Y+ +I G CK  + D+++ ++  M +K  +PN  T+  L+ GL  +  L  A  L+  
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 544 L 544
           L
Sbjct: 459 L 459



 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 149/350 (42%), Gaps = 42/350 (12%)

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
             +  LL  + + R VD+++ +L  +  +    +  SYN +L    +  +  D  +  +D
Sbjct: 125 LVWDMLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIKD 184

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
                      +Y+ ++  LC + + E+A   L   + +D+ PSVV++N +++     G 
Sbjct: 185 KNEH-------TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGF 237

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            + A      + + G   +  S+N +I  LC  G +   ++    M      P+  TYN 
Sbjct: 238 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 297

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           +A         + F +                          G    A++++ +M   G 
Sbjct: 298 LA---------KGFHLL-------------------------GMISGAWEVIRDMLDKGL 323

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           +PD  TY+ L+ G C+ G +D  L + + +L     +  I   + ++ G CK  R D ++
Sbjct: 324 SPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEAL 383

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
            +F +M   G  P+ + Y+I++ GL    + D+A  L  E+  + +L  S
Sbjct: 384 SLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNS 433


>AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3190594-3192414 REVERSE
           LENGTH=606
          Length = 606

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 214/437 (48%), Gaps = 39/437 (8%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K        L+  L K N++     V + ++   I P+   +  ++N LC+ G +  A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLC---SHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
             ++E ++ +G     V+YNTL+ G C    +GK+ ++  +L  + +  + PN+ T++ L
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           ++G +K+  +  +MK+  +++ +  +PN++SYN L+ GLC  G+  +AI +   + + G 
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGV 362

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P++++YN L+   C     +EA  +   +  +   P+   YN+LI +    G+ +  F 
Sbjct: 363 QPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFA 422

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
           + +EM R G      +YN +IA LC+ G ++   +  DQ+  +   P+  T++ +     
Sbjct: 423 LKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHIL----- 476

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
                                M  Y        CRKG +  A  +L EM+K G  P   T
Sbjct: 477 ---------------------MEGY--------CRKGESRKAAMLLKEMSKMGLKPRHLT 507

Query: 451 YSSLVRGMCREGMLDEALEIFRILE-ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           Y+ +++G C+EG L  A  +   +E E     ++ +YN L+ G+ +  + + +  +   M
Sbjct: 508 YNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEM 567

Query: 510 VNKGCVPNEITYTILVE 526
           + KG VPN ITY I+ E
Sbjct: 568 LEKGLVPNRITYEIVKE 584



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 5/380 (1%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           ++  + LV    ++ +     +   R    G K +  +   L+    KE    +   +  
Sbjct: 153 SIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYK 212

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY-- 286
           ++I R  +PN+ ++NV++  LCK G+   A ++  D+   G SP+VVSYN L+   C   
Sbjct: 213 EMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG 272

Query: 287 -EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
             G+  +A+ +L EM E D+SP++ T+NILI           + +V  EM          
Sbjct: 273 GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVI 332

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           SYN +I  LC  GK+   +   D+M+     PN  TYNA I   C+   ++EA  +F S+
Sbjct: 333 SYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
             +   P       +I   C+ G     F +  EM + G  PD  TY+ L+ G+CR G +
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
           + A ++F  L     +PD+  ++ L+ G+C+   +  +  + + M   G  P  +TY I+
Sbjct: 453 EAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIV 511

Query: 525 VEGLAFENELDIAAGLMKEL 544
           ++G   E  L  A  +  ++
Sbjct: 512 MKGYCKEGNLKAATNMRTQM 531



 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 201/416 (48%), Gaps = 22/416 (5%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE R  D     + M+ +  +P+V     ++  LCK+ K  KA  VME +   G  P+  
Sbjct: 200 KENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVV 259

Query: 136 CYTHLVNFLCRRGNIGY---AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
            Y  L++  C+ G  G    A  +++++ E+       T+N L+ G      L  S+++ 
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVF 319

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             +  + +KPNV +Y+ L+ G      + EA+ + D +++ G +PNL++YN L+ G CK 
Sbjct: 320 KEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKN 379

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
              ++A+++F  +  +G  P+   YN+L+ + C  G+ ++   L  EM+ E + P V TY
Sbjct: 380 DMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
           N LI  L  +G  E A ++ D++T  G     T ++ ++   C++G+       L +M  
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVT-FHILMEGYCRKGESRKAAMLLKEMSK 498

Query: 373 RRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTY 430
               P   TYN +    C++G ++ A  +   +  ++   M+    NV +    +KG   
Sbjct: 499 MGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
            A  +L EM + G  P+  TY      + +E M+D+            ++PDI+ +
Sbjct: 559 DANMLLNEMLEKGLVPNRITYE-----IVKEEMVDQG-----------FVPDIEGH 598



 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 173/380 (45%), Gaps = 12/380 (3%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLT--KKGLKPNVFTYSFLLEGA-YKERGVDEAMKLLD 228
           Y+ LVK       L  + +LL  L   K+  K   F   F+  G+ ++   +  A+ + D
Sbjct: 88  YSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCD 147

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           ++       N +  ++L+       R E   E F+     G+  S +S   L+ +L  E 
Sbjct: 148 NVCV-----NSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKEN 202

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           R  +   +  EM    + P+V T+N++I +L   G+  +A +V+++M   G +    SYN
Sbjct: 203 RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYN 262

Query: 349 PIIARLCK---EGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
            +I   CK    GK+      L +M+    SPN  T+N  I    +   +  +  +F+ +
Sbjct: 263 TLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM 322

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
            ++   P      ++I+ LC  G    A  M  +M   G  P+  TY++L+ G C+  ML
Sbjct: 323 LDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDML 382

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EAL++F  ++    +P    YN LI  +CK  + D    + + M  +G VP+  TY  L
Sbjct: 383 KEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCL 442

Query: 525 VEGLAFENELDIAAGLMKEL 544
           + GL     ++ A  L  +L
Sbjct: 443 IAGLCRNGNIEAAKKLFDQL 462



 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 37/255 (14%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++++A    + MV  G +P++     L+   CK++  ++A+ +   + G G +P    Y 
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++  C+ G I     L E++E  G      TYN L+ GLC +G +  + +L D+LT K
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK 465

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP--------------------- 237
           GL P++ T+  L+EG  ++    +A  LL ++   G +P                     
Sbjct: 466 GL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAA 524

Query: 238 ---------------NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
                          N+ SYNVLL G  ++G+ EDA  L  ++  KG  P+ ++Y I+  
Sbjct: 525 TNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE 584

Query: 283 SLCYEGRWEEANGLL 297
            +  +G   +  G L
Sbjct: 585 EMVDQGFVPDIEGHL 599



 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 98/187 (52%), Gaps = 2/187 (1%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K  +++D F   E M  +G  PDV     L+  LC++     A ++ + +   G +
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-L 467

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   +  L+   CR+G    A  L++++ + G +   +TYN ++KG C  G L  +  +
Sbjct: 468 PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527

Query: 192 LDRLTK-KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
             ++ K + L+ NV +Y+ LL+G  ++  +++A  LL++++ +G  PN ++Y ++   + 
Sbjct: 528 RTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMV 587

Query: 251 KEGRTED 257
            +G   D
Sbjct: 588 DQGFVPD 594



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 416 CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
           CK ++  L ++  +     +  EM +    P+ +T++ ++  +C+ G +++A ++   ++
Sbjct: 191 CKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMK 250

Query: 476 ENDYMPDIDNYNALILGFCKYQ---RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
                P++ +YN LI G+CK     +   +  + + MV     PN  T+ IL++G   ++
Sbjct: 251 VYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDD 310

Query: 533 ELDIAAGLMKELYMREV 549
            L  +  + KE+  ++V
Sbjct: 311 NLPGSMKVFKEMLDQDV 327


>AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2014440-2015942 REVERSE
           LENGTH=500
          Length = 500

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 219/466 (46%), Gaps = 40/466 (8%)

Query: 69  GKNDQKSK------EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM 122
           G++D + +       ++ NDA      M      P +   ++LL  + K NK    + + 
Sbjct: 43  GRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLF 102

Query: 123 EMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
             +   GI  D   +T L++  CR   +  A+  + K+ + GF+   VT+ +LV G C  
Sbjct: 103 RHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHV 162

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
            +  +++ L+D++   G +PNV  Y+ +++   ++  V+ A+ +L  +   G  P++V+Y
Sbjct: 163 NRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTY 222

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           N L+T L   G    +  +  D+   G SP V++++ L+     EG+  EA     EM +
Sbjct: 223 NSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQ 282

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
             ++P++VTYN LI  L +HG  ++A +VL+ +   GF   A +YN +I   CK  +VD 
Sbjct: 283 RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDD 342

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            ++ L  M       +  TYN +     QG                              
Sbjct: 343 GMKILCVMSRDGVDGDTFTYNTL----YQG------------------------------ 368

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
            C+ G    A ++L  M  CG  PD YT++ L+ G+C  G + +AL     L+++  +  
Sbjct: 369 YCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVG 428

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           I  YN +I G CK  + + +  +F  +  KG  P+ ITY  ++ GL
Sbjct: 429 IITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGL 474



 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 197/400 (49%), Gaps = 5/400 (1%)

Query: 84  FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
           F HLE +   G   D+   T L+   C+  +   A+  +  ++  G  P    +  LVN 
Sbjct: 102 FRHLEML---GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNG 158

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
            C       AM LV+++   G++   V YNT++  LC  G++N +L +L  + K G++P+
Sbjct: 159 FCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPD 218

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           V TY+ L+   +       + ++L D++  G  P++++++ L+    KEG+  +A + + 
Sbjct: 219 VVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYN 278

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           ++  +  +P++V+YN L+  LC  G  +EA  +L  +  +   P+ VTYN LI       
Sbjct: 279 EMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAK 338

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
           R +   ++L  M+R G +    +YN +    C+ GK     + L +M+     P+  T+N
Sbjct: 339 RVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFN 398

Query: 384 AIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
            +   LC+ GK+ +A    + L   +          +I  LC+      A+ +   +   
Sbjct: 399 ILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALK 458

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND-YMP 481
           G +PD  TY +++ G+ R+ +  EA E++R +++ D  MP
Sbjct: 459 GVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498



 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 200/436 (45%), Gaps = 35/436 (8%)

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
           +P    ++ L+  + +       + L   +E  G      ++ TL+   C   +L+ +L 
Sbjct: 76  LPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALS 135

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
            L ++ K G +P++ T+  L+ G        EAM L+D I+  G EPN+V YN ++  LC
Sbjct: 136 CLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLC 195

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           ++G+   A+++ + +   G  P VV+YN L+  L + G W  +  +L++M    +SP V+
Sbjct: 196 EKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVI 255

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T++ LI      G+  +A +  +EM +   N    +YN +I  LC  G +D   + L+ +
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           + + + PN  TYN +                                  I+  C+     
Sbjct: 316 VSKGFFPNAVTYNTL----------------------------------INGYCKAKRVD 341

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
              ++L  M++ G   D++TY++L +G C+ G    A ++   +      PD+  +N L+
Sbjct: 342 DGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILL 401

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
            G C + +   ++   + +     V   ITY I+++GL   ++++ A  L   L ++ V 
Sbjct: 402 DGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGV- 460

Query: 551 SRSTVDRLSMQYDLKE 566
           S   +  ++M   L+ 
Sbjct: 461 SPDVITYITMMIGLRR 476



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 185/388 (47%), Gaps = 37/388 (9%)

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           +  E H   +  V ++ L+  +    K    + L   L   G+  ++++++ L++   + 
Sbjct: 69  DMAESHPLPS-IVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRC 127

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             +  A+  L  ++  G EP++V++  L+ G C   R  +A+ L   +   G+ P+VV Y
Sbjct: 128 ARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIY 187

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N ++ SLC +G+   A  +L  M +  + P VVTYN LIT L   G    +  +L +M R
Sbjct: 188 NTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMR 247

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQE 396
            G +    +++ +I    KEG++    +  ++MI R  +PN  TYN+ I  LC  G + E
Sbjct: 248 MGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDE 307

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A                   K V+++L  KG                F P++ TY++L+ 
Sbjct: 308 A-------------------KKVLNVLVSKG----------------FFPNAVTYNTLIN 332

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G C+   +D+ ++I  ++  +    D   YN L  G+C+  +   + ++  RMV+ G  P
Sbjct: 333 GYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHP 392

Query: 517 NEITYTILVEGLAFENELDIAAGLMKEL 544
           +  T+ IL++GL    ++  A   +++L
Sbjct: 393 DMYTFNILLDGLCDHGKIGKALVRLEDL 420



 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 122/233 (52%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE +L +A      M+ +   P++     L+  LC      +A +V+ ++V  G  
Sbjct: 262 DVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFF 321

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+A  Y  L+N  C+   +   M+++  +   G    T TYNTL +G C  GK + + ++
Sbjct: 322 PNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKV 381

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L R+   G+ P+++T++ LL+G      + +A+  L+D+        +++YN+++ GLCK
Sbjct: 382 LGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCK 441

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
             + EDA  LF  L  KG SP V++Y  ++  L  +  W EA+ L  +M +ED
Sbjct: 442 ADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKED 494


>AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10670320-10672740 REVERSE
           LENGTH=806
          Length = 806

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 193/367 (52%), Gaps = 3/367 (0%)

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           G+L  +L++L  + + G++PN+   +  ++   +   +++A++ L+ +   G  PN+V+Y
Sbjct: 256 GQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTY 315

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM-D 301
           N ++ G C   R E+AIEL  D+ +KG  P  VSY  ++  LC E R  E   L+ +M  
Sbjct: 316 NCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAK 375

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           E  L P  VTYN LI  L+ H   ++A   L +    GF +    Y+ I+  LCKEG++ 
Sbjct: 376 EHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMS 435

Query: 362 LVVQCLDQMICRRYSPNEG-TYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
                +++M+ + + P +  TY A+    C  G+V +A  + Q +    + P       +
Sbjct: 436 EAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTAL 495

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           ++ +CR G +  A +M+    +  ++P+S TYS ++ G+ REG L EA ++ R +    +
Sbjct: 496 LNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGF 555

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAG 539
            P     N L+   C+  RT  + +  +  +NKGC  N + +T ++ G    +ELD A  
Sbjct: 556 FPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALS 615

Query: 540 LMKELYM 546
           ++ ++Y+
Sbjct: 616 VLDDMYL 622



 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 201/410 (49%), Gaps = 5/410 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM-EMIVGSGIIPD 133
           +K    ++A   L+    KG + D    + +++ LCK  +  +A  ++ EM+      PD
Sbjct: 394 TKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPD 453

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
              YT +VN  CR G +  A +L++ +  HG +  TV+Y  L+ G+C  GK  ++ ++++
Sbjct: 454 VVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMN 513

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
              +    PN  TYS ++ G  +E  + EA  ++ +++ +G  P  V  N+LL  LC++G
Sbjct: 514 MSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDG 573

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           RT +A +   +   KG + +VV++  ++   C     + A  +L +M   +    V TY 
Sbjct: 574 RTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYT 633

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            L+ +L   GR  +A E++ +M   G + T  +Y  +I R C+ GKVD +V  L++MI R
Sbjct: 634 TLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISR 693

Query: 374 RYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
           +       YN  I  LC  GK++EA  +   +    +      C  ++    +KG    A
Sbjct: 694 QKC--RTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSA 751

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI-FRILEENDYMP 481
           +++   M      PD      L + +  +G +DEA ++  R++E     P
Sbjct: 752 YKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISP 801



 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 216/449 (48%), Gaps = 3/449 (0%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           ++++    ++ + R A++V+ ++  +G+ P+       ++   R   +  A++ +E+++ 
Sbjct: 246 SRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQV 305

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            G     VTYN +++G C   ++ ++++LL+ +  KG  P+  +Y  ++    KE+ + E
Sbjct: 306 VGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVE 365

Query: 223 AMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
              L+  +    G  P+ V+YN L+  L K    ++A+   +D   KGF    + Y+ ++
Sbjct: 366 VRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIV 425

Query: 282 RSLCYEGRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
            +LC EGR  EA  L+ EM  +    P VVTY  ++      G  ++A ++L  M   G 
Sbjct: 426 HALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH 485

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFF 399
                SY  ++  +C+ GK     + ++      +SPN  TY+ I   L  +GK+ EA  
Sbjct: 486 KPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACD 545

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           + + +  K   P       ++  LCR G T+ A + + E    G   +   +++++ G C
Sbjct: 546 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFC 605

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           +   LD AL +   +   +   D+  Y  L+    K  R   + E+ ++M++KG  P  +
Sbjct: 606 QNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPV 665

Query: 520 TYTILVEGLAFENELDIAAGLMKELYMRE 548
           TY  ++       ++D    +++++  R+
Sbjct: 666 TYRTVIHRYCQMGKVDDLVAILEKMISRQ 694



 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 216/475 (45%), Gaps = 40/475 (8%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVME-MIVGSGIIPDAACY 137
           R+ +A   LE M  KG  PD      ++  LCK  +  +   +M+ M    G++PD   Y
Sbjct: 327 RVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTY 386

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             L++ L +  +   A+  ++  +E GF+   + Y+ +V  LC  G+++++  L++ +  
Sbjct: 387 NTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLS 446

Query: 198 KG-LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK----- 251
           KG   P+V TY+ ++ G  +   VD+A KLL  +   G +PN VSY  LL G+C+     
Sbjct: 447 KGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSL 506

Query: 252 ------------------------------EGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
                                         EG+  +A ++ R++  KGF P  V  N+LL
Sbjct: 507 EAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLL 566

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
           +SLC +GR  EA   + E   +  + +VV +  +I     +   + A  VLD+M     +
Sbjct: 567 QSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKH 626

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFI 400
               +Y  ++  L K+G++    + + +M+ +   P   TY   I   C+ GKV +   I
Sbjct: 627 ADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAI 686

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
            + + ++Q C        VI  LC  G    A  +L ++ +     D+ T  +L+ G  +
Sbjct: 687 LEKMISRQKC--RTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLK 744

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
           +G+   A ++   +   + +PD+     L        + D + ++  R+V +G +
Sbjct: 745 KGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHI 799



 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 223/472 (47%), Gaps = 9/472 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           S+  +L DA   L  M   G +P++      +    ++N+  KA+R +E +   GI+P+ 
Sbjct: 253 SRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNV 312

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  ++   C    +  A++L+E +   G     V+Y T++  LC   ++ +   L+ +
Sbjct: 313 VTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKK 372

Query: 195 LTKK-GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
           + K+ GL P+  TY+ L+    K    DEA+  L D   +G   + + Y+ ++  LCKEG
Sbjct: 373 MAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEG 432

Query: 254 RTEDAIELFRDLPAKGF-SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           R  +A +L  ++ +KG   P VV+Y  ++   C  G  ++A  LL  M      P+ V+Y
Sbjct: 433 RMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSY 492

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
             L+  +   G++ +A E+++      ++  + +Y+ I+  L +EGK+      + +M+ 
Sbjct: 493 TALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVL 552

Query: 373 RRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDY-CKNVISMLCRKGNTY 430
           + + P     N +   LC  G+  EA    +   NK  C ++      VI   C+     
Sbjct: 553 KGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNK-GCAINVVNFTTVIHGFCQNDELD 611

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A  +L +M       D +TY++LV  + ++G + EA E+ + +      P    Y  +I
Sbjct: 612 AALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI 671

Query: 491 LGFCKYQRTDLSIEIFQRMVNK-GCVPNEITYTILVEGLAFENELDIAAGLM 541
             +C+  + D  + I ++M+++  C      Y  ++E L    +L+ A  L+
Sbjct: 672 HRYCQMGKVDDLVAILEKMISRQKC---RTIYNQVIEKLCVLGKLEEADTLL 720



 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 150/310 (48%), Gaps = 3/310 (0%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           +++ ++    + G+  DA+++   +   G  P+++  N  +       R E+A   L  M
Sbjct: 244 AFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 303

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
               + P+VVTYN +I       R E+A E+L++M   G      SY  I+  LCKE ++
Sbjct: 304 QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRI 363

Query: 361 DLVVQCLDQMICRR-YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN 418
             V   + +M       P++ TYN  I ML +     EA +  +    K           
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGF-TPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
           ++  LC++G    A  ++ EM   G   PD  TY+++V G CR G +D+A ++ +++  +
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTH 483

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
            + P+  +Y AL+ G C+  ++  + E+          PN ITY++++ GL  E +L  A
Sbjct: 484 GHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEA 543

Query: 538 AGLMKELYMR 547
             +++E+ ++
Sbjct: 544 CDVVREMVLK 553


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 223/492 (45%), Gaps = 36/492 (7%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           +E M   G  PD      L+    + +  ++A +V E +  +G   D   Y  L++   +
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGK 326

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
                 AM+++ ++  +GF    VTYN+L+      G L+++++L +++ +KG KP+VFT
Sbjct: 327 SHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ LL G  +   V+ AM + +++   G +PN+ ++N  +      G+  + +++F ++ 
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN 446

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             G SP +V++N LL      G   E +G+  EM      P   T+N LI++ S  G  E
Sbjct: 447 VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFE 506

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
           QA  V   M  +G     ++YN ++A L + G  +   + L +M   R  PNE TY ++ 
Sbjct: 507 QAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLL 566

Query: 387 MLCEQGK------------------------------------VQEAFFIFQSLGNKQNC 410
                GK                                    + EA   F  L  +   
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           P      +++S+  R+     A  +L  M + GFTP   TY+SL+    R     ++ EI
Sbjct: 627 PDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
            R +      PDI +YN +I  +C+  R   +  IF  M N G VP+ ITY   +   A 
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746

Query: 531 ENELDIAAGLMK 542
           ++  + A G+++
Sbjct: 747 DSMFEEAIGVVR 758



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 208/427 (48%), Gaps = 6/427 (1%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D +    +++ L + G +  A  +   ++E GF     +Y +L+    + G+  +++ + 
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGV--DEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
            ++ + G KP + TY+ +L   + + G   ++   L++ + + G  P+  +YN L+T  C
Sbjct: 232 KKMEEDGCKPTLITYNVIL-NVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT-CC 289

Query: 251 KEGR-TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
           K G   ++A ++F ++ A GFS   V+YN LL       R +EA  +L EM     SPS+
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSI 349

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
           VTYN LI++ +  G  ++A E+ ++M   G      +Y  +++   + GKV+  +   ++
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409

Query: 370 MICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           M      PN  T+NA I M   +GK  E   IF  +      P       ++++  + G 
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
                 +  EM + GF P+  T+++L+    R G  ++A+ ++R + +    PD+  YN 
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNT 529

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
           ++    +    + S ++   M +  C PNE+TY  L+   A   E+ +   L +E+Y   
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589

Query: 549 VLSRSTV 555
           +  R+ +
Sbjct: 590 IEPRAVL 596



 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 216/495 (43%), Gaps = 38/495 (7%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M   G   D      LL    KS++ ++A++V+  +V +G  P    Y  L++   R
Sbjct: 302 FEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYAR 361

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  AM+L  ++ E G +    TY TL+ G    GK+  ++ + + +   G KPN+ T
Sbjct: 362 DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICT 421

Query: 207 YSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           ++  ++  Y  RG   E MK+ D+I   G  P++V++N LL    + G   +   +F+++
Sbjct: 422 FNAFIK-MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
              GF P   ++N L+ +    G +E+A  +   M +  ++P + TYN ++ +L+  G  
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           EQ+ +VL EM          +Y  ++       ++ L+    +++      P       +
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600

Query: 386 AMLCEQGKV-QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
            ++C +  +  EA   F  L  +   P      +++S+  R+     A  +L  M + GF
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
           TP   TY+SL+    R     ++ EI R +      PDI +YN +I  +C+  R   +  
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASR 720

Query: 505 IFQRMVN-----------------------------------KGCVPNEITYTILVEGLA 529
           IF  M N                                    GC PN+ TY  +V+G  
Sbjct: 721 IFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYC 780

Query: 530 FENELDIAAGLMKEL 544
             N  D A   +++L
Sbjct: 781 KLNRKDEAKLFVEDL 795


>AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:3911388-3913838 FORWARD LENGTH=816
          Length = 816

 Score =  186 bits (471), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 225/455 (49%), Gaps = 8/455 (1%)

Query: 88  EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRR 147
           E  V  G K +    + LL  LCK  K  KA  ++   +  G++P+   Y  +++  CR+
Sbjct: 343 ETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRK 402

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G++  A   +E +E+ G +   + YN L++  C  G++  + + ++++  KG+ P+V TY
Sbjct: 403 GDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETY 462

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           + L+ G  ++   D+   +L ++   G  PN+VSY  L+  LCK  +  +A  + RD+  
Sbjct: 463 NILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMED 522

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           +G SP V  YN+L+   C +G+ E+A     EM ++ +  ++VTYN LI  LS+ G+  +
Sbjct: 523 RGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSE 582

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
           A ++L E++R G      +YN +I+     G V   +   ++M      P   TY+ +  
Sbjct: 583 AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLIS 642

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LC +  ++    +F  +  K +  +++    V+      G+   AF +  +M +     D
Sbjct: 643 LCTKEGIELTERLFGEMSLKPDLLVYN---GVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             TY+SL+ G  + G L E   +   +   +  P+ D YN ++ G C+ +    +   ++
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYR 759

Query: 508 RMVNKG-----CVPNEITYTILVEGLAFENELDIA 537
            M  KG     C+ NE+   +  E  + E E+ I+
Sbjct: 760 EMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVIS 794



 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 216/445 (48%), Gaps = 8/445 (1%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           GI P +   T L++ L +       + +   + E  F+     Y   ++       + + 
Sbjct: 139 GIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKG 198

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           L+L +R+    + P+VF Y+ L++G  K + +++A +L D+++AR   P+L++YN L+ G
Sbjct: 199 LELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDG 258

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
            CK G  E + ++   + A    PS++++N LL+ L   G  E+A  +L EM +    P 
Sbjct: 259 YCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPD 318

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
             T++IL    S + + E A  V +    SG  + A + + ++  LCKEGK++   + L 
Sbjct: 319 AFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILG 378

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
           + + +   PNE  YN  I   C +G +  A    +++  +   P H     +I   C  G
Sbjct: 379 REMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELG 438

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
               A + + +M   G +P   TY+ L+ G  R+   D+  +I + +E+N  MP++ +Y 
Sbjct: 439 EMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYG 498

Query: 488 ALILGFCKYQRTDLSIEIFQR-MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
            LI   CK  +  L  +I +R M ++G  P    Y +L++G   + +++ A    KE+  
Sbjct: 499 TLINCLCKGSKL-LEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557

Query: 547 RE-----VLSRSTVDRLSMQYDLKE 566
           +      V   + +D LSM   L E
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSE 582



 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 200/430 (46%), Gaps = 1/430 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P V     L+  LCK  +   A ++ + ++   ++P    Y  L++  C+ GN   + ++
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            E+++    +   +T+NTL+KGL   G +  +  +L  +   G  P+ FT+S L +G   
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
               + A+ + +  +  G + N  + ++LL  LCKEG+ E A E+     AKG  P+ V 
Sbjct: 332 NEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVI 391

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN ++   C +G    A   +  M+++ + P  + YN LI      G  E A + +++M 
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
             G + +  +YN +I    ++ + D     L +M      PN  +Y   I  LC+  K+ 
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           EA  + + + ++   P       +I   C KG    AF+   EM K G   +  TY++L+
Sbjct: 512 EAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLI 571

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
            G+   G L EA ++   +      PD+  YN+LI G+         I +++ M   G  
Sbjct: 572 DGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK 631

Query: 516 PNEITYTILV 525
           P   TY +L+
Sbjct: 632 PTLKTYHLLI 641



 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 233/486 (47%), Gaps = 14/486 (2%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+NDA    + M+ +   P +     L+   CK+    K+ +V E +    I P    + 
Sbjct: 229 RMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFN 288

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+  L + G +  A  +++++++ GF     T++ L  G  S+ K   +L + +     
Sbjct: 289 TLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDS 348

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+K N +T S LL    KE  +++A ++L   +A+G  PN V YN ++ G C++G    A
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGA 408

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
                 +  +G  P  ++YN L+R  C  G  E A   + +M  + +SPSV TYNILI  
Sbjct: 409 RMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ-MICRRYSP 377
                  ++ F++L EM  +G      SY  +I  LCK  K+ L  Q + + M  R  SP
Sbjct: 469 YGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKL-LEAQIVKRDMEDRGVSP 527

Query: 378 NEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
               YN  I   C +GK+++AF   + +   G + N   ++    +I  L   G    A 
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYN---TLIDGLSMTGKLSEAE 584

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            +L E+++ G  PD +TY+SL+ G    G +   + ++  ++ +   P +  Y+ L++  
Sbjct: 585 DLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH-LLISL 643

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV-LSR 552
           C  +  +L+  +F  M  K   P+ + Y  ++   A   +++ A  L K++  + + L +
Sbjct: 644 CTKEGIELTERLFGEMSLK---PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDK 700

Query: 553 STVDRL 558
           +T + L
Sbjct: 701 TTYNSL 706



 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 208/453 (45%), Gaps = 1/453 (0%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           +G  P     T LL  L K+ + R  + V   I+ S   P    Y   +    +  ++G 
Sbjct: 138 EGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGK 197

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
            ++L  +++          YN L+ GLC   ++N + QL D +  + L P++ TY+ L++
Sbjct: 198 GLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLID 257

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  K    +++ K+ + + A   EP+L+++N LL GL K G  EDA  + +++   GF P
Sbjct: 258 GYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVP 317

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
              +++IL        + E A G+     +  +  +  T +IL+ +L   G+ E+A E+L
Sbjct: 318 DAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEIL 377

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
                 G       YN +I   C++G +      ++ M  +   P+   YN  I   CE 
Sbjct: 378 GREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCEL 437

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G+++ A      +  K   P  +    +I    RK      F +L EM   G  P+  +Y
Sbjct: 438 GEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
            +L+  +C+   L EA  + R +E+    P +  YN LI G C   + + +    + M+ 
Sbjct: 498 GTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK 557

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           KG   N +TY  L++GL+   +L  A  L+ E+
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI 590



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 2/293 (0%)

Query: 244 VLLTGLCKEGR-TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           +LL+ L  E +   +A +LF  L  +G  PS  S  +LL  L    ++     +   + E
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
            D  PS   Y   I +        +  E+ + M       +   YN +I  LCK  +++ 
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232

Query: 363 VVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
             Q  D+M+ RR  P+  TYN  I   C+ G  +++F + + +      P       ++ 
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            L + G    A  +L EM   GF PD++T+S L  G       + AL ++    ++    
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           +    + L+   CK  + + + EI  R + KG VPNE+ Y  +++G   + +L
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDL 405



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 6/258 (2%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++ DAF   + M+ KG + ++     L+  L  + K  +A  ++  I   G+ PD   Y 
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL-TK 197
            L++     GN+   + L E+++  G +    TY+ L+  LC+     + ++L +RL  +
Sbjct: 604 SLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLCT----KEGIELTERLFGE 658

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
             LKP++  Y+ +L        +++A  L   +I +    +  +YN L+ G  K G+  +
Sbjct: 659 MSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCE 718

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
              L  ++ A+   P   +YNI+++  C    +  A     EM E+     V   N L++
Sbjct: 719 VRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVS 778

Query: 318 SLSLHGRTEQAFEVLDEM 335
            L    R+++A  V+ EM
Sbjct: 779 GLKEEWRSKEAEIVISEM 796



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 15/226 (6%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           KG KPDV     L+     +   ++ + + E +  SGI P    Y HL+  LC +  I  
Sbjct: 593 KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTY-HLLISLCTKEGI-- 649

Query: 153 AMQLVEKV-EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
             +L E++  E   +   + YN ++     HG + ++  L  ++ +K +  +  TY+ L+
Sbjct: 650 --ELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLI 707

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
            G  K   + E   L+D++ AR  EP   +YN+++ G C+      A   +R++  KGF 
Sbjct: 708 LGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFL 767

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMD---------EEDLSPS 308
             V   N L+  L  E R +EA  +++EM+         +EDLS +
Sbjct: 768 LDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTVDEDLSAT 813


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 185/368 (50%), Gaps = 1/368 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G +P +     LL   C+ N+ ++AV +++ + G G +P+   Y  ++N LC+  +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+++   +E+ G +   VTYNTL+ GL + G+   + +LL  + K+ + PNV  ++ 
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++   KE  + EA  L  ++I R   PN+ +YN L+ G C  G   DA  +F  + +KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P VV+YN L+   C   R E+   L  EM  + L     TYN LI      G+   A 
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-L 388
           +V + M   G +    +YN ++  LC  GK++  +  ++ +       +  TYN I   L
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C   K++EA+ +F+SL  K   P       +IS LCRKG    A ++   M + GF P  
Sbjct: 440 CRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSE 499

Query: 449 YTYSSLVR 456
             Y   +R
Sbjct: 500 RIYDETLR 507



 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 215/472 (45%), Gaps = 43/472 (9%)

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           ++ +DAF     M+     P +   T++L  + K NK    + +   +   GI  D   +
Sbjct: 58  IKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSF 117

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T L++  CR   +  A+ L+ K+ + GF+   VT  +L+ G C   +  +++ L+D +  
Sbjct: 118 TILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDG 177

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
            G  PNV  Y+ ++ G  K R ++ A+++   +  +G   + V+YN L++GL   GR  D
Sbjct: 178 FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 237

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A  L RD+  +   P+V+ +  L+ +   EG   EA  L  EM    + P+V TYN LI 
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
              +HG    A  + D M   G      +YN +I   CK  +V+                
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE---------------- 341

Query: 378 NEGTYNAIAMLCE---QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
                + + + CE   QG V +AF          N  +H YC+         G    A +
Sbjct: 342 -----DGMKLFCEMTYQGLVGDAF--------TYNTLIHGYCQ--------AGKLNVAQK 380

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +   M  CG +PD  TY+ L+  +C  G +++AL +   L++++   DI  YN +I G C
Sbjct: 381 VFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLC 440

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL---AFENELDIAAGLMKE 543
           +  +   +  +F+ +  KG  P+ I Y  ++ GL     + E D     MKE
Sbjct: 441 RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKE 492



 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 200/390 (51%), Gaps = 3/390 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G   D+   T L++  C+ ++   A+ ++  ++  G  P       L+N  C+      A
Sbjct: 109 GISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEA 168

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + LV+ ++  GF    V YNT++ GLC +  LN +L++   + KKG++ +  TY+ L+ G
Sbjct: 169 VSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG 228

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
                   +A +LL D++ R  +PN++ +  L+    KEG   +A  L++++  +   P+
Sbjct: 229 LSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN 288

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V +YN L+   C  G   +A  +   M  +   P VVTYN LIT      R E   ++  
Sbjct: 289 VFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFC 348

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQG 392
           EMT  G    A +YN +I   C+ GK+++  +  ++M+    SP+  TYN +   LC  G
Sbjct: 349 EMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNG 408

Query: 393 KVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           K+++A  + + L   + +  +  Y   +I  LCR      A+ +   +T+ G  PD+  Y
Sbjct: 409 KIEKALVMVEDLQKSEMDVDIITY-NIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 467

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMP 481
            +++ G+CR+G+  EA ++ R ++E+ +MP
Sbjct: 468 ITMISGLCRKGLQREADKLCRRMKEDGFMP 497



 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 180/381 (47%), Gaps = 1/381 (0%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           V +  ++  +    K +  + L  ++   G+  ++++++ L+    +   +  A+ LL  
Sbjct: 80  VDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGK 139

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           ++  G  P++V+   LL G C+  R ++A+ L   +   GF P+VV YN ++  LC    
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
              A  +   M+++ +    VTYN LI+ LS  GR   A  +L +M +   +     +  
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
           +I    KEG +        +MI R   PN  TYN+ I   C  G + +A ++F  + +K 
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P       +I+  C+        ++  EMT  G   D++TY++L+ G C+ G L+ A 
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           ++F  + +    PDI  YN L+   C   + + ++ + + +       + ITY I+++GL
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439

Query: 529 AFENELDIAAGLMKELYMREV 549
              ++L  A  L + L  + V
Sbjct: 440 CRTDKLKEAWCLFRSLTRKGV 460



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 178/382 (46%), Gaps = 7/382 (1%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           K + +  L   + +    P++  ++ +L    K    D  + L   +   G   +L S+ 
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +L+   C+  R   A+ L   +   GF PS+V+   LL   C   R++EA  L+  MD  
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
              P+VV YN +I  L  +     A EV   M + G    A +YN +I+ L   G+    
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 364 VQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            + L  M+ R+  PN   + A I    ++G + EA  +++ +  +   P      ++I+ 
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLING 298

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
            C  G    A  M   M   G  PD  TY++L+ G C+   +++ +++F  +     + D
Sbjct: 299 FCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
              YN LI G+C+  + +++ ++F RMV+ G  P+ +TY IL++ L    +++      K
Sbjct: 359 AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE------K 412

Query: 543 ELYMREVLSRSTVDRLSMQYDL 564
            L M E L +S +D   + Y++
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNI 434



 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           S   R  DA   L  MV +   P+V   T L+    K     +A  + + ++   ++P+ 
Sbjct: 230 SNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNV 289

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  L+N  C  G +G A  + + +   G     VTYNTL+ G C   ++   ++L   
Sbjct: 290 FTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE 349

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +T +GL  + FTY+ L+ G  +   ++ A K+ + ++  G  P++V+YN+LL  LC  G+
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            E A+ +  DL        +++YNI+++ LC   + +EA  L   +  + + P  + Y  
Sbjct: 410 IEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYIT 469

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           +I+ L   G   +A ++   M   GF  +   Y+
Sbjct: 470 MISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +LN A      MV  G  PD+     LL  LC + K  KA+ ++E +  S +  D   Y 
Sbjct: 374 KLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 433

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++  LCR   +  A  L   +   G +   + Y T++ GLC  G   ++ +L  R+ + 
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 199 GLKPNVFTYSFLLEGAY 215
           G  P+   Y   L   Y
Sbjct: 494 GFMPSERIYDETLRDHY 510


>AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8531226-8533266 FORWARD
           LENGTH=593
          Length = 593

 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 221/471 (46%), Gaps = 44/471 (9%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           + ++ DLC   K   A+ + + ++ SG+IP    + HL+N LC+ G I  A  LV ++ E
Sbjct: 125 SSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMRE 184

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV-- 220
            G     V+YNTL+KGLCS   ++++L L + + K G++PN  T + ++  A  ++GV  
Sbjct: 185 MGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVH-ALCQKGVIG 243

Query: 221 DEAMKLLDDII--ARGGEP-NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           +   KLL++I+  ++   P ++V   +L+    K G    A+E+++++  K      V Y
Sbjct: 244 NNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVY 303

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N+++R LC  G    A G + +M +  ++P V TYN LI++L   G+ ++A ++   M  
Sbjct: 304 NVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQN 363

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEA 397
            G      SY  II  LC  G V+   + L  M+     P    +N              
Sbjct: 364 GGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNV------------- 410

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
                                VI    R G+T  A  +L  M   G  P+ YT ++L+ G
Sbjct: 411 ---------------------VIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHG 449

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPN 517
             + G L +A  +   +      PD   YN L+   C      L+ +++  M+ +GC P+
Sbjct: 450 YVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPD 509

Query: 518 EITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEFT 568
            ITYT LV GL ++  L  A  L+  +    +    T+D +      K++T
Sbjct: 510 IITYTELVRGLCWKGRLKKAESLLSRIQATGI----TIDHVPFLILAKKYT 556



 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 211/445 (47%), Gaps = 12/445 (2%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L+ A    + M+  G  P +     LL  LCK+    KA  ++  +   G  P+   Y 
Sbjct: 136 KLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSYN 195

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKL-NQSLQLLDRL-- 195
            L+  LC   N+  A+ L   + ++G +   VT N +V  LC  G + N + +LL+ +  
Sbjct: 196 TLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILD 255

Query: 196 -TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
            ++     ++   + L++  +K   V +A+++  ++  +    + V YNV++ GLC  G 
Sbjct: 256 SSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLCSSGN 315

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
              A     D+  +G +P V +YN L+ +LC EG+++EA  L   M    ++P  ++Y +
Sbjct: 316 MVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKV 375

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           +I  L +HG   +A E L  M +S        +N +I    + G     +  L+ M+   
Sbjct: 376 IIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYG 435

Query: 375 YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
             PN  T NA I    + G++ +A+++   + + +  P       ++   C  G+   AF
Sbjct: 436 VKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAF 495

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG- 492
           Q+  EM + G  PD  TY+ LVRG+C +G L +A  +   ++       ID+   LIL  
Sbjct: 496 QLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGIT--IDHVPFLILAK 553

Query: 493 -FCKYQRTDLSIEIFQRMV---NKG 513
            + + QR   +  ++++ +   N+G
Sbjct: 554 KYTRLQRPGEAYLVYKKWLATRNRG 578



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 40/274 (14%)

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           D    +  ++ ++  L L G+ + A  +  +M  SG      ++N ++  LCK G ++  
Sbjct: 116 DYDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKA 175

Query: 364 VQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
              + +M     SPN  +YN  I  LC    V +A ++F ++      P    C  ++  
Sbjct: 176 DGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHA 235

Query: 423 LCRK---------------------------------------GNTYPAFQMLYEMTKCG 443
           LC+K                                       GN   A ++  EM++  
Sbjct: 236 LCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKN 295

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
              DS  Y+ ++RG+C  G +  A      + +    PD+  YN LI   CK  + D + 
Sbjct: 296 VPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEAC 355

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
           ++   M N G  P++I+Y ++++GL    +++ A
Sbjct: 356 DLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRA 389



 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A+ V+ +++  G+ P+      L++   + G +  A  +  ++        T TYN L+ 
Sbjct: 424 ALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLG 483

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
             C+ G L  + QL D + ++G +P++ TY+ L+ G   +  + +A  LL  I A G   
Sbjct: 484 AACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQATGITI 543

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPA---KGFS-PSVVSY 277
           + V + +L     +  R  +A  +++   A   +G S PS++++
Sbjct: 544 DHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNRGVSCPSILNH 587


>AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7462820-7465740 FORWARD
           LENGTH=874
          Length = 874

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 225/504 (44%), Gaps = 34/504 (6%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV  G  P       L+  LC S+    A  + + +   G  P+   +  LV   C+ G 
Sbjct: 138 MVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGL 197

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
               ++L+  +E  G     V YNT+V   C  G+ + S ++++++ ++GL P++ T++ 
Sbjct: 198 TDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS 257

Query: 210 LLEGAYKERGVDEAMKLLDDI-------IARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
            +    KE  V +A ++  D+       + R   PN ++YN++L G CK G  EDA  LF
Sbjct: 258 RISALCKEGKVLDASRIFSDMELDEYLGLPR---PNSITYNLMLKGFCKVGLLEDAKTLF 314

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +       S+ SYNI L+ L   G++ EA  +L +M ++ + PS+ +YNIL+  L   
Sbjct: 315 ESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKL 374

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           G    A  ++  M R+G    A +Y  ++   C  GKVD     L +M+     PN  T 
Sbjct: 375 GMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTC 434

Query: 383 NAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
           N +   L + G++ EA  + + +  K        C  ++  LC  G    A +++  M  
Sbjct: 435 NILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV 494

Query: 442 CGFT-----------------------PDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
            G                         PD  TYS+L+ G+C+ G   EA  +F  +    
Sbjct: 495 HGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEK 554

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
             PD   YN  I  FCK  +   +  + + M  KGC  +  TY  L+ GL  +N++    
Sbjct: 555 LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIH 614

Query: 539 GLMKELYMREVLSRSTVDRLSMQY 562
           GLM E+  + +         ++QY
Sbjct: 615 GLMDEMKEKGISPNICTYNTAIQY 638



 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 226/514 (43%), Gaps = 69/514 (13%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG KP+      L+   CK+    K + ++  +   G++P+   Y  +V+  CR G 
Sbjct: 173 MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGR 232

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK---GL-KPNVF 205
              + ++VEK+ E G     VT+N+ +  LC  GK+  + ++   +      GL +PN  
Sbjct: 233 NDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSI 292

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDI------------------IARGGE----------- 236
           TY+ +L+G  K   +++A  L + I                  + R G+           
Sbjct: 293 TYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 237 ------PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
                 P++ SYN+L+ GLCK G   DA  +   +   G  P  V+Y  LL   C  G+ 
Sbjct: 353 TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKV 412

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           + A  LL EM   +  P+  T NIL+ SL   GR  +A E+L +M   G+ +   + N I
Sbjct: 413 DAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNII 472

Query: 351 IARLCKEGKVDLVVQCL-----------------------DQMICRRYSPNEGTYNAIAM 387
           +  LC  G++D  ++ +                       D +I     P+  TY+ +  
Sbjct: 473 VDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLN 532

Query: 388 -LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
            LC+ G+  EA  +F  +  ++  P        I   C++G    AF++L +M K G   
Sbjct: 533 GLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHK 592

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILE---ENDYMPDIDNYNALILGFCKYQRTDLSI 503
              TY+SL+ G+   G+ ++  EI  +++   E    P+I  YN  I   C+ ++ + + 
Sbjct: 593 SLETYNSLILGL---GIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDAT 649

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
            +   M+ K   PN  ++  L+E      + D+A
Sbjct: 650 NLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMA 683



 Score =  168 bits (426), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 173/349 (49%), Gaps = 5/349 (1%)

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
           KP+V+ Y+ LLE   KER V+    L  D++  G  P   ++N+L+  LC     + A E
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           LF ++P KG  P+  ++ IL+R  C  G  ++   LL  M+   + P+ V YN +++S  
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY----S 376
             GR + + +++++M   G      ++N  I+ LCKEGKV    +    M    Y     
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288

Query: 377 PNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           PN  TYN  +   C+ G +++A  +F+S+    +          +  L R G    A  +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           L +MT  G  P  Y+Y+ L+ G+C+ GML +A  I  +++ N   PD   Y  L+ G+C 
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             + D +  + Q M+   C+PN  T  IL+  L     +  A  L++++
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKM 457



 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 235/515 (45%), Gaps = 45/515 (8%)

Query: 67  RVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRV---ME 123
           R G+ND   K V         E M  +G  PD+      +  LCK  K   A R+   ME
Sbjct: 229 REGRNDDSEKMV---------EKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279

Query: 124 MIVGSGII-PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
           +    G+  P++  Y  ++   C+ G +  A  L E + E+       +YN  ++GL  H
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRH 339

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           GK  ++  +L ++T KG+ P++++Y+ L++G  K   + +A  ++  +   G  P+ V+Y
Sbjct: 340 GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTY 399

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
             LL G C  G+ + A  L +++      P+  + NILL SL   GR  EA  LL +M+E
Sbjct: 400 GCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT----------------- 345
           +      VT NI++  L   G  ++A E++  M   G                       
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519

Query: 346 ------SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
                 +Y+ ++  LCK G+         +M+  +  P+   YN  I   C+QGK+  AF
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            + + +  K      +   ++I  L  K   +    ++ EM + G +P+  TY++ ++ +
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYL 639

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
           C    +++A  +   + + +  P++ ++  LI  FCK    D++ E+F+  V+  C   E
Sbjct: 640 CEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSI-CGQKE 698

Query: 519 ITYTILVEGLAFENELDIAAGLMKELYMRE-VLSR 552
             Y+++       NEL  A  L+K   + E VL R
Sbjct: 699 GLYSLMF------NELLAAGQLLKATELLEAVLDR 727



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 226/518 (43%), Gaps = 71/518 (13%)

Query: 95  QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFL----CRRGNI 150
           QK  ++    ++    KSN   KA    +++      P+     +L N L     +   +
Sbjct: 71  QKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSR--FPENKPSVYLYNLLLESCIKERRV 128

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
            +   L + +   G    T T+N L++ LC    ++ + +L D + +KG KPN FT+  L
Sbjct: 129 EFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGIL 188

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           + G  K    D+ ++LL+ + + G  PN V YN +++  C+EGR +D+ ++   +  +G 
Sbjct: 189 VRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGL 248

Query: 271 SPSVV---------------------------------------SYNILLRSLCYEGRWE 291
            P +V                                       +YN++L+  C  G  E
Sbjct: 249 VPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLE 308

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           +A  L   + E D   S+ +YNI +  L  HG+  +A  VL +MT  G   +  SYN ++
Sbjct: 309 DAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILM 368

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNC 410
             LCK G +      +  M      P+  TY  +    C  GKV  A  + Q +  + NC
Sbjct: 369 DGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEM-MRNNC 427

Query: 411 PMHDY-CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
             + Y C  ++  L + G    A ++L +M + G+  D+ T + +V G+C  G LD+A+E
Sbjct: 428 LPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIE 487

Query: 470 IFR-----------------------ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           I +                        L EN+ +PD+  Y+ L+ G CK  R   +  +F
Sbjct: 488 IVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLF 547

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             M+ +   P+ + Y I +     + ++  A  ++K++
Sbjct: 548 AEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDM 585



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 205/453 (45%), Gaps = 35/453 (7%)

Query: 106 LYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGF 165
           L  L +  K  +A  V++ +   GI P    Y  L++ LC+ G +  A  +V  ++ +G 
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV 392

Query: 166 QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMK 225
               VTY  L+ G CS GK++ +  LL  + +    PN +T + LL   +K   + EA +
Sbjct: 393 CPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEE 452

Query: 226 LLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS-------------- 271
           LL  +  +G   + V+ N+++ GLC  G  + AIE+ + +   G +              
Sbjct: 453 LLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512

Query: 272 ---------PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
                    P +++Y+ LL  LC  GR+ EA  L AEM  E L P  V YNI I      
Sbjct: 513 DSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQ 572

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           G+   AF VL +M + G + +  +YN +I  L  + ++  +   +D+M  +  SPN  TY
Sbjct: 573 GKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTY 632

Query: 383 N-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM-- 439
           N AI  LCE  KV++A  +   +  K   P     K +I   C+     P F M  E+  
Sbjct: 633 NTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK----VPDFDMAQEVFE 688

Query: 440 ---TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
              + CG       YS +   +   G L +A E+   + +  +      Y  L+   CK 
Sbjct: 689 TAVSICG--QKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKK 746

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
              +++  I  +M+++G   +      +++GL 
Sbjct: 747 DELEVASGILHKMIDRGYGFDPAALMPVIDGLG 779



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 193/414 (46%), Gaps = 29/414 (7%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+DA   +  M   G  PD      LL+  C   K   A  +++ ++ +  +P+A     
Sbjct: 377 LSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNI 436

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL------- 192
           L++ L + G I  A +L+ K+ E G+   TVT N +V GLC  G+L+++++++       
Sbjct: 437 LLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496

Query: 193 ----------------DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
                           D L +    P++ TYS LL G  K     EA  L  +++    +
Sbjct: 497 SAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQ 556

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           P+ V+YN+ +   CK+G+   A  + +D+  KG   S+ +YN L+  L  + +  E +GL
Sbjct: 557 PDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGL 616

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           + EM E+ +SP++ TYN  I  L    + E A  +LDEM +        S+  +I   CK
Sbjct: 617 MDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK 676

Query: 357 EGKVDLVVQCLDQM--ICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
               D+  +  +    IC +    EG Y+ +   L   G++ +A  + +++ ++      
Sbjct: 677 VPDFDMAQEVFETAVSICGQ---KEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGT 733

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
              K+++  LC+K     A  +L++M   G+  D      ++ G+ + G   EA
Sbjct: 734 FLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEA 787



 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD+   + LL  LCK+ +  +A  +   ++G  + PD+  Y   ++  C++G I  A ++
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           ++ +E+ G      TYN+L+ GL    ++ +   L+D + +KG+ PN+ TY+  ++   +
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              V++A  LLD+++ +   PN+ S+  L+   CK    + A E+F    +       + 
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL- 700

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y+++   L   G+  +A  LL  + +         Y  L+ SL      E A  +L +M 
Sbjct: 701 YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMI 760

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
             G+     +  P+I  L K G         D+M+
Sbjct: 761 DRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMM 795



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%)

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
           +I  LC       A ++  EM + G  P+ +T+  LVRG C+ G+ D+ LE+   +E   
Sbjct: 153 LIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFG 212

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
            +P+   YN ++  FC+  R D S ++ ++M  +G VP+ +T+   +  L  E ++  A+
Sbjct: 213 VLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDAS 272

Query: 539 GLMKELYMREVLSRSTVDRLSMQYDLKEF 567
            +  ++ + E L     + ++    LK F
Sbjct: 273 RIFSDMELDEYLGLPRPNSITYNLMLKGF 301



 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+G+  +PD       ++  CK  K   A RV++ +   G       Y  L+  L  +  
Sbjct: 550 MMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQ 609

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           I     L+++++E G      TYNT ++ LC   K+  +  LLD + +K + PNVF++ +
Sbjct: 610 IFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKY 669

Query: 210 LLEGAYKERGVD----------------------------------EAMKLLDDIIARGG 235
           L+E   K    D                                  +A +LL+ ++ RG 
Sbjct: 670 LIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGF 729

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
           E     Y  L+  LCK+   E A  +   +  +G+     +   ++  L   G  +EAN 
Sbjct: 730 ELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANS 789

Query: 296 LLAEMDE 302
              +M E
Sbjct: 790 FADKMME 796


>AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:4447647-4449200 FORWARD
           LENGTH=517
          Length = 517

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 219/477 (45%), Gaps = 43/477 (9%)

Query: 108 DLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQT 167
           +L KS     AV+V + +  S     +  Y   +  L R      A  +   ++  GF  
Sbjct: 18  NLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSL 77

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
              TY+  + GLC   K +    LL  +   G  P+++ ++  L+   +E  V  A++  
Sbjct: 78  IPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTF 137

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP--------------- 272
             ++ RG EP++VSY +L+ GL + G+  DA+E++  +   G SP               
Sbjct: 138 FCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHA 197

Query: 273 ---------------------SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
                                S V YN L+   C  GR E+A  L + M +    P +VT
Sbjct: 198 RKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVT 257

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN+L+     +   ++A  V+ EM RSG  + A SYN ++ R C+    D   +C + M+
Sbjct: 258 YNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPD---KCYNFMV 314

Query: 372 ----CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
                R +         I   C     ++A+ +F+ +  K          ++I    R+G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREG 374

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
           N+  A ++L +MT+ G +PD   Y++++  +C+ G +D+A  +F  + E++  PD  +YN
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYN 434

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +LI G C+  R   +I++F+ M  K C P+E+T+  ++ GL    +L  A  +  ++
Sbjct: 435 SLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQM 491



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 191/429 (44%), Gaps = 37/429 (8%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           ++ +  LCK  K      ++  +   G IPD   +   ++ LCR   +G+A+Q    + +
Sbjct: 83  SRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQ 142

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            G +   V+Y  L+ GL   GK+  ++++ + + + G+ P+    + L+ G    R VD 
Sbjct: 143 RGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDL 202

Query: 223 AMKLL-DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           A +++ ++I +   + + V YN L++G CK GR E A  L   +   G  P +V+YN+LL
Sbjct: 203 AYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLL 262

Query: 282 RSLCYEGRWEEANGLLAEMDE-------------------------------EDLSP--- 307
                    + A G++AEM                                 +++ P   
Sbjct: 263 NYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGF 322

Query: 308 -SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
             VV+Y+ LI +      T +A+ + +EM + G  +   +Y  +I    +EG   +  + 
Sbjct: 323 CDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKL 382

Query: 367 LDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCR 425
           LDQM     SP+   Y  I   LC+ G V +A+ +F  +   +  P      ++IS LCR
Sbjct: 383 LDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCR 442

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
            G    A ++  +M      PD  T+  ++ G+ R   L  A +++  + +  +  D D 
Sbjct: 443 SGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDV 502

Query: 486 YNALILGFC 494
            + LI   C
Sbjct: 503 SDTLIKASC 511



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 172/406 (42%), Gaps = 70/406 (17%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV +G++PDV   T L+  L ++ K   AV +   ++ SG+ PD      LV  LC    
Sbjct: 140 MVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARK 199

Query: 150 IGYAMQLV-EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS 208
           +  A ++V E+++    +  TV YN L+ G C  G++ ++  L   ++K G +P++ TY+
Sbjct: 200 VDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYN 259

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARG---------------------------------- 234
            LL   Y    +  A  ++ +++  G                                  
Sbjct: 260 VLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEP 319

Query: 235 -GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            G  ++VSY+ L+   C+   T  A  LF ++  KG   +VV+Y  L+++   EG    A
Sbjct: 320 RGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVA 379

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL +M E  LSP  + Y  ++  L   G  ++A+ V ++M        A SYN +I+ 
Sbjct: 380 KKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISG 439

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
           LC+ G+V                                   EA  +F+ +  K+ CP  
Sbjct: 440 LCRSGRV----------------------------------TEAIKLFEDMKGKECCPDE 465

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
              K +I  L R      A+++  +M   GFT D     +L++  C
Sbjct: 466 LTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKASC 511



 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 4/378 (1%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           + Y + +  L   G ++ ++Q+ D +     +   F Y+  +    +E   + A  +  D
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWD 69

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +   G      +Y+  ++GLCK  + +    L  D+   GF P + ++N+ L  LC E +
Sbjct: 70  MKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENK 129

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
              A      M +    P VV+Y ILI  L   G+   A E+ + M RSG +    +   
Sbjct: 130 VGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAA 189

Query: 350 IIARLCKEGKVDLVVQCLDQMI-CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNK 407
           ++  LC   KVDL  + + + I   R   +   YNA I+  C+ G++++A  + +S  +K
Sbjct: 190 LVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEAL-KSYMSK 248

Query: 408 QNCPMHDYCKNVISMLCRKGNTYP-AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
             C       NV+       N    A  ++ EM + G   D+Y+Y+ L++  CR    D+
Sbjct: 249 IGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDK 308

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
                    E     D+ +Y+ LI  FC+   T  +  +F+ M  KG V N +TYT L++
Sbjct: 309 CYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIK 368

Query: 527 GLAFENELDIAAGLMKEL 544
               E    +A  L+ ++
Sbjct: 369 AFLREGNSSVAKKLLDQM 386


>AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=840
          Length = 840

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 214/456 (46%), Gaps = 2/456 (0%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           KG K DV   +  +    KS     A  V + ++  GI P+   YT L+  LC+ G I  
Sbjct: 350 KGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYE 409

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A  +  ++ + G +   VTY++L+ G C  G L     L + + K G  P+V  Y  L++
Sbjct: 410 AFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVD 469

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  K+  +  AM+    ++ +    N+V +N L+ G C+  R ++A+++FR +   G  P
Sbjct: 470 GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            V ++  ++R    EGR EEA  L   M +  L P  + Y  LI +   H +     ++ 
Sbjct: 530 DVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLF 589

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
           D M R+  +      N +I  L K  +++   +  + +I  +  P+  TYN  I   C  
Sbjct: 590 DLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSL 649

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
            ++ EA  IF+ L      P       +I +LC+  +   A +M   M + G  P++ TY
Sbjct: 650 RRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTY 709

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
             L+    +   ++ + ++F  ++E    P I +Y+ +I G CK  R D +  IF + ++
Sbjct: 710 GCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAID 769

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
              +P+ + Y IL+ G      L + A L+ E  +R
Sbjct: 770 AKLLPDVVAYAILIRGYCKVGRL-VEAALLYEHMLR 804



 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 195/422 (46%), Gaps = 3/422 (0%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A R++ +++  G  P+   +  L+N  C+RG +  A  L + +E+ G +   + Y+TL+ 
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
           G    G L    +L  +   KG+K +V  +S  ++   K   +  A  +   ++ +G  P
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISP 389

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+V+Y +L+ GLC++GR  +A  ++  +  +G  PS+V+Y+ L+   C  G       L 
Sbjct: 390 NVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALY 449

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            +M +    P VV Y +L+  LS  G    A     +M      +    +N +I   C+ 
Sbjct: 450 EDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRL 509

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNAIAML-CEQGKVQEAFFIFQSLGNKQNCP-MHDY 415
            + D  ++    M      P+  T+  +  +   +G+++EA F+F  +      P    Y
Sbjct: 510 NRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAY 569

Query: 416 CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
           C  +I   C+        Q+   M +   + D    + ++  + +   +++A + F  L 
Sbjct: 570 C-TLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           E    PDI  YN +I G+C  +R D +  IF+ +      PN +T TIL+  L   N++D
Sbjct: 629 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 688

Query: 536 IA 537
            A
Sbjct: 689 GA 690



 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 201/452 (44%), Gaps = 1/452 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P+V     L+   CK  +  +A  + +++   GI PD   Y+ L++   + G +G  
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMG 340

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            +L  +    G +   V +++ +      G L  +  +  R+  +G+ PNV TY+ L++G
Sbjct: 341 HKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKG 400

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             ++  + EA  +   I+ RG EP++V+Y+ L+ G CK G       L+ D+   G+ P 
Sbjct: 401 LCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           VV Y +L+  L  +G    A     +M  + +  +VV +N LI       R ++A +V  
Sbjct: 461 VVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR 520

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQG 392
            M   G      ++  ++     EG+++  +    +M      P+   Y   I   C+  
Sbjct: 521 LMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHM 580

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           K      +F  +   +       C  VI +L +      A +    + +    PD  TY+
Sbjct: 581 KPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYN 640

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           +++ G C    LDEA  IF +L+   + P+      LI   CK    D +I +F  M  K
Sbjct: 641 TMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEK 700

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           G  PN +TY  L++  +   +++ +  L +E+
Sbjct: 701 GSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM 732



 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 155/316 (49%), Gaps = 1/316 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+G+  + +V     L+   C+ N+  +A++V  ++   GI PD A +T ++      G 
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGR 546

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+ L  ++ + G +   + Y TL+   C H K    LQL D + +  +  ++   + 
Sbjct: 547 LEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNV 606

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           ++   +K   +++A K  +++I    EP++V+YN ++ G C   R ++A  +F  L    
Sbjct: 607 VIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTP 666

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F P+ V+  IL+  LC     + A  + + M E+   P+ VTY  L+   S     E +F
Sbjct: 667 FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSF 726

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           ++ +EM   G + +  SY+ II  LCK G+VD       Q I  +  P+   Y   I   
Sbjct: 727 KLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGY 786

Query: 389 CEQGKVQEAFFIFQSL 404
           C+ G++ EA  +++ +
Sbjct: 787 CKVGRLVEAALLYEHM 802



 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 6/279 (2%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E RL +A      M   G +PD      L+   CK  K    +++ +++  + I  D A 
Sbjct: 544 EGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAV 603

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
              +++ L +   I  A +    + E   +   VTYNT++ G CS  +L+++ ++ + L 
Sbjct: 604 CNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLK 663

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
                PN  T + L+    K   +D A+++   +  +G +PN V+Y  L+    K    E
Sbjct: 664 VTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIE 723

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            + +LF ++  KG SPS+VSY+I++  LC  GR +EA  +  +  +  L P VV Y ILI
Sbjct: 724 GSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783

Query: 317 TSLSLHGRTEQAFEVLDEMTRSG------FNVTATSYNP 349
                 GR  +A  + + M R+G           + YNP
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALSEYNP 822


>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
           chr4:15403020-15406358 FORWARD LENGTH=1112
          Length = 1112

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 223/469 (47%), Gaps = 5/469 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++N+A+  L+ M  +G  PDV   T L+  LC + K   A  V E +      PD   Y 
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYI 332

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++      ++    Q   ++E+ G     VT+  LV  LC  G   ++   LD +  +
Sbjct: 333 TLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ 392

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ PN+ TY+ L+ G  +   +D+A++L  ++ + G +P   +Y V +    K G +  A
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E F  +  KG +P++V+ N  L SL   GR  EA  +   + +  L P  VTYN+++  
Sbjct: 453 LETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKC 512

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
            S  G  ++A ++L EM  +G        N +I  L K  +VD   +   +M   +  P 
Sbjct: 513 YSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPT 572

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI-SMLCRKGNTYPAFQML 436
             TYN  +A L + GK+QEA  +F+ +  K  CP +    N +   LC+      A +ML
Sbjct: 573 VVTYNTLLAGLGKNGKIQEAIELFEGMVQK-GCPPNTITFNTLFDCLCKNDEVTLALKML 631

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
           ++M   G  PD +TY++++ G+ + G + EA+  F  +++  Y PD      L+ G  K 
Sbjct: 632 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLPGVVKA 690

Query: 497 QRTDLSIEIFQRMV-NKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
              + + +I    + N    P  + +  L+  +  E  +D A    + L
Sbjct: 691 SLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERL 739



 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 213/438 (48%), Gaps = 1/438 (0%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L++ L KS    +A+ V   ++  G  P    Y+ L+  L +R +I   M L++++E  G
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG 253

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
            +    T+   ++ L   GK+N++ ++L R+  +G  P+V TY+ L++     R +D A 
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAK 313

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
           ++ + +     +P+ V+Y  LL         +   + + ++   G  P VV++ IL+ +L
Sbjct: 314 EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C  G + EA   L  M ++ + P++ TYN LI  L    R + A E+   M   G   TA
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQS 403
            +Y   I    K G     ++  ++M  +  +PN    NA +  L + G+ +EA  IF  
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
           L +    P       ++    + G    A ++L EM + G  PD    +SL+  + +   
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADR 553

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           +DEA ++F  ++E    P +  YN L+ G  K  +   +IE+F+ MV KGC PN IT+  
Sbjct: 554 VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT 613

Query: 524 LVEGLAFENELDIAAGLM 541
           L + L   +E+ +A  ++
Sbjct: 614 LFDCLCKNDEVTLALKML 631



 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 185/409 (45%), Gaps = 40/409 (9%)

Query: 118  AVRVMEMIVGSGIIPDA-ACYTHLVNFLCRRGNIGYAMQLVEK-VEEHGFQTGTVTYNTL 175
            AV   E +V +GI  D  +    ++ + C+  N+  A  L EK  ++ G Q    TYN L
Sbjct: 732  AVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLL 791

Query: 176  VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
            + GL     +  +  +  ++   G  P+V TY+FLL+   K   +DE  +L  ++     
Sbjct: 792  IGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHEC 851

Query: 236  EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
            E N +++N++++GL K G  +DA++L+ DL                              
Sbjct: 852  EANTITHNIVISGLVKAGNVDDALDLYYDL------------------------------ 881

Query: 296  LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
                M + D SP+  TY  LI  LS  GR  +A ++ + M   G       YN +I    
Sbjct: 882  ----MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937

Query: 356  KEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
            K G+ D       +M+     P+  TY+ +   LC  G+V E    F+ L      P   
Sbjct: 938  KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP-DV 996

Query: 415  YCKN-VISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
             C N +I+ L +      A  +  EM T  G TPD YTY+SL+  +   GM++EA +I+ 
Sbjct: 997  VCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYN 1056

Query: 473  ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
             ++     P++  +NALI G+    + + +  ++Q MV  G  PN  TY
Sbjct: 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 232/534 (43%), Gaps = 78/534 (14%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M  KG  P++      LY L K+ + R+A ++   +   G++PD+  Y  ++    +
Sbjct: 456 FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515

Query: 147 RGNIGYAMQLVEKVEEHG-----------------------------------FQTGTVT 171
            G I  A++L+ ++ E+G                                    +   VT
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YNTL+ GL  +GK+ ++++L + + +KG  PN  T++ L +   K   V  A+K+L  ++
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
             G  P++ +YN ++ GL K G+ ++A+  F  +  K   P  V+   LL  +      E
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIE 694

Query: 292 EANGLL-----------AEMDEEDLSPSVVTYNILITSLSL------------------- 321
           +A  ++           A +  EDL  S++    +  ++S                    
Sbjct: 695 DAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVP 754

Query: 322 -------HGRTEQAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
                  H     A  + ++ T+  G      +YN +I  L +   +++      Q+   
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814

Query: 374 RYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYP 431
              P+  TYN  +    + GK+ E F +++ +   + C  +    N VIS L + GN   
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE-CEANTITHNIVISGLVKAGNVDD 873

Query: 432 AFQMLYE-MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           A  + Y+ M+   F+P + TY  L+ G+ + G L EA ++F  + +    P+   YN LI
Sbjct: 874 ALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILI 933

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            GF K    D +  +F+RMV +G  P+  TY++LV+ L     +D      KEL
Sbjct: 934 NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL 987



 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 219/511 (42%), Gaps = 38/511 (7%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K     +AF  L+ M  +G  P++     L+  L + ++   A+ +   +   G+ 
Sbjct: 371 DALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVK 430

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P A  Y   +++  + G+   A++  EK++  G     V  N  +  L   G+  ++ Q+
Sbjct: 431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQI 490

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              L   GL P+  TY+ +++   K   +DEA+KLL +++  G EP+++  N L+  L K
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
             R ++A ++F  +      P+VV+YN LL  L   G+ +EA  L   M ++   P+ +T
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV----------- 360
           +N L   L  +     A ++L +M   G      +YN II  L K G+V           
Sbjct: 611 FNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670

Query: 361 -----DLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSL----------- 404
                D V  C       + S  E  Y  I         Q A   ++ L           
Sbjct: 671 KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGID 730

Query: 405 ---GNKQNCPMHDYCKNVISML-------CRKGNTYPAFQMLYEMTK-CGFTPDSYTYSS 453
                 +    +  C++  S+L       C+  N   A  +  + TK  G  P   TY+ 
Sbjct: 731 NAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNL 790

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+ G+    M++ A ++F  ++    +PD+  YN L+  + K  + D   E+++ M    
Sbjct: 791 LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE 850

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           C  N IT+ I++ GL     +D A  L  +L
Sbjct: 851 CEANTITHNIVISGLVKAGNVDDALDLYYDL 881



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/534 (23%), Positives = 224/534 (41%), Gaps = 77/534 (14%)

Query: 76   KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
            K  R+++A+     M     KP V     LL  L K+ K ++A+ + E +V  G  P+  
Sbjct: 550  KADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTI 609

Query: 136  CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
             +  L + LC+   +  A++++ K+ + G      TYNT++ GL  +G++ +++    ++
Sbjct: 610  TFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669

Query: 196  TKKGLKPNVFTYSFLLEG---------AYK---------------------------ERG 219
             KK + P+  T   LL G         AYK                           E G
Sbjct: 670  -KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAG 728

Query: 220  VDEAMKLLDDIIARG-------------------------------------GEPNLVSY 242
            +D A+   + ++A G                                      +P L +Y
Sbjct: 729  IDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTY 788

Query: 243  NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
            N+L+ GL +    E A ++F  + + G  P V +YN LL +    G+ +E   L  EM  
Sbjct: 789  NLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMST 848

Query: 303  EDLSPSVVTYNILITSLSLHGRTEQAFEVL-DEMTRSGFNVTATSYNPIIARLCKEGKVD 361
             +   + +T+NI+I+ L   G  + A ++  D M+   F+ TA +Y P+I  L K G++ 
Sbjct: 849  HECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLY 908

Query: 362  LVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
               Q  + M+     PN   YN  I    + G+   A  +F+ +  +   P       ++
Sbjct: 909  EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968

Query: 421  SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN-DY 479
              LC  G          E+ + G  PD   Y+ ++ G+ +   L+EAL +F  ++ +   
Sbjct: 969  DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028

Query: 480  MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
             PD+  YN+LIL        + + +I+  +   G  PN  T+  L+ G +   +
Sbjct: 1029 TPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 3/314 (0%)

Query: 94   GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
            G +P +     L+  L +++    A  V   +  +G IPD A Y  L++   + G I   
Sbjct: 780  GVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDEL 839

Query: 154  MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL-DRLTKKGLKPNVFTYSFLLE 212
             +L +++  H  +  T+T+N ++ GL   G ++ +L L  D ++ +   P   TY  L++
Sbjct: 840  FELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 899

Query: 213  GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
            G  K   + EA +L + ++  G  PN   YN+L+ G  K G  + A  LF+ +  +G  P
Sbjct: 900  GLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 959

Query: 273  SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
             + +Y++L+  LC  GR +E      E+ E  L+P VV YN++I  L    R E+A  + 
Sbjct: 960  DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019

Query: 333  DEM-TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCE 390
            +EM T  G      +YN +I  L   G V+   +  +++      PN  T+NA I     
Sbjct: 1020 NEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1079

Query: 391  QGKVQEAFFIFQSL 404
             GK + A+ ++Q++
Sbjct: 1080 SGKPEHAYAVYQTM 1093



 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 5/306 (1%)

Query: 82   DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
            D FL ++     G  PDVA    LL    KS K  +   + + +       +   +  ++
Sbjct: 806  DVFLQVK---STGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVI 862

Query: 142  NFLCRRGNIGYAMQLV-EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
            + L + GN+  A+ L  + + +  F     TY  L+ GL   G+L ++ QL + +   G 
Sbjct: 863  SGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922

Query: 201  KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            +PN   Y+ L+ G  K    D A  L   ++  G  P+L +Y+VL+  LC  GR ++ + 
Sbjct: 923  RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982

Query: 261  LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD-EEDLSPSVVTYNILITSL 319
             F++L   G +P VV YN+++  L    R EEA  L  EM     ++P + TYN LI +L
Sbjct: 983  YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042

Query: 320  SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
             + G  E+A ++ +E+ R+G      ++N +I      GK +        M+   +SPN 
Sbjct: 1043 GIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNT 1102

Query: 380  GTYNAI 385
            GTY  +
Sbjct: 1103 GTYEQL 1108



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 161/358 (44%), Gaps = 34/358 (9%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T T N +++ L   GKL +   + D + K+ +K +  TY  + +    + G+ +A   L 
Sbjct: 118 TETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALR 177

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +   G   N  SYN L+  L K     +A+E++R +  +GF PS+ +Y+ L+  L    
Sbjct: 178 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRR 237

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
             +   GLL EM+   L P+V T+ I I  L   G+  +A+E+L  M   G      +Y 
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 297

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ 408
            +I  LC   K+D   +  ++M   R+ P+  TY  I +L       + F   + L + +
Sbjct: 298 VLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY--ITLL-------DRFSDNRDLDSVK 348

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
                                    Q   EM K G  PD  T++ LV  +C+ G   EA 
Sbjct: 349 -------------------------QFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           +   ++ +   +P++  YN LI G  +  R D ++E+F  M + G  P   TY + ++
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFID 441



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 76   KEVRLNDAF-LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
            K   ++DA  L+ + M  +   P       L+  L KS +  +A ++ E ++  G  P+ 
Sbjct: 867  KAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNC 926

Query: 135  ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
            A Y  L+N   + G    A  L +++ + G +    TY+ LV  LC  G++++ L     
Sbjct: 927  AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKE 986

Query: 195  LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI-IARGGEPNLVSYNVLLTGLCKEG 253
            L + GL P+V  Y+ ++ G  K   ++EA+ L +++  +RG  P+L +YN L+  L   G
Sbjct: 987  LKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAG 1046

Query: 254  RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
              E+A +++ ++   G  P+V ++N L+R     G+ E A  +   M     SP+  TY 
Sbjct: 1047 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYE 1106

Query: 314  IL 315
             L
Sbjct: 1107 QL 1108



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 1/210 (0%)

Query: 72   DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
            D  SK  RL +A    E M+  G +P+ A    L+    K+ +A  A  + + +V  G+ 
Sbjct: 899  DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958

Query: 132  PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            PD   Y+ LV+ LC  G +   +   ++++E G     V YN ++ GL    +L ++L L
Sbjct: 959  PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVL 1018

Query: 192  LDRL-TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
             + + T +G+ P+++TY+ L+        V+EA K+ ++I   G EPN+ ++N L+ G  
Sbjct: 1019 FNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078

Query: 251  KEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
              G+ E A  +++ +   GFSP+  +Y  L
Sbjct: 1079 LSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108


>AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18097048-18099027 FORWARD
           LENGTH=659
          Length = 659

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 228/488 (46%), Gaps = 19/488 (3%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E R+   ++    M   G +P+V     LL  LCK+NK   A +++  +   G  PDA  
Sbjct: 159 ENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVS 218

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           YT +++ +C  G +    +L E+     F+     YN L+ GLC       + +L+  + 
Sbjct: 219 YTTVISSMCEVGLVKEGRELAER-----FEPVVSVYNALINGLCKEHDYKGAFELMREMV 273

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           +KG+ PNV +YS L+        ++ A   L  ++ RG  PN+ + + L+ G    G T 
Sbjct: 274 EKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF 333

Query: 257 DAIELFRDL-PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           DA++L+  +    G  P+VV+YN L++  C  G   +A  + + M+E   SP++ TY  L
Sbjct: 334 DALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSL 393

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I   +  G  + A  + ++M  SG       Y  ++  LC+  K       ++ M     
Sbjct: 394 INGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENC 453

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAF 433
           +P+  T+NA I  LC+ G++  A  +F+ +  +  CP +    N ++  L +      A+
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            +  E+   G    S TY++L+ G C  G+   AL++   +  +   PD    N +IL +
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573

Query: 494 CKYQRTDLSIEIFQRMV--NKGCVPNEITYTILVEGLAFEN---------ELDIAAGLMK 542
           CK  + + + ++   +    +   P+ I+YT ++ GL   N         E  I+AG++ 
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVP 633

Query: 543 ELYMREVL 550
            +    VL
Sbjct: 634 SIATWSVL 641



 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 197/416 (47%), Gaps = 8/416 (1%)

Query: 115 ARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
           A +AV +   I   G  P    Y H+++ L     I     +   ++  GF+    TYN 
Sbjct: 127 AERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNV 186

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L+K LC + K++ + +LL  ++ KG  P+  +Y+ ++    +   V E  +L     A  
Sbjct: 187 LLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL-----AER 241

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
            EP +  YN L+ GLCKE   + A EL R++  KG SP+V+SY+ L+  LC  G+ E A 
Sbjct: 242 FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAF 301

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS-GFNVTATSYNPIIAR 353
             L +M +    P++ T + L+    L G T  A ++ ++M R  G      +YN ++  
Sbjct: 302 SFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQG 361

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
            C  G +   V     M     SPN  TY + I    ++G +  A +I+  +     CP 
Sbjct: 362 FCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPN 421

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                N++  LCR      A  ++  M+K    P   T+++ ++G+C  G LD A ++FR
Sbjct: 422 VVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 481

Query: 473 ILEENDYM-PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            +E+     P+I  YN L+ G  K  R + +  + + +  +G   +  TY  L+ G
Sbjct: 482 QMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHG 537



 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 188/385 (48%), Gaps = 5/385 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE     AF  +  MV KG  P+V   + L+  LC S +   A   +  ++  G  P+  
Sbjct: 258 KEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIY 317

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEK-VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             + LV     RG    A+ L  + +   G Q   V YNTLV+G CSHG + +++ +   
Sbjct: 318 TLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           + + G  PN+ TY  L+ G  K   +D A+ + + ++  G  PN+V Y  ++  LC+  +
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED-LSPSVVTYN 313
            ++A  L   +  +  +PSV ++N  ++ LC  GR + A  +  +M+++    P++VTYN
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYN 497

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            L+  L+   R E+A+ +  E+   G   ++++YN ++   C  G   + +Q + +M+  
Sbjct: 498 ELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVD 557

Query: 374 RYSPNEGTYNAIAM-LCEQGKVQEAFFIFQ--SLGNKQNCPMHDYCKNVISMLCRKGNTY 430
             SP+E T N I +  C+QGK + A  +    S G ++  P      NVI  LCR     
Sbjct: 558 GKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCRE 617

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLV 455
               +L  M   G  P   T+S L+
Sbjct: 618 DGVILLERMISAGIVPSIATWSVLI 642



 Score =  168 bits (426), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 205/458 (44%), Gaps = 44/458 (9%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++  L   G +     L+++++  GF      + +++      G   +++++  R+ + G
Sbjct: 82  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 141

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
             P+V  Y+ +L+    E  +     +  D+   G EPN+ +YNVLL  LCK  + + A 
Sbjct: 142 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 201

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           +L  ++  KG  P  VSY  ++ S+C  G  +E   L      E   P V  YN LI  L
Sbjct: 202 KLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL-----AERFEPVVSVYNALINGL 256

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN- 378
                 + AFE++ EM   G +    SY+ +I  LC  G+++L    L QM+ R   PN 
Sbjct: 257 CKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNI 316

Query: 379 ------------EGT-----------------------YNAIAM-LCEQGKVQEAFFIFQ 402
                        GT                       YN +    C  G + +A  +F 
Sbjct: 317 YTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFS 376

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
            +      P      ++I+   ++G+   A  +  +M   G  P+   Y+++V  +CR  
Sbjct: 377 HMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHS 436

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG-CVPNEITY 521
              EA  +  I+ + +  P +  +NA I G C   R D + ++F++M  +  C PN +TY
Sbjct: 437 KFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTY 496

Query: 522 TILVEGLAFENELDIAAGLMKELYMREV-LSRSTVDRL 558
             L++GLA  N ++ A GL +E++MR V  S ST + L
Sbjct: 497 NELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTL 534



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +K   L+ A      M+  G  P+V   T ++  LC+ +K ++A  ++E++      P  
Sbjct: 398 AKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSV 457

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
             +   +  LC  G + +A ++  ++E +H      VTYN L+ GL    ++ ++  L  
Sbjct: 458 PTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTR 517

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            +  +G++ +  TY+ LL G+        A++L+  ++  G  P+ ++ N+++   CK+G
Sbjct: 518 EIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQG 577

Query: 254 RTEDAIELFRDLPAKG---FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           + E A ++  DL + G   + P V+SY  ++  LC     E+   LL  M    + PS+ 
Sbjct: 578 KAERAAQML-DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIA 636

Query: 311 TYNILITSLSL 321
           T+++LI    L
Sbjct: 637 TWSVLINCFIL 647



 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 258 AIELFRDLPAKG-FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           A+  F+ +     F  + +++ +++R L  +G+ +    LL +M  +    S   +  +I
Sbjct: 59  ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
           +     G  E+A E+   +   G + +   YN ++  L  E ++ ++      M    + 
Sbjct: 119 SVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFE 178

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           PN  TYN  +  LC+  KV  A  +   + NK  CP       VIS +C  G      ++
Sbjct: 179 PNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL 238

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
                   F P    Y++L+ G+C+E     A E+ R + E    P++ +Y+ LI   C 
Sbjct: 239 AER-----FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCN 293

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
             + +L+     +M+ +GC PN  T + LV+G
Sbjct: 294 SGQIELAFSFLTQMLKRGCHPNIYTLSSLVKG 325


>AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:13844834-13846708 FORWARD
           LENGTH=624
          Length = 624

 Score =  178 bits (452), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 215/436 (49%), Gaps = 15/436 (3%)

Query: 117 KAVRVMEMIVGSGI-IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           + +RV + +V  G+ I + +C   LV    RR  I   +++  ++ + G +    +   +
Sbjct: 172 EGLRVFDYMVKKGLSIDERSCIVFLVAAKKRR-RIDLCLEIFRRMVDSGVKITVYSLTIV 230

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER---GVDEAMKLLDDIIA 232
           V+GLC  G++ +S +L+   + KG+KP  +TY+ ++    K+R   GV+  +K++     
Sbjct: 231 VEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMK---K 287

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            G   N V+Y +L+    K G+  DA +LF ++  +G    V  Y  L+   C +G  + 
Sbjct: 288 DGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKR 347

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
           A  L  E+ E+ LSPS  TY  LI  +   G    A  +++EM   G N+T   +N +I 
Sbjct: 348 AFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLID 407

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA----MLCEQGKVQEAFFIFQSLGNKQ 408
             C++G VD      D M  + +  +  T N IA     L    + ++  F     G K 
Sbjct: 408 GYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKL 467

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           +   +    N+I + C++GN   A ++  EM+  G  P++ TY+ ++   C++G + EA 
Sbjct: 468 STVSY---TNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           ++   +E N   PD   Y +LI G C     D ++ +F  M  KG   N +TYT+++ GL
Sbjct: 525 KLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGL 584

Query: 529 AFENELDIAAGLMKEL 544
           +   + D A GL  E+
Sbjct: 585 SKAGKSDEAFGLYDEM 600



 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 1/440 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            +YMV KG   D       L    K  +    + +   +V SG+       T +V  LCR
Sbjct: 177 FDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCR 236

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
           RG +  + +L+++    G +    TYNT++         +    +L  + K G+  N  T
Sbjct: 237 RGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVT 296

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ L+E + K   + +A KL D++  RG E ++  Y  L++  C++G  + A  LF +L 
Sbjct: 297 YTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELT 356

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            KG SPS  +Y  L+  +C  G    A  L+ EM  + ++ + V +N LI      G  +
Sbjct: 357 EKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVD 416

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAI 385
           +A  + D M + GF     + N I +   +  + D   Q L +M+      +  +Y N I
Sbjct: 417 EASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLI 476

Query: 386 AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
            + C++G V+EA  +F  + +K   P       +I   C++G    A ++   M   G  
Sbjct: 477 DVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMD 536

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
           PDSYTY+SL+ G C    +DEA+ +F  +       +   Y  +I G  K  ++D +  +
Sbjct: 537 PDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGL 596

Query: 506 FQRMVNKGCVPNEITYTILV 525
           +  M  KG   +   YT L+
Sbjct: 597 YDEMKRKGYTIDNKVYTALI 616



 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 159/310 (51%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  +++DA    + M  +G + DV   T L+   C+    ++A  + + +   G+ P + 
Sbjct: 306 KNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSY 365

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L++ +C+ G +G A  L+ +++  G     V +NTL+ G C  G ++++  + D +
Sbjct: 366 TYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVM 425

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +KG + +VFT + +     + +  DEA + L  ++  G + + VSY  L+   CKEG  
Sbjct: 426 EQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNV 485

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           E+A  LF ++ +KG  P+ ++YN+++ + C +G+ +EA  L A M+   + P   TY  L
Sbjct: 486 EEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSL 545

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I    +    ++A  +  EM   G +  + +Y  +I+ L K GK D      D+M  + Y
Sbjct: 546 IHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGY 605

Query: 376 SPNEGTYNAI 385
           + +   Y A+
Sbjct: 606 TIDNKVYTAL 615



 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 174/370 (47%), Gaps = 7/370 (1%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           KG KP+      ++    K         V++++   G++ +   YT L+    + G +  
Sbjct: 253 KGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSD 312

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A +L +++ E G ++    Y +L+   C  G + ++  L D LT+KGL P+ +TY  L++
Sbjct: 313 AEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALID 372

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  K   +  A  L++++ ++G     V +N L+ G C++G  ++A  ++  +  KGF  
Sbjct: 373 GVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQA 432

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            V + N +        R++EA   L  M E  +  S V+Y  LI      G  E+A  + 
Sbjct: 433 DVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLF 492

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
            EM+  G    A +YN +I   CK+GK+    +    M      P+  TY + I   C  
Sbjct: 493 VEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIA 552

Query: 392 GKVQEAFFIFQSLGNK---QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
             V EA  +F  +G K   QN   +     +IS L + G +  AF +  EM + G+T D+
Sbjct: 553 DNVDEAMRLFSEMGLKGLDQNSVTYTV---MISGLSKAGKSDEAFGLYDEMKRKGYTIDN 609

Query: 449 YTYSSLVRGM 458
             Y++L+  M
Sbjct: 610 KVYTALIGSM 619



 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 172/402 (42%), Gaps = 36/402 (8%)

Query: 182 HGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS 241
           +G   + L++ D + KKGL  +  +    L  A K R +D  +++   ++  G +  + S
Sbjct: 167 NGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYS 226

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE-------------- 287
             +++ GLC+ G  E + +L ++   KG  P   +YN ++ +   +              
Sbjct: 227 LTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMK 286

Query: 288 ---------------------GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
                                G+  +A  L  EM E  +   V  Y  LI+     G  +
Sbjct: 287 KDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMK 346

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-I 385
           +AF + DE+T  G + ++ +Y  +I  +CK G++      +++M  +  +  +  +N  I
Sbjct: 347 RAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLI 406

Query: 386 AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
              C +G V EA  I+  +  K        C  + S   R      A Q L+ M + G  
Sbjct: 407 DGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVK 466

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
             + +Y++L+   C+EG ++EA  +F  +      P+   YN +I  +CK  +   + ++
Sbjct: 467 LSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKL 526

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
              M   G  P+  TYT L+ G    + +D A  L  E+ ++
Sbjct: 527 RANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLK 568


>AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8128086-8130242 REVERSE
           LENGTH=718
          Length = 718

 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 207/456 (45%), Gaps = 6/456 (1%)

Query: 84  FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
            L  E M+ KG  P V     +L  L  S    KA  V E ++  GI+P    +  +++ 
Sbjct: 188 LLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDS 247

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
             + G++    ++  +++    +   VTYN L+ G   +GK+ ++ +    + + G    
Sbjct: 248 CFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVT 307

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
            ++++ L+EG  K+   D+A  + D+++  G  P   +YN+ +  LC  GR +DA EL  
Sbjct: 308 PYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLS 367

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
            + A    P VVSYN L+      G++ EA+ L  ++   D+ PS+VTYN LI  L   G
Sbjct: 368 SMAA----PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESG 423

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
             E A  + +EMT         +Y  ++    K G + +  +  D+M+ +   P+   Y 
Sbjct: 424 NLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYT 483

Query: 384 AIAM-LCEQGKVQEAFFIFQSL-GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
             A+     G   +AF + + +     + P        I  LC+ GN   A +   ++ +
Sbjct: 484 TRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFR 543

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
            G  PD  TY++++RG    G    A  ++  +      P +  Y  LI G  K  R + 
Sbjct: 544 VGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQ 603

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
           + +    M  +G  PN +T+  L+ G+     +D A
Sbjct: 604 AFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEA 639



 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 6/335 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R++DA   L  M      PDV     L++   K  K  +A  + + +    I P    Y 
Sbjct: 358 RIDDARELLSSMAA----PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYN 413

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++ LC  GN+  A +L E++         +TY TLVKG   +G L+ + ++ D + +K
Sbjct: 414 TLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRK 473

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE-PNLVSYNVLLTGLCKEGRTED 257
           G+KP+ + Y+    G  +    D+A +L ++++A     P+L  YNV + GLCK G    
Sbjct: 474 GIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVK 533

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           AIE  R +   G  P  V+Y  ++R     G+++ A  L  EM  + L PSV+TY +LI 
Sbjct: 534 AIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIY 593

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
             +  GR EQAF+   EM + G      ++N ++  +CK G +D   + L +M      P
Sbjct: 594 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPP 653

Query: 378 NEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP 411
           N+ +Y   I+  C+  K +E   +++ + +K+  P
Sbjct: 654 NKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEP 688



 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 192/410 (46%), Gaps = 13/410 (3%)

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           EK+   GF       N ++K L     +N++  + + + + G+ P V T++ +L+  +K 
Sbjct: 192 EKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKA 251

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             ++   K+  ++  R  E + V+YN+L+ G  K G+ E+A     D+   GF+ +  S+
Sbjct: 252 GDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSF 311

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N L+   C +G +++A G+  EM    + P+  TYNI I +L   GR + A E+L  M  
Sbjct: 312 NPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAA 371

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQE 396
                   SYN ++    K GK        D +      P+  TYN  I  LCE G ++ 
Sbjct: 372 PD----VVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEG 427

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  + + +  +   P       ++    + GN   A ++  EM + G  PD Y Y++   
Sbjct: 428 AQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAV 487

Query: 457 GMCREGMLDEALEIFRILEE----NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           G  R G  D+A   FR+ EE    + + PD+  YN  I G CK      +IE  +++   
Sbjct: 488 GELRLGDSDKA---FRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRV 544

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQY 562
           G VP+ +TYT ++ G     +  +A  L  E+ +R+ L  S +    + Y
Sbjct: 545 GLVPDHVTYTTVIRGYLENGQFKMARNLYDEM-LRKRLYPSVITYFVLIY 593



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 1/231 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVME-MIVGSGIIPDAACYTHLVNFLCRRG 148
           M+ KG KPD    T       +   + KA R+ E M+      PD   Y   ++ LC+ G
Sbjct: 470 MLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVG 529

Query: 149 NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS 208
           N+  A++   K+   G     VTY T+++G   +G+   +  L D + +K L P+V TY 
Sbjct: 530 NLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYF 589

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
            L+ G  K   +++A +   ++  RG  PN++++N LL G+CK G  ++A      +  +
Sbjct: 590 VLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE 649

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           G  P+  SY +L+   C   +WEE   L  EM ++++ P   T+  L   L
Sbjct: 650 GIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHL 700



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 4/212 (1%)

Query: 77  EVRLND---AF-LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP 132
           E+RL D   AF LH E +      PD+      +  LCK     KA+     I   G++P
Sbjct: 489 ELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVP 548

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D   YT ++      G    A  L +++         +TY  L+ G    G+L Q+ Q  
Sbjct: 549 DHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYS 608

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             + K+G++PNV T++ LL G  K   +DEA + L  +   G  PN  SY +L++  C  
Sbjct: 609 TEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDF 668

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
            + E+ ++L++++  K   P   ++  L + L
Sbjct: 669 EKWEEVVKLYKEMLDKEIEPDGYTHRALFKHL 700



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ K   P V     L+Y   K+ +  +A +    +   G+ P+   +  L+  +C+ GN
Sbjct: 576 MLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGN 635

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           I  A + + K+EE G      +Y  L+   C   K  + ++L   +  K ++P+ +T+  
Sbjct: 636 IDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRA 695

Query: 210 L---LEGAYKERGVDEAMKLL 227
           L   LE  ++ R V+   +LL
Sbjct: 696 LFKHLEKDHESREVEFLERLL 716


>AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7624178-7626058 FORWARD
           LENGTH=626
          Length = 626

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 224/453 (49%), Gaps = 7/453 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G   DV     L+  L  +N+     ++++++  SG+ P+A  Y  L++ LC+ G 
Sbjct: 173 MMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGK 232

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +G A  L+ +++E       VT+N L+   C+  KL QS+ LL++    G  P+V T + 
Sbjct: 233 VGRARSLMSEMKE----PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTK 288

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           ++E    E  V EA+++L+ + ++GG+ ++V+ N L+ G C  G+   A   F ++  KG
Sbjct: 289 VMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKG 348

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           + P+V +YN+L+   C  G  + A     +M  + +  +  T+N LI  LS+ GRT+   
Sbjct: 349 YLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGL 408

Query: 330 EVLDEMTRSG--FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
           ++L+ M  S          YN +I    KE + +  ++ L +M        + ++  I+ 
Sbjct: 409 KILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLIS- 467

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LCE+G + +    +  +  +   P       +I    + G    + +++ +M   G+ P 
Sbjct: 468 LCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVTRGYLPR 527

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
           S T+++++ G C++  +   ++    + E   +PD ++YN L+   C       +  +F 
Sbjct: 528 SSTFNAVIIGFCKQDKVMNGIKFVEDMAERGCVPDTESYNPLLEELCVKGDIQKAWLLFS 587

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
           RMV K  VP+   ++ L+  L+ +  + + + L
Sbjct: 588 RMVEKSIVPDPSMWSSLMFCLSQKTAIHVNSSL 620



 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 9/340 (2%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E +L  + + LE     G  PDV   T+++  LC   +  +A+ V+E +   G   D   
Sbjct: 261 EQKLIQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVA 320

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
              LV   C  G +  A +   ++E  G+     TYN L+ G C  G L+ +L   + + 
Sbjct: 321 CNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMK 380

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLL----DDIIARGGEPNLVSYNVLLTGLCKE 252
              ++ N  T++ L+ G       D+ +K+L    D     G   +   YN ++ G  KE
Sbjct: 381 TDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARID--PYNCVIYGFYKE 438

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
            R EDA+E    L  +   P  V  +  L SLC +G  ++      +M  E   PS++  
Sbjct: 439 NRWEDALEFL--LKMEKLFPRAVDRSFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVS 496

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
           + LI   S HG+ E++ E++++M   G+   ++++N +I   CK+ KV   ++ ++ M  
Sbjct: 497 HCLIHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIKFVEDMAE 556

Query: 373 RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP 411
           R   P+  +YN  +  LC +G +Q+A+ +F  +  K   P
Sbjct: 557 RGCVPDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVP 596



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 193/434 (44%), Gaps = 48/434 (11%)

Query: 129 GIIPDAACYTHLVNFLC--RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN 186
           G I   + Y  L + LC  RR +  Y + L E  +  G       + T+++G      + 
Sbjct: 71  GFIHSRSTYRALFHKLCVFRRFDTVYQL-LDEMPDSIGLPPDDAIFVTIIRGFGRARLIK 129

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD-DIIARGGEPNLVSYNVL 245
           + + ++D ++K G+KP++  ++ +L+   KE  +D A +     ++A G   ++ +Y +L
Sbjct: 130 RVISVVDLVSKFGIKPSLKVFNSILDVLVKE-DIDIAREFFTRKMMASGIHGDVYTYGIL 188

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL 305
           + GL    R  D  +L + +   G +P+ V YN LL +LC  G+   A  L++EM E   
Sbjct: 189 MKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEMKE--- 245

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
            P+ VT+NILI++     +  Q+  +L++    GF     +   ++  LC EG+V   ++
Sbjct: 246 -PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALE 304

Query: 366 CLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCR 425
            L+     R     G  + +A                             C  ++   C 
Sbjct: 305 VLE-----RVESKGGKVDVVA-----------------------------CNTLVKGYCA 330

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
            G    A +   EM + G+ P+  TY+ L+ G C  GMLD AL+ F  ++ +    +   
Sbjct: 331 LGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFAT 390

Query: 486 YNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT--YTILVEGLAFENELDIAAGLMKE 543
           +N LI G     RTD  ++I + M +   V       Y  ++ G   EN  + A   +  
Sbjct: 391 FNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFL-- 448

Query: 544 LYMREVLSRSTVDR 557
           L M ++  R+ VDR
Sbjct: 449 LKMEKLFPRA-VDR 461


>AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:890428-892410 REVERSE
           LENGTH=660
          Length = 660

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/523 (24%), Positives = 237/523 (45%), Gaps = 52/523 (9%)

Query: 29  SQVLNLRTFSLN-----KGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDA 83
           SQ+LNL   S +      GF R      I +SP    F L          KS E+R    
Sbjct: 87  SQILNLLDGSASMESNLDGFCRKFL---IKLSPNFVSFVL----------KSDEIR---- 129

Query: 84  FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
                      +KPD+A +       C S K +K    +E            CY  LV+ 
Sbjct: 130 -----------EKPDIAWSF-----FCWSRKQKKYTHNLE------------CYVSLVDV 161

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
           L    ++     +  ++++  F       N L+K     G + + L +  ++ + G++P 
Sbjct: 162 LALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPT 221

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           ++TY+FL+ G      VD A ++ + + +   +P++V+YN ++ G CK G+T+ A+E  R
Sbjct: 222 LYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLR 281

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           D+  +G     ++Y  ++++   +  +     L  EMDE+ +      ++++I  L   G
Sbjct: 282 DMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEG 341

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
           +  + + V + M R G       Y  +I    K G V+  ++ L +MI   + P+  TY+
Sbjct: 342 KLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYS 401

Query: 384 AIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
            +   LC+ G+V+EA   F +           +  ++I  L + G    A ++  EM++ 
Sbjct: 402 VVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 461

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD-IDNYNALILGFCKYQRTDL 501
           G T DSY Y++L+    +   +DEA+ +F+ +EE +     +  Y  L+ G  K  R + 
Sbjct: 462 GCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEE 521

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +++++  M++KG  P    +  L  GL    ++  A  ++ EL
Sbjct: 522 ALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDEL 564



 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 192/386 (49%), Gaps = 3/386 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M     KPD+     ++   CK+ + +KA+  +  +   G   D   Y  ++     
Sbjct: 245 FEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYA 304

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
             + G  + L ++++E G Q     ++ ++ GLC  GKLN+   + + + +KG KPNV  
Sbjct: 305 DSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAI 364

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ L++G  K   V++A++LL  +I  G +P++V+Y+V++ GLCK GR E+A++ F    
Sbjct: 365 YTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR 424

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             G + + + Y+ L+  L   GR +EA  L  EM E+  +     YN LI + + H + +
Sbjct: 425 FDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVD 484

Query: 327 QAFEVLDEM-TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           +A  +   M    G + T  +Y  +++ + KE + +  ++  D MI +  +P    + A+
Sbjct: 485 EAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRAL 544

Query: 386 AM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           +  LC  GKV  A  I   L       +   C+++I+ LC+ G    A ++   +T+ G 
Sbjct: 545 STGLCLSGKVARACKILDELA-PMGVILDAACEDMINTLCKAGRIKEACKLADGITERGR 603

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEI 470
                  + ++  + + G  D A+++
Sbjct: 604 EVPGRIRTVMINALRKVGKADLAMKL 629



 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 207/446 (46%), Gaps = 5/446 (1%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           V+ A  L+    K     + + V   +  +GI P    Y  L+N L     +  A ++ E
Sbjct: 187 VSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFE 246

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
            +E    +   VTYNT++KG C  G+  ++++ L  +  +G + +  TY  +++  Y + 
Sbjct: 247 VMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADS 306

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
                + L  ++  +G +    ++++++ GLCKEG+  +   +F ++  KG  P+V  Y 
Sbjct: 307 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYT 366

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
           +L+      G  E+A  LL  M +E   P VVTY++++  L  +GR E+A +        
Sbjct: 367 VLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD 426

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G  + +  Y+ +I  L K G+VD   +  ++M  +  + +   YNA I    +  KV EA
Sbjct: 427 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEA 486

Query: 398 FFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
             +F+ +  ++ C    Y   + +S + ++     A ++   M   G TP +  + +L  
Sbjct: 487 IALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALST 546

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC-V 515
           G+C  G +  A +I   L     + D    + +I   CK  R   + ++   +  +G  V
Sbjct: 547 GLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERGREV 605

Query: 516 PNEITYTILVEGLAFENELDIAAGLM 541
           P  I  T+++  L    + D+A  LM
Sbjct: 606 PGRIR-TVMINALRKVGKADLAMKLM 630



 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 201/449 (44%), Gaps = 18/449 (4%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G +P +     L+  L  +     A RV E++    I PD   Y  ++   C+ G 
Sbjct: 213 MKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQ 272

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              AM+ +  +E  G +   +TY T+++   +       + L   + +KG++     +S 
Sbjct: 273 TQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSL 332

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           ++ G  KE  ++E   + +++I +G +PN+  Y VL+ G  K G  EDAI L   +  +G
Sbjct: 333 VIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F P VV+Y++++  LC  GR EEA         + L+ + + Y+ LI  L   GR ++A 
Sbjct: 393 FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAE 452

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG------TYN 383
            + +EM+  G    +  YN +I    K  KVD  +      + +R    EG      TY 
Sbjct: 453 RLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIA-----LFKRMEEEEGCDQTVYTYT 507

Query: 384 A-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC 442
             ++ + ++ + +EA  ++  + +K   P     + + + LC  G    A ++L E+   
Sbjct: 508 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 567

Query: 443 GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLS 502
           G   D+     ++  +C+ G + EA ++   + E            +I    K  + DL+
Sbjct: 568 GVILDA-ACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 626

Query: 503 IEIFQRMVN-----KGCVPNEITYTILVE 526
           +++    +       G V   + +T L+E
Sbjct: 627 MKLMHSKIGIGYERMGSVKRRVKFTTLLE 655



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE R  +A    + M+ KG  P  A    L   LC S K  +A ++++ +   G+I DAA
Sbjct: 515 KEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA 574

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           C   ++N LC+ G I  A +L + + E G +        ++  L   GK + +++L+
Sbjct: 575 C-EDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLM 630


>AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:23195609-23198524 REVERSE
           LENGTH=971
          Length = 971

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 250/538 (46%), Gaps = 59/538 (10%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D  SKE  + +A   L  M+ +G +P++   T ++  LCK  K  +A  +   I+  GI 
Sbjct: 285 DGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIE 344

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D   Y  L++ +CR+GN+  A  ++  +E+ G Q   +TYNT++ GLC  G+++++ ++
Sbjct: 345 VDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV 404

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
                 KG+  +V TYS LL+   K + +D  +++    +      +LV  N+LL     
Sbjct: 405 -----SKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLL 459

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
            G   +A  L+R +P    +P   +Y  +++  C  G+ EEA  +  E+ +  +S + V 
Sbjct: 460 MGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAA-VC 518

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGF----NVTATSYNPIIARLCKEGKVDLV--VQ 365
           YN +I +L   G  + A EVL E+   G     + + T  + I A    +G + LV  ++
Sbjct: 519 YNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLE 578

Query: 366 CLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNK----------------- 407
            L+  +C       G  N AI +LC++G  + A  ++  +  K                 
Sbjct: 579 QLNSDVCL------GMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDN 632

Query: 408 ------------------QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
                              +  + DY   +I+ LC++G    A  +       G T ++ 
Sbjct: 633 LRSLDAYLLVVNAGETTLSSMDVIDYTI-IINGLCKEGFLVKALNLCSFAKSRGVTLNTI 691

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY+SL+ G+C++G L EAL +F  LE    +P    Y  LI   CK      + ++   M
Sbjct: 692 TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSM 751

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEF 567
           V+KG VPN I Y  +V+G     + + A  ++     R+++ R T D  ++   +K +
Sbjct: 752 VSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVS----RKMMGRVTPDAFTVSSMIKGY 805



 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 217/463 (46%), Gaps = 48/463 (10%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGI-IPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           + ++   CK  K   A+   E  V SG+ +P+   YT LV+ LC+ G +     LV ++E
Sbjct: 175 SAVISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLE 234

Query: 162 EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
           + GF+   V Y+  + G    G L  +L     + +KG+  +V +YS L++G  KE  V+
Sbjct: 235 DEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVE 294

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           EA+ LL  +I  G EPNL++Y  ++ GLCK G+ E+A  LF  + + G       Y  L+
Sbjct: 295 EALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLI 354

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
             +C +G    A  +L +M++  + PS++TYN +I  L + GR  +A    DE+++ G  
Sbjct: 355 DGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEA----DEVSK-GVV 409

Query: 342 VTATSYNPIIARLCKEGKVDLVVQC----------LDQMICR------------------ 373
               +Y+ ++    K   +D V++           +D ++C                   
Sbjct: 410 GDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADAL 469

Query: 374 -------RYSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLC 424
                    +P+  TY   I   C+ G+++EA  +F  L  +++      C N +I  LC
Sbjct: 470 YRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNEL--RKSSVSAAVCYNRIIDALC 527

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
           +KG    A ++L E+ + G   D +T  +L+  +   G     L +   LE+ +    + 
Sbjct: 528 KKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLG 587

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCV---PNEITYTIL 524
             N  IL  CK    + +IE++  M  KG     P+ I  T++
Sbjct: 588 MLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLV 630



 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 40/342 (11%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D   YT ++N LC+ G +  A+ L    +  G    T+TYN+L+ GLC  G L ++L+L 
Sbjct: 654 DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 713

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           D L   GL P+  TY  L++   KE    +A KLLD ++++G  PN++ YN ++ G CK 
Sbjct: 714 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 773

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G+TEDA+ +         +P   + + +++  C +G  EEA  +  E  ++++S     +
Sbjct: 774 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 833

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
             LI      GR E+A  +L EM      + + S   +I R+  E               
Sbjct: 834 LFLIKGFCTKGRMEEARGLLREM------LVSESVVKLINRVDAE--------------- 872

Query: 373 RRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
              + +E     +  LCEQG+V +A  I   + +     ++   KN+         +Y  
Sbjct: 873 --LAESESIRGFLVELCEQGRVPQAIKILDEISS----TIYPSGKNL--------GSYQR 918

Query: 433 FQML-----YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            Q L      E+ K  +  D ++  S V  +C  G L++A E
Sbjct: 919 LQFLNDVNEEEIKKKDYVHDFHSLHSTVSSLCTSGKLEQANE 960



 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 159/349 (45%), Gaps = 38/349 (10%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           DV   T ++  LCK     KA+ +       G+  +   Y  L+N LC++G +  A++L 
Sbjct: 654 DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 713

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           + +E  G     VTY  L+  LC  G    + +LLD +  KGL PN+  Y+ +++G  K 
Sbjct: 714 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 773

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
              ++AM+++   +     P+  + + ++ G CK+G  E+A+ +F +   K  S     +
Sbjct: 774 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 833

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L++  C +GR EEA GLL EM    +S SVV          L  R +   E+ +  + 
Sbjct: 834 LFLIKGFCTKGRMEEARGLLREM---LVSESVV---------KLINRVDA--ELAESESI 879

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY--SPNEGTYNAIAMLCEQGKVQ 395
            GF          +  LC++G+V   ++ LD++    Y    N G+Y  +  L +  + +
Sbjct: 880 RGF----------LVELCEQGRVPQAIKILDEISSTIYPSGKNLGSYQRLQFLNDVNEEE 929

Query: 396 EAFFIFQSLGNKQNCPMHDY--CKNVISMLCRKGNTYPAFQMLYEMTKC 442
                      K+   +HD+    + +S LC  G    A + +  +  C
Sbjct: 930 ----------IKKKDYVHDFHSLHSTVSSLCTSGKLEQANEFVMSVLSC 968



 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 19/371 (5%)

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L  L K G  P + +    L   Y+ +  +  ++    + ++    N   Y+++      
Sbjct: 14  LQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSWAFLN 73

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE---GRWEEANGLLAEMD---EEDL 305
             R EDA +      +K    S+     +L SL +     R + + GLL   D       
Sbjct: 74  LNRYEDAEKFINIHISKA---SIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGA 130

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY--NPIIARLCKEGKVDLV 363
            PS +T+  LI      G  + A EVL+ MT    N    ++  + +I+  CK GK +L 
Sbjct: 131 FPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELA 190

Query: 364 VQCLDQMI-CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKN 418
           +   +  +      PN  TY   ++ LC+ GKV E   + + L   G + +C  +    N
Sbjct: 191 LGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFY---SN 247

Query: 419 VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND 478
            I    + G    A     EM + G   D  +YS L+ G+ +EG ++EAL +   + +  
Sbjct: 248 WIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEG 307

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
             P++  Y A+I G CK  + + +  +F R+++ G   +E  Y  L++G+  +  L+ A 
Sbjct: 308 VEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAF 367

Query: 539 GLMKELYMREV 549
            ++ ++  R +
Sbjct: 368 SMLGDMEQRGI 378



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 32/241 (13%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   KE    DA   L+ MV KG  P++     ++   CK  +   A+RV+   +   + 
Sbjct: 733 DNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVT 792

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS--- 188
           PDA   + ++   C++G++  A+ +  + ++         +  L+KG C+ G++ ++   
Sbjct: 793 PDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGL 852

Query: 189 ----------LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI---IARGG 235
                     ++L++R+  + L  +     FL+E   + R V +A+K+LD+I   I   G
Sbjct: 853 LREMLVSESVVKLINRVDAE-LAESESIRGFLVELCEQGR-VPQAIKILDEISSTIYPSG 910

Query: 236 EPNLVSYNVL--LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           + NL SY  L  L  + +E           ++  K +     S +  + SLC  G+ E+A
Sbjct: 911 K-NLGSYQRLQFLNDVNEE-----------EIKKKDYVHDFHSLHSTVSSLCTSGKLEQA 958

Query: 294 N 294
           N
Sbjct: 959 N 959


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 5/326 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV  G +PDV   T L+  LC   +  +A+ +++ +V  G  P    Y  ++N LC+ G+
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A+ L+ K+EE   +   V YN ++  LC  G    +  L   +  KG+ P+V TYS 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +++   +     +A +LL D+I R   P++V+++ L+  L KEG+  +A E++ D+  +G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ ++YN ++   C + R  +A  +L  M  +  SP VVT++ LI       R +   
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           E+  EM R G      +Y  +I   C+ G +D     L+ MI    +PN  T+ + +A L
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHD 414
           C + ++++AF I + L   +   + D
Sbjct: 297 CSKKELRKAFAILEDLQKSEGHHLED 322



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 154/320 (48%), Gaps = 5/320 (1%)

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           ++  G  P++V++  L+ GLC EGR   A+ L   +  +G  P    Y  ++  LC  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            E A  LL++M+E  +   VV YN +I  L   G    A  +  EM   G      +Y+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
           +I   C+ G+     Q L  MI R+ +P+  T++A I  L ++GKV EA  I+  +  + 
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P      ++I   C++     A +ML  M     +PD  T+S+L+ G C+   +D  +
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           EIF  +     + +   Y  LI GFC+    D + ++   M++ G  PN IT+  ++  L
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 529 AFENELDIAAGLMKELYMRE 548
             + EL  A  ++++L   E
Sbjct: 297 CSKKELRKAFAILEDLQKSE 316



 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 38/285 (13%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G  P VV++  L+  LC EGR  +A  L+  M EE   P    Y  +I  L   G TE A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
             +L +M  +        YN II RLCK+G          +M  +   P+  TY+ +   
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM--- 117

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
                                          I   CR G    A Q+L +M +    PD 
Sbjct: 118 -------------------------------IDSFCRSGRWTDAEQLLRDMIERQINPDV 146

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
            T+S+L+  + +EG + EA EI+  +      P    YN++I GFCK  R + +  +   
Sbjct: 147 VTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDS 206

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
           M +K C P+ +T++ L+ G      +D    +  E++ R +++ +
Sbjct: 207 MASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 251



 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 93/197 (47%)

Query: 69  GKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           G  D   +  R  DA   L  M+ +   PDV   + L+  L K  K  +A  +   ++  
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           GI P    Y  +++  C++  +  A ++++ +         VT++TL+ G C   +++  
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNG 235

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           +++   + ++G+  N  TY+ L+ G  +   +D A  LL+ +I+ G  PN +++  +L  
Sbjct: 236 MEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLAS 295

Query: 249 LCKEGRTEDAIELFRDL 265
           LC +     A  +  DL
Sbjct: 296 LCSKKELRKAFAILEDL 312



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+ RLNDA   L+ M  K   PDV   + L+   CK+ +    + +   +   GI+
Sbjct: 189 DGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIV 248

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            +   YT L++  C+ G++  A  L+  +   G     +T+ +++  LCS  +L ++  +
Sbjct: 249 ANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAI 308

Query: 192 LDRLTK 197
           L+ L K
Sbjct: 309 LEDLQK 314


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 208/436 (47%), Gaps = 8/436 (1%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P       LL+   K  K     R  + ++G+G  P    Y  +++ +C+ G++  A  L
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 284

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            E+++  G    TVTYN+++ G    G+L+ ++   + +     +P+V TY+ L+    K
Sbjct: 285 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              +   ++   ++   G +PN+VSY+ L+   CKEG  + AI+ + D+   G  P+  +
Sbjct: 345 FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y  L+ + C  G   +A  L  EM +  +  +VVTY  LI  L    R ++A E+  +M 
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 464

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
            +G      SYN +I    K   +D  ++ L+++  R   P+   Y   I  LC   K++
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIE 524

Query: 396 EAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
            A  +   +   G K N  ++     ++    + GN      +L EM +        T+ 
Sbjct: 525 AAKVVMNEMKECGIKANSLIY---TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581

Query: 453 SLVRGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
            L+ G+C+  ++ +A++ F RI  +     +   + A+I G CK  + + +  +F++MV 
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641

Query: 512 KGCVPNEITYTILVEG 527
           KG VP+   YT L++G
Sbjct: 642 KGLVPDRTAYTSLMDG 657



 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 8/438 (1%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M  +G  PD      ++    K  +    V   E +      PD   Y  L+N  C+
Sbjct: 285 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +   ++   +++ +G +   V+Y+TLV   C  G + Q+++    + + GL PN +T
Sbjct: 345 FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYT 404

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ L++   K   + +A +L ++++  G E N+V+Y  L+ GLC   R ++A ELF  + 
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 464

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             G  P++ SYN L+         + A  LL E+    + P ++ Y   I  L    + E
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIE 524

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-I 385
            A  V++EM   G    +  Y  ++    K G     +  LD+M          T+   I
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 584

Query: 386 AMLCEQGKVQEAFFIFQSLGN----KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
             LC+   V +A   F  + N    + N  +      +I  LC+      A  +  +M +
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIF---TAMIDGLCKDNQVEAATTLFEQMVQ 641

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
            G  PD   Y+SL+ G  ++G + EAL +   + E     D+  Y +L+ G     +   
Sbjct: 642 KGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQK 701

Query: 502 SIEIFQRMVNKGCVPNEI 519
           +    + M+ +G  P+E+
Sbjct: 702 ARSFLEEMIGEGIHPDEV 719



 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 196/405 (48%), Gaps = 9/405 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M G G KP+V   + L+   CK    ++A++    +   G++P+   YT L++  C+ GN
Sbjct: 358 MKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A +L  ++ + G +   VTY  L+ GLC   ++ ++ +L  ++   G+ PN+ +Y+ 
Sbjct: 418 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNA 477

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G  K + +D A++LL+++  RG +P+L+ Y   + GLC   + E A  +  ++   G
Sbjct: 478 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
              + + Y  L+ +    G   E   LL EM E D+  +VVT+ +LI  L  +    +A 
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597

Query: 330 EVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-M 387
           +  + ++   G    A  +  +I  LCK+ +V+      +QM+ +   P+   Y ++   
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657

Query: 388 LCEQGKVQEAFFI---FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
             +QG V EA  +      +G K +   +    +++  L        A   L EM   G 
Sbjct: 658 NFKQGNVLEALALRDKMAEIGMKLDLLAY---TSLVWGLSHCNQLQKARSFLEEMIGEGI 714

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
            PD     S+++     G +DEA+E+   L ++  +   DN NAL
Sbjct: 715 HPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTS-DNDNAL 758



 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 196/461 (42%), Gaps = 37/461 (8%)

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
           +P    +  L + L   G +  A+Q   K++       T + N L+      GK +   +
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
               +   G +P VFTY+ +++   KE  V+ A  L +++  RG  P+ V+YN ++ G  
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFG 308

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K GR +D +  F ++      P V++YN L+   C  G+         EM    L P+VV
Sbjct: 309 KVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVV 368

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           +Y+ L+ +    G  +QA +   +M R G      +Y  +I   CK G +    +  ++M
Sbjct: 369 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 428

Query: 371 ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP--------MHDYCK---- 417
           +      N  TY A I  LC+  +++EA  +F  +      P        +H + K    
Sbjct: 429 LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNM 488

Query: 418 -----------------------NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
                                    I  LC       A  ++ EM +CG   +S  Y++L
Sbjct: 489 DRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTL 548

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK-G 513
           +    + G   E L +   ++E D    +  +  LI G CK +    +++ F R+ N  G
Sbjct: 549 MDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG 608

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRST 554
              N   +T +++GL  +N+++ A  L +++  + ++   T
Sbjct: 609 LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649



 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 16/226 (7%)

Query: 335 MTRSGFNVTATSYNPI-----IARLCKEGKVDLVVQCLDQMICRRYS----------PNE 379
           MTR+GF  +  SY  +      AR+  +    L    L +  C  +           P  
Sbjct: 133 MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 192

Query: 380 GTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
           G ++A+ ++L + G ++EA   F  +   +  P    C  ++    + G T    +   +
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M   G  P  +TY+ ++  MC+EG ++ A  +F  ++    +PD   YN++I GF K  R
Sbjct: 253 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 312

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            D ++  F+ M +  C P+ ITY  L+       +L I     +E+
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREM 358


>AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3134107-3135930 REVERSE
           LENGTH=607
          Length = 607

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 165/339 (48%), Gaps = 1/339 (0%)

Query: 125 IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK 184
           I+ +G   +   +  L+N  C+ GNI  A ++ +++ +   Q   V++NTL+ G C  G 
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           L++  +L  ++ K   +P+VFTYS L+    KE  +D A  L D++  RG  PN V +  
Sbjct: 291 LDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           L+ G  + G  +   E ++ + +KG  P +V YN L+   C  G    A  ++  M    
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           L P  +TY  LI      G  E A E+  EM ++G  +    ++ ++  +CKEG+V    
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 365 QCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML 423
           + L +M+     P++ TY  +    C++G  Q  F + + + +  + P       +++ L
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGL 530

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
           C+ G    A  +L  M   G  PD  TY++L+ G  R  
Sbjct: 531 CKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHA 569



 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 142/272 (52%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L++ F     M     +PDV   + L+  LCK NK   A  + + +   G+IP+   +T 
Sbjct: 291 LDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L++   R G I    +  +K+   G Q   V YNTLV G C +G L  +  ++D + ++G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L+P+  TY+ L++G  +   V+ A+++  ++   G E + V ++ L+ G+CKEGR  DA 
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
              R++   G  P  V+Y +++ + C +G  +    LL EM  +   PSVVTYN+L+  L
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGL 530

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
              G+ + A  +LD M   G      +YN ++
Sbjct: 531 CKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562



 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 151/310 (48%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE  ++DA    + +  +  +P V     L+   CK     +  R+   +  S   PD  
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y+ L+N LC+   +  A  L +++ + G     V + TL+ G   +G+++   +   ++
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             KGL+P++  Y+ L+ G  K   +  A  ++D +I RG  P+ ++Y  L+ G C+ G  
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           E A+E+ +++   G     V ++ L+  +C EGR  +A   L EM    + P  VTY ++
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           + +    G  +  F++L EM   G   +  +YN ++  LCK G++      LD M+    
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551

Query: 376 SPNEGTYNAI 385
            P++ TYN +
Sbjct: 552 VPDDITYNTL 561



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 178/392 (45%), Gaps = 20/392 (5%)

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
           G+ M++++     GF      +N L+   C  G ++ + ++ D +TK+ L+P V +++ L
Sbjct: 226 GFYMEILDA----GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL 281

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           + G  K   +DE  +L   +      P++ +Y+ L+  LCKE + + A  LF ++  +G 
Sbjct: 282 INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGL 341

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P+ V +  L+      G  +       +M  + L P +V YN L+     +G    A  
Sbjct: 342 IPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARN 401

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LC 389
           ++D M R G      +Y  +I   C+ G V+  ++   +M       +   ++A+   +C
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           ++G+V +A    + +      P       ++   C+KG+    F++L EM   G  P   
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVV 521

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY+ L+ G+C+ G +  A  +   +     +PD   YN L+ G  ++  +       +R 
Sbjct: 522 TYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSS------KRY 575

Query: 510 VNK---GCVPNEITYTILVEGLAFENELDIAA 538
           + K   G V +  +Y  +V      NELD A+
Sbjct: 576 IQKPEIGIVADLASYKSIV------NELDRAS 601



 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 158/354 (44%), Gaps = 53/354 (14%)

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           LLDR+ K  L P    + F +E                 I+  G   N+  +N+L+   C
Sbjct: 211 LLDRMMK--LNPTGTIWGFYME-----------------ILDAGFPLNVYVFNILMNKFC 251

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           KEG   DA ++F ++  +   P+VVS+N L+   C  G  +E   L  +M++    P V 
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TY+ LI +L    + + A  + DEM + G       +  +I    + G++DL+ +   +M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           + +   P+   YN +                                  ++  C+ G+  
Sbjct: 372 LSKGLQPDIVLYNTL----------------------------------VNGFCKNGDLV 397

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A  ++  M + G  PD  TY++L+ G CR G ++ ALEI + +++N    D   ++AL+
Sbjct: 398 AARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALV 457

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            G CK  R   +    + M+  G  P+++TYT++++    + +      L+KE+
Sbjct: 458 CGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 31/356 (8%)

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL-----TGLC 250
           ++ G +  V TY  L           EA  L++ +++R G+ +  S  + L     T +C
Sbjct: 110 SQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMC 169

Query: 251 KEGRTEDAIEL-FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
             G   DA+ + + DL   GF P  +    L R   ++        LL  M +  L+P+ 
Sbjct: 170 --GFLVDALMITYTDL---GFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMK--LNPTG 222

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
             +   +             E+LD    +GF +    +N ++ + CKEG +    +  D+
Sbjct: 223 TIWGFYM-------------EILD----AGFPLNVYVFNILMNKFCKEGNISDAQKVFDE 265

Query: 370 MICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           +  R   P   ++N  I   C+ G + E F +   +   +  P       +I+ LC++  
Sbjct: 266 ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENK 325

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              A  +  EM K G  P+   +++L+ G  R G +D   E ++ +      PDI  YN 
Sbjct: 326 MDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNT 385

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           L+ GFCK      +  I   M+ +G  P++ITYT L++G     +++ A  + KE+
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441



 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%)

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
            C++G + +A  +F  +  +   P       +I+  C+ GN    F++ ++M K    PD
Sbjct: 250 FCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            +TYS+L+  +C+E  +D A  +F  + +   +P+   +  LI G  +    DL  E +Q
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQ 369

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           +M++KG  P+ + Y  LV G     +L  A  ++  +  R
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 22/240 (9%)

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML------- 388
           ++ GF  T  +Y  ++AR     ++    Q L +++  R   N  +   I+++       
Sbjct: 110 SQPGFRFTVETYF-VLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPM 168

Query: 389 ------------CEQGKVQEAFFIFQ-SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
                        + G + +A   F+ S  ++ + P+   C N++  + +   T   +  
Sbjct: 169 CGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRG-CGNLLDRMMKLNPTGTIWGF 227

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             E+   GF  + Y ++ L+   C+EG + +A ++F  + +    P + ++N LI G+CK
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK 287

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
               D    +  +M      P+  TY+ L+  L  EN++D A GL  E+  R ++    +
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVI 347


>AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15510901-15512691 FORWARD
           LENGTH=596
          Length = 596

 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 195/415 (46%), Gaps = 10/415 (2%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           +ND+ +  E +   G KP +   T LL  L K        ++ + +V  G++ +   Y  
Sbjct: 149 INDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNV 208

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           LV+   + G+   A +L+ ++EE G      TYNTL+   C      ++L + DR+ + G
Sbjct: 209 LVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSG 268

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLL----DDIIARGGEPNLVSYNVLLTGLCKEGRT 255
           + PN+ TY+  + G  +E  + EA +L     DD+ A     N V+Y  L+ G C+    
Sbjct: 269 VAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTA-----NHVTYTTLIDGYCRMNDI 323

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++A+ L   + ++GFSP VV+YN +LR LC +GR  EAN LL EM  + + P  +T N L
Sbjct: 324 DEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTL 383

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I +         A +V  +M  SG  +   SY  +I   CK  +++   + L  MI + +
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGF 443

Query: 376 SPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
           SP   TY+ +      Q K  E   + +    +  C      + +I  +C+      A  
Sbjct: 444 SPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKV 503

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
           +   M K G   DS  ++++     R G + EA  +F ++     M ++  Y ++
Sbjct: 504 LFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSI 558



 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 201/465 (43%), Gaps = 55/465 (11%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL------CSH----------- 182
           ++  L +  +   A QL++K+ +    +  +   +LV G+       SH           
Sbjct: 86  MILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAK 145

Query: 183 -GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS 241
            G +N S+ + +++   GLKP++   + LL    K+R  D   K+   ++  G   N+  
Sbjct: 146 AGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHV 205

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           YNVL+    K G  E A +L  ++  KG  P + +YN L+   C +    EA  +   M+
Sbjct: 206 YNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME 265

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
              ++P++VTYN  I   S  GR  +A  +  E+ +        +Y  +I   C+   +D
Sbjct: 266 RSGVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANHVTYTTLIDGYCRMNDID 324

Query: 362 LVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
             ++  + M  R +SP   TYN+I   LCE G+++EA  +   +  K+  P +  C  +I
Sbjct: 325 EALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLI 384

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
           +  C+  +   A ++  +M + G   D Y+Y +L+ G C+   L+ A E    + E  + 
Sbjct: 385 NAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFS 444

Query: 481 PDIDNYNALILGF-----------------------------------CKYQRTDLSIEI 505
           P    Y+ L+ GF                                   CK ++ D +  +
Sbjct: 445 PGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVL 504

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           F+ M  KG V + + +T +        ++  A+ L   +Y R ++
Sbjct: 505 FESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLM 549



 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 1/293 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P++      ++   +  + R+A R+   I    +  +   YT L++  CR  +I  A
Sbjct: 268 GVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANHVTYTTLIDGYCRMNDIDEA 326

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           ++L E +E  GF  G VTYN++++ LC  G++ ++ +LL  ++ K ++P+  T + L+  
Sbjct: 327 LRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINA 386

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   +  A+K+   +I  G + ++ SY  L+ G CK    E+A E    +  KGFSP 
Sbjct: 387 YCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPG 446

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
             +Y+ L+     + + +E   LL E ++  L   V  Y  LI  +    + + A  + +
Sbjct: 447 YATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDYAKVLFE 506

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
            M + G    +  +  +     + GKV       D M  RR   N   Y +I+
Sbjct: 507 SMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSIS 559



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 3/225 (1%)

Query: 79  RLND---AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           R+ND   A    E M  +G  P V     +L  LC+  + R+A R++  + G  I PD  
Sbjct: 319 RMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNI 378

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
               L+N  C+  ++  A+++ +K+ E G +    +Y  L+ G C   +L  + + L  +
Sbjct: 379 TCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSM 438

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +KG  P   TYS+L++G Y +   DE  KLL++   RG   ++  Y  L+  +CK  + 
Sbjct: 439 IEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQV 498

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           + A  LF  +  KG     V +  +  +    G+  EA+ L   M
Sbjct: 499 DYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVM 543



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 113/250 (45%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           T L+   C+ N   +A+R+ E++   G  P    Y  ++  LC  G I  A +L+ ++  
Sbjct: 311 TTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSG 370

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
              +   +T NTL+   C    +  ++++  ++ + GLK ++++Y  L+ G  K   ++ 
Sbjct: 371 KKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELEN 430

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A + L  +I +G  P   +Y+ L+ G   + + ++  +L  +   +G    V  Y  L+R
Sbjct: 431 AKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIR 490

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
            +C   + + A  L   M+++ L    V +  +  +    G+  +A  + D M      V
Sbjct: 491 RICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMV 550

Query: 343 TATSYNPIIA 352
               Y  I A
Sbjct: 551 NLKLYKSISA 560


>AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4772881-4775697 REVERSE
           LENGTH=938
          Length = 938

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 221/479 (46%), Gaps = 43/479 (8%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV +G   D+   T L+  L K+   R+A +  +M++    +P+   YT LV+ LC+ G+
Sbjct: 320 MVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGD 379

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A  ++ ++ E       VTY++++ G    G L +++ LL ++  + + PN FTY  
Sbjct: 380 LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGT 439

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +++G +K    + A++L  ++   G E N    + L+  L + GR ++   L +D+ +KG
Sbjct: 440 VIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKG 499

Query: 270 FS-----------------------------------PSVVSYNILLRSLCYEGRWEEAN 294
            +                                     VVSYN+L+  +   G+   A+
Sbjct: 500 VTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGK-VGAD 558

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
                M E+ + P + T+NI++ S    G +E   ++ D+M   G   +  S N ++  L
Sbjct: 559 WAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGML 618

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFF----IFQSLGNKQNC 410
           C+ GK++  +  L+QM+     PN  TY        + K  +A F       S G K + 
Sbjct: 619 CENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSR 678

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
            +++    +I+ LC+ G T  A  ++ +M   GF PD+ T++SL+ G      + +AL  
Sbjct: 679 QVYN---TLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALST 735

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           + ++ E    P++  YN +I G           +    M ++G  P++ TY  L+ G A
Sbjct: 736 YSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQA 794



 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 208/472 (44%), Gaps = 45/472 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM-EMIVGSGIIPDAACY 137
           RL  A   L  M   G  PD      L++    +      V ++   ++  G+ PD    
Sbjct: 73  RLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFAL 132

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             L++  C+ G + +A+ L+           TVTYNT++ GLC HG  +++ Q L  + K
Sbjct: 133 NVLIHSFCKVGRLSFAISLLR---NRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVK 189

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
            G+ P+  +Y+ L++G  K      A  L+D+I     E NL+++ +LL+        E+
Sbjct: 190 MGILPDTVSYNTLIDGFCKVGNFVRAKALVDEI----SELNLITHTILLSSYYNLHAIEE 245

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A   +RD+   GF P VV+++ ++  LC  G+  E   LL EM+E  + P+ VTY  L+ 
Sbjct: 246 A---YRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVD 302

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           SL        A  +  +M   G  V    Y  ++  L K G +    +    ++     P
Sbjct: 303 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVP 362

Query: 378 NEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
           N  TY A+                                  +  LC+ G+   A  ++ 
Sbjct: 363 NVVTYTAL----------------------------------VDGLCKAGDLSSAEFIIT 388

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           +M +    P+  TYSS++ G  ++GML+EA+ + R +E+ + +P+   Y  +I G  K  
Sbjct: 389 QMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAG 448

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           + +++IE+ + M   G   N      LV  L     +    GL+K++  + V
Sbjct: 449 KEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGV 500



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 210/456 (46%), Gaps = 6/456 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+  L +A   L  M  +   P+      ++  L K+ K   A+ + + +   G+  +  
Sbjct: 411 KKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY 470

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
               LVN L R G I     LV+ +   G     + Y +L+      G    +L   + +
Sbjct: 471 ILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM 530

Query: 196 TKKGLKPNVFTYSFLLEGAYK--ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            ++G+  +V +Y+ L+ G  K  + G D A K + +   +G EP++ ++N+++    K+G
Sbjct: 531 QERGMPWDVVSYNVLISGMLKFGKVGADWAYKGMRE---KGIEPDIATFNIMMNSQRKQG 587

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
            +E  ++L+  + + G  PS++S NI++  LC  G+ EEA  +L +M   ++ P++ TY 
Sbjct: 588 DSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYR 647

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           I + + S H R +  F+  + +   G  ++   YN +IA LCK G        +  M  R
Sbjct: 648 IFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEAR 707

Query: 374 RYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
            + P+  T+N++      G  V++A   +  +      P       +I  L   G     
Sbjct: 708 GFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEV 767

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
            + L EM   G  PD +TY++L+ G  + G +  ++ I+  +  +  +P    YN LI  
Sbjct: 768 DKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISE 827

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           F    +   + E+ + M  +G  PN  TY  ++ GL
Sbjct: 828 FANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGL 863



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 220/490 (44%), Gaps = 30/490 (6%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D      ++  LC+   A +A + +  +V  GI+PD   Y  L++  C+ GN   A  LV
Sbjct: 160 DTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALV 219

Query: 158 EKVEE----------------------------HGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           +++ E                             GF    VT+++++  LC  GK+ +  
Sbjct: 220 DEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGG 279

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            LL  + +  + PN  TY+ L++  +K      A+ L   ++ RG   +LV Y VL+ GL
Sbjct: 280 LLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGL 339

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
            K G   +A + F+ L      P+VV+Y  L+  LC  G    A  ++ +M E+ + P+V
Sbjct: 340 FKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNV 399

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
           VTY+ +I      G  E+A  +L +M          +Y  +I  L K GK ++ ++   +
Sbjct: 400 VTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKE 459

Query: 370 MICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           M       N    +A+   L   G+++E   + + + +K          ++I +  + G+
Sbjct: 460 MRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGD 519

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              A     EM + G   D  +Y+ L+ GM + G +  A   ++ + E    PDI  +N 
Sbjct: 520 EEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-ADWAYKGMREKGIEPDIATFNI 578

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
           ++    K   ++  ++++ +M + G  P+ ++  I+V  L    +++ A  ++ ++ + E
Sbjct: 579 MMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLME 638

Query: 549 VLSRSTVDRL 558
           +    T  R+
Sbjct: 639 IHPNLTTYRI 648



 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 200/440 (45%), Gaps = 11/440 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  PDV     L++  CK  +   A+ ++   V   I  D   Y  +++ LC  G 
Sbjct: 120 MIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRV---ISIDTVTYNTVISGLCEHGL 176

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A Q + ++ + G    TV+YNTL+ G C  G   ++  L+D ++    + N+ T++ 
Sbjct: 177 ADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEIS----ELNLITHTI 232

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           LL   Y    ++EA +   D++  G +P++V+++ ++  LCK G+  +   L R++    
Sbjct: 233 LLSSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMS 289

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ V+Y  L+ SL     +  A  L ++M    +   +V Y +L+  L   G   +A 
Sbjct: 290 VYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAE 349

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
           +    +          +Y  ++  LCK G +      + QM+ +   PN  TY++ I   
Sbjct: 350 KTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGY 409

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            ++G ++EA  + + + ++   P       VI  L + G    A ++  EM   G   ++
Sbjct: 410 VKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENN 469

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           Y   +LV  + R G + E   + + +       D  NY +LI  F K    + ++   + 
Sbjct: 470 YILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEE 529

Query: 509 MVNKGCVPNEITYTILVEGL 528
           M  +G   + ++Y +L+ G+
Sbjct: 530 MQERGMPWDVVSYNVLISGM 549



 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 205/474 (43%), Gaps = 28/474 (5%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCK-SNKARKAVRVMEM--------------- 124
           ++A+  L  MV  G  PD      L+   CK  N  R    V E+               
Sbjct: 178 DEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSY 237

Query: 125 ------------IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY 172
                       +V SG  PD   ++ ++N LC+ G +     L+ ++EE       VTY
Sbjct: 238 YNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTY 297

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
            TLV  L        +L L  ++  +G+  ++  Y+ L++G +K   + EA K    ++ 
Sbjct: 298 TTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLE 357

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
               PN+V+Y  L+ GLCK G    A  +   +  K   P+VV+Y+ ++     +G  EE
Sbjct: 358 DNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEE 417

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
           A  LL +M+++++ P+  TY  +I  L   G+ E A E+  EM   G        + ++ 
Sbjct: 418 AVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVN 477

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
            L + G++  V   +  M+ +  + ++  Y ++  +  +G  +EA   +     ++  P 
Sbjct: 478 HLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPW 537

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                NV+     K     A      M + G  PD  T++ ++    ++G  +  L+++ 
Sbjct: 538 DVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWD 597

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
            ++     P + + N ++   C+  + + +I I  +M+     PN  TY I ++
Sbjct: 598 KMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLD 651



 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 18/345 (5%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNK-----ARKAVRVMEMIVGSGIIPDAACYTHLVNFL 144
           M  +G   DV     L+  + K  K     A K +R        GI PD A +  ++N  
Sbjct: 530 MQERGMPWDVVSYNVLISGMLKFGKVGADWAYKGMR------EKGIEPDIATFNIMMNSQ 583

Query: 145 CRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNV 204
            ++G+    ++L +K++  G +   ++ N +V  LC +GK+ +++ +L+++    + PN+
Sbjct: 584 RKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNL 643

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
            TY   L+ + K +  D   K  + +++ G + +   YN L+  LCK G T+ A  +  D
Sbjct: 644 TTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGD 703

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           + A+GF P  V++N L+          +A    + M E  +SP+V TYN +I  LS  G 
Sbjct: 704 MEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGL 763

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG--KVDLVVQCLDQMICRRYSPNEGTY 382
            ++  + L EM   G      +YN +I+   K G  K  + + C  +MI     P   TY
Sbjct: 764 IKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYC--EMIADGLVPKTSTY 821

Query: 383 NA-IAMLCEQGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCR 425
           N  I+     GK+ +A  + + +G +   P    YC  +IS LC+
Sbjct: 822 NVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYC-TMISGLCK 865



 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 22/380 (5%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV--DEAMKLLDD 229
           ++TL +   S  +L  + + L  +   G+ P+   ++ L+   +   G+  D+   +   
Sbjct: 61  FHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIH-QFNVNGLVHDQVSLIYSK 119

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +IA G  P++ + NVL+   CK GR   AI L R+   +  S   V+YN ++  LC  G 
Sbjct: 120 MIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRN---RVISIDTVTYNTVISGLCEHGL 176

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF---NVTATS 346
            +EA   L+EM +  + P  V+YN LI      G   +A  ++DE++        +  +S
Sbjct: 177 ADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSS 236

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLG 405
           Y  + A   +E   D+V+   D        P+  T+++I   LC+ GKV E   + + + 
Sbjct: 237 YYNLHA--IEEAYRDMVMSGFD--------PDVVTFSSIINRLCKGGKVLEGGLLLREME 286

Query: 406 NKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY-EMTKCGFTPDSYTYSSLVRGMCREGML 464
                P H     ++  L  K N Y     LY +M   G   D   Y+ L+ G+ + G L
Sbjct: 287 EMSVYPNHVTYTTLVDSLF-KANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDL 345

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EA + F++L E++ +P++  Y AL+ G CK      +  I  +M+ K  +PN +TY+ +
Sbjct: 346 REAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSM 405

Query: 525 VEGLAFENELDIAAGLMKEL 544
           + G   +  L+ A  L++++
Sbjct: 406 INGYVKKGMLEEAVSLLRKM 425



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D  SK  R +  F   E ++  G K        L+  LCK    +KA  VM  +   G I
Sbjct: 651 DTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFI 710

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   +  L++      ++  A+     + E G      TYNT+++GL   G + +  + 
Sbjct: 711 PDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKW 770

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L  +  +G++P+ FTY+ L+ G  K   +  +M +  ++IA G  P   +YNVL++    
Sbjct: 771 LSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFAN 830

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY-----EGRWE-------EANGLLAE 299
            G+   A EL +++  +G SP+  +Y  ++  LC      +  W        EA GLL E
Sbjct: 831 VGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAKGLLKE 890

Query: 300 MDEE 303
           M EE
Sbjct: 891 MVEE 894


>AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=811
          Length = 811

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 193/434 (44%), Gaps = 7/434 (1%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A R++ +++  G  P+   +  L+N  C+RG +  A  L + +E+ G +   + Y+TL+ 
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
           G    G L    +L  +   KG+K +V  +S  ++   K   +  A  +   ++ +G  P
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISP 389

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+V+Y +L+ GLC++GR  +A  ++  +  +G  PS+V+Y+ L+   C  G       L 
Sbjct: 390 NVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALY 449

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            +M +    P VV Y +L+  LS  G    A     +M      +    +N +I   C+ 
Sbjct: 450 EDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRL 509

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNAIA-------MLCEQGKVQEAFFIFQSLGNKQNC 410
            + D  ++    M      P+  T+  +          C+  K      +F  +   +  
Sbjct: 510 NRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKIS 569

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                C  VI +L +      A +    + +    PD  TY++++ G C    LDEA  I
Sbjct: 570 ADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERI 629

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
           F +L+   + P+      LI   CK    D +I +F  M  KG  PN +TY  L++  + 
Sbjct: 630 FELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSK 689

Query: 531 ENELDIAAGLMKEL 544
             +++ +  L +E+
Sbjct: 690 SVDIEGSFKLFEEM 703



 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 222/479 (46%), Gaps = 8/479 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K   ++ AF   + M  +G +PD+   + L+    K+       ++    +  G+  D  
Sbjct: 298 KRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVV 357

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            ++  ++   + G++  A  + +++   G     VTY  L+KGLC  G++ ++  +  ++
Sbjct: 358 VFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQI 417

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            K+G++P++ TYS L++G  K   +     L +D+I  G  P++V Y VL+ GL K+G  
Sbjct: 418 LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY--- 312
             A+     +  +    +VV +N L+   C   R++EA  +   M    + P V T+   
Sbjct: 478 LHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTV 537

Query: 313 ---NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
              +I+  +   H +     ++ D M R+  +      N +I  L K  +++   +  + 
Sbjct: 538 MRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNN 597

Query: 370 MICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           +I  +  P+  TYN  I   C   ++ EA  IF+ L      P       +I +LC+  +
Sbjct: 598 LIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNND 657

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              A +M   M + G  P++ TY  L+    +   ++ + ++F  ++E    P I +Y+ 
Sbjct: 658 MDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSI 717

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           +I G CK  R D +  IF + ++   +P+ + Y IL+ G      L + A L+ E  +R
Sbjct: 718 IIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL-VEAALLYEHMLR 775



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 12/283 (4%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLY------DLCKSNKARKAVRVMEMIVGSGIIP 132
           R ++A      M   G KPDVA  T ++         CK  K    +++ +++  + I  
Sbjct: 511 RFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISA 570

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D A    +++ L +   I  A +    + E   +   VTYNT++ G CS  +L+++ ++ 
Sbjct: 571 DIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIF 630

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           + L      PN  T + L+    K   +D A+++   +  +G +PN V+Y  L+    K 
Sbjct: 631 ELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKS 690

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
              E + +LF ++  KG SPS+VSY+I++  LC  GR +EA  +  +  +  L P VV Y
Sbjct: 691 VDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAY 750

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSG------FNVTATSYNP 349
            ILI      GR  +A  + + M R+G           + YNP
Sbjct: 751 AILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALSEYNP 793


>AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:326136-327815 REVERSE
           LENGTH=559
          Length = 559

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 12/443 (2%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD     + ++ L  SN    +++ +  +V  G  P  + +  +V+F+C+ G + +A  +
Sbjct: 19  PDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDI 78

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL-TKKGL--KPNVFTYSFLLEG 213
           V  +   G +   ++YN+L+ G C +G +  +  +L+ L    G   KP++ +++ L  G
Sbjct: 79  VHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNG 138

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K + +DE    +  ++ +   PN+V+Y+  +   CK G  + A++ F  +     SP+
Sbjct: 139 FSKMKMLDEVFVYM-GVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPN 197

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           VV++  L+   C  G  E A  L  EM    +S +VVTY  LI      G  ++A E+  
Sbjct: 198 VVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYS 257

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
            M        +  Y  II    + G  D  ++ L +M+ +    +   Y   I+ LC  G
Sbjct: 258 RMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNG 317

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           K++EA  I + +      P       +++   + G    A  M +++ + GF PD    S
Sbjct: 318 KLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALS 377

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE-IFQRMVN 511
           +++ G+ + G L EA+  F I + ND M     Y  LI   CK +   + +E +F ++  
Sbjct: 378 TMIDGIAKNGQLHEAIVYFCIEKANDVM-----YTVLIDALCK-EGDFIEVERLFSKISE 431

Query: 512 KGCVPNEITYTILVEGLAFENEL 534
            G VP++  YT  + GL  +  L
Sbjct: 432 AGLVPDKFMYTSWIAGLCKQGNL 454



 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 222/487 (45%), Gaps = 37/487 (7%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L Y+V +G  P  +    ++  +CK  + + A  ++  +   G  PD   Y  L++  CR
Sbjct: 44  LAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCR 103

Query: 147 RGNIGYAMQLVEKVE-EHGF--QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
            G+I  A  ++E +   HGF  +   V++N+L  G      L++    +  + K    PN
Sbjct: 104 NGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLK-CCSPN 162

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           V TYS  ++   K   +  A+K    +      PN+V++  L+ G CK G  E A+ L++
Sbjct: 163 VVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYK 222

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           ++     S +VV+Y  L+   C +G  + A  + + M E+ + P+ + Y  +I      G
Sbjct: 223 EMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRG 282

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
            ++ A + L +M   G  +  T+Y  II+ LC  GK+    + ++ M      P+   + 
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFT 342

Query: 384 AIA-MLCEQGKVQEAFFIFQSL-----------------GNKQNCPMHD----YCKN--- 418
            +     + G+++ A  ++  L                 G  +N  +H+    +C     
Sbjct: 343 TMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKAN 402

Query: 419 ------VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                 +I  LC++G+     ++  ++++ G  PD + Y+S + G+C++G L +A ++  
Sbjct: 403 DVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKT 462

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            + +   + D+  Y  LI G         + ++F  M+N G  P+   + +L+   A+E 
Sbjct: 463 RMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIR--AYEK 520

Query: 533 ELDIAAG 539
           E ++AA 
Sbjct: 521 EGNMAAA 527



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 199/441 (45%), Gaps = 40/441 (9%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK   L++ F+++  M+ K   P+V   +  +   CKS + + A++    +    + P+ 
Sbjct: 140 SKMKMLDEVFVYMGVML-KCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNV 198

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             +T L++  C+ G++  A+ L +++         VTY  L+ G C  G++ ++ ++  R
Sbjct: 199 VTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSR 258

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           + +  ++PN   Y+ +++G ++    D AMK L  ++ +G   ++ +Y V+++GLC  G+
Sbjct: 259 MVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGK 318

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            ++A E+  D+      P +V +  ++ +    GR + A  +  ++ E    P VV  + 
Sbjct: 319 LKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALST 378

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           +I  ++ +G+  +A                      I   C E   D++   L       
Sbjct: 379 MIDGIAKNGQLHEA----------------------IVYFCIEKANDVMYTVL------- 409

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
                     I  LC++G   E   +F  +      P      + I+ LC++GN   AF+
Sbjct: 410 ----------IDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFK 459

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +   M + G   D   Y++L+ G+  +G++ EA ++F  +  +   PD   ++ LI  + 
Sbjct: 460 LKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYE 519

Query: 495 KYQRTDLSIEIFQRMVNKGCV 515
           K      + ++   M  +G V
Sbjct: 520 KEGNMAAASDLLLDMQRRGLV 540



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 197/426 (46%), Gaps = 46/426 (10%)

Query: 116 RKAVRVMEMIVGSGIIPDA-ACYTH---LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT 171
           R+A++ +  +  S  +PD   C  H   L+N  C   ++ +   LV +    G+     +
Sbjct: 3   REALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSR----GYTPHRSS 58

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           +N++V  +C  G++  +  ++  + + G +P+V +Y+ L++G  +   +  A  +L+ + 
Sbjct: 59  FNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118

Query: 232 ARGG---EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           A  G   +P++VS+N L  G  K  +  D + ++  +  K  SP+VV+Y+  + + C  G
Sbjct: 119 ASHGFICKPDIVSFNSLFNGFSKM-KMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSG 177

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
             + A      M  + LSP+VVT+  LI      G  E A  +  EM R   ++   +Y 
Sbjct: 178 ELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYT 237

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ 408
            +I   CK+G++    +   +M+  R  PN   Y  I          + FF         
Sbjct: 238 ALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTII---------DGFF--------- 279

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
                           ++G++  A + L +M   G   D   Y  ++ G+C  G L EA 
Sbjct: 280 ----------------QRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEAT 323

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           EI   +E++D +PD+  +  ++  + K  R   ++ ++ +++ +G  P+ +  + +++G+
Sbjct: 324 EIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGI 383

Query: 529 AFENEL 534
           A   +L
Sbjct: 384 AKNGQL 389



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 30/259 (11%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           ++A   L  M+ +G + D+     ++  LC + K ++A  ++E +  S ++PD   +T +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTM 344

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT----------------------------- 171
           +N   + G +  A+ +  K+ E GF+   V                              
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDV 404

Query: 172 -YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            Y  L+  LC  G   +  +L  ++++ GL P+ F Y+  + G  K+  + +A KL   +
Sbjct: 405 MYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRM 464

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  G   +L++Y  L+ GL  +G   +A ++F ++   G SP    +++L+R+   EG  
Sbjct: 465 VQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNM 524

Query: 291 EEANGLLAEMDEEDLSPSV 309
             A+ LL +M    L  +V
Sbjct: 525 AAASDLLLDMQRRGLVTAV 543



 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 9/255 (3%)

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
            LA +     +P   ++N +++ +   G+ + A +++  M R G      SYN +I   C
Sbjct: 43  FLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHC 102

Query: 356 KEGKV---DLVVQCL---DQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQN 409
           + G +    LV++ L      IC+   P+  ++N++     + K+ +  F++  +  K  
Sbjct: 103 RNGDIRSASLVLESLRASHGFICK---PDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCC 159

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P        I   C+ G    A +  + M +   +P+  T++ L+ G C+ G L+ A+ 
Sbjct: 160 SPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVS 219

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +++ +       ++  Y ALI GFCK      + E++ RMV     PN + YT +++G  
Sbjct: 220 LYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFF 279

Query: 530 FENELDIAAGLMKEL 544
              + D A   + ++
Sbjct: 280 QRGDSDNAMKFLAKM 294


>AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24681550-24683514 FORWARD
           LENGTH=654
          Length = 654

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 51/487 (10%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLC-KSNKARKAVRVMEMIVGSGIIPDAACY 137
           R +  ++  + M+ +G  PDV     +L+  C K     K  ++++ +   GI P+   Y
Sbjct: 179 RFDSVWVDYQLMISRGLVPDV-HIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIY 237

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T  +  LCR   +  A ++ E +++HG      TY+ ++ G C  G + Q+  L   +  
Sbjct: 238 TIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILV 297

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
             L PNV  +  L++G  K R +  A  L   ++  G +PNL  YN L+ G CK G   +
Sbjct: 298 AELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLE 357

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A+ L  ++ +   SP V +Y IL+  LC E +  EAN L  +M  E + PS  TYN LI 
Sbjct: 358 AVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIH 417

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
                   EQA ++  EMT SG      +++ +I   C    +   +    +M  +   P
Sbjct: 418 GYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVP 477

Query: 378 NEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
           +  TY A+          +A F                         ++ N   A ++  
Sbjct: 478 DVVTYTALI---------DAHF-------------------------KEANMKEALRLYS 503

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN---YNALILGFC 494
           +M + G  P+ +T++ LV G  +EG L  A++ +   +EN+      N   +  LI G C
Sbjct: 504 DMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFY---QENNQQRSCWNHVGFTCLIEGLC 560

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD---------IAAGLMKELY 545
           +      +   F  M + G  P+  +Y  +++G   E  +          I  G++  L 
Sbjct: 561 QNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLL 620

Query: 546 MREVLSR 552
           + ++L+R
Sbjct: 621 VNQLLAR 627



 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 188/432 (43%), Gaps = 34/432 (7%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD      +L  L +  +        ++++  G++PD   Y  L     ++G      +L
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           ++++   G +     Y   +  LC   K+ ++ ++ + + K G+ PN++TYS +++G  K
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              V +A  L  +I+     PN+V +  L+ G CK      A  LF  +   G  P++  
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV 341

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN L+   C  G   EA GLL+EM+  +LSP V TY ILI  L +  +  +A  +  +M 
Sbjct: 342 YNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMK 401

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
                 ++ +YN +I   CKE  ++  +    +M      PN  T++ +           
Sbjct: 402 NERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTL----------- 450

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
                                  I   C   +   A  + +EMT  G  PD  TY++L+ 
Sbjct: 451 -----------------------IDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALID 487

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
              +E  + EAL ++  + E    P+   +  L+ GF K  R  ++I+ +Q    +    
Sbjct: 488 AHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCW 547

Query: 517 NEITYTILVEGL 528
           N + +T L+EGL
Sbjct: 548 NHVGFTCLIEGL 559



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 58/365 (15%)

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVS-------------------YNVLLTGLC 250
           +L GA+K       +K L + + R  EP+ +S                   +++L+    
Sbjct: 84  VLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFL 143

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVS-YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
           + G  E+A+ + R++     S + +S  N L+R   ++  W +   +++      L P V
Sbjct: 144 EMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISR----GLVPDV 199

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
             Y +L       G   +  ++LDEMT  G       Y   I  LC++ K++   +  + 
Sbjct: 200 HIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFEL 259

Query: 370 MICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           M      PN  TY+A+                                  I   C+ GN 
Sbjct: 260 MKKHGVLPNLYTYSAM----------------------------------IDGYCKTGNV 285

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A+ +  E+      P+   + +LV G C+   L  A  +F  + +    P++  YN L
Sbjct: 286 RQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCL 345

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           I G CK      ++ +   M +    P+  TYTIL+ GL  E+++  A  L +++    +
Sbjct: 346 IHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERI 405

Query: 550 LSRST 554
              S 
Sbjct: 406 FPSSA 410



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 10/180 (5%)

Query: 380 GTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK---GNTYPAFQM 435
           G ++ + M   E G  +EA ++ + +   +  P    C ++++ L R+    + +  +Q+
Sbjct: 133 GVFSLLIMEFLEMGLFEEALWVSREM---KCSPDSKACLSILNGLVRRRRFDSVWVDYQL 189

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
              M   G  PD + Y  L +   ++G+  +  ++   +      P++  Y   IL  C+
Sbjct: 190 ---MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCR 246

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
             + + + ++F+ M   G +PN  TY+ +++G      +  A GL KE+ + E+L    V
Sbjct: 247 DNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVV 306


>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
           protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
          Length = 659

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 220/493 (44%), Gaps = 16/493 (3%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           ND F  + ++   G KP       ++  L KSN    A    + +   G  PD   Y  L
Sbjct: 165 NDVFAQISFL---GMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNIL 221

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++ +C++G +  A++LV+++E+ G +    TY  L+ G    G+++++L+ L+ +  + L
Sbjct: 222 IHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKL 281

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            PN  T    + G ++     +A ++L   + +      V Y+ +L  L      ++  +
Sbjct: 282 NPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQ 341

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
             R +  +G+ P   ++N  +  L       E   +        + P    Y +L+ +L 
Sbjct: 342 FLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALL 401

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
              R  +    L +M   G   +  SYN +I  LCK  +++     L +M  R  SPN  
Sbjct: 402 NAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLV 461

Query: 381 TYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM------LCRKGNTYPAF 433
           T+N  ++    +G V++   + + L       +H +  +VI+       LCR      AF
Sbjct: 462 TFNTFLSGYSVRGDVKKVHGVLEKL------LVHGFKPDVITFSLIINCLCRAKEIKDAF 515

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
               EM + G  P+  TY+ L+R  C  G  D ++++F  ++EN   PD+  YNA I  F
Sbjct: 516 DCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
           CK ++   + E+ + M+  G  P+  TY+ L++ L+       A  +   +     +  S
Sbjct: 576 CKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635

Query: 554 TVDRLSMQYDLKE 566
              RL  + DL++
Sbjct: 636 YTKRLVEELDLRK 648



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 188/447 (42%), Gaps = 36/447 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K   L+ A+L  + M   G KPD      L++ +CK     +A+R+++ +   G  
Sbjct: 188 DALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNR 247

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKG------------- 178
           P+   YT L++     G +  A++ +E +          T  T V G             
Sbjct: 248 PNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEV 307

Query: 179 ----------------------LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
                                 L ++    ++ Q L ++ ++G  P+  T++  +    K
Sbjct: 308 LVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLK 367

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              + E  ++ D  ++RG +P    Y VL+  L    R  +     + +   G   SV S
Sbjct: 368 GHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYS 427

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN ++  LC   R E A   L EM +  +SP++VT+N  ++  S+ G  ++   VL+++ 
Sbjct: 428 YNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLL 487

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
             GF     +++ II  LC+  ++     C  +M+     PNE TYN  I   C  G   
Sbjct: 488 VHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTD 547

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
            +  +F  +      P        I   C+      A ++L  M + G  PD++TYS+L+
Sbjct: 548 RSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLI 607

Query: 456 RGMCREGMLDEALEIFRILEENDYMPD 482
           + +   G   EA E+F  +E +  +PD
Sbjct: 608 KALSESGRESEAREMFSSIERHGCVPD 634



 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 192/449 (42%), Gaps = 38/449 (8%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D +  + L N L R+G +  +M+L++++ + G++        L+      G       + 
Sbjct: 109 DQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVF 168

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
            +++  G+KP+   Y+ +++   K   +D A      + + G +P+  +YN+L+ G+CK+
Sbjct: 169 AQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKK 228

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G  ++AI L + +  +G  P+V +Y IL+      GR +EA   L  M    L+P+  T 
Sbjct: 229 GVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATI 288

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
              +  +       +AFEVL        N+    Y+ ++  L          Q L ++  
Sbjct: 289 RTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGE 348

Query: 373 RRYSPNEGTYNAIAMLC--------EQGKVQEAF-------------FIFQSLGNKQNCP 411
           R Y P+  T+NA AM C        E  ++ + F              + Q+L N Q   
Sbjct: 349 RGYIPDSSTFNA-AMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFS 407

Query: 412 MHD-YCKN---------------VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
             D Y K                VI  LC+      A   L EM   G +P+  T+++ +
Sbjct: 408 EGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFL 467

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
            G    G + +   +   L  + + PD+  ++ +I   C+ +    + + F+ M+  G  
Sbjct: 468 SGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIE 527

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKEL 544
           PNEITY IL+       + D +  L  ++
Sbjct: 528 PNEITYNILIRSCCSTGDTDRSVKLFAKM 556



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R ++   +L+ M   G    V     ++  LCK+ +   A   +  +   GI P+   + 
Sbjct: 405 RFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFN 464

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
             ++    RG++     ++EK+  HGF+   +T++ ++  LC   ++  +      + + 
Sbjct: 465 TFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEW 524

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G++PN  TY+ L+         D ++KL   +   G  P+L +YN  +   CK  + + A
Sbjct: 525 GIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKA 584

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
            EL + +   G  P   +Y+ L+++L   GR  EA  + + ++     P   T  ++
Sbjct: 585 EELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLV 641



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 74  KSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           ++KE++  DAF   + M+  G +P+      L+   C +    ++V++   +  +G+ PD
Sbjct: 507 RAKEIK--DAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPD 564

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
              Y   +   C+   +  A +L++ +   G +    TY+TL+K L   G+ +++ ++  
Sbjct: 565 LYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFS 624

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGV 220
            + + G  P+ +T   + E   ++ G+
Sbjct: 625 SIERHGCVPDSYTKRLVEELDLRKSGL 651


>AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8203873-8206341 REVERSE
           LENGTH=822
          Length = 822

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 217/481 (45%), Gaps = 44/481 (9%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ M  KG K D    + +L    +    R+A      +   G  P    Y  L+    +
Sbjct: 269 LDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK 328

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G    A+ +++++EE+     +VTYN LV      G   ++  +++ +TKKG+ PN  T
Sbjct: 329 AGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAIT 388

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   K    DEA+KL   +   G  PN  +YN +L+ L K+ R+ + I++  D+ 
Sbjct: 389 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMK 448

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
           + G SP+  ++N +L     +G  +  N +  EM      P   T+N LI++    G   
Sbjct: 449 SNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEV 508

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
            A ++  EMTR+GFN   T+YN ++  L ++G        +  M  + + P E +Y ++ 
Sbjct: 509 DASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSY-SLM 567

Query: 387 MLC-----------------EQGKV-----------------------QEAFFIFQSLGN 406
           + C                 ++G++                       + AF +F+  G 
Sbjct: 568 LQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGY 627

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
           K +  + +   +++S+  R      A  +L  + + G +PD  TY+SL+    R G   +
Sbjct: 628 KPDMVIFN---SMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWK 684

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           A EI + LE++   PD+ +YN +I GFC+      ++ +   M  +G  P   TY   V 
Sbjct: 685 AEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVS 744

Query: 527 G 527
           G
Sbjct: 745 G 745



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 199/431 (46%), Gaps = 6/431 (1%)

Query: 105 LLYDLCKSNKARKAVRVMEMIV---GSGIIP-DAACYTHLVNFLCRRGNIGYAMQLVEKV 160
           L+  L  S    +AV + E +V    SG +  D       V  L R      A +L++K+
Sbjct: 142 LVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKI 201

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK-ERG 219
               +      Y T++      GK  +++ L +R+ + G  P + TY+ +L+   K  R 
Sbjct: 202 PLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRS 261

Query: 220 VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI 279
             + + +LD++ ++G + +  + + +L+   +EG   +A E F +L + G+ P  V+YN 
Sbjct: 262 WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           LL+     G + EA  +L EM+E       VTYN L+ +    G +++A  V++ MT+ G
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAF 398
               A +Y  +I    K GK D  ++    M      PN  TYNA+ ++L ++ +  E  
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMI 441

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +   + +    P       ++++   KG      ++  EM  CGF PD  T+++L+   
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
            R G   +A +++  +    +   +  YNAL+    +         +   M +KG  P E
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTE 561

Query: 519 ITYTILVEGLA 529
            +Y+++++  A
Sbjct: 562 TSYSLMLQCYA 572



 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 190/400 (47%), Gaps = 7/400 (1%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A ++++ I     + D   YT +++   R G    A+ L E+++E G     VTYN ++ 
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253

Query: 178 GLCSHGK-LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
                G+   + L +LD +  KGLK + FT S +L    +E  + EA +   ++ + G E
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE 313

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           P  V+YN LL    K G   +A+ + +++         V+YN L+ +    G  +EA G+
Sbjct: 314 PGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGV 373

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           +  M ++ + P+ +TY  +I +    G+ ++A ++   M  +G      +YN +++ L K
Sbjct: 374 IEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGK 433

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNC---PMH 413
           + + + +++ L  M     SPN  T+N +  LC    + +  F+ +     ++C   P  
Sbjct: 434 KSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDK--FVNRVFREMKSCGFEPDR 491

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
           D    +IS   R G+   A +M  EMT+ GF     TY++L+  + R+G       +   
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           ++   + P   +Y+ ++  + K     L IE  +  + +G
Sbjct: 552 MKSKGFKPTETSYSLMLQCYAKGGNY-LGIERIENRIKEG 590



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/452 (21%), Positives = 205/452 (45%), Gaps = 44/452 (9%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D     +L+    ++  +++A  V+EM+   G++P+A  YT +++   + G    A++L 
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 409

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
             ++E G    T TYN ++  L    + N+ +++L  +   G  PN  T++ +L      
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTML-ALCGN 468

Query: 218 RGVDEAM-KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           +G+D+ + ++  ++ + G EP+  ++N L++   + G   DA +++ ++   GF+  V +
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR------------ 324
           YN LL +L  +G W     ++++M  +   P+  +Y++++   +  G             
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588

Query: 325 --------------------------TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
                                     +E+AF +     + G+      +N +++   +  
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFK---KHGYKPDMVIFNSMLSIFTRNN 645

Query: 359 KVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK 417
             D     L+ +     SP+  TYN++  M   +G+  +A  I ++L   Q  P      
Sbjct: 646 MYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYN 705

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
            VI   CR+G    A +ML EMT+ G  P  +TY++ V G    GM  E  ++   + +N
Sbjct: 706 TVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKN 765

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           D  P+   +  ++ G+C+  +   +++   ++
Sbjct: 766 DCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 155/358 (43%), Gaps = 41/358 (11%)

Query: 174 TLVKGLCSHGKLNQSLQLLDRLT----KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           +LVKGL   G   +++ L + L        LK +       +    +E     A KLLD 
Sbjct: 141 SLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDK 200

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           I  +    ++ +Y  +L    + G+ E AI+LF  +   G SP++V+YN++L      GR
Sbjct: 201 IPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGR 260

Query: 290 -WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
            W +  G+L EM  + L     T + ++++ +  G   +A E   E+   G+     +YN
Sbjct: 261 SWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYN 320

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ 408
            ++    K G     +  L +M                                    + 
Sbjct: 321 ALLQVFGKAGVYTEALSVLKEM-----------------------------------EEN 345

Query: 409 NCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
           +CP      N +++   R G +  A  ++  MTK G  P++ TY++++    + G  DEA
Sbjct: 346 SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEA 405

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           L++F  ++E   +P+   YNA++    K  R++  I++   M + GC PN  T+  ++
Sbjct: 406 LKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTML 463



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 37/383 (9%)

Query: 82  DAFLHLEY-MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           D  L L Y M   G  P+      +L  L K +++ + ++++  +  +G  P+ A +  +
Sbjct: 403 DEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTM 462

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           +     +G   +  ++  +++  GF+    T+NTL+      G    + ++   +T+ G 
Sbjct: 463 LALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 522

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG------R 254
              V TY+ LL    ++        ++ D+ ++G +P   SY+++L    K G      R
Sbjct: 523 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 582

Query: 255 TEDAIELFRDLPA-----------------------------KGFSPSVVSYNILLRSLC 285
            E+ I+  +  P+                              G+ P +V +N +L    
Sbjct: 583 IENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFT 642

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
               +++A G+L  + E+ LSP +VTYN L+      G   +A E+L  + +S       
Sbjct: 643 RNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLV 702

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           SYN +I   C+ G +   V+ L +M  R   P   TYN  ++     G   E   + + +
Sbjct: 703 SYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECM 762

Query: 405 GNKQNCPMHDYCKNVISMLCRKG 427
                 P     K V+   CR G
Sbjct: 763 AKNDCRPNELTFKMVVDGYCRAG 785



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 13/269 (4%)

Query: 70  KNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG 129
           K D +S E  ++D       M  KG KP     + +L    K        R+   I    
Sbjct: 539 KGDWRSGENVISD-------MKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQ 591

Query: 130 IIPDAACYTHLV--NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           I P       L+  NF CR   +  + +     ++HG++   V +N+++     +   +Q
Sbjct: 592 IFPSWMLLRTLLLANFKCR--ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 649

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLL 246
           +  +L+ + + GL P++ TY+ L++  Y  RG   +A ++L  +     +P+LVSYN ++
Sbjct: 650 AEGILESIREDGLSPDLVTYNSLMD-MYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 708

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
            G C+ G  ++A+ +  ++  +G  P + +YN  +      G + E   ++  M + D  
Sbjct: 709 KGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCR 768

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           P+ +T+ +++      G+  +A + + ++
Sbjct: 769 PNELTFKMVVDGYCRAGKYSEAMDFVSKI 797



 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 119/261 (45%), Gaps = 21/261 (8%)

Query: 65  NWRVGKN---DQKSKEVRLNDA--------------FLHLEYMVGKGQKPDVAQATQLLY 107
           +WR G+N   D KSK  +  +               +L +E +  + ++  +  +  LL 
Sbjct: 541 DWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLR 600

Query: 108 DLCKSNKARKAV----RVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
            L  +N   +A+    R   +    G  PD   +  +++   R      A  ++E + E 
Sbjct: 601 TLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRED 660

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G     VTYN+L+      G+  ++ ++L  L K  LKP++ +Y+ +++G  +   + EA
Sbjct: 661 GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEA 720

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           +++L ++  RG  P + +YN  ++G    G   +  ++   +      P+ +++ +++  
Sbjct: 721 VRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDG 780

Query: 284 LCYEGRWEEANGLLAEMDEED 304
            C  G++ EA   ++++   D
Sbjct: 781 YCRAGKYSEAMDFVSKIKTFD 801



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 6/242 (2%)

Query: 315 LITSLSLHGRTEQA---FEVLDEMTRSGFNVTATSYNPIIAR-LCKEGKVDLVVQCLDQM 370
           L+  L   G  E+A   FE L   + SG          I  R L +E +  +  + LD++
Sbjct: 142 LVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKI 201

Query: 371 ICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
             + Y  +   Y  I       GK ++A  +F+ +      P       ++ +  + G +
Sbjct: 202 PLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRS 261

Query: 430 Y-PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
           +     +L EM   G   D +T S+++    REG+L EA E F  L+   Y P    YNA
Sbjct: 262 WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
           L+  F K      ++ + + M    C  + +TY  LV           AAG+++ +  + 
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381

Query: 549 VL 550
           V+
Sbjct: 382 VM 383


>AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:18941118-18942524 FORWARD
           LENGTH=468
          Length = 468

 Score =  162 bits (410), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 204/450 (45%), Gaps = 39/450 (8%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           LCK     +A  ++   +  G++PD   Y  L+    R   I  A  +  ++ E G +  
Sbjct: 23  LCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPD 82

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL- 227
             TYN+L+ G   +  LN+ LQL D +   GL P++++Y+ L+   +K     EA K+L 
Sbjct: 83  VTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILH 142

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           +DI   G  P + +YN+LL  LCK G T++AIELF+ L ++   P +++YNIL+  LC  
Sbjct: 143 EDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKS 201

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
            R    + ++ E+ +   +P+ VTY  ++       R E+  ++  +M + G+     + 
Sbjct: 202 RRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFAN 261

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNK 407
             +++ L K G+ +   +C+ +++                    G   +    + +L   
Sbjct: 262 CAVVSALIKTGRAEEAYECMHELV------------------RSGTRSQDIVSYNTL--- 300

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                       +++  + GN      +L E+   G  PD YT++ +V G+   G    A
Sbjct: 301 ------------LNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGA 348

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            +    + E    P +   N LI G CK    D ++ +F  M     V +E TYT +V  
Sbjct: 349 EKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTYTSVVHN 404

Query: 528 LAFENELDIAAGLMKELYMREVLSRSTVDR 557
           L  +  L  A+ L+   Y + +   S+  R
Sbjct: 405 LCKDGRLVCASKLLLSCYNKGMKIPSSARR 434



 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 43/371 (11%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           ++ + +++A+     M   G +PDV     L+    K+    + +++ + ++ SG+ PD 
Sbjct: 59  TRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDM 118

Query: 135 ACYTHLVNFLCRRGNIGYAMQLV-EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
             Y  L++   + G  G A +++ E +   G   G  TYN L+  LC  G  + +++L  
Sbjct: 119 WSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFK 178

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL------- 246
            L K  +KP + TY+ L+ G  K R V     ++ ++   G  PN V+Y  +L       
Sbjct: 179 HL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTK 237

Query: 247 ----------------------------TGLCKEGRTEDAIELFRDLPAKGF-SPSVVSY 277
                                       + L K GR E+A E   +L   G  S  +VSY
Sbjct: 238 RIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRSQDIVSY 297

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N LL     +G  +  + LL E++ + L P   T+ I++  L   G T  A + L  +  
Sbjct: 298 NTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHLACIGE 357

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQE 396
            G   +  + N +I  LCK G VD  ++    M  R    +E TY ++   LC+ G++  
Sbjct: 358 MGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASMEVR----DEFTYTSVVHNLCKDGRLVC 413

Query: 397 AFFIFQSLGNK 407
           A  +  S  NK
Sbjct: 414 ASKLLLSCYNK 424



 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 125/270 (46%), Gaps = 9/270 (3%)

Query: 84  FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
           F HL+  V    KP++     L+  LCKS +      +M  +  SG  P+A  YT ++  
Sbjct: 177 FKHLKSRV----KPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKM 232

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP- 202
             +   I   +QL  K+++ G+         +V  L   G+  ++ + +  L + G +  
Sbjct: 233 YFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRSQ 292

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           ++ +Y+ LL   +K+  +D    LL++I  +G +P+  ++ +++ GL   G T  A +  
Sbjct: 293 DIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHL 352

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +   G  PSVV+ N L+  LC  G  + A  L A M+  D      TY  ++ +L   
Sbjct: 353 ACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASMEVRD----EFTYTSVVHNLCKD 408

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
           GR   A ++L      G  + +++   +++
Sbjct: 409 GRLVCASKLLLSCYNKGMKIPSSARRAVLS 438



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKP-DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           K  R  +A+  +  +V  G +  D+     LL    K         ++E I   G+ PD 
Sbjct: 270 KTGRAEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDD 329

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             +T +VN L   GN G A + +  + E G Q   VT N L+ GLC  G ++++++L   
Sbjct: 330 YTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFAS 389

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           +  +    + FTY+ ++    K+  +  A KLL     +G +    +   +L+G+
Sbjct: 390 MEVR----DEFTYTSVVHNLCKDGRLVCASKLLLSCYNKGMKIPSSARRAVLSGI 440


>AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:5434142-5436244 FORWARD
           LENGTH=642
          Length = 642

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 215/449 (47%), Gaps = 5/449 (1%)

Query: 100 AQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL-VE 158
           A  ++L+  L ++    KA+ V     G    P ++ Y  ++  L + G      ++  E
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
              E      T+TY+ L+      G+ + +++L D +    ++P    Y+ LL   +K  
Sbjct: 223 MCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVG 282

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            V++A+ L +++   G  P + +Y  L+ GL K GR ++A   ++D+   G +P VV  N
Sbjct: 283 KVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLN 342

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL-SLHGRTEQAFEVLDEMTR 337
            L+  L   GR EE   + +EM     +P+VV+YN +I +L        +     D+M  
Sbjct: 343 NLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA 402

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQE 396
              + +  +Y+ +I   CK  +V+  +  L++M  + + P    Y + I  L +  + + 
Sbjct: 403 DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 462

Query: 397 AFFIFQSLG-NKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           A  +F+ L  N  N     Y   +I    + G    A  +  EM   G  PD Y Y++L+
Sbjct: 463 ANELFKELKENFGNVSSRVYAV-MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM 521

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
            GM + GM++EA  + R +EEN    DI+++N ++ GF +      +IE+F+ + + G  
Sbjct: 522 SGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK 581

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKEL 544
           P+ +TY  L+   A     + AA +M+E+
Sbjct: 582 PDGVTYNTLLGCFAHAGMFEEAARMMREM 610



 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 189/411 (45%), Gaps = 6/411 (1%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD    + L+    K  +   A+R+ + +  + + P    YT L+    + G +  A+ L
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            E+++  G      TY  L+KGL   G+++++      + + GL P+V   + L+    K
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK-EGRTEDAIELFRDLPAKGFSPSVV 275
              V+E   +  ++      P +VSYN ++  L + +    +    F  + A   SPS  
Sbjct: 351 VGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +Y+IL+   C   R E+A  LL EMDE+   P    Y  LI +L    R E A E+  E+
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKV 394
             +  NV++  Y  +I    K GK+   V   ++M  +   P+   YNA+ + + + G +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVI-SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
            EA  + + +  +  C       N+I +   R G    A +M   +   G  PD  TY++
Sbjct: 531 NEANSLLRKM-EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNT 589

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI--LGFCKYQRTDLS 502
           L+      GM +EA  + R +++  +  D   Y++++  +G   +++ D+S
Sbjct: 590 LLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVS 640



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 164/381 (43%), Gaps = 41/381 (10%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++  A    E M   G  P V   T+L+  L K+ +  +A    + ++  G+ PD     
Sbjct: 283 KVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLN 342

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT---VTYNTLVKGLC-SHGKLNQSLQLLDR 194
           +L+N L   G +G   +L     E G    T   V+YNT++K L  S   +++     D+
Sbjct: 343 NLMNIL---GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDK 399

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +    + P+ FTYS L++G  K   V++A+ LL+++  +G  P   +Y  L+  L K  R
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKR 459

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            E A ELF++L     + S   Y ++++     G+  EA  L  EM  +   P V  YN 
Sbjct: 460 YEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA 519

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           L++ +   G   +A  +L +M  +G      S+N I+    + G     ++  + +    
Sbjct: 520 LMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSG 579

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
             P+  TYN +                  LG    C  H             G    A +
Sbjct: 580 IKPDGVTYNTL------------------LG----CFAH------------AGMFEEAAR 605

Query: 435 MLYEMTKCGFTPDSYTYSSLV 455
           M+ EM   GF  D+ TYSS++
Sbjct: 606 MMREMKDKGFEYDAITYSSIL 626



 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 96  KPDVAQATQLLYDL-----CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNI 150
           K D    ++  Y +     CK+N+  KA+ ++E +   G  P  A Y  L+N L +    
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
             A +L ++++E+     +  Y  ++K     GKL++++ L + +  +G  P+V+ Y+ L
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           + G  K   ++EA  LL  +   G   ++ S+N++L G  + G    AIE+F  +   G 
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
            P  V+YN LL    + G +EEA  ++ EM ++      +TY+ ++ ++
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV 629



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           +SP+V++   L+ +L       +A  V  +        T+++YN +I  L +EG+ + V 
Sbjct: 160 VSPAVLSE--LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVH 217

Query: 365 QCLDQMICRRYS--PNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNC--PMHDYCKNV 419
           +   +M C      P+  TY+A+    E+ G+   A  +F  +  K NC  P       +
Sbjct: 218 EVYTEM-CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM--KDNCMQPTEKIYTTL 274

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           + +  + G    A  +  EM + G +P  YTY+ L++G+ + G +DEA   ++ +  +  
Sbjct: 275 LGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGL 334

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
            PD+   N L+    K  R +    +F  M    C P  ++Y  +++ L FE++  ++
Sbjct: 335 TPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL-FESKAHVS 391



 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 63/135 (46%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +L++A      M  +G  PDV     L+  + K+    +A  ++  +  +G   D   + 
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++N   R G    A+++ E ++  G +   VTYNTL+      G   ++ +++  +  K
Sbjct: 554 IILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDK 613

Query: 199 GLKPNVFTYSFLLEG 213
           G + +  TYS +L+ 
Sbjct: 614 GFEYDAITYSSILDA 628


>AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6666249-6668963 FORWARD
           LENGTH=904
          Length = 904

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 215/495 (43%), Gaps = 75/495 (15%)

Query: 110 CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT 169
           C++ + R AVRV + ++  G+  +      L+N  C+ G +  A Q+  ++ +   +   
Sbjct: 342 CRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDH 401

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK------------- 216
            TYNTLV G C  G ++++L+L D++ +K + P V TY+ LL+G  +             
Sbjct: 402 HTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKM 461

Query: 217 --ERGVD--------------------EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
             +RGV+                    EAMKL ++++ARG   + ++ NV+++GLCK  +
Sbjct: 462 MLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEK 521

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
             +A E+  ++      P+V +Y  L       G  +EA  +   M+ + + P++  YN 
Sbjct: 522 VNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNT 581

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI+    +    +  +++ E+   G   T  +Y  +I   C  G +D       +MI + 
Sbjct: 582 LISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKG 641

Query: 375 YSPNEGTYNAIA-MLCEQGKVQEAFFIFQSL------------------GNKQNC----- 410
            + N    + IA  L    K+ EA  + Q +                   +   C     
Sbjct: 642 ITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQK 701

Query: 411 ---------------PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG-FTPDSYTYSSL 454
                          P +      I+ LC+ G    A ++  ++     F PD YTY+ L
Sbjct: 702 IAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTIL 761

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           + G    G +++A  +   +     +P+I  YNALI G CK    D +  +  ++  KG 
Sbjct: 762 IHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGI 821

Query: 515 VPNEITYTILVEGLA 529
            PN ITY  L++GL 
Sbjct: 822 TPNAITYNTLIDGLV 836



 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 225/533 (42%), Gaps = 75/533 (14%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L  M  +G   +V   T L+   CK     +A  V E++    ++ D   Y  L++  CR
Sbjct: 284 LRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCR 343

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G I  A+++ + + E G +T T   N+L+ G C  G+L ++ Q+  R+    LKP+  T
Sbjct: 344 TGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHT 403

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG------------------ 248
           Y+ L++G  +   VDEA+KL D +  +   P +++YN+LL G                  
Sbjct: 404 YNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMML 463

Query: 249 -----------------LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
                            L K G   +A++L+ ++ A+G     ++ N+++  LC   +  
Sbjct: 464 KRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVN 523

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           EA  +L  ++     P+V TY  L       G  ++AF V + M R G   T   YN +I
Sbjct: 524 EAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLI 583

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNC 410
           +   K   ++ V   + ++  R  +P   TY A I   C  G + +A+     +  K   
Sbjct: 584 SGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGIT 643

Query: 411 PMHDYCKNVISMLCRKGNT----------------YPAFQMLYEMTKCGFT--------- 445
              + C  + + L R                     P +Q L E  +   T         
Sbjct: 644 LNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIA 703

Query: 446 -------------PDSYTYSSLVRGMCREGMLDEALEIFR-ILEENDYMPDIDNYNALIL 491
                        P++  Y+  + G+C+ G L++A ++F  +L  + ++PD   Y  LI 
Sbjct: 704 ESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIH 763

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           G       + +  +   M  KG +PN +TY  L++GL     +D A  L+ +L
Sbjct: 764 GCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKL 816



 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 210/472 (44%), Gaps = 5/472 (1%)

Query: 78  VRLNDAFLHL---EYMVGKGQKPDVAQATQLLYDLCKSNKARKA-VRVMEMIVGSGIIPD 133
           VR  + F+ L   + M+     PDV   + ++   C+S    KA V   E     G+  +
Sbjct: 201 VRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELN 260

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
              Y  L+N     G++    +++  + E G     VTY +L+KG C  G + ++  + +
Sbjct: 261 VVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFE 320

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            L +K L  +   Y  L++G  +   + +A+++ D++I  G   N    N L+ G CK G
Sbjct: 321 LLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSG 380

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           +  +A ++F  +      P   +YN L+   C  G  +EA  L  +M ++++ P+V+TYN
Sbjct: 381 QLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYN 440

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           IL+   S  G       +   M + G N    S + ++  L K G  +  ++  + ++ R
Sbjct: 441 ILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLAR 500

Query: 374 RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
               +  T N  I+ LC+  KV EA  I  ++   +  P     + +     + GN   A
Sbjct: 501 GLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEA 560

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
           F +   M + G  P    Y++L+ G  +   L++  ++   L      P +  Y ALI G
Sbjct: 561 FAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITG 620

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +C     D +      M+ KG   N    + +   L   +++D A  L++++
Sbjct: 621 WCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKI 672



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 175/356 (49%), Gaps = 12/356 (3%)

Query: 202 PNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
           P VF    ++   Y E+G V  A+ + D++   G  P+L+S N LL+ L ++G    A+ 
Sbjct: 155 PTVFD---MILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALH 211

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSL 319
           ++  + +   SP V + +I++ + C  G  ++A     E +    L  +VVTYN LI   
Sbjct: 212 VYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGY 271

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
           ++ G  E    VL  M+  G +    +Y  +I   CK+G ++      + +  ++   ++
Sbjct: 272 AMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQ 331

Query: 380 GTYNAIA-MLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
             Y  +    C  G++++A  +  ++   G + N  +   C ++I+  C+ G    A Q+
Sbjct: 332 HMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTI---CNSLINGYCKSGQLVEAEQI 388

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
              M      PD +TY++LV G CR G +DEAL++   + + + +P +  YN L+ G+ +
Sbjct: 389 FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSR 448

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLS 551
                  + +++ M+ +G   +EI+ + L+E L    + + A  L + +  R +L+
Sbjct: 449 IGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLT 504



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 179/431 (41%), Gaps = 50/431 (11%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
            +D     + M+ +G   D    + LL  L K     +A+++ E ++  G++ D      
Sbjct: 452 FHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNV 511

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           +++ LC+   +  A ++++ V     +    TY  L  G    G L ++  + + + +KG
Sbjct: 512 MISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 571

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           + P +  Y+ L+ GA+K R +++   L+ ++ ARG  P + +Y  L+TG C  G  + A 
Sbjct: 572 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL-------------- 305
               ++  KG + +V   + +  SL    + +EA  LL ++ + DL              
Sbjct: 632 ATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEA 691

Query: 306 ------------------------SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG-F 340
                                    P+ + YN+ I  L   G+ E A ++  ++  S  F
Sbjct: 692 SATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRF 751

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFF 399
                +Y  +I      G ++      D+M  +   PN  TYNA I  LC+ G V  A  
Sbjct: 752 IPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQR 811

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +   L  K   P       +I  L + GN   A ++  +M + G          LVRG  
Sbjct: 812 LLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKG----------LVRGSD 861

Query: 460 REGMLDEALEI 470
           ++G +D   E+
Sbjct: 862 KQGDVDIPKEV 872



 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 109 LCKSNKARKAVRVMEMIVGSG-IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQT 167
           LCK+ K   A ++   ++ S   IPD   YT L++     G+I  A  L +++   G   
Sbjct: 729 LCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIP 788

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
             VTYN L+KGLC  G ++++ +LL +L +KG+ PN  TY+ L++G  K   V EAM+L 
Sbjct: 789 NIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLK 848

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
           + +I +G          L+ G  K+G  +   E+  D   K  S  V+  N
Sbjct: 849 EKMIEKG----------LVRGSDKQGDVDIPKEVVLDPEVKLGSTGVIEMN 889



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 148/349 (42%), Gaps = 45/349 (12%)

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           EL R      FSP+V  ++++L+    +G  + A  +   M      PS+++ N L+++L
Sbjct: 143 ELVRVFKEFSFSPTV--FDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNL 200

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV--------------- 364
              G    A  V D+M     +    + + ++   C+ G VD  +               
Sbjct: 201 VRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELN 260

Query: 365 ---------------------QCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQ 402
                                + L  M  R  S N  TY + I   C++G ++EA  +F+
Sbjct: 261 VVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFE 320

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
            L  K+          ++   CR G    A ++   M + G   ++   +SL+ G C+ G
Sbjct: 321 LLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSG 380

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            L EA +IF  + +    PD   YN L+ G+C+    D ++++  +M  K  VP  +TY 
Sbjct: 381 QLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYN 440

Query: 523 ILVEGL----AFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEF 567
           IL++G     AF + L +   ++K     + +S ST+  L   + L +F
Sbjct: 441 ILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTL--LEALFKLGDF 487


>AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18694316-18695734 REVERSE
           LENGTH=472
          Length = 472

 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 169/314 (53%), Gaps = 7/314 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKA-VRVMEMIVGSGIIPDA 134
           +E +LN AF   + M   G  P VA    L+  LC+++    A +++   +   G  PD+
Sbjct: 133 EENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDS 192

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  L++ LCR G I  A +L  ++ E       VTY +L+ GLC    ++++++ L+ 
Sbjct: 193 YTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  KG++PNVFTYS L++G  K+    +AM+L + ++ARG  PN+V+Y  L+TGLCKE +
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            ++A+EL   +  +G  P    Y  ++   C   ++ EA   L EM    ++P+ +T+NI
Sbjct: 313 IQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNI 372

Query: 315 LITSLSLHGR------TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
            + + +   R        +AF +   M   G +V   +   ++  LCK+G+    VQ +D
Sbjct: 373 HVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVD 432

Query: 369 QMICRRYSPNEGTY 382
           +++     P++GT+
Sbjct: 433 EIVTDGCIPSKGTW 446



 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 10/345 (2%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH-GKLNQSLQ 190
           P    Y  ++  L     +  A +  + + E G      + N L+K LC + G ++  L+
Sbjct: 119 PSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLK 178

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           +   + K+G  P+ +TY  L+ G  +   +DEA KL  +++ +   P +V+Y  L+ GLC
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLC 238

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
                ++A+    ++ +KG  P+V +Y+ L+  LC +GR  +A  L   M      P++V
Sbjct: 239 GSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV 298

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TY  LIT L    + ++A E+LD M   G    A  Y  +I+  C   K       LD+M
Sbjct: 299 TYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358

Query: 371 ICRRYSPNEGTYN--------AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
           I    +PN  T+N         +  LC       AF ++ S+ ++      +  ++++  
Sbjct: 359 ILGGITPNRLTWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKC 417

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
           LC+KG    A Q++ E+   G  P   T+  L+     + ++ EA
Sbjct: 418 LCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEA 462



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 191/411 (46%), Gaps = 16/411 (3%)

Query: 127 GSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN 186
            +G + D + + ++V  L        A  L+ +++    +   V+ + L+     +G+++
Sbjct: 44  ANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMK---IENCVVSEDILLSICRGYGRVH 100

Query: 187 Q---SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           +   SL++  ++      P+   Y  +L    +E  ++ A K   ++   G  P + S N
Sbjct: 101 RPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLN 160

Query: 244 VLLTGLCKEGRTEDA-IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           VL+  LC+   T DA +++F ++P +G  P   +Y  L+  LC  GR +EA  L  EM E
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE 220

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
           +D +P+VVTY  LI  L      ++A   L+EM   G      +Y+ ++  LCK+G+   
Sbjct: 221 KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQ 280

Query: 363 VVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
            ++  + M+ R   PN  TY   I  LC++ K+QEA  +   +  +   P       VIS
Sbjct: 281 AMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVIS 340

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTY-------SSLVRGMCREGMLDEALEIFRIL 474
             C       A   L EM   G TP+  T+       + +VRG+C       A  ++  +
Sbjct: 341 GFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLC-ANYPSRAFTLYLSM 399

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
                  +++   +L+   CK      ++++   +V  GC+P++ T+ +L+
Sbjct: 400 RSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 8/245 (3%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+++A      MV K   P V   T L+  LC S    +A+R +E +   GI P+   Y+
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++ LC+ G    AM+L E +   G +   VTY TL+ GLC   K+ ++++LLDR+  +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV-------LLTGLCK 251
           GLKP+   Y  ++ G        EA   LD++I  G  PN +++N+       ++ GLC 
Sbjct: 327 GLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCA 386

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
              +  A  L+  + ++G S  V +   L++ LC +G +++A  L+ E+  +   PS  T
Sbjct: 387 NYPSR-AFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGT 445

Query: 312 YNILI 316
           + +LI
Sbjct: 446 WKLLI 450



 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 17/358 (4%)

Query: 217 ERGVDEAMKLLDDIIAR---GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
           E+ V+++M + D   A    G   +  S+  ++  L    + + A +L   +  +     
Sbjct: 26  EKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIEN---C 82

Query: 274 VVSYNILLRSLCYE-GRWE---EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           VVS +ILL S+C   GR     ++  +  +M + D  PS   Y  ++  L    +   AF
Sbjct: 83  VVSEDILL-SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAF 141

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCK-EGKVDLVVQCLDQMICRRYSPNEGTYNA-IAM 387
           +    M   G   T  S N +I  LC+ +G VD  ++   +M  R   P+  TY   I+ 
Sbjct: 142 KFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISG 201

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LC  G++ EA  +F  +  K   P      ++I+ LC   N   A + L EM   G  P+
Sbjct: 202 LCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPN 261

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            +TYSSL+ G+C++G   +A+E+F ++      P++  Y  LI G CK Q+   ++E+  
Sbjct: 262 VFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLD 321

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLK 565
           RM  +G  P+   Y  ++ G    ++   AA  + E+    +L   T +RL+    +K
Sbjct: 322 RMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM----ILGGITPNRLTWNIHVK 375



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 9/202 (4%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+ R   A    E M+ +G +P++   T L+  LCK  K ++AV +++ +   G+ 
Sbjct: 270 DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLK 329

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT-------LVKGLCSHGK 184
           PDA  Y  +++  C       A   ++++   G     +T+N        +V+GLC++  
Sbjct: 330 PDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYP 389

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
            +++  L   +  +G+   V T   L++   K+    +A++L+D+I+  G  P+  ++ +
Sbjct: 390 -SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKL 448

Query: 245 LL-TGLCKEGRTEDAIELFRDL 265
           L+   L K    E +  L RDL
Sbjct: 449 LIGHTLDKTIVGEASDTLLRDL 470


>AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2672756-2675254 REVERSE
           LENGTH=832
          Length = 832

 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 201/480 (41%), Gaps = 54/480 (11%)

Query: 102 ATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           +T L+   CK  +  KA  ++EM+    I  +   Y  L++   +   I  A QL EK+ 
Sbjct: 251 STILVVSFCKWGQVDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMR 310

Query: 162 EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN------------------ 203
             G       Y+ L+ GLC H  L  +L L   + + G+ P+                  
Sbjct: 311 RMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELS 370

Query: 204 ---------------------VF-----------TYSFL--LEGAYKERGVDEAMKLLDD 229
                                +F            YSF+  L G Y+  GV E +KLL D
Sbjct: 371 RITEVIIGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKD 430

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
              +   P+  S ++++  L K  + + A+ L  D+   G  P  + YN ++  +C EGR
Sbjct: 431 H-NKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGR 489

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            EE+  LL EM +  + PS  T N +   L+       A ++L +M   GF         
Sbjct: 490 SEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTF 549

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNE-GTYNAIAMLCEQGKVQEAFFIFQSLGNKQ 408
           ++ +LC+ G+     + LD +    +  +   +  AI  L +   V     +F+ +    
Sbjct: 550 LVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANG 609

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
           +CP       +I  LC+   T  A  +  EM   G  P   TY+S++ G C+EG +D  L
Sbjct: 610 HCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGL 669

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
                + E++  PD+  Y +LI G C   R   +I  +  M  K C PN IT+  L++GL
Sbjct: 670 SCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGL 729



 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 166/357 (46%), Gaps = 1/357 (0%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           K   PD    + ++  L K+NK   AV ++  IV +G+IP    Y +++  +C+ G    
Sbjct: 433 KAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEE 492

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           +++L+ ++++ G +    T N +   L        +L LL ++   G +P +   +FL++
Sbjct: 493 SLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVK 552

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              +     +A K LDD+   G   ++V+    + GL K    +  +ELFRD+ A G  P
Sbjct: 553 KLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCP 612

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            V++Y++L+++LC   R  EA+ L  EM  + L P+V TYN +I      G  ++    +
Sbjct: 613 DVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCI 672

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
             M     N    +Y  +I  LC  G+    +   ++M  +   PN  T+ A I  LC+ 
Sbjct: 673 VRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKC 732

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           G   EA   F+ +  K+  P      +++S      N    F +  EM   G  P S
Sbjct: 733 GWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVS 789



 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 209/501 (41%), Gaps = 22/501 (4%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE R++ AF   E M   G   D+A    L+  LCK      A+ +   I  SGI PD  
Sbjct: 295 KESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRG 354

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
               L+        +    +++  + +   ++  + Y +L +G   +  ++++   +  L
Sbjct: 355 ILGKLLCSFSEESELSRITEVI--IGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNL 412

Query: 196 T------------------KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
                               K + P+  + S ++    K   VD A+ LL DI+  G  P
Sbjct: 413 MGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIP 472

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
             + YN ++ G+CKEGR+E++++L  ++   G  PS  + N +   L     +  A  LL
Sbjct: 473 GPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLL 532

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            +M      P +     L+  L  +GR   A + LD++   GF     +    I  L K 
Sbjct: 533 KKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKN 592

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
             VD  ++    +    + P+   Y+  I  LC+  +  EA  +F  + +K   P     
Sbjct: 593 EGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATY 652

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
            ++I   C++G        +  M +    PD  TY+SL+ G+C  G   EA+  +  ++ 
Sbjct: 653 NSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKG 712

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
            D  P+   + ALI G CK   +  ++  F+ M  K   P+   Y  LV        ++ 
Sbjct: 713 KDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINA 772

Query: 537 AAGLMKELYMREVLSRSTVDR 557
             G+ +E+  +     S VDR
Sbjct: 773 GFGIFREMVHKGRFPVS-VDR 792



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 161/340 (47%), Gaps = 3/340 (0%)

Query: 74  KSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           K+ +V +    LH   +V  G  P       ++  +CK  ++ ++++++  +  +G+ P 
Sbjct: 451 KANKVDMAVTLLH--DIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPS 508

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
                 +   L  R +   A+ L++K+  +GF+        LVK LC +G+   + + LD
Sbjct: 509 QFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLD 568

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            +  +G   ++   +  ++G  K  GVD  ++L  DI A G  P++++Y+VL+  LCK  
Sbjct: 569 DVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKAC 628

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           RT +A  LF ++ +KG  P+V +YN ++   C EG  +     +  M E++ +P V+TY 
Sbjct: 629 RTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYT 688

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            LI  L   GR  +A    +EM          ++  +I  LCK G     +    +M  +
Sbjct: 689 SLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEK 748

Query: 374 RYSPNEGTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPM 412
              P+   Y ++       + +   F IF+ + +K   P+
Sbjct: 749 EMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPV 788



 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 135/575 (23%), Positives = 240/575 (41%), Gaps = 46/575 (8%)

Query: 12  ANLSAKTRRTNSSCFLYSQVLNLRTFSLNKG----FSRVLASAQISISPKDSIF------ 61
           A++ ++ R+  S   L   VLN R F ++ G    F R L +A + +    S+F      
Sbjct: 113 ASILSRARQNASLKALVVDVLNSRCF-MSPGAFGFFIRCLGNAGL-VDEASSVFDRVREM 170

Query: 62  --TLPNWRV------GKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSN 113
              +PN           +   S  V L +A   L+ M   G   D    T +L   C + 
Sbjct: 171 GLCVPNAYTYNCLLEAISKSNSSSVELVEA--RLKEMRDCGFHFDKFTLTPVLQVYCNTG 228

Query: 114 KARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           K+ +A+ V   I+  G + D    T LV   C+ G +  A +L+E +EE   +    TY 
Sbjct: 229 KSERALSVFNEILSRGWL-DEHISTILVVSFCKWGQVDKAFELIEMLEERDIRLNYKTYC 287

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            L+ G     +++++ QL +++ + G+  ++  Y  L+ G  K + ++ A+ L  +I   
Sbjct: 288 VLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRS 347

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIE-LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
           G  P+      LL    +E       E +  D+  K     ++ Y  L           E
Sbjct: 348 GIPPDRGILGKLLCSFSEESELSRITEVIIGDIDKKSV---MLLYKSLFEGFIRNDLVHE 404

Query: 293 A----NGLLAEMDEEDLS--------------PSVVTYNILITSLSLHGRTEQAFEVLDE 334
           A      L+   + + +S              P   + +I+I  L    + + A  +L +
Sbjct: 405 AYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHD 464

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGK 393
           + ++G       YN II  +CKEG+ +  ++ L +M      P++ T N I   L E+  
Sbjct: 465 IVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCD 524

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
              A  + + +      P   +   ++  LC  G    A + L ++   GF       ++
Sbjct: 525 FVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTA 584

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
            + G+ +   +D  LE+FR +  N + PD+  Y+ LI   CK  RT  +  +F  MV+KG
Sbjct: 585 AIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKG 644

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
             P   TY  +++G   E E+D     +  +Y  E
Sbjct: 645 LKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDE 679



 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 126/266 (47%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ M   G +P +   T L+  LC++ +A  A + ++ + G G +      T  ++ L +
Sbjct: 532 LKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIK 591

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
              +   ++L   +  +G     + Y+ L+K LC   +  ++  L + +  KGLKP V T
Sbjct: 592 NEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVAT 651

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++G  KE  +D  +  +  +      P++++Y  L+ GLC  GR  +AI  + ++ 
Sbjct: 652 YNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMK 711

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            K   P+ +++  L++ LC  G   EA     EM+E+++ P    Y  L++S        
Sbjct: 712 GKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENIN 771

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIA 352
             F +  EM   G    +   N ++A
Sbjct: 772 AGFGIFREMVHKGRFPVSVDRNYMLA 797



 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 107/239 (44%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R  DA  +L+ + G+G    +  +T  +  L K+    + + +   I  +G  PD   Y 
Sbjct: 559 RAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYH 618

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+  LC+      A  L  ++   G +    TYN+++ G C  G++++ L  + R+ + 
Sbjct: 619 VLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYED 678

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
              P+V TY+ L+ G        EA+   +++  +   PN +++  L+ GLCK G + +A
Sbjct: 679 EKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEA 738

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           +  FR++  K   P    Y  L+ S           G+  EM  +   P  V  N ++ 
Sbjct: 739 LVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLA 797



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 73/172 (42%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  R  +A +    MV KG KP VA    ++   CK  +  + +  +  +      PD  
Sbjct: 626 KACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVI 685

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L++ LC  G    A+    +++        +T+  L++GLC  G   ++L     +
Sbjct: 686 TYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREM 745

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
            +K ++P+   Y  L+        ++    +  +++ +G  P  V  N +L 
Sbjct: 746 EEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLA 797


>AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 216/474 (45%), Gaps = 9/474 (1%)

Query: 76  KEVRLNDAFLHLEYMVGK-GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +E ++N A L L Y V + G  P       LL ++ + +    A   +E ++  G   +A
Sbjct: 213 RERKVNMA-LKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNA 271

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
           A  +  +   C  G      +L+  ++ +G +   V +   +  LC  G L ++  +L +
Sbjct: 272 AVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFK 331

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           L   G+  +  + S +++G  K    +EA+KL+     R   PN+  Y+  L+ +C  G 
Sbjct: 332 LKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGD 388

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
              A  +F+++   G  P  V Y  ++   C  GR ++A      + +    PS+ T  I
Sbjct: 389 MLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTI 448

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI + S  G    A  V   M   G  +   +YN ++    K  +++ V + +D+M    
Sbjct: 449 LIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAG 508

Query: 375 YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
            SP+  TYN  I  +  +G + EA  I   L  +   P      +VI    ++G+   AF
Sbjct: 509 ISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAF 568

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            + + M      PD  T S+L+ G C+   +++A+ +F  L +    PD+  YN LI G+
Sbjct: 569 ILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGY 628

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILV---EGLAFENELDIAAGLMKEL 544
           C     + + E+   MV +G +PNE T+  LV   EG  F N    A+ L++E+
Sbjct: 629 CSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEGKRFVNSETHASMLLEEI 682



 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/454 (19%), Positives = 186/454 (40%), Gaps = 69/454 (15%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           K+N +L+L  ++ + G+ P+      LL+   +  G++ A + ++ +++RG   N    +
Sbjct: 216 KVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLS 275

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD-- 301
           + +   C +G  +   EL   +   G  P +V++ + +  LC  G  +EA  +L ++   
Sbjct: 276 LFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLF 335

Query: 302 ----------------------EED--------LSPSVVTYNILITSLSLHGRTEQAFEV 331
                                 EE         L P++  Y+  ++++   G   +A  +
Sbjct: 336 GISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTI 395

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
             E+   G       Y  +I   C  G+ D   Q    ++     P+  T   +   C +
Sbjct: 396 FQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSR 455

Query: 392 -GKVQEAFFIFQSLGNK--------QNCPMHDYCKN------------------------ 418
            G + +A  +F+++  +         N  MH Y K                         
Sbjct: 456 FGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVAT 515

Query: 419 ---VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
              +I  +  +G    A +++ E+ + GF P +  ++ ++ G  + G   EA  ++  + 
Sbjct: 516 YNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMA 575

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           +    PD+   +AL+ G+CK QR + +I +F ++++ G  P+ + Y  L+ G     +++
Sbjct: 576 DLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635

Query: 536 IAAGLMKELYMREVL-SRSTVDRLSMQYDLKEFT 568
            A  L+  +  R +L + ST   L +  + K F 
Sbjct: 636 KACELIGLMVQRGMLPNESTHHALVLGLEGKRFV 669



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK     +AF+   YM     KPDV   + LL+  CK+ +  KA+ +   ++ +G+ PD 
Sbjct: 559 SKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDV 618

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL 179
             Y  L++  C  G+I  A +L+  + + G      T++ LV GL
Sbjct: 619 VLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGL 663


>AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 216/474 (45%), Gaps = 9/474 (1%)

Query: 76  KEVRLNDAFLHLEYMVGK-GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +E ++N A L L Y V + G  P       LL ++ + +    A   +E ++  G   +A
Sbjct: 213 RERKVNMA-LKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNA 271

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
           A  +  +   C  G      +L+  ++ +G +   V +   +  LC  G L ++  +L +
Sbjct: 272 AVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFK 331

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           L   G+  +  + S +++G  K    +EA+KL+     R   PN+  Y+  L+ +C  G 
Sbjct: 332 LKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGD 388

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
              A  +F+++   G  P  V Y  ++   C  GR ++A      + +    PS+ T  I
Sbjct: 389 MLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTI 448

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI + S  G    A  V   M   G  +   +YN ++    K  +++ V + +D+M    
Sbjct: 449 LIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAG 508

Query: 375 YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
            SP+  TYN  I  +  +G + EA  I   L  +   P      +VI    ++G+   AF
Sbjct: 509 ISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAF 568

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
            + + M      PD  T S+L+ G C+   +++A+ +F  L +    PD+  YN LI G+
Sbjct: 569 ILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGY 628

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILV---EGLAFENELDIAAGLMKEL 544
           C     + + E+   MV +G +PNE T+  LV   EG  F N    A+ L++E+
Sbjct: 629 CSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEGKRFVNSETHASMLLEEI 682



 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/454 (19%), Positives = 186/454 (40%), Gaps = 69/454 (15%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           K+N +L+L  ++ + G+ P+      LL+   +  G++ A + ++ +++RG   N    +
Sbjct: 216 KVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLS 275

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD-- 301
           + +   C +G  +   EL   +   G  P +V++ + +  LC  G  +EA  +L ++   
Sbjct: 276 LFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLF 335

Query: 302 ----------------------EED--------LSPSVVTYNILITSLSLHGRTEQAFEV 331
                                 EE         L P++  Y+  ++++   G   +A  +
Sbjct: 336 GISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTI 395

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
             E+   G       Y  +I   C  G+ D   Q    ++     P+  T   +   C +
Sbjct: 396 FQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSR 455

Query: 392 -GKVQEAFFIFQSLGNK--------QNCPMHDYCKN------------------------ 418
            G + +A  +F+++  +         N  MH Y K                         
Sbjct: 456 FGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVAT 515

Query: 419 ---VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
              +I  +  +G    A +++ E+ + GF P +  ++ ++ G  + G   EA  ++  + 
Sbjct: 516 YNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMA 575

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           +    PD+   +AL+ G+CK QR + +I +F ++++ G  P+ + Y  L+ G     +++
Sbjct: 576 DLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635

Query: 536 IAAGLMKELYMREVL-SRSTVDRLSMQYDLKEFT 568
            A  L+  +  R +L + ST   L +  + K F 
Sbjct: 636 KACELIGLMVQRGMLPNESTHHALVLGLEGKRFV 669



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK     +AF+   YM     KPDV   + LL+  CK+ +  KA+ +   ++ +G+ PD 
Sbjct: 559 SKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDV 618

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL 179
             Y  L++  C  G+I  A +L+  + + G      T++ LV GL
Sbjct: 619 VLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGL 663


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 218/472 (46%), Gaps = 31/472 (6%)

Query: 102 ATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           A+ ++  L +  K   A R+ E     G       ++ L++   R G    A+ +   ++
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295

Query: 162 EHGFQTGTVTYNTLVKGLCSHG--KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG 219
           E+G +   VTYN ++   C  G  +  Q  +  D + + G++P+  T++ LL    +   
Sbjct: 296 EYGLRPNLVTYNAVIDA-CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGL 354

Query: 220 VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI 279
            + A  L D++  R  E ++ SYN LL  +CK G+ + A E+   +P K   P+VVSY+ 
Sbjct: 355 WEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           ++      GR++EA  L  EM    ++   V+YN L++  +  GR+E+A ++L EM   G
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG----KVQ 395
                 +YN ++    K+GK D V +   +M      PN  TY+ +     +G    +  
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
           E F  F+S G + +  ++     +I  LC+ G    A  ++ EMTK G +P+  TY+S++
Sbjct: 535 EIFREFKSAGLRADVVLYSA---LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591

Query: 456 RGMCREGMLDEALE------------IFRILEENDYMPDIDNYNALILGF-------CKY 496
               R   +D + +                L E +    I  +  L           C+ 
Sbjct: 592 DAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEE 651

Query: 497 QRTDLS--IEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
              +LS  +E+F++M      PN +T++ ++   +  N  + A+ L++EL +
Sbjct: 652 GMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRL 703



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 196/441 (44%), Gaps = 41/441 (9%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPD--AACYTHLVNFLCRRGNIGYAMQLVEKV 160
           T ++ +L   N+  KAV   E  V      +      + +++ L R G +  A ++ E  
Sbjct: 200 TYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETA 259

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
              G+      ++ L+      G   +++ + + + + GL+PN+ TY+ +++   K  G+
Sbjct: 260 FAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKG-GM 318

Query: 221 D--EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
           +  +  K  D++   G +P+ +++N LL    + G  E A  LF ++  +     V SYN
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            LL ++C  G+ + A  +LA+M  + + P+VV+Y+ +I   +  GR ++A  +  EM   
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEA 397
           G  +   SYN +++   K G+ +  +  L +M       +  TYNA+     +QGK  E 
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
             +F                                    EM +    P+  TYS+L+ G
Sbjct: 499 KKVFT-----------------------------------EMKREHVLPNLLTYSTLIDG 523

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPN 517
             + G+  EA+EIFR  +      D+  Y+ALI   CK      ++ +   M  +G  PN
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583

Query: 518 EITYTILVEGLAFENELDIAA 538
            +TY  +++       +D +A
Sbjct: 584 VVTYNSIIDAFGRSATMDRSA 604



 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 151/326 (46%), Gaps = 21/326 (6%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            + M  +  + DV     LL  +CK  +   A  ++  +    I+P+   Y+ +++   +
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G    A+ L  ++   G     V+YNTL+      G+  ++L +L  +   G+K +V T
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ LL G  K+   DE  K+  ++      PNL++Y+ L+ G  K G  ++A+E+FR+  
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
           + G    VV Y+ L+ +LC  G    A  L+ EM +E +SP+VVTYN +I +       +
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601

Query: 327 QAFE------------VLDEMTRSG-------FNVTATSYNPIIARLCKEGKVDL--VVQ 365
           ++ +             L  +T +        F    T  N    + C+EG  +L  +++
Sbjct: 602 RSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILE 661

Query: 366 CLDQMICRRYSPNEGTYNAIAMLCEQ 391
              +M      PN  T++AI   C +
Sbjct: 662 VFRKMHQLEIKPNVVTFSAILNACSR 687



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 35/309 (11%)

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           + +++ L + G+   A  +F    A G+  +V +++ L+ +    G  EEA  +   M E
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 303 EDLSPSVVTYNILITSLSLHG-RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
             L P++VTYN +I +    G   +Q  +  DEM R+G      ++N ++A   + G  +
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356

Query: 362 LVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
                 D+M  RR   +  +YN +                                  + 
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTL----------------------------------LD 382

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            +C+ G    AF++L +M      P+  +YS+++ G  + G  DEAL +F  +       
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIAL 442

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
           D  +YN L+  + K  R++ +++I + M + G   + +TY  L+ G   + + D    + 
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502

Query: 542 KELYMREVL 550
            E+    VL
Sbjct: 503 TEMKREHVL 511



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 103/245 (42%), Gaps = 34/245 (13%)

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           +I++L  +G+   A  + +     G+  T  +++ +I+   + G  +  +   + M    
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
             PN  TYNA+   C +G ++           KQ     D                    
Sbjct: 299 LRPNLVTYNAVIDACGKGGME----------FKQVAKFFD-------------------- 328

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
              EM + G  PD  T++SL+    R G+ + A  +F  +       D+ +YN L+   C
Sbjct: 329 ---EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL-YMREVLSRS 553
           K  + DL+ EI  +M  K  +PN ++Y+ +++G A     D A  L  E+ Y+   L R 
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445

Query: 554 TVDRL 558
           + + L
Sbjct: 446 SYNTL 450



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 33/311 (10%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +K  R  +A   L  M   G K DV     LL    K  K  +  +V   +    ++P+ 
Sbjct: 455 TKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNL 514

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y+ L++   + G    AM++  + +  G +   V Y+ L+  LC +G +  ++ L+D 
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574

Query: 195 LTKKGLKPNVFTYSFLLEG----AYKERGVD-----------EAMKLLDD-----IIARG 234
           +TK+G+ PNV TY+ +++     A  +R  D            A+  L +     +I   
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLF 634

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDA--IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
           G+    S N   T  C+EG  E +  +E+FR +      P+VV+++ +L +      +E+
Sbjct: 635 GQLTTESNN-RTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFED 693

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE----QAFEVLDEMTRSGFNVTATSYN 348
           A+ LL E+   D     V + +L+      G+ E    QA  + D++     +  +  YN
Sbjct: 694 ASMLLEELRLFDNKVYGVVHGLLM------GQRENVWLQAQSLFDKVNEMDGSTASAFYN 747

Query: 349 PIIARLCKEGK 359
            +   L   G+
Sbjct: 748 ALTDMLWHFGQ 758



 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 119/286 (41%), Gaps = 23/286 (8%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D  +K  R ++A      M   G   D      LL    K  ++ +A+ ++  +   GI 
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D   Y  L+    ++G      ++  +++        +TY+TL+ G    G   +++++
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
                  GL+ +V  YS L++   K   V  A+ L+D++   G  PN+V+YN ++    +
Sbjct: 537 FREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSY--------------------NILLRSLCYEGRWE 291
              T D    + +  +  FS S +S                     N      C EG  E
Sbjct: 597 SA-TMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQE 655

Query: 292 EANGL--LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            +  L    +M + ++ P+VVT++ ++ + S     E A  +L+E+
Sbjct: 656 LSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701


>AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3948886-3950859 FORWARD
           LENGTH=657
          Length = 657

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 215/444 (48%), Gaps = 16/444 (3%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G   +V     ++Y  CK +K  +A+ V   ++  G+ P+   +  +++  C+ G++ +A
Sbjct: 213 GYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFA 272

Query: 154 MQLVEKVEEHGFQTG------TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           +QL+ K+   G  +G       VTYN+++ G C  G+L+ + ++   + K G+  N  TY
Sbjct: 273 LQLLGKM---GMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTY 329

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
             L++   +    DEA++L D++ ++G   N V YN ++  L  EG  E A+ + RD+ +
Sbjct: 330 GALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNS 389

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           K       +  I++R LC  G  +EA     ++ E+ L   +V +N L+       +   
Sbjct: 390 KNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFVRDKKLAC 449

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
           A ++L  M   G ++ A S+  +I    KEGK++  ++  D MI    + N   YN+I  
Sbjct: 450 ADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVN 509

Query: 388 -LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF-- 444
            L ++G    A  +  ++  K     +     +++   + GN   A  +L +M K     
Sbjct: 510 GLSKRGMAGAAEAVVNAMEIKDIVTYN----TLLNESLKTGNVEEADDILSKMQKQDGEK 565

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
           +    T++ ++  +C+ G  ++A E+ + + E   +PD   Y  LI  F K++  +  +E
Sbjct: 566 SVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRSQEKVVE 625

Query: 505 IFQRMVNKGCVPNEITYTILVEGL 528
           +   ++ +G  P+E  Y  +V  L
Sbjct: 626 LHDYLILQGVTPHEHIYLSIVRPL 649



 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 186/402 (46%), Gaps = 12/402 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRV---MEMIVGSGIIP 132
           KE +L +A      M+  G  P+V     ++   CK+   R A+++   M M+ G+ + P
Sbjct: 230 KESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSP 289

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           +A  Y  ++N  C+ G +  A ++   + + G      TY  LV      G  +++L+L 
Sbjct: 290 NAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLC 349

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           D +T KGL  N   Y+ ++   + E  ++ AM +L D+ ++  + +  +  +++ GLC+ 
Sbjct: 350 DEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRN 409

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G  ++A+E  R +  K     +V +N L+     + +   A+ +L  M  + LS   +++
Sbjct: 410 GYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISF 469

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
             LI      G+ E+A E+ D M +         YN I+  L K G        ++ M  
Sbjct: 470 GTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAMEI 529

Query: 373 RRYSPNEGTYNAIA-MLCEQGKVQEAFFIF---QSLGNKQNCPMHDYCKNVISMLCRKGN 428
           +       TYN +     + G V+EA  I    Q    +++  +  +   +I+ LC+ G+
Sbjct: 530 KDIV----TYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVSLVTF-NIMINHLCKFGS 584

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
              A ++L  M + G  PDS TY +L+    +    ++ +E+
Sbjct: 585 YEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRSQEKVVEL 626



 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/518 (23%), Positives = 231/518 (44%), Gaps = 27/518 (5%)

Query: 40  NKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDV 99
           N   SRVL   +   SPK ++    NW +  N     E R   + + +  +VG  +  D 
Sbjct: 57  NPLISRVLR--EFRSSPKLAL-EFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDD- 112

Query: 100 AQATQLLYDLCKSNKAR-KAVRVMEMIVGS----GIIPDAACYTHLVNFLCRRGNIGYAM 154
             A  ++ +L      +   + V+  ++ S    G  PD   +  LV    + G+   A 
Sbjct: 113 --ALSIMANLMSVEGEKLSPLHVLSGLIRSYQACGSSPDV--FDSLVRACTQNGDAQGAY 168

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
           +++E+    GF       N  +  L +  ++++  ++   +   G   NV T++ ++   
Sbjct: 169 EVIEQTRAEGFCVSVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSF 228

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD---LPAKGFS 271
            KE  + EA+ +   ++  G  PN+VS+N+++ G CK G    A++L      +     S
Sbjct: 229 CKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVS 288

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P+ V+YN ++   C  GR + A  +  +M +  +  +  TY  L+ +    G +++A  +
Sbjct: 289 PNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRL 348

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCE 390
            DEMT  G  V    YN I+  L  EG ++  +  L  M  +    +  T   +   LC 
Sbjct: 349 CDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCR 408

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
            G V+EA   FQ   +++       C N ++    R      A Q+L  M   G + D+ 
Sbjct: 409 NGYVKEA-VEFQRQISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAI 467

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           ++ +L+ G  +EG L+ ALEI+  + + +   ++  YN+++ G  K      +    + +
Sbjct: 468 SFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAA----EAV 523

Query: 510 VNKGCVPNEITY-TILVEGLA---FENELDIAAGLMKE 543
           VN   + + +TY T+L E L     E   DI + + K+
Sbjct: 524 VNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQ 561



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 125/270 (46%), Gaps = 6/270 (2%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L  M  K  + D      ++  LC++   ++AV     I    ++ D  C+  L++   R
Sbjct: 384 LRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFVR 443

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
              +  A Q++  +   G     +++ TL+ G    GKL ++L++ D + K     N+  
Sbjct: 444 DKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVI 503

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ ++ G  K RG+  A + + + +      ++V+YN LL    K G  E+A ++   + 
Sbjct: 504 YNSIVNGLSK-RGMAGAAEAVVNAMEI---KDIVTYNTLLNESLKTGNVEEADDILSKMQ 559

Query: 267 AKGFSPSV--VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
            +    SV  V++NI++  LC  G +E+A  +L  M E  + P  +TY  LITS S H  
Sbjct: 560 KQDGEKSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRS 619

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            E+  E+ D +   G       Y  I+  L
Sbjct: 620 QEKVVELHDYLILQGVTPHEHIYLSIVRPL 649


>AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22768974-22771274 REVERSE
           LENGTH=766
          Length = 766

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 212/464 (45%), Gaps = 45/464 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG------IIP 132
           R+ND  L ++ +     +PDV     L+  LCKS +  +A+ V E + G        I  
Sbjct: 312 RMNDLVLKMDEV---KIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKA 368

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           D+  +  L++ LC+ G +  A +L+ +++ E       VTYN L+ G C  GKL  + ++
Sbjct: 369 DSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEV 428

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           + R+ +  +KPNV T + ++ G  +  G++ A+    D+   G + N+V+Y  L+   C 
Sbjct: 429 VSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCS 488

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               E A+  +  +   G SP    Y  L+  LC   R  +A  ++ ++ E   S  ++ 
Sbjct: 489 VSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLA 548

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN+LI        TE+ +E+L +M + G    + +YN +I+   K    + V + ++QM 
Sbjct: 549 YNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMR 608

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
                P   TY A I   C  G++ EA  +F+ +G      +H                 
Sbjct: 609 EDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG------LHS---------------- 646

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
                          P++  Y+ L+    + G   +AL +   ++     P+++ YNAL 
Sbjct: 647 ------------KVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
               +  + +  +++   MV + C PN+IT  IL+E L+  +EL
Sbjct: 695 KCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDEL 738



 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 227/485 (46%), Gaps = 17/485 (3%)

Query: 80  LNDAFLHLEYMVGKGQ--KPDVAQATQLLYDLCKSN--KARKAVRVMEMIVGSGIIPDAA 135
           ++DAF  L+ M+ K     P+   A  +L+++ K       K + ++      G+ P++ 
Sbjct: 201 VDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIALISRFSSHGVSPNSV 260

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
             T  ++ LC+      A  ++  + ++        +N L+  L  +  +++   L+ ++
Sbjct: 261 WLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVS-----YNVLLTGL 249
            +  ++P+V T   L+    K R VDEA+++ + +   R  + N++      +N L+ GL
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 250 CKEGRTEDAIELF-RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           CK GR ++A EL  R    +  +P+ V+YN L+   C  G+ E A  +++ M E+++ P+
Sbjct: 381 CKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPN 440

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           VVT N ++  +  H     A     +M + G      +Y  +I   C    V+  +   +
Sbjct: 441 VVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYE 500

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC--KNVISMLCR 425
           +M+    SP+   Y A I+ LC+  +  +A  + + L  K+     D      +I + C 
Sbjct: 501 KMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL--KEGGFSLDLLAYNMLIGLFCD 558

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
           K NT   ++ML +M K G  PDS TY++L+    +    +    +   + E+   P +  
Sbjct: 559 KNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTT 618

Query: 486 YNALILGFCKYQRTDLSIEIFQRM-VNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           Y A+I  +C     D ++++F+ M ++    PN + Y IL+   +       A  L +E+
Sbjct: 619 YGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEM 678

Query: 545 YMREV 549
            M+ V
Sbjct: 679 KMKMV 683



 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 208/503 (41%), Gaps = 68/503 (13%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL-VNFLCRRGNIGY 152
           G +PD       LY++ K                   IP     T+L + +  R G +  
Sbjct: 127 GSEPDPRDKLLRLYEIAKEKN----------------IPLTVVATNLLIRWFGRMGMVNQ 170

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFL 210
           ++ + E+++ +     +   N +V  L  +G ++ + ++LD + +K     PN  T   +
Sbjct: 171 SVLVYERLDSN--MKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIV 228

Query: 211 LEGAYKERGVDEA--MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
           L   +K R + E   + L+    + G  PN V     ++ LCK  R   A ++  DL   
Sbjct: 229 LHEVWKGRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKN 288

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
                   +N LL  L         N L+ +MDE  + P VVT  ILI +L    R ++A
Sbjct: 289 KTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEA 348

Query: 329 FEVLDEM----TRSGFNVTATS--YNPIIARLCKEGKVDLVVQCLDQM-ICRRYSPNEGT 381
            EV ++M    T  G  + A S  +N +I  LCK G++    + L +M +  R +PN  T
Sbjct: 349 LEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVT 408

Query: 382 YNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCR--------------- 425
           YN  I   C  GK++ A  +   +   +  P       ++  +CR               
Sbjct: 409 YNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDME 468

Query: 426 ----KGNTYPAFQMLY----------------EMTKCGFTPDSYTYSSLVRGMCREGMLD 465
               KGN      +++                +M + G +PD+  Y +L+ G+C+     
Sbjct: 469 KEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           +A+ +   L+E  +  D+  YN LI  FC    T+   E+   M  +G  P+ ITY  L+
Sbjct: 529 DAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLI 588

Query: 526 EGLAFENELDIAAGLMKELYMRE 548
                  + +    +M++  MRE
Sbjct: 589 SFFGKHKDFESVERMMEQ--MRE 609


>AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4731056-4733707 REVERSE
           LENGTH=883
          Length = 883

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 182/400 (45%), Gaps = 8/400 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  +V  LC    I  A  +V  +E+HG       Y+ +++G   +  + +++ + +++ 
Sbjct: 294 YRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKML 353

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           KK  + N    S +L+   +     EA  L  +        + V YNV    L K G+ E
Sbjct: 354 KKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVE 413

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +AIELFR++  KG +P V++Y  L+   C +G+  +A  L+ EMD    +P +V YN+L 
Sbjct: 414 EAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLA 473

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             L+ +G  ++AFE L  M   G   T  ++N +I  L   G++D      + +    + 
Sbjct: 474 GGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESL---EHK 530

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
             E   + +   C  G +  AF  F  L  +   P   Y     S+   K     A  +L
Sbjct: 531 SRENDASMVKGFCAAGCLDHAFERFIRL--EFPLPKSVYFTLFTSLCAEKDYISKAQDLL 588

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
             M K G  P+   Y  L+   CR   + +A E F IL     +PD+  Y  +I  +C+ 
Sbjct: 589 DRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRL 648

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
                +  +F+ M  +   P+ +TY++L+     + ELD+
Sbjct: 649 NEPKQAYALFEDMKRRDVKPDVVTYSVLLNS---DPELDM 685



 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 194/456 (42%), Gaps = 24/456 (5%)

Query: 77  EVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           E+R+ DA   +  M   G  PDV   + ++    K+    KAV V   ++      +   
Sbjct: 304 EMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVI 363

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
            + ++   C+ GN   A  L ++  E       V YN     L   GK+ ++++L   +T
Sbjct: 364 VSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMT 423

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            KG+ P+V  Y+ L+ G   +    +A  L+ ++   G  P++V YNVL  GL   G  +
Sbjct: 424 GKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQ 483

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD----EEDLSPSVVTY 312
           +A E  + +  +G  P+ V++N+++  L   G  ++A      ++    E D S      
Sbjct: 484 EAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKSRENDAS------ 537

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK-VDLVVQCLDQMI 371
             ++      G  + AFE      R  F +  + Y  +   LC E   +      LD+M 
Sbjct: 538 --MVKGFCAAGCLDHAFE---RFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQDLLDRMW 592

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
                P +  Y   I   C    V++A   F+ L  K+  P       +I+  CR     
Sbjct: 593 KLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPK 652

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A+ +  +M +    PD  TYS L+         D  L++ R +E  D +PD+  Y  +I
Sbjct: 653 QAYALFEDMKRRDVKPDVVTYSVLLNS-------DPELDMKREMEAFDVIPDVVYYTIMI 705

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
             +C          +F+ M  +  VP+ +TYT+L++
Sbjct: 706 NRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLK 741



 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 48/483 (9%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K  ++ +A      M GKG  PDV   T L+   C   K   A  +M  + G+G  
Sbjct: 404 DALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKT 463

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   Y  L   L   G    A + ++ +E  G +   VT+N +++GL   G+L+++   
Sbjct: 464 PDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAF 523

Query: 192 LDRLTKKGLK-----------------------------PNVFTYSFLLEGAYKERGVDE 222
            + L  K  +                             P    ++       ++  + +
Sbjct: 524 YESLEHKSRENDASMVKGFCAAGCLDHAFERFIRLEFPLPKSVYFTLFTSLCAEKDYISK 583

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A  LLD +   G EP    Y  L+   C+      A E F  L  K   P + +Y I++ 
Sbjct: 584 AQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMIN 643

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS---LSLHGRTEQAFEVLDEMTRSG 339
           + C     ++A  L  +M   D+ P VVTY++L+ S   L +  R  +AF+V+ ++    
Sbjct: 644 TYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVLLNSDPELDMK-REMEAFDVIPDVV--- 699

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFF 399
                  Y  +I R C    +  V      M  R   P+  TY  +     +  +     
Sbjct: 700 ------YYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPERNLSREMK 753

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
            F         P   Y   +I   C+ G+   A ++  +M + G  PD+  Y++L+   C
Sbjct: 754 AFDVK------PDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCC 807

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           + G L EA  IF  + E+   PD+  Y ALI G C+      ++++ + M+ KG  P + 
Sbjct: 808 KMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKA 867

Query: 520 TYT 522
           + +
Sbjct: 868 SLS 870



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 173/382 (45%), Gaps = 9/382 (2%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           + Y  +V+GLC   ++  +  ++  + K G+ P+V+ YS ++EG  K   + +A+ + + 
Sbjct: 292 IAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNK 351

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           ++ +    N V  + +L   C+ G   +A +LF++      S   V YN+   +L   G+
Sbjct: 352 MLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGK 411

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            EEA  L  EM  + ++P V+ Y  LI    L G+   AF+++ EM  +G       YN 
Sbjct: 412 VEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNV 471

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQ 408
           +   L   G      + L  M  R   P   T+N  I  L + G++ +A   ++SL +K 
Sbjct: 472 LAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKS 531

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE-GMLDEA 467
                +   +++   C  G    AF+      +  F      Y +L   +C E   + +A
Sbjct: 532 ----RENDASMVKGFCAAGCLDHAFE---RFIRLEFPLPKSVYFTLFTSLCAEKDYISKA 584

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            ++   + +    P+   Y  LI  +C+      + E F+ +V K  VP+  TYTI++  
Sbjct: 585 QDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINT 644

Query: 528 LAFENELDIAAGLMKELYMREV 549
               NE   A  L +++  R+V
Sbjct: 645 YCRLNEPKQAYALFEDMKRRDV 666



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 158/377 (41%), Gaps = 40/377 (10%)

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           N L+  + + G+ +  +     + + GL  +  TY  +++  ++    +E  KLL  ++ 
Sbjct: 186 NFLISRMIASGRSDMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEKLLSRLLI 245

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF----SPSVVSYNILLRSLCYEG 288
                  V Y   + GLC    T+ A  L + L         S   ++Y  ++R LCYE 
Sbjct: 246 SETRNPCVFYLNFIEGLCLNQMTDIAYFLLQPLRDANILVDKSDLGIAYRKVVRGLCYEM 305

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           R E+A  ++ +M++  + P V  Y+ +I     +    +A +V ++M +    +     N
Sbjct: 306 RIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRI-----N 360

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ 408
            +I        V  ++QC                      C+ G   EA+ +F+    + 
Sbjct: 361 CVI--------VSSILQCY---------------------CQMGNFSEAYDLFKEF-RET 390

Query: 409 NCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
           N  +   C NV    L + G    A ++  EMT  G  PD   Y++L+ G C +G   +A
Sbjct: 391 NISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDA 450

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            ++   ++     PDI  YN L  G         + E  + M N+G  P  +T+ +++EG
Sbjct: 451 FDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEG 510

Query: 528 LAFENELDIAAGLMKEL 544
           L    ELD A    + L
Sbjct: 511 LIDAGELDKAEAFYESL 527



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 20/330 (6%)

Query: 56  PKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKA 115
           PK   FTL      + D  SK   L D    L      G +P+ +   +L+   C+ N  
Sbjct: 563 PKSVYFTLFTSLCAEKDYISKAQDLLDRMWKL------GVEPEKSMYGKLIGAWCRVNNV 616

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           RKA    E++V   I+PD   YT ++N  CR      A  L E ++    +   VTY+ L
Sbjct: 617 RKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVL 676

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
           +         +  L +   +    + P+V  Y+ ++        + +   L  D+  R  
Sbjct: 677 LNS-------DPELDMKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREI 729

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
            P++V+Y VLL       + +    L R++ A    P V  Y +L+   C  G   EA  
Sbjct: 730 VPDVVTYTVLL-------KNKPERNLSREMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKR 782

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
           +  +M E  + P    Y  LI      G  ++A  + D M  SG       Y  +IA  C
Sbjct: 783 IFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCC 842

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           + G V   V+ + +M+ +   P + + +A+
Sbjct: 843 RNGFVLKAVKLVKEMLEKGIKPTKASLSAV 872



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 68/125 (54%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPDV   T L+   CK     +A R+ + ++ SG+ PDAA YT L+   C+ G +  A  
Sbjct: 758 KPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKM 817

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           + +++ E G +   V Y  L+ G C +G + ++++L+  + +KG+KP   + S +     
Sbjct: 818 IFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAVHYAKL 877

Query: 216 KERGV 220
           K +G+
Sbjct: 878 KAKGL 882



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 172/422 (40%), Gaps = 63/422 (14%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+  ++++E +        Y T+++ +C  G   +    L  L ++G +   F+   LL+
Sbjct: 74  ALSFLKRIEGNVTLPSVQAYATVIRIVCGWGLDKKLDTFLFELVRRGDEGRGFSVMDLLK 133

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF-RDLPAKGFS 271
              +   +++++ LL           +     L+         ++AI++F R   + G +
Sbjct: 134 AIGE---MEQSLVLL-----------IRVSTALVKAYANLDMFDEAIDIFFRAYYSLGRA 179

Query: 272 PSVVSYNILLRSLCYEGR--------WE-EANGLLAEM--------------DEEDL--- 305
           P + + N L+  +   GR        WE E  GL A+               D+E+L   
Sbjct: 180 PDIKALNFLISRMIASGRSDMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEKL 239

Query: 306 ----------SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT----SYNPII 351
                     +P V   N  I  L L+  T+ A+ +L  +  +   V  +    +Y  ++
Sbjct: 240 LSRLLISETRNPCVFYLN-FIEGLCLNQMTDIAYFLLQPLRDANILVDKSDLGIAYRKVV 298

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQ-- 408
             LC E +++     +  M      P+   Y+AI     +   + +A  +F  +  K+  
Sbjct: 299 RGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKR 358

Query: 409 -NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
            NC +     +++   C+ GN   A+ +  E  +   + D   Y+     + + G ++EA
Sbjct: 359 INCVI---VSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEA 415

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           +E+FR +      PD+ NY  LI G C   +   + ++   M   G  P+ + Y +L  G
Sbjct: 416 IELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGG 475

Query: 528 LA 529
           LA
Sbjct: 476 LA 477


>AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:5368034-5369641 FORWARD
           LENGTH=535
          Length = 535

 Score =  155 bits (393), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 184/390 (47%), Gaps = 10/390 (2%)

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG-EPNLVS 241
           G+   S+++  R+   G+K +V + + LL    + +  D    +  +     G  PN+ +
Sbjct: 134 GRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFT 193

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
            N+L+  LCK+   E A ++  ++P+ G  P++V+Y  +L      G  E A  +L EM 
Sbjct: 194 CNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           +    P   TY +L+      GR  +A  V+D+M ++       +Y  +I  LCKE K  
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313

Query: 362 LVVQCLDQMICRRYSPNEG-TYNAIAMLCEQGKVQEAFFIFQSLGNKQNC-PMHDYCKNV 419
                 D+M+ R + P+       I  LCE  KV EA  +++ +  K NC P +     +
Sbjct: 314 EARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKML-KNNCMPDNALLSTL 372

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           I  LC++G    A ++  E  K G  P   TY++L+ GMC +G L EA  ++  + E   
Sbjct: 373 IHWLCKEGRVTEARKLFDEFEK-GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKC 431

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAG 539
            P+   YN LI G  K       + + + M+  GC PN+ T+ IL EGL    +L     
Sbjct: 432 KPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGL---QKLGKEED 488

Query: 540 LMKELYMREVLSRSTVDRLSMQYDLKEFTA 569
            MK + M   +    VD+ S +  LK+F  
Sbjct: 489 AMKIVSM--AVMNGKVDKESWELFLKKFAG 516



 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 209/439 (47%), Gaps = 28/439 (6%)

Query: 97  PDVAQATQLLYDLCK----SNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR--RGNI 150
           P +     L  DL +    + +   ++R+   I   G+         L+N L +  R ++
Sbjct: 114 PPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDL 173

Query: 151 GYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
            +AM    K E  G      T N LVK LC    +  + ++LD +   GL PN+ TY+ +
Sbjct: 174 VHAMFKNSK-ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTI 232

Query: 211 LEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L G Y  RG ++ A ++L++++ RG  P+  +Y VL+ G CK GR  +A  +  D+    
Sbjct: 233 L-GGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNE 291

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P+ V+Y +++R+LC E +  EA  +  EM E    P       +I +L    + ++A 
Sbjct: 292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEAC 351

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAML 388
            +  +M ++         + +I  LCKEG+V    +  D+   +   P+  TYN  IA +
Sbjct: 352 GLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIAGM 410

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           CE+G++ EA  ++  +  ++ C  + +  NV I  L + GN     ++L EM + G  P+
Sbjct: 411 CEKGELTEAGRLWDDMYERK-CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPN 469

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             T+  L  G+ + G  ++A++I  +              A++ G    +  +L ++ F 
Sbjct: 470 KTTFLILFEGLQKLGKEEDAMKIVSM--------------AVMNGKVDKESWELFLKKFA 515

Query: 508 RMVNKGCVP-NEITYTILV 525
             ++KG +P  E+ + I V
Sbjct: 516 GELDKGVLPLKELLHEISV 534



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 1/289 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P++     L+  LCK N    A +V++ I   G++P+   YT ++     RG++  A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            +++E++ + G+     TY  L+ G C  G+ +++  ++D + K  ++PN  TY  ++  
Sbjct: 246 KRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRA 305

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             KE+   EA  + D+++ R   P+      ++  LC++ + ++A  L+R +      P 
Sbjct: 306 LCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 365

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
               + L+  LC EGR  EA  L  E ++  + PS++TYN LI  +   G   +A  + D
Sbjct: 366 NALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWD 424

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           +M        A +YN +I  L K G V   V+ L++M+     PN+ T+
Sbjct: 425 DMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTF 473



 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 127/281 (45%), Gaps = 6/281 (2%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL---SLHGRT 325
           GF+ +  +Y+ +L  L     ++    L+A++      P     N+ I  L    L GR 
Sbjct: 78  GFTHNYDTYHSILFKLSRARAFDPVESLMADL-RNSYPPIKCGENLFIDLLRNYGLAGRY 136

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL-DQMICRRYSPNEGTYNA 384
           E +  +   +   G   +  S N ++  L +  + DLV     +       +PN  T N 
Sbjct: 137 ESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNL 196

Query: 385 -IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
            +  LC++  ++ A+ +   + +    P       ++     +G+   A ++L EM   G
Sbjct: 197 LVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRG 256

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           + PD+ TY+ L+ G C+ G   EA  +   +E+N+  P+   Y  +I   CK +++  + 
Sbjct: 257 WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEAR 316

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +F  M+ +  +P+      +++ L  ++++D A GL +++
Sbjct: 317 NMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKM 357


>AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:360918-363050 REVERSE
           LENGTH=710
          Length = 710

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 202/412 (49%), Gaps = 18/412 (4%)

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE-HGFQTGTVTYNT 174
           +++V++ + +   GI P    +  L++ L +RG  G A  L +++   +G    + T+NT
Sbjct: 155 QESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNT 214

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L+ G C +  ++++ ++   +      P+V TY+ +++G  +   V  A  +L  ++ + 
Sbjct: 215 LINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKA 274

Query: 235 GE--PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            +  PN+VSY  L+ G C +   ++A+ +F D+ ++G  P+ V+YN L++ L    R++E
Sbjct: 275 TDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDE 334

Query: 293 ANGLLAEMDEE--DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
              +L   ++     +P   T+NILI +    G  + A +V  EM     +  + SY+ +
Sbjct: 335 IKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVL 394

Query: 351 IARLCKEGKVDLVVQCLDQMICRRY-------SPNEGTYNAI-AMLCEQGKVQEAFFIFQ 402
           I  LC   + D      +++  +          P    YN +   LC  GK ++A  +F+
Sbjct: 395 IRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFR 454

Query: 403 SLGNK--QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
            L  +  Q+ P +   K +I+  CR+G   PA+++L  M +  F PD  TY  L+ G+ +
Sbjct: 455 QLMKRGVQDPPSY---KTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLK 511

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            G    A +  + +  + Y+P    +++++    K +  + S  +   M+ K
Sbjct: 512 IGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEK 563



 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 214/507 (42%), Gaps = 81/507 (15%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM-EMIVGSGIIPDAACYTHLVNFLC 145
            + M   G  P V     LL  L K  +   A  +  EM    G+ PD+  +  L+N  C
Sbjct: 161 FQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFC 220

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--LKPN 203
           +   +  A ++ + +E +      VTYNT++ GLC  GK+  +  +L  + KK   + PN
Sbjct: 221 KNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPN 280

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL-------------- 249
           V +Y+ L+ G   ++ +DEA+ +  D+++RG +PN V+YN L+ GL              
Sbjct: 281 VVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILI 340

Query: 250 -----------------------CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
                                  C  G  + A+++F+++      P   SY++L+R+LC 
Sbjct: 341 GGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCM 400

Query: 287 EGRWEEANGLLAEMDEEDL-------SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
              ++ A  L  E+ E+++        P    YN +   L  +G+T+QA +V  ++ + G
Sbjct: 401 RNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRG 460

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
                 SY  +I   C+EGK     + L  M+ R + P+  TY   I  L + G+   A 
Sbjct: 461 VQ-DPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAH 519

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
              Q +      P+     +V++ L ++     +F ++  M +     +    + +VR +
Sbjct: 520 DTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLL 579

Query: 459 CREGMLDEALEIFRILEENDY--------------------------------MPDIDNY 486
                 ++A  I R+L +N Y                                M DID  
Sbjct: 580 FSSAQKEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTC 639

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKG 513
           N +I G CK++R   +  ++  +V  G
Sbjct: 640 NTVIEGLCKHKRHSEAFSLYNELVELG 666



 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 191/417 (45%), Gaps = 47/417 (11%)

Query: 148 GNIGY---AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPN 203
           GN G    +++L + +++ G     +T+N+L+  L   G+   +  L D + +  G+ P+
Sbjct: 149 GNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPD 208

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
            +T++ L+ G  K   VDEA ++  D+      P++V+YN ++ GLC+ G+ + A  +  
Sbjct: 209 SYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLS 268

Query: 264 DLPAKG--FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
            +  K     P+VVSY  L+R  C +   +EA  +  +M    L P+ VTYN LI  LS 
Sbjct: 269 GMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSE 328

Query: 322 HGRTEQAFEVL----DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
             R ++  ++L    D  T   F   A ++N +I   C  G +D  ++   +M+  +  P
Sbjct: 329 AHRYDEIKDILIGGNDAFT--TFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHP 386

Query: 378 NEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           +  +Y+  I  LC + +   A  +F  L  K+     D CK                   
Sbjct: 387 DSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECK------------------- 427

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
                    P +  Y+ +   +C  G   +A ++FR L +   + D  +Y  LI G C+ 
Sbjct: 428 ---------PLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRG-VQDPPSYKTLITGHCRE 477

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
            +   + E+   M+ +  VP+  TY +L++GL     L I   L+    ++ +L  S
Sbjct: 478 GKFKPAYELLVLMLRREFVPDLETYELLIDGL-----LKIGEALLAHDTLQRMLRSS 529



 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%)

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           +N L+RS    G ++E+  L   M +  +SPSV+T+N L++ L   GRT  A ++ DEM 
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200

Query: 337 RSGFNVTATSY--NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGK 393
           R+ + VT  SY  N +I   CK   VD   +    M     +P+  TYN I   LC  GK
Sbjct: 201 RT-YGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGK 259

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISM------LCRKGNTYPAFQMLYEMTKCGFTPD 447
           V+ A  +   +  K      D   NV+S        C K     A  + ++M   G  P+
Sbjct: 260 VKIAHNVLSGMLKKAT----DVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEEND----YMPDIDNYNALILGFCKYQRTDLSI 503
           + TY++L++G+      DE  +I  ++  ND    + PD   +N LI   C     D ++
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDI--LIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAM 373

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           ++FQ M+N    P+  +Y++L+  L   NE D A  L  EL+ +EVL
Sbjct: 374 KVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVL 420



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 6/271 (2%)

Query: 70  KNDQKSKEVRLNDAFLHLEYMVGKGQ-KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           +N+    E   N+ F   E ++GK + KP  A    +   LC + K ++A +V   ++  
Sbjct: 401 RNEFDRAETLFNELF-EKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKR 459

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+  D   Y  L+   CR G    A +L+  +    F     TY  L+ GL   G+   +
Sbjct: 460 GV-QDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLA 518

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
              L R+ +    P   T+  +L    K +  +E+  L+  ++ +    N+     ++  
Sbjct: 519 HDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRL 578

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           L    + E A  + R L   G+   +V    LL  LC   +  +A+ L+    E+     
Sbjct: 579 LFSSAQKEKAFLIVRLLYDNGY---LVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVD 635

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           + T N +I  L  H R  +AF + +E+   G
Sbjct: 636 IDTCNTVIEGLCKHKRHSEAFSLYNELVELG 666


>AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10374927-10377227 FORWARD
           LENGTH=766
          Length = 766

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 211/464 (45%), Gaps = 45/464 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG------IIP 132
           R+ND  L ++ +     +PDV     L+  LCKS +  +A+ V E + G        I  
Sbjct: 312 RMNDLVLKMDEV---KIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKA 368

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           D+  +  L++ LC+ G +  A +L+ +++ E       VTYN L+ G C  GKL  + ++
Sbjct: 369 DSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEV 428

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           + R+ +  +KPNV T + ++ G  +  G++ A+    D+   G + N+V+Y  L+   C 
Sbjct: 429 VSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCS 488

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               E A+  +  +   G SP    Y  L+  LC   R  +A  ++ ++ E   S  ++ 
Sbjct: 489 VSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLA 548

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN+LI         E+ +E+L +M + G    + +YN +I+   K    + V + ++QM 
Sbjct: 549 YNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMR 608

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
                P   TY A I   C  G++ EA  +F+ +G      +H                 
Sbjct: 609 EDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG------LH----------------- 645

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
                          P++  Y+ L+    + G   +AL +   ++     P+++ YNAL 
Sbjct: 646 -----------SKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
               +  + +  +++   MV + C PN+IT  IL+E L+  +EL
Sbjct: 695 KCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDEL 738



 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 226/486 (46%), Gaps = 19/486 (3%)

Query: 80  LNDAFLHLEYMVGKGQ--KPDVAQATQLLYDLCKSN--KARKAVRVMEMIVGSGIIPDAA 135
           ++DAF  L+ M+ K     P+   A  +L+++ K       K + ++      G+ P++ 
Sbjct: 201 VDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSSHGVSPNSV 260

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
             T  ++ LC+      A  ++  + ++        +N L+  L  +  +++   L+ ++
Sbjct: 261 WLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVS-----YNVLLTGL 249
            +  ++P+V T   L+    K R VDEA+++ + +   R  + N++      +N L+ GL
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 250 CKEGRTEDAIELF-RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           CK GR ++A EL  R    +   P+ V+YN L+   C  G+ E A  +++ M E+++ P+
Sbjct: 381 CKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPN 440

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           VVT N ++  +  H     A     +M + G      +Y  +I   C    V+  +   +
Sbjct: 441 VVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYE 500

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLC 424
           +M+    SP+   Y A I+ LC+  +  +A  + + L   G   +   ++    +I + C
Sbjct: 501 KMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNM---LIGLFC 557

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
            K N    ++ML +M K G  PDS TY++L+    +    +    +   + E+   P + 
Sbjct: 558 DKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVT 617

Query: 485 NYNALILGFCKYQRTDLSIEIFQRM-VNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            Y A+I  +C     D ++++F+ M ++    PN + Y IL+   +       A  L +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677

Query: 544 LYMREV 549
           + M+ V
Sbjct: 678 MKMKMV 683



 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 185/421 (43%), Gaps = 14/421 (3%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           K +R+ E+     I         L+ +  R G +  ++ + E+++ +     +   N +V
Sbjct: 135 KLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSN--MKNSQVRNVVV 192

Query: 177 KGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFLLEGAYKERGVDEA--MKLLDDIIA 232
             L  +G ++ + ++LD + +K     PN  T   +L   +KER + E   + L+    +
Sbjct: 193 DVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSS 252

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            G  PN V     ++ LCK  R   A ++  DL           +N LL  L        
Sbjct: 253 HGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISR 312

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM----TRSGFNVTATS-- 346
            N L+ +MDE  + P VVT  ILI +L    R ++A EV ++M    T  G  + A S  
Sbjct: 313 MNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIH 372

Query: 347 YNPIIARLCKEGKVDLVVQCLDQM-ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           +N +I  LCK G++    + L +M +  R  PN  TYN  I   C  GK++ A  +   +
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRM 432

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
              +  P       ++  +CR      A     +M K G   +  TY +L+   C    +
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNV 492

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
           ++A+  +  + E    PD   Y ALI G C+ +R   +I + +++   G   + + Y +L
Sbjct: 493 EKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNML 552

Query: 525 V 525
           +
Sbjct: 553 I 553


>AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:6129255-6130775 REVERSE
           LENGTH=506
          Length = 506

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 177/375 (47%), Gaps = 38/375 (10%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           ++    LL D  + N +RK +   +  +G  + P+   +  LV   C+ G+I +A  +VE
Sbjct: 163 ISTCLNLLIDSGEVNLSRKLLLYAKHNLG--LQPNTCIFNILVKHHCKNGDINFAFLVVE 220

Query: 159 KVEEHGFQ-TGTVTYNTLVKGLCSHGKLNQSLQLL-DRLTKKGLKPNVFTYSFLLEGAYK 216
           +++  G     ++TY+TL+  L +H +  ++++L  D ++K+G+ P+  T++ ++ G  +
Sbjct: 221 EMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCR 280

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              V+ A K+LD +   G  PN+ +Y+ L+ G CK G+ ++A + F ++   G     V 
Sbjct: 281 AGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVG 340

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y  L+   C  G  +EA  LL EM         +TYN+++  LS  GR+E+A ++LD+  
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWG 400

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
             G ++   SY  I+  LC  G+++  V+ L  M  R   P+  T+N +           
Sbjct: 401 SEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNEL----------- 449

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
                                  +  LC  G T    ++L    + G  P   ++ ++V 
Sbjct: 450 -----------------------VVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVE 486

Query: 457 GMCREGMLDEALEIF 471
            +C+E  L    E+ 
Sbjct: 487 SICKERKLVHVFELL 501



 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 11/375 (2%)

Query: 2   ATLLNTVSPAANLSAKTRRTNSSCFLYSQVLNLRTFSLNKGFSRVL---ASAQISISPKD 58
           + L + V    NL     R   S    S  LNL   S     SR L   A   + + P  
Sbjct: 137 SDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNT 196

Query: 59  SIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKG-QKPDVAQATQLLYDLCKSNKARK 117
            IF +    + K+  K+ ++  N AFL +E M   G   P+    + L+  L   +++++
Sbjct: 197 CIFNI----LVKHHCKNGDI--NFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKE 250

Query: 118 AVRVME-MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           AV + E MI   GI PD   +  ++N  CR G +  A ++++ ++++G       Y+ L+
Sbjct: 251 AVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALM 310

Query: 177 KGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
            G C  GK+ ++ Q  D + K GLK +   Y+ L+    +    DEAMKLL ++ A    
Sbjct: 311 NGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCR 370

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
            + ++YNV+L GL  EGR+E+A+++     ++G   +  SY I+L +LC  G  E+A   
Sbjct: 371 ADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKF 430

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           L+ M E  + P   T+N L+  L   G TE    VL    R G      S+  ++  +CK
Sbjct: 431 LSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICK 490

Query: 357 EGKVDLVVQCLDQMI 371
           E K+  V + LD ++
Sbjct: 491 ERKLVHVFELLDSLV 505



 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 175/399 (43%), Gaps = 41/399 (10%)

Query: 120 RVMEMI----VGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH-GFQTGTVTYNT 174
           +VMEM     V + + P     +  +N L   G +  + +L+   + + G Q  T  +N 
Sbjct: 142 KVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNI 201

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           LVK  C +G +N                    ++FL+    K  G+              
Sbjct: 202 LVKHHCKNGDIN--------------------FAFLVVEEMKRSGISY------------ 229

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWEEA 293
             PN ++Y+ L+  L    R+++A+ELF D+ +K G SP  V++N+++   C  G  E A
Sbjct: 230 --PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERA 287

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             +L  M +   +P+V  Y+ L+      G+ ++A +  DE+ ++G  +    Y  ++  
Sbjct: 288 KKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNC 347

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPM 412
            C+ G+ D  ++ L +M   R   +  TYN I   L  +G+ +EA  +    G++     
Sbjct: 348 FCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLN 407

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
               + +++ LC  G    A + L  M++ G  P   T++ LV  +C  G  +  + +  
Sbjct: 408 KGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLI 467

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
                  +P   ++ A++   CK ++     E+   +V+
Sbjct: 468 GFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 175/415 (42%), Gaps = 42/415 (10%)

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGK-------LNQS------------LQLLDRLTKKGLK 201
           ++ GF     TY+ L+  L  H K       L+Q             L L+   ++  L 
Sbjct: 81  QQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLH 140

Query: 202 PNVFTYSFLLEGAYKER----GVDEAMKLLDD-----------IIAR---GGEPNLVSYN 243
             V     L++   + +     +   + LL D           + A+   G +PN   +N
Sbjct: 141 DKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 200

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFS-PSVVSYNILLRSLCYEGRWEEANGLLAEM-D 301
           +L+   CK G    A  +  ++   G S P+ ++Y+ L+  L    R +EA  L  +M  
Sbjct: 201 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMIS 260

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           +E +SP  VT+N++I      G  E+A ++LD M ++G N    +Y+ ++   CK GK+ 
Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQ 320

Query: 362 LVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
              Q  D++       +   Y  +    C  G+  EA  +   +     C       NVI
Sbjct: 321 EAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEM-KASRCRADTLTYNVI 379

Query: 421 -SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
              L  +G +  A QML +    G   +  +Y  ++  +C  G L++A++   ++ E   
Sbjct: 380 LRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGI 439

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
            P    +N L++  C+   T++ + +    +  G +P   ++  +VE +  E +L
Sbjct: 440 WPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKL 494



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 145/354 (40%), Gaps = 44/354 (12%)

Query: 197 KKGLKPNVFTYSFLLEGAYKER---GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
           +KG   N  TYS LL+   + +    VD  +  +     R  E   ++   L+    +  
Sbjct: 82  QKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLN---LMRHFSRSD 138

Query: 254 RTEDAIELFRDLPAKG-FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVT 311
             +  +E+F  +       PS+ + +  L  L   G    +  LL        L P+   
Sbjct: 139 LHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCI 198

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNV-TATSYNPIIARLCKEGKVDLVVQCLDQM 370
           +NIL+     +G    AF V++EM RSG +   + +Y+ ++  L    +    V+  + M
Sbjct: 199 FNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDM 258

Query: 371 ICRR-YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           I +   SP+  T+N +                                  I+  CR G  
Sbjct: 259 ISKEGISPDPVTFNVM----------------------------------INGFCRAGEV 284

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A ++L  M K G  P+ Y YS+L+ G C+ G + EA + F  +++     D   Y  L
Sbjct: 285 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 344

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
           +  FC+   TD ++++   M    C  + +TY +++ GL+ E   + A  ++ +
Sbjct: 345 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQ 398



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 153/343 (44%), Gaps = 22/343 (6%)

Query: 239 LVSYNVLLTGLCKEGRTEDAIELF-RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
            +S+   ++ + +E   +  +++F +    KGF+ +  +Y++LL +L    ++   + +L
Sbjct: 53  FISHESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAIL 112

Query: 298 AEMDEEDLSPSVVTYNILITSLS---LHGRTEQAFEVLDEMTR--SGFNVTATSYNPIIA 352
            +M  E        +  L+   S   LH +  + F ++  + R     N  +T  N +I 
Sbjct: 113 HQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI- 171

Query: 353 RLCKEGKVDLVVQCLDQMICRR---YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
                G+V+L  + L  +  +      PN   +N  +   C+ G +  AF + + +    
Sbjct: 172 ---DSGEVNLSRKLL--LYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSG 226

Query: 409 -NCPMHDYCKNVISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLVRGMCREGMLDE 466
            + P       ++  L     +  A ++  +M +K G +PD  T++ ++ G CR G ++ 
Sbjct: 227 ISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVER 286

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           A +I   +++N   P++ NY+AL+ GFCK  +   + + F  +   G   + + YT L+ 
Sbjct: 287 AKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMN 346

Query: 527 GLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEFTA 569
                 E D A  L+ E+      SR   D L+    L+  ++
Sbjct: 347 CFCRNGETDEAMKLLGEMKA----SRCRADTLTYNVILRGLSS 385



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           + D      +L  L    ++ +A+++++     G+  +   Y  ++N LC  G +  A++
Sbjct: 370 RADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVK 429

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
            +  + E G      T+N LV  LC  G     +++L    + GL P   ++  ++E   
Sbjct: 430 FLSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESIC 489

Query: 216 KERGVDEAMKLLDDIIA 232
           KER +    +LLD +++
Sbjct: 490 KERKLVHVFELLDSLVS 506


>AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:13490251-13491458 FORWARD
           LENGTH=369
          Length = 369

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 1/319 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           + DA      M   G K DV   T L+  LCK+     A+ V++ +   GI P+   Y+ 
Sbjct: 29  IKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSS 88

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+  LC+ G +  A + + +++        +T++ L+      GKL++   +   + +  
Sbjct: 89  LITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMS 148

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           + PNVFTYS L+ G      VDEA+K+LD +I++G  PN+V+Y+ L  G  K  R +D I
Sbjct: 149 IDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGI 208

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           +L  D+P +G + + VS N L++     G+ + A G+   M    L P++ +YNI++  L
Sbjct: 209 KLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGL 268

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
             +G  E+A    + M ++  ++   +Y  +I  +CK   V        ++  +R  P+ 
Sbjct: 269 FANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDF 328

Query: 380 GTYN-AIAMLCEQGKVQEA 397
             Y   IA L   G   EA
Sbjct: 329 KAYTIMIAELNRAGMRTEA 347



 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 163/333 (48%), Gaps = 1/333 (0%)

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           K+ + G +   VT ++LV G C    +  ++ +  ++ K G+K +V   + L++   K R
Sbjct: 3   KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 62

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            V  A+++L  +  RG  PN+V+Y+ L+TGLCK GR  DA     ++ +K  +P+V++++
Sbjct: 63  LVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFS 122

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            L+ +    G+  + + +   M +  + P+V TY+ LI  L +H R ++A ++LD M   
Sbjct: 123 ALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISK 182

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G      +Y+ +     K  +VD  ++ LD M  R  + N  + N  I    + GK+  A
Sbjct: 183 GCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLA 242

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
             +F  + +    P       V++ L   G    A      M K     D  TY+ ++ G
Sbjct: 243 LGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHG 302

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
           MC+  M+ EA ++F  L+     PD   Y  +I
Sbjct: 303 MCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMI 335



 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 168/350 (48%), Gaps = 1/350 (0%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           GI PD    + LVN  C   +I  A+ +  ++E+ G +   V    L+  LC +  +  +
Sbjct: 8   GIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPA 67

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           L++L R+  +G+ PNV TYS L+ G  K   + +A + L ++ ++   PN+++++ L+  
Sbjct: 68  LEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDA 127

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
             K G+      +++ +      P+V +Y+ L+  LC   R +EA  +L  M  +  +P+
Sbjct: 128 YAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPN 187

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           VVTY+ L        R +   ++LD+M + G      S N +I    + GK+DL +    
Sbjct: 188 VVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFG 247

Query: 369 QMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            M      PN  +YN + A L   G+V++A   F+ +   +N         +I  +C+  
Sbjct: 248 YMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKAC 307

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
               A+ + Y++      PD   Y+ ++  + R GM  EA  + R  +++
Sbjct: 308 MVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADALNRFYQKH 357



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 164/336 (48%), Gaps = 1/336 (0%)

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
           ++ K G++P++ T S L+ G      + +A+ +   +   G + ++V   +L+  LCK  
Sbjct: 3   KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 62

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
               A+E+ + +  +G SP+VV+Y+ L+  LC  GR  +A   L EMD + ++P+V+T++
Sbjct: 63  LVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFS 122

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            LI + +  G+  +   V   M +   +    +Y+ +I  LC   +VD  ++ LD MI +
Sbjct: 123 ALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISK 182

Query: 374 RYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
             +PN  TY+ +A    +  +V +   +   +  +        C  +I    + G    A
Sbjct: 183 GCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLA 242

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
             +   MT  G  P+  +Y+ ++ G+   G +++AL  F  +++     DI  Y  +I G
Sbjct: 243 LGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHG 302

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            CK      + ++F ++  K   P+   YTI++  L
Sbjct: 303 MCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAEL 338



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 36/305 (11%)

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G EP++V+ + L+ G C     +DA+ +   +   G    VV   IL+ +LC       A
Sbjct: 8   GIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPA 67

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             +L  M +  +SP+VVTY+ LIT L   GR   A   L EM     N    +++ +I  
Sbjct: 68  LEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDA 127

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
             K GK+  V      MI     PN  TY++ I  LC   +V EA               
Sbjct: 128 YAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAI-------------- 173

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                                +ML  M   G TP+  TYS+L  G  +   +D+ +++  
Sbjct: 174 ---------------------KMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLD 212

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            + +     +  + N LI G+ +  + DL++ +F  M + G +PN  +Y I++ GL    
Sbjct: 213 DMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANG 272

Query: 533 ELDIA 537
           E++ A
Sbjct: 273 EVEKA 277



 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 117/225 (52%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D  +K  +L+      + M+     P+V   + L+Y LC  N+  +A++++++++  G  
Sbjct: 126 DAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCT 185

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y+ L N   +   +   ++L++ + + G    TV+ NTL+KG    GK++ +L +
Sbjct: 186 PNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGV 245

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +T  GL PN+ +Y+ +L G +    V++A+   + +     + ++++Y +++ G+CK
Sbjct: 246 FGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCK 305

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
               ++A +LF  L  K   P   +Y I++  L   G   EA+ L
Sbjct: 306 ACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 350



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 36/273 (13%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G  P +V+ + L+   C     ++A  +  +M++  +   VV   ILI +L  +     A
Sbjct: 8   GIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPA 67

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAM 387
            EVL  M   G +    +Y+ +I  LCK G++    + L +M  ++ +PN  T++A I  
Sbjct: 68  LEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDA 127

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
             ++GK+ +   +++                                M+ +M+     P+
Sbjct: 128 YAKRGKLSKVDSVYK--------------------------------MMIQMS---IDPN 152

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
            +TYSSL+ G+C    +DEA+++  ++      P++  Y+ L  GF K  R D  I++  
Sbjct: 153 VFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLD 212

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
            M  +G   N ++   L++G     ++D+A G+
Sbjct: 213 DMPQRGVAANTVSCNTLIKGYFQAGKIDLALGV 245



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 34/250 (13%)

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           + P +VT + L+    L    + A  V  +M + G          +I  LCK   V   +
Sbjct: 9   IEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPAL 68

Query: 365 QCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
           + L +M  R  SPN  TY+++                                  I+ LC
Sbjct: 69  EVLKRMKDRGISPNVVTYSSL----------------------------------ITGLC 94

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
           + G    A + L+EM      P+  T+S+L+    + G L +   +++++ +    P++ 
Sbjct: 95  KSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVF 154

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            Y++LI G C + R D +I++   M++KGC PN +TY+ L  G    + +D    L+ ++
Sbjct: 155 TYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDM 214

Query: 545 YMREVLSRST 554
             R V + + 
Sbjct: 215 PQRGVAANTV 224



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%)

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           + +M K G  PD  T SSLV G C    + +A+ +   +E+     D+     LI   CK
Sbjct: 1   MLKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK 60

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            +    ++E+ +RM ++G  PN +TY+ L+ GL     L  A   + E+  +++
Sbjct: 61  NRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKI 114


>AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 194/418 (46%), Gaps = 11/418 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L   LC+ G    A Q+ E ++  G          LV      GKL+ +  LL  L 
Sbjct: 106 YNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQ 163

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
              ++      + LL    K   V++AMKL D+ +      +  ++N+L+ GLC  G+ E
Sbjct: 164 SFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAE 223

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL-SPSVVTYNIL 315
            A+EL   +   G  P +V+YN L++  C      +A+ +  ++    + SP VVTY  +
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I+     G+  +A  +LD+M R G   T  ++N ++    K G++    +   +MI    
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
            P+  T+ + I   C  G+V + F +++ +  +   P       +I+ LC +     A +
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARE 403

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L ++      P  + Y+ ++ G C+ G ++EA  I   +E+    PD   +  LI+G C
Sbjct: 404 LLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHC 463

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
              R   ++ IF +MV  GC P++IT + L+  L       + AG+ KE Y    ++R
Sbjct: 464 MKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL-------LKAGMAKEAYHLNQIAR 514



 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 154/300 (51%), Gaps = 2/300 (0%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+  LC   KA KA+ ++ ++ G G  PD   Y  L+   C+   +  A ++ + V+   
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 165 F-QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                 VTY +++ G C  GK+ ++  LLD + + G+ P   T++ L++G  K   +  A
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTA 331

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
            ++   +I+ G  P++V++  L+ G C+ G+      L+ ++ A+G  P+  +Y+IL+ +
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           LC E R  +A  LL ++  +D+ P    YN +I      G+  +A  +++EM +      
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQ 402
             ++  +I   C +G++   V    +M+    SP++ T ++ ++ L + G  +EA+ + Q
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQ 511



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 137/273 (50%), Gaps = 1/273 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI-VGSGIIPDAACYTHLVNFLC 145
           L  M G G +PD+     L+   CKSN+  KA  + + +  GS   PD   YT +++  C
Sbjct: 229 LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYC 288

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
           + G +  A  L++ +   G     VT+N LV G    G++  + ++  ++   G  P+V 
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           T++ L++G  +   V +  +L +++ ARG  PN  +Y++L+  LC E R   A EL   L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
            +K   P    YN ++   C  G+  EAN ++ EM+++   P  +T+ ILI    + GR 
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
            +A  +  +M   G +    + + +++ L K G
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 40/383 (10%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
            LL  L K ++   A+++ +  +      D   +  L+  LC  G    A++L+  +   
Sbjct: 176 SLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGF 235

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKERGVDE 222
           G +   VTYNTL++G C   +LN++ ++   +    +  P+V TY+ ++ G  K   + E
Sbjct: 236 GCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMRE 295

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A  LLDD++  G  P  V++NVL+ G  K G    A E+   + + G  P VV++  L+ 
Sbjct: 296 ASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLID 355

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
             C  G+  +   L  EM+   + P+  TY+ILI +L    R  +A E+L ++       
Sbjct: 356 GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIP 415

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIF 401
               YNP+I   CK GKV+     +++M  ++  P++ T+  + +  C +G++ EA  IF
Sbjct: 416 QPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475

Query: 402 QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE 461
                                              ++M   G +PD  T SSL+  + + 
Sbjct: 476 -----------------------------------HKMVAIGCSPDKITVSSLLSCLLKA 500

Query: 462 GMLDEAL---EIFRILEENDYMP 481
           GM  EA    +I R  + N+ +P
Sbjct: 501 GMAKEAYHLNQIARKGQSNNVVP 523



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 164/383 (42%), Gaps = 35/383 (9%)

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN------LVS--------- 241
           K  ++ + +TY+ L     K    D A ++ + + + G  PN      LVS         
Sbjct: 96  KLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLH 155

Query: 242 ------------------YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
                              N LL  L K  R EDA++LF +           ++NIL+R 
Sbjct: 156 FATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRG 215

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL-DEMTRSGFNV 342
           LC  G+ E+A  LL  M      P +VTYN LI          +A E+  D  + S  + 
Sbjct: 216 LCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIF 401
              +Y  +I+  CK GK+      LD M+     P   T+N +     + G++  A  I 
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIR 335

Query: 402 QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE 461
             + +    P      ++I   CR G     F++  EM   G  P+++TYS L+  +C E
Sbjct: 336 GKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNE 395

Query: 462 GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
             L +A E+   L   D +P    YN +I GFCK  + + +  I + M  K C P++IT+
Sbjct: 396 NRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITF 455

Query: 522 TILVEGLAFENELDIAAGLMKEL 544
           TIL+ G   +  +  A  +  ++
Sbjct: 456 TILIIGHCMKGRMFEAVSIFHKM 478



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PDV   T ++   CK+ K R+A  +++ ++  GI P    +  LV+   + G +  A ++
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
             K+   G     VT+ +L+ G C  G+++Q  +L + +  +G+ PN FTYS L+     
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN 394

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           E  + +A +LL  + ++   P    YN ++ G CK G+  +A  +  ++  K   P  ++
Sbjct: 395 ENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKIT 454

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           + IL+   C +GR  EA  +  +M     SP  +T + L++ L   G  ++A+  L+++ 
Sbjct: 455 FTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIA 513

Query: 337 RSG 339
           R G
Sbjct: 514 RKG 516



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 110/218 (50%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  ++ +A   L+ M+  G  P       L+    K+ +   A  +   ++  G  PD  
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +T L++  CR G +    +L E++   G      TY+ L+  LC+  +L ++ +LL +L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             K + P  F Y+ +++G  K   V+EA  +++++  +  +P+ +++ +L+ G C +GR 
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            +A+ +F  + A G SP  ++ + LL  L   G  +EA
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  PDV   T L+   C+  +  +  R+ E +   G+ P+A  Y+ L+N LC    
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENR 397

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A +L+ ++           YN ++ G C  GK+N++  +++ + KK  KP+  T++ 
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G   +  + EA+ +   ++A G  P+ ++ + LL+ L K G  ++A  L   +  KG
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL-NQIARKG 516

Query: 270 FSPSVV 275
            S +VV
Sbjct: 517 QSNNVV 522



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +++  F   E M  +G  P+    + L+  LC  N+  KA  ++  +    IIP    Y 
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++  C+ G +  A  +VE++E+   +   +T+  L+ G C  G++ +++ +  ++   
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
           G  P+  T S LL    K     EA  L  + IAR G+ N V
Sbjct: 482 GCSPDKITVSSLLSCLLKAGMAKEAYHL--NQIARKGQSNNV 521



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 9/184 (4%)

Query: 381 TYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML--- 436
           TYN +   LC+ G    A  +F+ + +    P +     ++S    KG  + A  +L   
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
           +E+  C         +SL+  + +   +++A+++F          D   +N LI G C  
Sbjct: 165 FEVEGC-----CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGV 219

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVD 556
            + + ++E+   M   GC P+ +TY  L++G    NEL+ A+ + K++    V S   V 
Sbjct: 220 GKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVT 279

Query: 557 RLSM 560
             SM
Sbjct: 280 YTSM 283


>AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 194/418 (46%), Gaps = 11/418 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  L   LC+ G    A Q+ E ++  G          LV      GKL+ +  LL  L 
Sbjct: 106 YNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQ 163

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
              ++      + LL    K   V++AMKL D+ +      +  ++N+L+ GLC  G+ E
Sbjct: 164 SFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAE 223

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL-SPSVVTYNIL 315
            A+EL   +   G  P +V+YN L++  C      +A+ +  ++    + SP VVTY  +
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I+     G+  +A  +LD+M R G   T  ++N ++    K G++    +   +MI    
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
            P+  T+ + I   C  G+V + F +++ +  +   P       +I+ LC +     A +
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARE 403

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L ++      P  + Y+ ++ G C+ G ++EA  I   +E+    PD   +  LI+G C
Sbjct: 404 LLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHC 463

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
              R   ++ IF +MV  GC P++IT + L+  L       + AG+ KE Y    ++R
Sbjct: 464 MKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL-------LKAGMAKEAYHLNQIAR 514



 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 154/300 (51%), Gaps = 2/300 (0%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+  LC   KA KA+ ++ ++ G G  PD   Y  L+   C+   +  A ++ + V+   
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 165 F-QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                 VTY +++ G C  GK+ ++  LLD + + G+ P   T++ L++G  K   +  A
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTA 331

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
            ++   +I+ G  P++V++  L+ G C+ G+      L+ ++ A+G  P+  +Y+IL+ +
Sbjct: 332 EEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           LC E R  +A  LL ++  +D+ P    YN +I      G+  +A  +++EM +      
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQ 402
             ++  +I   C +G++   V    +M+    SP++ T ++ ++ L + G  +EA+ + Q
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQ 511



 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 137/273 (50%), Gaps = 1/273 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI-VGSGIIPDAACYTHLVNFLC 145
           L  M G G +PD+     L+   CKSN+  KA  + + +  GS   PD   YT +++  C
Sbjct: 229 LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYC 288

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
           + G +  A  L++ +   G     VT+N LV G    G++  + ++  ++   G  P+V 
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           T++ L++G  +   V +  +L +++ ARG  PN  +Y++L+  LC E R   A EL   L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
            +K   P    YN ++   C  G+  EAN ++ EM+++   P  +T+ ILI    + GR 
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG 358
            +A  +  +M   G +    + + +++ L K G
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 40/383 (10%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
            LL  L K ++   A+++ +  +      D   +  L+  LC  G    A++L+  +   
Sbjct: 176 SLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGF 235

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKERGVDE 222
           G +   VTYNTL++G C   +LN++ ++   +    +  P+V TY+ ++ G  K   + E
Sbjct: 236 GCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMRE 295

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A  LLDD++  G  P  V++NVL+ G  K G    A E+   + + G  P VV++  L+ 
Sbjct: 296 ASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLID 355

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
             C  G+  +   L  EM+   + P+  TY+ILI +L    R  +A E+L ++       
Sbjct: 356 GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIP 415

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIF 401
               YNP+I   CK GKV+     +++M  ++  P++ T+  + +  C +G++ EA  IF
Sbjct: 416 QPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475

Query: 402 QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE 461
                                              ++M   G +PD  T SSL+  + + 
Sbjct: 476 -----------------------------------HKMVAIGCSPDKITVSSLLSCLLKA 500

Query: 462 GMLDEAL---EIFRILEENDYMP 481
           GM  EA    +I R  + N+ +P
Sbjct: 501 GMAKEAYHLNQIARKGQSNNVVP 523



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 164/383 (42%), Gaps = 35/383 (9%)

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN------LVS--------- 241
           K  ++ + +TY+ L     K    D A ++ + + + G  PN      LVS         
Sbjct: 96  KLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLH 155

Query: 242 ------------------YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
                              N LL  L K  R EDA++LF +           ++NIL+R 
Sbjct: 156 FATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRG 215

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL-DEMTRSGFNV 342
           LC  G+ E+A  LL  M      P +VTYN LI          +A E+  D  + S  + 
Sbjct: 216 LCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIF 401
              +Y  +I+  CK GK+      LD M+     P   T+N +     + G++  A  I 
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIR 335

Query: 402 QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCRE 461
             + +    P      ++I   CR G     F++  EM   G  P+++TYS L+  +C E
Sbjct: 336 GKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNE 395

Query: 462 GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
             L +A E+   L   D +P    YN +I GFCK  + + +  I + M  K C P++IT+
Sbjct: 396 NRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITF 455

Query: 522 TILVEGLAFENELDIAAGLMKEL 544
           TIL+ G   +  +  A  +  ++
Sbjct: 456 TILIIGHCMKGRMFEAVSIFHKM 478



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PDV   T ++   CK+ K R+A  +++ ++  GI P    +  LV+   + G +  A ++
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
             K+   G     VT+ +L+ G C  G+++Q  +L + +  +G+ PN FTYS L+     
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN 394

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           E  + +A +LL  + ++   P    YN ++ G CK G+  +A  +  ++  K   P  ++
Sbjct: 395 ENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKIT 454

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           + IL+   C +GR  EA  +  +M     SP  +T + L++ L   G  ++A+  L+++ 
Sbjct: 455 FTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIA 513

Query: 337 RSG 339
           R G
Sbjct: 514 RKG 516



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 110/218 (50%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  ++ +A   L+ M+  G  P       L+    K+ +   A  +   ++  G  PD  
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            +T L++  CR G +    +L E++   G      TY+ L+  LC+  +L ++ +LL +L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
             K + P  F Y+ +++G  K   V+EA  +++++  +  +P+ +++ +L+ G C +GR 
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            +A+ +F  + A G SP  ++ + LL  L   G  +EA
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  PDV   T L+   C+  +  +  R+ E +   G+ P+A  Y+ L+N LC    
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENR 397

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A +L+ ++           YN ++ G C  GK+N++  +++ + KK  KP+  T++ 
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G   +  + EA+ +   ++A G  P+ ++ + LL+ L K G  ++A  L   +  KG
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL-NQIARKG 516

Query: 270 FSPSVV 275
            S +VV
Sbjct: 517 QSNNVV 522



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +++  F   E M  +G  P+    + L+  LC  N+  KA  ++  +    IIP    Y 
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++  C+ G +  A  +VE++E+   +   +T+  L+ G C  G++ +++ +  ++   
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
           G  P+  T S LL    K     EA  L  + IAR G+ N V
Sbjct: 482 GCSPDKITVSSLLSCLLKAGMAKEAYHL--NQIARKGQSNNV 521



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 9/184 (4%)

Query: 381 TYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML--- 436
           TYN +   LC+ G    A  +F+ + +    P +     ++S    KG  + A  +L   
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
           +E+  C         +SL+  + +   +++A+++F          D   +N LI G C  
Sbjct: 165 FEVEGC-----CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGV 219

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVD 556
            + + ++E+   M   GC P+ +TY  L++G    NEL+ A+ + K++    V S   V 
Sbjct: 220 GKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVT 279

Query: 557 RLSM 560
             SM
Sbjct: 280 YTSM 283


>AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:1390049-1393760 FORWARD LENGTH=952
          Length = 952

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/532 (23%), Positives = 232/532 (43%), Gaps = 65/532 (12%)

Query: 43  FSRVLASAQISISPKDSIFT--LPNWRVGKN-------DQKSKEVRLNDAFLHLEYMVGK 93
           F R+ A     I+P   I+T  +  + VG++        +K KE  +  + +    +VG 
Sbjct: 332 FERMRARG---ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGG 388

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
             K   A+A    +D        +A R+ + +       +A+ Y  ++   C+  N+  A
Sbjct: 389 FSKAGHAEAADYWFD--------EAKRIHKTL-------NASIYGKIIYAHCQTCNMERA 433

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             LV ++EE G       Y+T++ G        + L +  RL + G  P V TY  L+  
Sbjct: 434 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINL 493

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   + +A+++   +   G + NL +Y++++ G  K     +A  +F D+  +G  P 
Sbjct: 494 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD 553

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V+ YN ++ + C  G  + A   + EM +    P+  T+  +I   +  G   ++ EV D
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-------- 385
            M R G   T  ++N +I  L ++ +++  V+ LD+M     S NE TY  I        
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVG 673

Query: 386 -------------------------AML---CEQGKVQEAFFIFQSLGNKQNCPMHDYCK 417
                                    A+L   C+ G++Q A  + + + + +N P + +  
Sbjct: 674 DTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEM-SARNIPRNSFVY 732

Query: 418 NV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
           N+ I    R+G+ + A  ++ +M K G  PD +TY+S +    + G ++ A +    +E 
Sbjct: 733 NILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEA 792

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
               P+I  Y  LI G+ +    + ++  ++ M   G  P++  Y  L+  L
Sbjct: 793 LGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 188/430 (43%), Gaps = 1/430 (0%)

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
            +A    E +   GI P +  YT L++      ++  A+  V K++E G +   VTY+ +
Sbjct: 326 HRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVI 385

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
           V G    G    +    D   +     N   Y  ++    +   ++ A  L+ ++   G 
Sbjct: 386 VGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 445

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
           +  +  Y+ ++ G       +  + +F+ L   GF+P+VV+Y  L+      G+  +A  
Sbjct: 446 DAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALE 505

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
           +   M EE +  ++ TY+++I           AF V ++M + G       YN II+  C
Sbjct: 506 VSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFC 565

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHD 414
             G +D  +Q + +M   R+ P   T+  I     + G ++ +  +F  +      P   
Sbjct: 566 GMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVH 625

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
               +I+ L  K     A ++L EMT  G + + +TY+ +++G    G   +A E F  L
Sbjct: 626 TFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRL 685

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           +      DI  Y AL+   CK  R   ++ + + M  +    N   Y IL++G A   ++
Sbjct: 686 QNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDV 745

Query: 535 DIAAGLMKEL 544
             AA L++++
Sbjct: 746 WEAADLIQQM 755



 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 161/359 (44%), Gaps = 1/359 (0%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           +  +VK     G ++++ +  +R+  +G+ P    Y+ L+      R +DEA+  +  + 
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMK 371

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
             G E +LV+Y+V++ G  K G  E A   F +      + +   Y  ++ + C     E
Sbjct: 372 EEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 431

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  L+ EM+EE +   +  Y+ ++   ++    ++   V   +   GF  T  +Y  +I
Sbjct: 432 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLI 491

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNC 410
               K GK+   ++    M       N  TY+  I    +      AF +F+ +  +   
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 551

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           P      N+IS  C  GN   A Q + EM K    P + T+  ++ G  + G +  +LE+
Sbjct: 552 PDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEV 611

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           F ++     +P +  +N LI G  + ++ + ++EI   M   G   NE TYT +++G A
Sbjct: 612 FDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670



 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 118/271 (43%), Gaps = 9/271 (3%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P V     L+  L +  +  KAV +++ +  +G+  +   YT ++      G+ G A + 
Sbjct: 622 PTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEY 681

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
             +++  G      TY  L+K  C  G++  +L +   ++ + +  N F Y+ L++G  +
Sbjct: 682 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 741

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
              V EA  L+  +   G +P++ +Y   ++   K G    A +   ++ A G  P++ +
Sbjct: 742 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 801

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF------E 330
           Y  L++        E+A     EM    + P    Y+ L+TSL       +A+       
Sbjct: 802 YTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMT 861

Query: 331 VLDEMTRSGFNV---TATSYNPIIARLCKEG 358
           +  EM  +G  V   TA  ++  + ++   G
Sbjct: 862 ICKEMVEAGLIVDMGTAVHWSKCLCKIEASG 892


>AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10332375-10334558 REVERSE
           LENGTH=727
          Length = 727

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 8/318 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQ------KPDVAQATQLLYDLCKSNKARKAVRVM-EMIVGS 128
           K  R+++A    E M GK        K D      L+  LCK  + ++A  ++  M +  
Sbjct: 341 KSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEE 400

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
             +P+A  Y  L++  CR G +  A ++V +++E   +   VT NT+V G+C H  LN +
Sbjct: 401 RCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMA 460

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           +     + K+G+K NV TY  L+        V++AM   + ++  G  P+   Y  L++G
Sbjct: 461 VVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISG 520

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           LC+  R  DAI +   L   GFS  +++YN+L+   C +   E+   +L +M++E   P 
Sbjct: 521 LCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPD 580

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
            +TYN LI+    H   E    ++++M   G + T T+Y  +I   C  G++D  ++   
Sbjct: 581 SITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFK 640

Query: 369 QM-ICRRYSPNEGTYNAI 385
            M +  + +PN   YN +
Sbjct: 641 DMGLHSKVNPNTVIYNIL 658



 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 226/486 (46%), Gaps = 19/486 (3%)

Query: 80  LNDAFLHLEYMVGKGQ--KPDVAQATQLLYDLCKSN--KARKAVRVMEMIVGSGIIPDAA 135
           ++DAF  L+ M+ K     P+   A  +L+++ K       K + ++      G+ P++ 
Sbjct: 201 VDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSSHGVSPNSV 260

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
             T  ++ LC+      A  ++  + ++        +N L+  L  +  +++   L+ ++
Sbjct: 261 WLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVS-----YNVLLTGL 249
            +  ++P+V T   L+    K R VDEA+++ + +   R  + N++      +N L+ GL
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 250 CKEGRTEDAIELF-RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           CK GR ++A EL  R    +   P+ V+YN L+   C  G+ E A  +++ M E+++ P+
Sbjct: 381 CKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPN 440

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           VVT N ++  +  H     A     +M + G      +Y  +I   C    V+  +   +
Sbjct: 441 VVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYE 500

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLC 424
           +M+    SP+   Y A I+ LC+  +  +A  + + L   G   +   ++    +I + C
Sbjct: 501 KMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNM---LIGLFC 557

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
            K N    ++ML +M K G  PDS TY++L+    +    +    +   + E+   P + 
Sbjct: 558 DKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVT 617

Query: 485 NYNALILGFCKYQRTDLSIEIFQRM-VNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            Y A+I  +C     D ++++F+ M ++    PN + Y IL+   +       A  L +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677

Query: 544 LYMREV 549
           + M+ V
Sbjct: 678 MKMKMV 683



 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 187/419 (44%), Gaps = 45/419 (10%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG------IIP 132
           R+ND  L ++ +     +PDV     L+  LCKS +  +A+ V E + G        I  
Sbjct: 312 RMNDLVLKMDEV---KIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKA 368

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           D+  +  L++ LC+ G +  A +L+ +++ E       VTYN L+ G C  GKL  + ++
Sbjct: 369 DSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEV 428

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           + R+ +  +KPNV T + ++ G  +  G++ A+    D+   G + N+V+Y  L+   C 
Sbjct: 429 VSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCS 488

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               E A+  +  +   G SP    Y  L+  LC   R  +A  ++ ++ E   S  ++ 
Sbjct: 489 VSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLA 548

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN+LI         E+ +E+L +M + G    + +YN +I+   K    + V + ++QM 
Sbjct: 549 YNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMR 608

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
                P   TY A I   C  G++ EA  +F+ +G      +H                 
Sbjct: 609 EDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG------LH----------------- 645

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
                          P++  Y+ L+    + G   +AL +   ++     P+++ YNAL
Sbjct: 646 -----------SKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL 693



 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 185/421 (43%), Gaps = 14/421 (3%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           K +R+ E+     I         L+ +  R G +  ++ + E+++ +     +   N +V
Sbjct: 135 KLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSN--MKNSQVRNVVV 192

Query: 177 KGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFLLEGAYKERGVDEA--MKLLDDIIA 232
             L  +G ++ + ++LD + +K     PN  T   +L   +KER + E   + L+    +
Sbjct: 193 DVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKIIALISRFSS 252

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            G  PN V     ++ LCK  R   A ++  DL           +N LL  L        
Sbjct: 253 HGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISR 312

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM----TRSGFNVTATS-- 346
            N L+ +MDE  + P VVT  ILI +L    R ++A EV ++M    T  G  + A S  
Sbjct: 313 MNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIH 372

Query: 347 YNPIIARLCKEGKVDLVVQCLDQM-ICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           +N +I  LCK G++    + L +M +  R  PN  TYN  I   C  GK++ A  +   +
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRM 432

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
              +  P       ++  +CR      A     +M K G   +  TY +L+   C    +
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNV 492

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
           ++A+  +  + E    PD   Y ALI G C+ +R   +I + +++   G   + + Y +L
Sbjct: 493 EKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNML 552

Query: 525 V 525
           +
Sbjct: 553 I 553



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 134/269 (49%), Gaps = 1/269 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN A +    M  +G K +V     L++  C  +   KA+   E ++ +G  PDA  Y  
Sbjct: 457 LNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYA 516

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L++ LC+      A+++VEK++E GF    + YN L+   C      +  ++L  + K+G
Sbjct: 517 LISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEG 576

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            KP+  TY+ L+    K +  +   ++++ +   G +P + +Y  ++   C  G  ++A+
Sbjct: 577 KKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEAL 636

Query: 260 ELFRDLPAKG-FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +LF+D+      +P+ V YNIL+ +    G + +A  L  EM  + + P+V TYN L   
Sbjct: 637 KLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKC 696

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           L+   + E   +++DEM     N   + +
Sbjct: 697 LNEKTQGETLLKLMDEMVEHLVNQIRSQW 725



 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 130/277 (46%), Gaps = 1/277 (0%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KP+V     ++  +C+ +    AV     +   G+  +   Y  L++  C   N+  AM 
Sbjct: 438 KPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMY 497

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
             EK+ E G       Y  L+ GLC   + + +++++++L + G   ++  Y+ L+    
Sbjct: 498 WYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFC 557

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
            +   ++  ++L D+   G +P+ ++YN L++   K    E    +   +   G  P+V 
Sbjct: 558 DKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVT 617

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMD-EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           +Y  ++ + C  G  +EA  L  +M     ++P+ V YNILI + S  G   QA  + +E
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           M          +YN +   L ++ + + +++ +D+M+
Sbjct: 678 MKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMV 714


>AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16166444-16168276 FORWARD
           LENGTH=610
          Length = 610

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 11/372 (2%)

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG-VDE 222
           G    T T+N L    C+     +    L+++ ++G +P++ TY+ L+  +Y  RG + E
Sbjct: 231 GIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLV-SSYCRRGRLKE 289

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A  L   +  R   P+LV+Y  L+ GLCK+GR  +A + F  +  +G  P  +SYN L+ 
Sbjct: 290 AFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIY 349

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
           + C EG  +++  LL EM    + P   T  +++      GR   A   + E+ R   ++
Sbjct: 350 AYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDI 409

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRR-YSPNEGTY-NAIAMLCEQGKVQEAFFI 400
                + +I  LC+EGK       LD++I    +     TY N I  L     ++EA  +
Sbjct: 410 PFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVL 469

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
              L N+         + +I  LCR G    A  ++ EM      PDS+   +LV G C+
Sbjct: 470 KGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCK 529

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCK----YQRTDLSIEIFQRMVNKGCVP 516
           E   D+A  +  +      + D ++YN+L+   C+    Y++   ++E+ +RM   G VP
Sbjct: 530 ELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKK---ALELQERMQRLGFVP 586

Query: 517 NEITYTILVEGL 528
           N +T   L++ L
Sbjct: 587 NRLTCKYLIQVL 598


>AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 160/328 (48%), Gaps = 4/328 (1%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           D F+    M   G  P V      +  L    +   A+R    +    I P+      ++
Sbjct: 189 DTFMQ---MKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVM 245

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           +  CR G +   ++L++ +E  GF+   V+YNTL+ G C  G L+ +L+L + + K GL+
Sbjct: 246 SGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQ 305

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           PNV T++ L+ G  +   + EA K+  ++ A    PN V+YN L+ G  ++G  E A   
Sbjct: 306 PNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRF 365

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           + D+   G    +++YN L+  LC + +  +A   + E+D+E+L P+  T++ LI    +
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
               ++ FE+   M RSG +    ++N +++  C+    D   Q L +M+ R    +  T
Sbjct: 426 RKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRT 485

Query: 382 YNAIAM-LCEQGKVQEAFFIFQSLGNKQ 408
            + +   L  QGK Q    + Q +  K+
Sbjct: 486 VHQVCNGLKHQGKDQLVKKLLQEMEGKK 513



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 171/363 (47%), Gaps = 19/363 (5%)

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGG--------EPNLVSY----------NVLLT 247
           T++ +L    K R    A  +L D++  GG        +  L SY          + L  
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFK 176

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
                 +  +A + F  +   GF P+V S N  + SL  +GR + A     EM    +SP
Sbjct: 177 TFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISP 236

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           +  T N++++     G+ ++  E+L +M R GF  T  SYN +IA  C++G +   ++  
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
           + M      PN  T+N  I   C   K+QEA  +F  +      P       +I+   ++
Sbjct: 297 NMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
           G+   AF+   +M   G   D  TY++L+ G+C++    +A +  + L++ + +P+   +
Sbjct: 357 GDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTF 416

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           +ALI+G C  +  D   E+++ M+  GC PNE T+ +LV       + D A+ +++E+  
Sbjct: 417 SALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR 476

Query: 547 REV 549
           R +
Sbjct: 477 RSI 479



 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 1/305 (0%)

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           +++++GF     + N  +  L   G+++ +L+    + +  + PN +T + ++ G  +  
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSG 252

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            +D+ ++LL D+   G     VSYN L+ G C++G    A++L   +   G  P+VV++N
Sbjct: 253 KLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFN 312

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            L+   C   + +EA+ +  EM   +++P+ VTYN LI   S  G  E AF   ++M  +
Sbjct: 313 TLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCN 372

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEA 397
           G      +YN +I  LCK+ K     Q + ++      PN  T++A+ M  C +      
Sbjct: 373 GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRG 432

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
           F +++S+      P       ++S  CR  +   A Q+L EM +     DS T   +  G
Sbjct: 433 FELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNG 492

Query: 458 MCREG 462
           +  +G
Sbjct: 493 LKHQG 497



 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 163/382 (42%), Gaps = 34/382 (8%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           +++L K      K   +     ++   G  P V + +  +     +  VD A++   ++ 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR 230

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
                PN  + N++++G C+ G+ +  IEL +D+   GF  + VSYN L+   C +G   
Sbjct: 231 RCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLS 290

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  L   M +  L P+VVT+N LI       + ++A +V  EM          +YN +I
Sbjct: 291 SALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLI 350

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
               ++G  ++  +  + M+C     +  TYNA+                          
Sbjct: 351 NGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNAL-------------------------- 384

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
                   I  LC++  T  A Q + E+ K    P+S T+S+L+ G C     D   E++
Sbjct: 385 --------IFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELY 436

Query: 472 RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
           + +  +   P+   +N L+  FC+ +  D + ++ + MV +    +  T   +  GL  +
Sbjct: 437 KSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQ 496

Query: 532 NELDIAAGLMKELYMREVLSRS 553
            +  +   L++E+  ++ L  S
Sbjct: 497 GKDQLVKKLLQEMEGKKFLQES 518



 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 137/280 (48%), Gaps = 2/280 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P+      ++   C+S K  K + +++ +   G       Y  L+   C +G +  A++L
Sbjct: 236 PNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKL 295

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
              + + G Q   VT+NTL+ G C   KL ++ ++   +    + PN  TY+ L+ G Y 
Sbjct: 296 KNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLING-YS 354

Query: 217 ERGVDE-AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           ++G  E A +  +D++  G + ++++YN L+ GLCK+ +T  A +  ++L  +   P+  
Sbjct: 355 QQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSS 414

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +++ L+   C     +    L   M      P+  T+N+L+++   +   + A +VL EM
Sbjct: 415 TFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREM 474

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
            R    + + + + +   L  +GK  LV + L +M  +++
Sbjct: 475 VRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKF 514



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 52/339 (15%)

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRD--------LPAKGFSPSVVSY--------- 277
           G  +L ++ ++L  L K  + + A  + RD        LPAK F   + SY         
Sbjct: 111 GSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRV 170

Query: 278 -NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
            + L ++  +  ++  A     +M +    P+V + N  ++SL   GR + A     EM 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR 230

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
           R   +    + N +++  C+ GK+D  ++ L  M    +   + +YN +           
Sbjct: 231 RCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL----------- 279

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
                                  I+  C KG    A ++   M K G  P+  T+++L+ 
Sbjct: 280 -----------------------IAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIH 316

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G CR   L EA ++F  ++  +  P+   YN LI G+ +    +++   ++ MV  G   
Sbjct: 317 GFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQR 376

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
           + +TY  L+ GL  + +   AA  +KEL    ++  S+ 
Sbjct: 377 DILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSST 415


>AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 160/328 (48%), Gaps = 4/328 (1%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           D F+    M   G  P V      +  L    +   A+R    +    I P+      ++
Sbjct: 189 DTFMQ---MKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVM 245

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           +  CR G +   ++L++ +E  GF+   V+YNTL+ G C  G L+ +L+L + + K GL+
Sbjct: 246 SGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQ 305

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           PNV T++ L+ G  +   + EA K+  ++ A    PN V+YN L+ G  ++G  E A   
Sbjct: 306 PNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRF 365

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           + D+   G    +++YN L+  LC + +  +A   + E+D+E+L P+  T++ LI    +
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
               ++ FE+   M RSG +    ++N +++  C+    D   Q L +M+ R    +  T
Sbjct: 426 RKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRT 485

Query: 382 YNAIAM-LCEQGKVQEAFFIFQSLGNKQ 408
            + +   L  QGK Q    + Q +  K+
Sbjct: 486 VHQVCNGLKHQGKDQLVKKLLQEMEGKK 513



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 171/363 (47%), Gaps = 19/363 (5%)

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGG--------EPNLVSY----------NVLLT 247
           T++ +L    K R    A  +L D++  GG        +  L SY          + L  
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFK 176

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
                 +  +A + F  +   GF P+V S N  + SL  +GR + A     EM    +SP
Sbjct: 177 TFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISP 236

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           +  T N++++     G+ ++  E+L +M R GF  T  SYN +IA  C++G +   ++  
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
           + M      PN  T+N  I   C   K+QEA  +F  +      P       +I+   ++
Sbjct: 297 NMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
           G+   AF+   +M   G   D  TY++L+ G+C++    +A +  + L++ + +P+   +
Sbjct: 357 GDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTF 416

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           +ALI+G C  +  D   E+++ M+  GC PNE T+ +LV       + D A+ +++E+  
Sbjct: 417 SALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR 476

Query: 547 REV 549
           R +
Sbjct: 477 RSI 479



 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 1/305 (0%)

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           +++++GF     + N  +  L   G+++ +L+    + +  + PN +T + ++ G  +  
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSG 252

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            +D+ ++LL D+   G     VSYN L+ G C++G    A++L   +   G  P+VV++N
Sbjct: 253 KLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFN 312

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            L+   C   + +EA+ +  EM   +++P+ VTYN LI   S  G  E AF   ++M  +
Sbjct: 313 TLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCN 372

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEA 397
           G      +YN +I  LCK+ K     Q + ++      PN  T++A+ M  C +      
Sbjct: 373 GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRG 432

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
           F +++S+      P       ++S  CR  +   A Q+L EM +     DS T   +  G
Sbjct: 433 FELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNG 492

Query: 458 MCREG 462
           +  +G
Sbjct: 493 LKHQG 497



 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 163/382 (42%), Gaps = 34/382 (8%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           +++L K      K   +     ++   G  P V + +  +     +  VD A++   ++ 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR 230

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
                PN  + N++++G C+ G+ +  IEL +D+   GF  + VSYN L+   C +G   
Sbjct: 231 RCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLS 290

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  L   M +  L P+VVT+N LI       + ++A +V  EM          +YN +I
Sbjct: 291 SALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLI 350

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
               ++G  ++  +  + M+C     +  TYNA+                          
Sbjct: 351 NGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNAL-------------------------- 384

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
                   I  LC++  T  A Q + E+ K    P+S T+S+L+ G C     D   E++
Sbjct: 385 --------IFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELY 436

Query: 472 RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
           + +  +   P+   +N L+  FC+ +  D + ++ + MV +    +  T   +  GL  +
Sbjct: 437 KSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQ 496

Query: 532 NELDIAAGLMKELYMREVLSRS 553
            +  +   L++E+  ++ L  S
Sbjct: 497 GKDQLVKKLLQEMEGKKFLQES 518



 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 137/280 (48%), Gaps = 2/280 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P+      ++   C+S K  K + +++ +   G       Y  L+   C +G +  A++L
Sbjct: 236 PNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKL 295

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
              + + G Q   VT+NTL+ G C   KL ++ ++   +    + PN  TY+ L+ G Y 
Sbjct: 296 KNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLING-YS 354

Query: 217 ERGVDE-AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           ++G  E A +  +D++  G + ++++YN L+ GLCK+ +T  A +  ++L  +   P+  
Sbjct: 355 QQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSS 414

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +++ L+   C     +    L   M      P+  T+N+L+++   +   + A +VL EM
Sbjct: 415 TFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREM 474

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
            R    + + + + +   L  +GK  LV + L +M  +++
Sbjct: 475 VRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKF 514



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 52/339 (15%)

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRD--------LPAKGFSPSVVSY--------- 277
           G  +L ++ ++L  L K  + + A  + RD        LPAK F   + SY         
Sbjct: 111 GSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRV 170

Query: 278 -NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
            + L ++  +  ++  A     +M +    P+V + N  ++SL   GR + A     EM 
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR 230

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
           R   +    + N +++  C+ GK+D  ++ L  M    +   + +YN +           
Sbjct: 231 RCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL----------- 279

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
                                  I+  C KG    A ++   M K G  P+  T+++L+ 
Sbjct: 280 -----------------------IAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIH 316

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           G CR   L EA ++F  ++  +  P+   YN LI G+ +    +++   ++ MV  G   
Sbjct: 317 GFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQR 376

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
           + +TY  L+ GL  + +   AA  +KEL    ++  S+ 
Sbjct: 377 DILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSST 415


>AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6165449-6167515 FORWARD
           LENGTH=688
          Length = 688

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 222/503 (44%), Gaps = 47/503 (9%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA-AC--- 136
           ++A   L+ +  +G +PD    + +++ LC + +  +A R   + + SG IPD   C   
Sbjct: 72  DEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEAHRRFLLFLASGFIPDERTCNVI 131

Query: 137 ---------------------------------YTHLVNFLCRRGNIGYAMQLVEKVEEH 163
                                            Y  L+N LC    +  A +LV  +   
Sbjct: 132 IARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLMNQLCTIYRVIDAHKLVFDMRNR 191

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G     VT+ TL+ G C   +L  + ++ D +   G++PN  T S L+ G  K R V+  
Sbjct: 192 GHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLSVLIGGFLKMRDVETG 251

Query: 224 MKLLDDIIA-----RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
            KL+ ++               ++  L+  +C+EG   D  E+  ++          +Y 
Sbjct: 252 RKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFNDIFEIAENMSLCESVNVEFAYG 311

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            ++ SLC   R   A  ++  M  + L P   +YN +I  L   G   +A+++L+E +  
Sbjct: 312 HMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEF 371

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
            F  +  +Y  ++  LCKE         L+ M+ +  +     YN  +  LC      E 
Sbjct: 372 EFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNPTEI 431

Query: 398 FFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGF-TPDSYTYSSLV 455
             +  S+  + +C   +Y  N VI+ LC+ G    A ++L +M    F  PD+ T ++++
Sbjct: 432 LNVLVSM-LQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVM 490

Query: 456 RGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
            G+  +G  +EAL++  R++ EN   P +  YNA+I G  K  + D ++ +F ++     
Sbjct: 491 CGLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASV 550

Query: 515 VPNEITYTILVEGLAFENELDIA 537
             +  TY I+++GL   N++D+A
Sbjct: 551 TADSTTYAIIIDGLCVTNKVDMA 573



 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 137 YTHLVNFLCR-RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
           Y H+++ LCR R N G A ++V  ++  G +    +YN ++ GLC  G   ++ QLL+  
Sbjct: 310 YGHMIDSLCRYRRNHG-AARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEG 368

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG-------------------- 235
           ++    P+ +TY  L+E   KE    +A  +L+ ++ + G                    
Sbjct: 369 SEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNP 428

Query: 236 ---------------EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF-SPSVVSYNI 279
                           P+  + N ++ GLCK GR +DA+++  D+    F +P  V+ N 
Sbjct: 429 TEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNT 488

Query: 280 LLRSLCYEGRWEEANGLLAE-MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
           ++  L  +GR EEA  +L   M E  + P VV YN +I  L    + ++A  V  ++ ++
Sbjct: 489 VMCGLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKA 548

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
                +T+Y  II  LC   KVD+  +  D +I      +   Y A +  LC+ G + +A
Sbjct: 549 SVTADSTTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDA 608

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLC-RKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
                 L +    P +  C N +   C R G    A+Q+L EM K G  PD+ T+  L
Sbjct: 609 CHFLYDLADSGAIP-NVVCYNTVIAECSRSGLKREAYQILEEMRKNGQAPDAVTWRIL 665



 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 201/456 (44%), Gaps = 10/456 (2%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ DA   +  M  +G  PDV   T L+   C+  +   A +V + +   GI P++   +
Sbjct: 177 RVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLS 236

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEH-GFQTGT----VTYNTLVKGLCSHGKLNQSLQLLD 193
            L+    +  ++    +L++++ E+   +T T      +  LV  +C  G  N   ++ +
Sbjct: 237 VLIGGFLKMRDVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFNDIFEIAE 296

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            ++        F Y  +++   + R    A +++  + ++G +P   SYN ++ GLCK+G
Sbjct: 297 NMSLCESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDG 356

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
               A +L  +     F PS  +Y +L+ SLC E    +A  +L  M  ++ +     YN
Sbjct: 357 GCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRIYN 416

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           I +  L +     +   VL  M +        + N +I  LCK G+VD  ++ LD M+  
Sbjct: 417 IYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTG 476

Query: 374 RY-SPNEGTYNAIAM-LCEQGKVQEAFFIFQSL--GNKQNCPMHDYCKNVISMLCRKGNT 429
           ++ +P+  T N +   L  QG+ +EA  +   +   NK    +  Y   VI  L +    
Sbjct: 477 KFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMPENKIKPGVVAY-NAVIRGLFKLHKG 535

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A  +  ++ K   T DS TY+ ++ G+C    +D A + +  +       D   Y A 
Sbjct: 536 DEAMSVFGQLEKASVTADSTTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHDAFVYAAF 595

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           + G C+      +      + + G +PN + Y  ++
Sbjct: 596 LKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVI 631



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 183/423 (43%), Gaps = 9/423 (2%)

Query: 131 IPDAACYTHLVNFLCR-RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           + D A +   ++ +C  R N   A+++++ +   G++  ++  ++++  LC  G+ +++ 
Sbjct: 51  VTDRAYWRRRIHSICAVRRNPDEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEAH 110

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE--PNLVSYNVLLT 247
           +        G  P+  T + ++      R     + ++  +I    E  P+L +YN L+ 
Sbjct: 111 RRFLLFLASGFIPDERTCNVIIARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLMN 170

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
            LC   R  DA +L  D+  +G  P VV++  L+   C     E A+ +  EM    + P
Sbjct: 171 QLCTIYRVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRP 230

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS-----YNPIIARLCKEGKVDL 362
           + +T ++LI         E   +++ E+     N T TS     +  ++  +C+EG  + 
Sbjct: 231 NSLTLSVLIGGFLKMRDVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFND 290

Query: 363 VVQCLDQM-ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
           + +  + M +C   +      + I  LC   +   A  I   + +K   P       +I 
Sbjct: 291 IFEIAENMSLCESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIH 350

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            LC+ G    A+Q+L E ++  F P  YTY  L+  +C+E    +A  +  ++   +   
Sbjct: 351 GLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGAD 410

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
               YN  + G C        + +   M+   C P+E T   ++ GL     +D A  ++
Sbjct: 411 RTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVL 470

Query: 542 KEL 544
            ++
Sbjct: 471 DDM 473



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVME-MIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
           +PD      ++  LCK  +   A++V++ M+ G    PDA     ++  L  +G    A+
Sbjct: 444 RPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEAL 503

Query: 155 QLVEKV-EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++ +V  E+  + G V YN +++GL    K ++++ +  +L K  +  +  TY+ +++G
Sbjct: 504 DVLNRVMPENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASVTADSTTYAIIIDG 563

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
                 VD A K  DD+I   G  +   Y   L GLC+ G   DA     DL   G  P+
Sbjct: 564 LCVTNKVDMAKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPN 623

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           VV YN ++      G   EA  +L EM +   +P  VT+ IL
Sbjct: 624 VVCYNTVIAECSRSGLKREAYQILEEMRKNGQAPDAVTWRIL 665



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 145/336 (43%), Gaps = 37/336 (11%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG KP       +++ LCK     +A +++E        P    Y  L+  LC+  +
Sbjct: 333 MKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKELD 392

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
            G A  ++E +        T  YN  ++GLC      + L +L  + +   +P+ +T + 
Sbjct: 393 TGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNT 452

Query: 210 LLEGAYKERGVDEAMKLLDDII-ARGGEPNLVSYNVLLTGLCKEGRTEDAIELF-RDLPA 267
           ++ G  K   VD+AMK+LDD++  +   P+ V+ N ++ GL  +GR E+A+++  R +P 
Sbjct: 453 VINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMPE 512

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
               P VV+YN ++R L    + +EA  +  ++++  ++    TY I+I  L +  + + 
Sbjct: 513 NKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASVTADSTTYAIIIDGLCVTNKVDM 572

Query: 328 AFEVLDE-----------------------------------MTRSGFNVTATSYNPIIA 352
           A +  D+                                   +  SG       YN +IA
Sbjct: 573 AKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVIA 632

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
              + G      Q L++M     +P+  T+  +  L
Sbjct: 633 ECSRSGLKREAYQILEEMRKNGQAPDAVTWRILDKL 668



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 152/346 (43%), Gaps = 8/346 (2%)

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           R  DEA+++LD +  RG  P+ ++ + ++  LC  GR ++A   F    A GF P   + 
Sbjct: 69  RNPDEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEAHRRFLLFLASGFIPDERTC 128

Query: 278 NILLRSLCYEGRWEEANGLLAEMD--EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           N+++  L Y        G++  +   +++  PS+  YN L+  L    R   A +++ +M
Sbjct: 129 NVIIARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLMNQLCTIYRVIDAHKLVFDM 188

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKV 394
              G      ++  +I   C+  ++++  +  D+M      PN  T +  I    +   V
Sbjct: 189 RNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLSVLIGGFLKMRDV 248

Query: 395 QEAFFIFQSLG----NKQNCPMHDYC-KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           +    + + L     N+ +  M      N++  +CR+G     F++   M+ C      +
Sbjct: 249 ETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFNDIFEIAENMSLCESVNVEF 308

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
            Y  ++  +CR      A  I  I++     P   +YNA+I G CK      + ++ +  
Sbjct: 309 AYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEG 368

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
                 P+E TY +L+E L  E +   A  +++ +  +E   R+ +
Sbjct: 369 SEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRI 414


>AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2399117-2400496 REVERSE
           LENGTH=459
          Length = 459

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 2/322 (0%)

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           K+    KA+ V   I     +        L+N L   G +  A    +  ++   +  +V
Sbjct: 128 KAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSV 187

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           ++N L+KG         + ++ D + +  ++P+V TY+ L+    +   + +A  LL+D+
Sbjct: 188 SFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDM 247

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           I +   PN V++ +L+ GLC +G   +A +L  D+  +G  P +V+Y IL+  L   GR 
Sbjct: 248 IKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRI 307

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           +EA  LL EM +  + P VV YNIL+  L    R  +A+ VL EM   G    A +Y  +
Sbjct: 308 DEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMM 367

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQN 409
           I   C+    D  +  L+ M+  R+ P   T+   +A L + G +  A F+ + +G K  
Sbjct: 368 IDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNL 427

Query: 410 CPMHDYCKNVISMLCRK-GNTY 430
                  +N++S LC K G  Y
Sbjct: 428 SFGSGAWQNLLSDLCIKDGGVY 449



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 167/367 (45%), Gaps = 1/367 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G + D    + L+Y L KS       +++ ++    +    + +  L+    + G++  A
Sbjct: 76  GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKA 135

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + +  K+          + NTL+  L  +G+L ++    D      L+PN  +++ L++G
Sbjct: 136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              +   + A K+ D+++    +P++V+YN L+  LC+      A  L  D+  K   P+
Sbjct: 196 FLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPN 255

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V++ +L++ LC +G + EA  L+ +M+     P +V Y IL++ L   GR ++A  +L 
Sbjct: 256 AVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLG 315

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQG 392
           EM +         YN ++  LC E +V    + L +M  +   PN  TY   I   C   
Sbjct: 316 EMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIE 375

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
                  +  ++   ++CP       +++ L + GN   A  +L  M K   +  S  + 
Sbjct: 376 DFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQ 435

Query: 453 SLVRGMC 459
           +L+  +C
Sbjct: 436 NLLSDLC 442



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 7/355 (1%)

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
           ++L L  +  + G + +  +YS L+    K R  D   ++L  +  R        +  L+
Sbjct: 64  EALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLI 123

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
               K G  + AI++F  + +     ++ S N L+  L   G  E+A        +  L 
Sbjct: 124 QHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLR 183

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
           P+ V++NILI         E A +V DEM       +  +YN +I  LC+   +      
Sbjct: 184 PNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSL 243

Query: 367 LDQMICRRYSPNEGTYNAIAM-LCEQGKVQEA---FFIFQSLGNKQNCPMHDYCKNVISM 422
           L+ MI +R  PN  T+  +   LC +G+  EA    F  +  G K     +     ++S 
Sbjct: 244 LEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGI---LMSD 300

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           L ++G    A  +L EM K    PD   Y+ LV  +C E  + EA  +   ++     P+
Sbjct: 301 LGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPN 360

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
              Y  +I GFC+ +  D  + +   M+     P   T+  +V GL     LD A
Sbjct: 361 AATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHA 415



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 160/361 (44%), Gaps = 1/361 (0%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+ L  + +E GF+    +Y++L+  L      +   Q+L  +  + ++     +  L++
Sbjct: 65  ALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQ 124

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              K   VD+A+ +   I +      + S N L+  L   G  E A   F         P
Sbjct: 125 HYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRP 184

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           + VS+NIL++    +  WE A  +  EM E ++ PSVVTYN LI  L  +    +A  +L
Sbjct: 185 NSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLL 244

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQ 391
           ++M +      A ++  ++  LC +G+ +   + +  M  R   P    Y  + + L ++
Sbjct: 245 EDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKR 304

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G++ EA  +   +  ++  P       +++ LC +     A+++L EM   G  P++ TY
Sbjct: 305 GRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATY 364

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
             ++ G CR    D  L +   +  + + P    +  ++ G  K    D +  + + M  
Sbjct: 365 RMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGK 424

Query: 512 K 512
           K
Sbjct: 425 K 425



 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 160/375 (42%), Gaps = 1/375 (0%)

Query: 101 QATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV 160
           +    L DL +     +A+ +       G   D   Y+ L+  L +  N     Q++  V
Sbjct: 48  EEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLV 107

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
                +     +  L++     G +++++ +  ++T       + + + L+        +
Sbjct: 108 RYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGEL 167

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           ++A    D        PN VS+N+L+ G   +   E A ++F ++      PSVV+YN L
Sbjct: 168 EKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSL 227

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           +  LC      +A  LL +M ++ + P+ VT+ +L+  L   G   +A +++ +M   G 
Sbjct: 228 IGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGC 287

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFF 399
                +Y  +++ L K G++D     L +M  RR  P+   YN +   LC + +V EA+ 
Sbjct: 288 KPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYR 347

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +   +  K   P     + +I   CR  +      +L  M      P   T+  +V G+ 
Sbjct: 348 VLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLI 407

Query: 460 REGMLDEALEIFRIL 474
           + G LD A  +  ++
Sbjct: 408 KGGNLDHACFVLEVM 422



 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           LE M+ K  +P+      L+  LC   +  +A ++M  +   G  P    Y  L++ L +
Sbjct: 244 LEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGK 303

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
           RG I  A  L+ ++++   +   V YN LV  LC+  ++ ++ ++L  +  KG KPN  T
Sbjct: 304 RGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAAT 363

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y  +++G  +    D  + +L+ ++A    P   ++  ++ GL K G  + A  +   + 
Sbjct: 364 YRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMG 423

Query: 267 AKGFSPSVVSYNILLRSLC 285
            K  S    ++  LL  LC
Sbjct: 424 KKNLSFGSGAWQNLLSDLC 442



 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 128/304 (42%), Gaps = 1/304 (0%)

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
            LT L +    E+A+ LF      GF     SY+ L+  L     ++  + +L  +   +
Sbjct: 52  FLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRN 111

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           +      +  LI      G  ++A +V  ++T      T  S N +I  L   G+++   
Sbjct: 112 VRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAK 171

Query: 365 QCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML 423
              D     R  PN  ++N  I    ++   + A  +F  +   +  P      ++I  L
Sbjct: 172 SFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFL 231

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
           CR  +   A  +L +M K    P++ T+  L++G+C +G  +EA ++   +E     P +
Sbjct: 232 CRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGL 291

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            NY  L+    K  R D +  +   M  +   P+ + Y ILV  L  E  +  A  ++ E
Sbjct: 292 VNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTE 351

Query: 544 LYMR 547
           + M+
Sbjct: 352 MQMK 355


>AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16915860-16918238 FORWARD
           LENGTH=709
          Length = 709

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 192/457 (42%), Gaps = 38/457 (8%)

Query: 110 CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM--QLVEKVEEHGFQT 167
            ++N   KA+ ++  +   G   D   Y+ ++  L R   I   M  +L +++E    + 
Sbjct: 208 ARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLEL 267

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
                N ++ G    G  +++LQLL      GL     T   ++          EA  L 
Sbjct: 268 DVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALF 327

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           +++   G +P   +YN LL G  K G  +DA  +  ++  +G SP   +Y++L+ +    
Sbjct: 328 EELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNA 387

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           GRWE A  +L EM+  D+ P+   ++ L+      G  ++ F+VL EM   G       Y
Sbjct: 388 GRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFY 447

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK--VQEAFF----- 399
           N +I    K   +D  +   D+M+     P+  T+N  I   C+ G+  V E  F     
Sbjct: 448 NVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER 507

Query: 400 ------------IFQSLGNKQNC----------------PMHDYCKNVISMLCRKGNTYP 431
                       +  S G+++                  P       ++ +  + G    
Sbjct: 508 RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFND 567

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A + L EM   G  P S  Y++L+    + G+ ++A+  FR++  +   P +   N+LI 
Sbjct: 568 AIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLIN 627

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            F + +R   +  + Q M   G  P+ +TYT L++ L
Sbjct: 628 AFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKAL 664



 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 1/369 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E +   G KP       LL    K+   + A  ++  +   G+ PD   Y+ L++    
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G    A  +++++E    Q  +  ++ L+ G    G+  ++ Q+L  +   G+KP+   
Sbjct: 387 AGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   K   +D AM   D +++ G EP+ V++N L+   CK GR   A E+F  + 
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 506

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            +G  P   +YNI++ S   + RW++   LL +M  + + P+VVT+  L+      GR  
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-I 385
            A E L+EM   G   ++T YN +I    + G  +  V     M      P+    N+ I
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626

Query: 386 AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
               E  +  EAF + Q +      P       ++  L R         +  EM   G  
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686

Query: 446 PDSYTYSSL 454
           PD    S L
Sbjct: 687 PDRKARSML 695



 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 3/369 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G     A    ++  L  S +  +A  + E +  SGI P    Y  L+    + G +  A
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             +V ++E+ G      TY+ L+    + G+   +  +L  +    ++PN F +S LL G
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 214 AYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
            +++RG   +  ++L ++ + G +P+   YNV++    K    + A+  F  + ++G  P
Sbjct: 419 -FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
             V++N L+   C  GR   A  +   M+     P   TYNI+I S     R +    +L
Sbjct: 478 DRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 537

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
            +M   G      ++  ++    K G+ +  ++CL++M      P+   YNA I    ++
Sbjct: 538 GKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQR 597

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G  ++A   F+ + +    P      ++I+          AF +L  M + G  PD  TY
Sbjct: 598 GLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTY 657

Query: 452 SSLVRGMCR 460
           ++L++ + R
Sbjct: 658 TTLMKALIR 666



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 138/300 (46%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R   A + L+ M     +P+    ++LL       + +K  +V++ +   G+ PD   Y 
Sbjct: 389 RWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++   +   + +AM   +++   G +   VT+NTL+   C HG+   + ++ + + ++
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERR 508

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G  P   TY+ ++     +   D+  +LL  + ++G  PN+V++  L+    K GR  DA
Sbjct: 509 GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDA 568

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           IE   ++ + G  PS   YN L+ +    G  E+A      M  + L PS++  N LI +
Sbjct: 569 IECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 628

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                R  +AF VL  M  +G      +Y  ++  L +  K   V    ++MI     P+
Sbjct: 629 FGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPD 688



 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 177/404 (43%), Gaps = 9/404 (2%)

Query: 151 GYAMQLVEKVEEHGF-QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           G A  +V  +++H    +  + Y+ L+  L    KL ++  L     K+ L P   TY+ 
Sbjct: 148 GLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQ---KQTLTP--LTYNA 202

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA--IELFRDLPA 267
           L+    +   +++A+ L+  +   G + + V+Y++++  L +  + +    + L++++  
Sbjct: 203 LIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIER 262

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
                 V   N ++      G   +A  LL       LS    T   +I++L+  GRT +
Sbjct: 263 DKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLE 322

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IA 386
           A  + +E+ +SG      +YN ++    K G +      + +M  R  SP+E TY+  I 
Sbjct: 323 AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLID 382

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
                G+ + A  + + +      P       +++    +G     FQ+L EM   G  P
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D   Y+ ++    +   LD A+  F  +      PD   +N LI   CK+ R  ++ E+F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
           + M  +GC+P   TY I++     +   D    L+ ++  + +L
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGIL 546



 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+ A    + M+ +G +PD      L+   CK  +   A  + E +   G +P A  Y  
Sbjct: 460 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 519

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++N    +       +L+ K++  G     VT+ TLV      G+ N +++ L+ +   G
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579

Query: 200 LKPNVFTYSFLLEGAYKERGVDE-AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           LKP+   Y+ L+  AY +RG+ E A+     + + G +P+L++ N L+    ++ R  +A
Sbjct: 580 LKPSSTMYNALI-NAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEA 638

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             + + +   G  P VV+Y  L+++L    ++++   +  EM      P     ++L ++
Sbjct: 639 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698

Query: 319 LSLHGRTEQA 328
           L    +T +A
Sbjct: 699 LRYMKQTLRA 708



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 117/279 (41%), Gaps = 37/279 (13%)

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y+IL+ +L   GR E+         ++ L+P  +TYN LI + + +   E+A  ++ +M 
Sbjct: 170 YSILIHAL---GRSEKLYEAFLLSQKQTLTP--LTYNALIGACARNNDIEKALNLIAKMR 224

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
           + G+     +Y+ +I  L +  K+D V      M+ R Y              E+ K++ 
Sbjct: 225 QDGYQSDFVNYSLVIQSLTRSNKIDSV------MLLRLYKE-----------IERDKLEL 267

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
              +                 ++I    + G+   A Q+L      G +  + T  S++ 
Sbjct: 268 DVQL---------------VNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIIS 312

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
            +   G   EA  +F  L ++   P    YNAL+ G+ K      +  +   M  +G  P
Sbjct: 313 ALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSP 372

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
           +E TY++L++        + A  ++KE+   +V   S V
Sbjct: 373 DEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFV 411



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +D    L  M  +G  P+V   T L+    KS +   A+  +E +   G+ P +  Y 
Sbjct: 529 RWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYN 588

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+N   +RG    A+     +   G +   +  N+L+       +  ++  +L  + + 
Sbjct: 589 ALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN 648

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           G+KP+V TY+ L++   +     +   + +++I  G +P+  + ++L + L
Sbjct: 649 GVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSAL 699


>AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18445730-18447646 REVERSE
           LENGTH=638
          Length = 638

 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 203/415 (48%), Gaps = 11/415 (2%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+     +N  +KAV V++ +   G+ PD   +  L++ LC+ G++  A ++ E + E  
Sbjct: 173 LMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK- 231

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
           F      + +L+ G C  GKL ++ ++L ++ + GL+P++  ++ LL G      + +A 
Sbjct: 232 FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAY 291

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCK-EGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
            L++D+  RG EPN+  Y VL+  LC+ E R ++A+ +F ++   G    +V+Y  L+  
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
            C  G  ++   +L +M ++ + PS VTY  ++ +     + E+  E++++M R G +  
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQ 402
              YN +I   CK G+V   V+  ++M     SP   T+   I     QG + EA   F+
Sbjct: 412 LLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFK 471

Query: 403 SLGNKQ--NCPMHDYCKNVISMLCRKGNTYPAFQMLY----EMTKCGFTPDSYTYSSLVR 456
            + ++   + P +   K++++ L R      A  +      + + C     ++T    + 
Sbjct: 472 EMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTI--WIH 529

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
            +  +G + EA      + E D MP  + Y  L+ G  K     ++ EI +++V 
Sbjct: 530 ALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVK 584



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 167/363 (46%), Gaps = 7/363 (1%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           +  L++   S   + +++++LD + K GL+P+ + +  LL+   K   V EA K+ +D+ 
Sbjct: 170 FVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR 229

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
            +   PNL  +  LL G C+EG+  +A E+   +   G  P +V +  LL    + G+  
Sbjct: 230 EK-FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMA 288

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSL-SLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           +A  L+ +M +    P+V  Y +LI +L     R ++A  V  EM R G      +Y  +
Sbjct: 289 DAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTAL 348

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQN 409
           I+  CK G +D     LD M  +   P++ TY  I +  E+  + +E   + + +  +  
Sbjct: 349 ISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGC 408

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P       VI + C+ G    A ++  EM   G +P   T+  ++ G   +G L EA  
Sbjct: 409 HPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACN 468

Query: 470 IFRILEENDYM--PDIDNYNALILGFCKYQRTDLSIEIFQRMVNK--GCVPNEITYTILV 525
            F+ +        P      +L+    +  + +++ +++  + NK   C  N   +TI +
Sbjct: 469 HFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWI 528

Query: 526 EGL 528
             L
Sbjct: 529 HAL 531



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 183/378 (48%), Gaps = 7/378 (1%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ M   G +PD      LL  LCK+   ++A +V E +      P+   +T L+   CR
Sbjct: 190 LDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCR 248

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  A +++ +++E G +   V +  L+ G    GK+  +  L++ + K+G +PNV  
Sbjct: 249 EGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNC 308

Query: 207 YSFLLEGAYK-ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           Y+ L++   + E+ +DEAM++  ++   G E ++V+Y  L++G CK G  +    +  D+
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             KG  PS V+Y  ++ +   + ++EE   L+ +M      P ++ YN++I      G  
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEV 428

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY--SPNEGTYN 383
           ++A  + +EM  +G +    ++  +I     +G +        +M+ R    +P  GT  
Sbjct: 429 KEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLK 488

Query: 384 AIA-MLCEQGKVQEAFFIFQSLGNK-QNCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMT 440
           ++   L    K++ A  ++  + NK  +C ++     + I  L  KG+   A     +M 
Sbjct: 489 SLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMM 548

Query: 441 KCGFTPDSYTYSSLVRGM 458
           +    P   TY+ L++G+
Sbjct: 549 EMDLMPQPNTYAKLMKGL 566



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           +E +L +A   L  M   G +PD+   T LL     + K   A  +M  +   G  P+  
Sbjct: 248 REGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVN 307

Query: 136 CYTHLVNFLCR-RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
           CYT L+  LCR    +  AM++  ++E +G +   VTY  L+ G C  G +++   +LD 
Sbjct: 308 CYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDD 367

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           + KKG+ P+  TY  ++    K+   +E ++L++ +  RG  P+L+ YNV++   CK G 
Sbjct: 368 MRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGE 427

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL--SPSVVTY 312
            ++A+ L+ ++ A G SP V ++ I++     +G   EA     EM    +  +P   T 
Sbjct: 428 VKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTL 487

Query: 313 NILITSLSLHGRTEQAFEVLDEMTR--SGFNVTATSYNPIIARLCKEGKV-DLVVQCLDQ 369
             L+ +L    + E A +V   ++   S   +  +++   I  L  +G V +    CLD 
Sbjct: 488 KSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDM 547

Query: 370 M 370
           M
Sbjct: 548 M 548



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 176/408 (43%), Gaps = 42/408 (10%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG---LKPNV 204
           GN+GY   L    +   F +  V   ++V  L    +      L++ + K     ++P +
Sbjct: 111 GNLGYRFFLWATKQPGYFHSYEVC-KSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPEL 169

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
           F    L+        V +A+++LD++   G EP+   +  LL  LCK G  ++A ++F D
Sbjct: 170 FV--VLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFED 227

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +  K F P++  +  LL   C EG+  EA  +L +M E  L P +V +  L++  +  G+
Sbjct: 228 MREK-FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCK-EGKVDLVVQCLDQMICRRYSPNEGTYN 383
              A++++++M + GF      Y  +I  LC+ E ++D  ++   +M   RY        
Sbjct: 287 MADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEM--ERYG------- 337

Query: 384 AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
                CE   V      + +L               IS  C+ G     + +L +M K G
Sbjct: 338 -----CEADIV-----TYTAL---------------ISGFCKWGMIDKGYSVLDDMRKKG 372

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
             P   TY  ++    ++   +E LE+   ++     PD+  YN +I   CK      ++
Sbjct: 373 VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAV 432

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLS 551
            ++  M   G  P   T+ I++ G   +  L  A    KE+  R + S
Sbjct: 433 RLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFS 480


>AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:679487-681904 FORWARD
           LENGTH=805
          Length = 805

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 210/466 (45%), Gaps = 34/466 (7%)

Query: 92  GKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIG 151
           G    PD+     L++ LC   KA+ A+ V + +  SG  PD + Y  L+   C+   + 
Sbjct: 282 GSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMD 341

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
            AM++  +++ +GF   T+ YN L+ G     K+ ++ QL +++ ++G++ + +TY+ L+
Sbjct: 342 DAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILI 401

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           +G ++    +    L  D+  +G   + ++++++   LC+EG+ E A++L  ++  +GFS
Sbjct: 402 DGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFS 461

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI-TSLSLHGRTEQAF- 329
             +V+ + LL     +GRW+    L+  + E +L P+V+ +N  +  SL      ++ + 
Sbjct: 462 VDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYT 521

Query: 330 -------EVLDEMTRSGF---NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
                    LD M+  G      +A   +P+      E         +DQ+  +R  P  
Sbjct: 522 PMFPSKGSFLDIMSMVGSEDDGASAEEVSPM------EDDPWSSSPYMDQLAHQRNQPKP 575

Query: 380 GTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
                      +G+  EA         K +    D     +S+   KG+   A ++    
Sbjct: 576 ------LFGLARGQRVEA---------KPDSFDVDMMNTFLSIYLSKGDLSLACKLFEIF 620

Query: 440 TKCGFTP-DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
              G T   SYTY+S++    ++G    A  +   + EN    DI  YN +I G  K  R
Sbjct: 621 NGMGVTDLTSYTYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGR 680

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            DL+  +  R+  +G   + + Y  L+  L     LD A  L   +
Sbjct: 681 ADLASAVLDRLTKQGGYLDIVMYNTLINALGKATRLDEATQLFDHM 726



 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 179/420 (42%), Gaps = 29/420 (6%)

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
           A  Y+ +   +CR G +G    L+  ++E G          L+  L   GK   +L +LD
Sbjct: 92  ATAYSQIFRTVCRTGLLGEVPDLLGSMKEDGVNLDQTMAKILLDSLIRSGKFESALGVLD 151

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL------------DD---IIARGGEPN 238
            + + G   N   Y  +L    K+  +  A+ +L            DD   +I     P 
Sbjct: 152 YMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEASDNHSDDDTGRVIIVSYLPG 211

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPA-KGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
            V+ N LL GL +     +   +F  L   K F     SYNI +      G  + A  L 
Sbjct: 212 TVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALSLF 271

Query: 298 AEMDEED------LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            EM E          P + TYN LI  L L G+ + A  V DE+  SG     ++Y  +I
Sbjct: 272 KEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILI 331

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSL---GNK 407
              CK  ++D  ++   +M    + P+   YN +     +  KV EA  +F+ +   G +
Sbjct: 332 QGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVR 391

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
            +C  ++    +I  L R G     F +  ++ K G   D+ T+S +   +CREG L+ A
Sbjct: 392 ASCWTYNI---LIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGA 448

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           +++   +E   +  D+   ++L++GF K  R D   ++ + +     VPN + +   VE 
Sbjct: 449 VKLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNLVPNVLRWNAGVEA 508



 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 218/512 (42%), Gaps = 41/512 (8%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP-DAACYTHLVNFLCRRGNIGYAMQ 155
           P      +LL  L +++   +  RV E + G      D   Y   ++     G++  A+ 
Sbjct: 210 PGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALS 269

Query: 156 LVEKVEEHG------FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           L ++++E        F     TYN+L+  LC  GK   +L + D L   G +P+  TY  
Sbjct: 270 LFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRI 329

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++G  K   +D+AM++  ++   G  P+ + YN LL G  K  +  +A +LF  +  +G
Sbjct: 330 LIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEG 389

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
              S  +YNIL+  L   GR E    L  ++ ++      +T++I+   L   G+ E A 
Sbjct: 390 VRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGAV 449

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA---IA 386
           ++++EM   GF+V   + + ++    K+G+ D   + +  +      PN   +NA    +
Sbjct: 450 KLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNLVPNVLRWNAGVEAS 509

Query: 387 MLCEQGKVQEAFFIFQSLGN-----------------KQNCPMHD---YCKNVISMLCRK 426
           +   Q K ++   +F S G+                 ++  PM D        +  L  +
Sbjct: 510 LKRPQSKDKDYTPMFPSKGSFLDIMSMVGSEDDGASAEEVSPMEDDPWSSSPYMDQLAHQ 569

Query: 427 GNTYPAFQMLYEMTKCGFTPDSY---TYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
            N       L    +    PDS+     ++ +     +G L  A ++F I      + D+
Sbjct: 570 RNQPKPLFGLARGQRVEAKPDSFDVDMMNTFLSIYLSKGDLSLACKLFEIFNGMG-VTDL 628

Query: 484 DN--YNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
            +  YN+++  F K      +  +  +M    C  +  TY ++++GL      D+A+ ++
Sbjct: 629 TSYTYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVL 688

Query: 542 KEL-----YMREVLSRSTVDRLSMQYDLKEFT 568
             L     Y+  V+  + ++ L     L E T
Sbjct: 689 DRLTKQGGYLDIVMYNTLINALGKATRLDEAT 720



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/512 (22%), Positives = 203/512 (39%), Gaps = 105/512 (20%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +  DA +  + +   G +PD +    L+   CKS +   A+R+   +  +G +PD   Y 
Sbjct: 304 KAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYN 363

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGL------------------- 179
            L++   +   +  A QL EK+ + G +    TYN L+ GL                   
Sbjct: 364 CLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKK 423

Query: 180 ----------------CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                           C  GKL  +++L++ +  +G   ++ T S LL G +K+   D  
Sbjct: 424 GQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWK 483

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCK--EGRTEDAIELFRDLPAKG------------ 269
            KL+  I      PN++ +N  +    K  + + +D   +F   P+KG            
Sbjct: 484 EKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYTPMF---PSKGSFLDIMSMVGSE 540

Query: 270 --------FSP---SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
                    SP      S +  +  L ++    +    LA     +  P     +++ T 
Sbjct: 541 DDGASAEEVSPMEDDPWSSSPYMDQLAHQRNQPKPLFGLARGQRVEAKPDSFDVDMMNTF 600

Query: 319 LSLH---GRTEQA---FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
           LS++   G    A   FE+ + M  +  ++T+ +YN +++   K+G        LDQM  
Sbjct: 601 LSIYLSKGDLSLACKLFEIFNGMGVT--DLTSYTYNSMMSSFVKKGYFQTARGVLDQMFE 658

Query: 373 RRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
              + +  TYN                I Q LG                   + G    A
Sbjct: 659 NFCAADIATYNV---------------IIQGLG-------------------KMGRADLA 684

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
             +L  +TK G   D   Y++L+  + +   LDEA ++F  ++ N   PD+ +YN +I  
Sbjct: 685 SAVLDRLTKQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEV 744

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
             K  +   + +  + M++ GC+PN +T TIL
Sbjct: 745 NSKAGKLKEAYKYLKAMLDAGCLPNHVTDTIL 776



 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 23/282 (8%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G+  S  +Y+ + R++C  G   E   LL  M E+ ++       IL+ SL   G+ E A
Sbjct: 87  GYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKEDGVNLDQTMAKILLDSLIRSGKFESA 146

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL---------------DQMICR 373
             VLD M   G  +  + Y+ ++  L K+ ++ L +  L                ++I  
Sbjct: 147 LGVLDYMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEASDNHSDDDTGRVIIV 206

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAF-FIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYP 431
            Y P     N + +   +  ++  F  +F+ L   +      +  N+ I      G+   
Sbjct: 207 SYLPGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDA 266

Query: 432 AFQMLYEMTK------CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
           A  +  EM +        F PD  TY+SL+  +C  G   +AL ++  L+ + + PD   
Sbjct: 267 ALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNST 326

Query: 486 YNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           Y  LI G CK  R D ++ I+  M   G VP+ I Y  L++G
Sbjct: 327 YRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDG 368



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 160/395 (40%), Gaps = 34/395 (8%)

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G++     Y+ + + +C  G L +   LL  + + G+  +      LL+   +    + A
Sbjct: 87  GYKHSATAYSQIFRTVCRTGLLGEVPDLLGSMKEDGVNLDQTMAKILLDSLIRSGKFESA 146

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE-LFRDLPAKGFSPSVVSYNILLR 282
           + +LD +   G   N   Y+ +L  L K+     A+  LF+ L A        +  +++ 
Sbjct: 147 LGVLDYMEELGDCLNPSVYDSVLIALVKKHELRLALSILFKLLEASDNHSDDDTGRVIIV 206

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL---SLHGRTEQAFEVLDEMTRSG 339
           S                       P  V  N L+  L    +    ++ FE L  M R  
Sbjct: 207 SYL---------------------PGTVAVNELLVGLRRADMRSEFKRVFEKLKGMKR-- 243

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR------YSPNEGTYNA-IAMLCEQG 392
           F     SYN  I      G +D  +    +M  R       + P+  TYN+ I +LC  G
Sbjct: 244 FKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFG 303

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           K ++A  ++  L    + P +   + +I   C+      A ++  EM   GF PD+  Y+
Sbjct: 304 KAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYN 363

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            L+ G  +   + EA ++F  + +         YN LI G  +  R +    +F  +  K
Sbjct: 364 CLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKK 423

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           G   + IT++I+   L  E +L+ A  L++E+  R
Sbjct: 424 GQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETR 458



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           +YN +++   K+G  + A  +   +     +  + +YN++++ L   GR + A+ +L  +
Sbjct: 632 TYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRL 691

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
            ++     +V YN LI +L    R ++A ++ D M  +G N    SYN +I    K GK+
Sbjct: 692 TKQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKL 751

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAML---CEQGKVQEAFFI 400
               + L  M+     PN  T   +  L    E+ + ++A F+
Sbjct: 752 KEAYKYLKAMLDAGCLPNHVTDTILDYLGKEMEKARFKKASFV 794


>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28133933-28135381 FORWARD
           LENGTH=453
          Length = 453

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 35/338 (10%)

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
           L+ R+    + P+  T++ + E        D+A+KL  ++   G   +L S+N +L  LC
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLC 172

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K  R E A ELFR L  + FS   V+YN++L   C   R  +A  +L EM E  ++P++ 
Sbjct: 173 KSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLT 231

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TYN ++      G+   A+E   EM +    +   +Y  ++      G++       D+M
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           I     P+  TYNA+                                  I +LC+K N  
Sbjct: 292 IREGVLPSVATYNAM----------------------------------IQVLCKKDNVE 317

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            A  M  EM + G+ P+  TY+ L+RG+   G      E+ + +E     P+   YN +I
Sbjct: 318 NAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMI 377

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
             + +    + ++ +F++M +  C+PN  TY IL+ G+
Sbjct: 378 RYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGM 415



 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 52  ISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCK 111
           + I P    F +   R     +  K V+L   FL+   M   G   D+A    +L  LCK
Sbjct: 120 LRIGPSPKTFAIVAERYASAGKPDKAVKL---FLN---MHEHGCFQDLASFNTILDVLCK 173

Query: 112 SNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT 171
           S +  KA  +   + G   + D   Y  ++N  C       A+++++++ E G      T
Sbjct: 174 SKRVEKAYELFRALRGRFSV-DTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTT 232

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YNT++KG    G++  + +    + K+  + +V TY+ ++ G      +  A  + D++I
Sbjct: 233 YNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI 292

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
             G  P++ +YN ++  LCK+   E+A+ +F ++  +G+ P+V +YN+L+R L + G + 
Sbjct: 293 REGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFS 352

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
               L+  M+ E   P+  TYN++I   S     E+A  + ++M          +YN +I
Sbjct: 353 RGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412

Query: 352 ARL-CKEGKVDLVV 364
           + +  ++   D+VV
Sbjct: 413 SGMFVRKRSEDMVV 426



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 133/251 (52%), Gaps = 9/251 (3%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D      +L   C   +  KA+ V++ +V  GI P+   Y  ++    R G I +A +  
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFF 253

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++++   +   VTY T+V G    G++ ++  + D + ++G+ P+V TY+ +++   K+
Sbjct: 254 LEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKK 313

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             V+ A+ + ++++ RG EPN+ +YNVL+ GL   G      EL + +  +G  P+  +Y
Sbjct: 314 DNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTY 373

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE-------QAF- 329
           N+++R        E+A GL  +M   D  P++ TYNILI+ + +  R+E       QAF 
Sbjct: 374 NMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGNQAFA 433

Query: 330 -EVLDEMTRSG 339
            E+L   ++SG
Sbjct: 434 KEILRLQSKSG 444



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 134/274 (48%), Gaps = 1/274 (0%)

Query: 112 SNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT 171
           + K  KAV++   +   G   D A +  +++ LC+   +  A +L   +    F   TVT
Sbjct: 139 AGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVT 197

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YN ++ G C   +  ++L++L  + ++G+ PN+ TY+ +L+G ++   +  A +   ++ 
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK 257

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
            R  E ++V+Y  ++ G    G  + A  +F ++  +G  PSV +YN +++ LC +   E
Sbjct: 258 KRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVE 317

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  +  EM      P+V TYN+LI  L   G   +  E++  M   G      +YN +I
Sbjct: 318 NAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMI 377

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
               +  +V+  +   ++M      PN  TYN +
Sbjct: 378 RYYSECSEVEKALGLFEKMGSGDCLPNLDTYNIL 411


>AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:11126151-11128334 FORWARD
           LENGTH=727
          Length = 727

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/503 (21%), Positives = 215/503 (42%), Gaps = 38/503 (7%)

Query: 88  EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRR 147
           E M  +G+ P   Q   L+     + +  +   V E +   G  P    Y  +++ L + 
Sbjct: 182 ELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKN 241

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G    A+ + E  +E G    + T+  LVKGLC  G++ + L++L R+ +   KP+VF Y
Sbjct: 242 GYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAY 301

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           + +++    E  +D ++++ D++     +P++++Y  L+ GLCK+GR E   ELF ++  
Sbjct: 302 TAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKG 361

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           K        Y +L+     +G+   A  L  ++ +      +  YN +I  L    + ++
Sbjct: 362 KQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDK 421

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
           A+++              + +PI+       ++      L+++    Y  ++       +
Sbjct: 422 AYKLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKL 481

Query: 388 LC-EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
           LC ++ K   A  +F  L  K +  +  Y   ++  L + G+   +  + YEM K GF P
Sbjct: 482 LCADEEKNAMALDVFYILKTKGHGSVSVY-NILMEALYKMGDIQKSLSLFYEMRKLGFEP 540

Query: 447 DSYTYS-----------------------------------SLVRGMCREGMLDEALEIF 471
           DS +YS                                   SL +G+C+ G +D  + + 
Sbjct: 541 DSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLV 600

Query: 472 R-ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
           R  L   +  P    Y   +   CK    +  +++   M  +G   NE+ Y  ++ G++ 
Sbjct: 601 RECLGNVESGPMEFKYALTVCHVCKGSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSK 660

Query: 531 ENELDIAAGLMKELYMREVLSRS 553
              + +A  +  EL  R+V++ +
Sbjct: 661 HGTIKVAREVFTELKKRKVMTEA 683



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 200/454 (44%), Gaps = 44/454 (9%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+  LCK+ +  + + +++ +  +   PD   YT ++  L   GN+  ++++ +++    
Sbjct: 269 LVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDE 328

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
            +   + Y TLV GLC  G++ +  +L   +  K +  +   Y  L+EG   +  V  A 
Sbjct: 329 IKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSAC 388

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR-------DLPAKGFSPSVVSY 277
            L +D++  G   ++  YN ++ GLC   + + A +LF+       +   +  SP +V+Y
Sbjct: 389 NLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETLSPIMVAY 448

Query: 278 NILLRSLCYEGRWEEANGL-------------LAEMDEEDLS--------------PSVV 310
            ++ R   +    E    L             L   DEE  +               SV 
Sbjct: 449 VVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILKTKGHGSVS 508

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
            YNIL+ +L   G  +++  +  EM + GF   ++SY+  I    ++G V       +++
Sbjct: 509 VYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKI 568

Query: 371 ICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQS-LGNKQNCPMHDYCKNVISMLCRKGN 428
           I     P+   Y ++   LC+ G++     + +  LGN ++ PM       +  +C+  N
Sbjct: 569 IEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYALTVCHVCKGSN 628

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN--Y 486
                +++ EM + G   +   Y +++ GM + G +  A E+F  L++   M + D   Y
Sbjct: 629 AEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIKVAREVFTELKKRKVMTEADMVVY 688

Query: 487 NALILGFCKYQRTDL---SIEIF---QRMVNKGC 514
             +++   K +  DL    I+ F    ++  KGC
Sbjct: 689 EEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGC 722



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 132/303 (43%), Gaps = 1/303 (0%)

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
           +G + +  +YN     L + G    A +L   + ++G  PS   + IL+R      R   
Sbjct: 152 KGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGLR 211

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
              +  +M +    P V  YN ++ +L  +G  + A  V ++    G    +T++  ++ 
Sbjct: 212 VYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVK 271

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCP 411
            LCK G+++ +++ L +M      P+   Y A I  L  +G +  +  ++  +   +  P
Sbjct: 272 GLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKP 331

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
                  ++  LC+ G     +++  EM       D   Y  L+ G   +G +  A  ++
Sbjct: 332 DVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLW 391

Query: 472 RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
             L ++ Y+ DI  YNA+I G C   + D + ++FQ  + +   P+  T + ++      
Sbjct: 392 EDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETLSPIMVAYVVM 451

Query: 532 NEL 534
           N L
Sbjct: 452 NRL 454


>AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:11425270-11427669 REVERSE
           LENGTH=799
          Length = 799

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 190/417 (45%), Gaps = 11/417 (2%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT---VTYNTLVKGLCSHGKLNQSLQLLD 193
           Y   +N LC  G    A+ L+ ++ +  +  G         +V+G C+  K+  +  ++ 
Sbjct: 248 YKTFINGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMKAAESVII 307

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            + + G   +V+    +++   K   + EA+  LD ++ +G + N V  +++L   CK  
Sbjct: 308 EMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMD 367

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
              +A+E F++          V YN+   +L   GR EEA  LL EM +  + P V+ Y 
Sbjct: 368 MCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYT 427

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            LI    L G+   A +++DEM  +G +    +YN +++ L + G  + V++  ++M   
Sbjct: 428 TLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAE 487

Query: 374 RYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
              PN  T + I   LC   KV+EA   F SL  +Q CP +    + +   C  G +  A
Sbjct: 488 GPKPNAVTNSVIIEGLCFARKVKEAEDFFSSL--EQKCPENK--ASFVKGYCEAGLSKKA 543

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
           ++    +    +      Y  L   +C EG L++A ++ + +      P       +I  
Sbjct: 544 YKAFVRLE---YPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGA 600

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           FCK      +  +F  MV +G +P+  TYTI++      NEL  A  L +++  R +
Sbjct: 601 FCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGI 657



 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 207/464 (44%), Gaps = 27/464 (5%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           DV     ++   CK+    +A+  ++ ++G G+  +    + ++   C+      A++  
Sbjct: 317 DVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKF 376

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           ++  +       V YN     L   G++ ++ +LL  +  +G+ P+V  Y+ L++G   +
Sbjct: 377 KEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQ 436

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             V +A+ L+D++I  G  P+L++YNVL++GL + G  E+ +E++  + A+G  P+ V+ 
Sbjct: 437 GKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTN 496

Query: 278 NILLRSLCYEGRWEEANGLLAEMDE---EDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           ++++  LC+  + +EA    + +++   E+ +  V  Y        L  +  +AF     
Sbjct: 497 SVIIEGLCFARKVKEAEDFFSSLEQKCPENKASFVKGY----CEAGLSKKAYKAF----- 547

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
             R  + +  + Y  +   LC EG ++     L +M   R  P        I   C+   
Sbjct: 548 -VRLEYPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNN 606

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           V+EA  +F ++  +   P       +I   CR      A  +  +M + G  PD  TY+ 
Sbjct: 607 VREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTV 666

Query: 454 LVRGMCR-------------EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           L+    +             E    +A E+ R         D+  Y  LI   CK    +
Sbjct: 667 LLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLE 726

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            + E+F RM++ G  P+ + YT L+     +  +D+A  L+ EL
Sbjct: 727 QAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTEL 770



 Score =  132 bits (333), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 207/466 (44%), Gaps = 31/466 (6%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D+  K + L +A   L+ M+GKG K +    + +L   CK +   +A+   +      I 
Sbjct: 326 DRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIF 385

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            D  CY    + L + G +  A +L++++++ G     + Y TL+ G C  GK+  +L L
Sbjct: 386 LDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDL 445

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           +D +   G+ P++ TY+ L+ G  +    +E +++ + + A G +PN V+ +V++ GLC 
Sbjct: 446 IDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCF 505

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
             + ++A + F  L  K   P   +    ++  C  G  ++A      + E  L  SV  
Sbjct: 506 ARKVKEAEDFFSSLEQK--CPE--NKASFVKGYCEAGLSKKAYKAFVRL-EYPLRKSV-- 558

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           Y  L  SL + G  E+A +VL +M+        +    +I   CK   V       D M+
Sbjct: 559 YIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMV 618

Query: 372 CRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCP------------------M 412
            R   P+  TY   I   C   ++Q+A  +F+ +  +   P                   
Sbjct: 619 ERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEH 678

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
           H+ C     +  RK     A ++L E +  G   D   Y+ L+   C+   L++A E+F 
Sbjct: 679 HETCSVQGEVGKRK-----ASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFD 733

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
            + ++   PD+  Y  LI  + +    D+++ +   +  K  +P+E
Sbjct: 734 RMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSE 779



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 190/460 (41%), Gaps = 69/460 (15%)

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHG---KLNQSLQLLDRLTKKGL--- 200
           R +   A+  + +++EHG       Y TLV+ L + G   KL+  L  L +  ++G    
Sbjct: 67  RDDPNLALSFLRQLKEHGVSPNVNAYATLVRILTTWGLDIKLDSVLVELIKNEERGFTVM 126

Query: 201 ------------KPNVFT---YSFLLEGAYKERGV-DEAMKLLDDIIARGGEPNLVSYNV 244
                       K   F     S  L  AY   G+ DEA  +L          ++ + N 
Sbjct: 127 DLIEVIGEQAEEKKRSFVLIRVSGALVKAYVSLGMFDEATDVLFQSKRLDCVVDIKACNF 186

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           L+  + + G+    + LF+ L   G   +  +Y I++++LC +G  EEA  LL E     
Sbjct: 187 LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIE----- 241

Query: 305 LSPSVVTYNILITSLSLHGRTEQA----FEVLD--------------------------- 333
            + SV  Y   I  L + G TE+A     E++D                           
Sbjct: 242 -NESVFGYKTFINGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMK 300

Query: 334 -------EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
                  EM   GF +   +   +I R CK   +   +  LD+M+ +    N    + I 
Sbjct: 301 AAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLIL 360

Query: 387 M-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGF 444
              C+     EA   F+   +  N  +   C NV    L + G    AF++L EM   G 
Sbjct: 361 QCYCKMDMCLEALEKFKEFRD-MNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGI 419

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
            PD   Y++L+ G C +G + +AL++   +  N   PD+  YN L+ G  +    +  +E
Sbjct: 420 VPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLE 479

Query: 505 IFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           I++RM  +G  PN +T ++++EGL F  ++  A      L
Sbjct: 480 IYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSL 519



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 41/348 (11%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++ DA   ++ M+G G  PD+     L+  L ++    + + + E +   G  P+A   +
Sbjct: 438 KVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNS 497

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEH------GFQTG----------------------TV 170
            ++  LC    +  A      +E+        F  G                        
Sbjct: 498 VIIEGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKS 557

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            Y  L   LC  G L ++  +L +++   ++P       ++    K   V EA  L D +
Sbjct: 558 VYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTM 617

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL-RSLCYEGR 289
           + RG  P+L +Y +++   C+    + A  LF D+  +G  P VV+Y +LL R L  +  
Sbjct: 618 VERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPE 677

Query: 290 WEE------------ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             E            A+ +L E     +   VV Y +LI         EQA E+ D M  
Sbjct: 678 HHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMID 737

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           SG      +Y  +I+   ++G +D+ V  + ++  +   P+E    A+
Sbjct: 738 SGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSESFEAAV 785


>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6204940-6209691 REVERSE
           LENGTH=1440
          Length = 1440

 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 220/477 (46%), Gaps = 24/477 (5%)

Query: 26  FLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKND-QKSKEVRLNDAF 84
           FL  ++L+L++   N+  + +L +  + ++P D  F + +  VG+   Q++ EV     +
Sbjct: 129 FLTDKILSLKS---NQFVADILDARLVQMTPTDYCFVVKS--VGQESWQRALEVF---EW 180

Query: 85  LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM---EMIVGSGIIPDAACYTHLV 141
           L+L +       P+      +L  L + N+   AV +    E  VG  +      Y  ++
Sbjct: 181 LNLRHW----HSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRV----QVYNAMM 232

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKL--NQSLQLLDRLTKKG 199
               R G    A +LV+ + + G     +++NTL+      G L  N +++LLD +   G
Sbjct: 233 GVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSG 292

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L+P+  TY+ LL    ++  +D A+K+ +D+ A   +P+L +YN +++   + G   +A 
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE 352

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
            LF +L  KGF P  V+YN LL +   E   E+   +  +M +       +TYN +I   
Sbjct: 353 RLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMY 412

Query: 320 SLHGRTEQAFEVLDEMTR-SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
              G+ + A ++  +M   SG N  A +Y  +I  L K  +       + +M+     P 
Sbjct: 413 GKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPT 472

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
             TY+A I    + GK +EA   F  +      P +     ++ +L R   T  A+ +  
Sbjct: 473 LQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYR 532

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +M   G TP    Y  ++ G+ +E   D+  +  R +EE   M  ++  + L+ G C
Sbjct: 533 DMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGEC 589



 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 156/372 (41%), Gaps = 51/372 (13%)

Query: 189 LQLLDRLTKKGLKPNVFT------------YSFLLEGAYKERG-VDEAMKLLDDIIARGG 235
           L +L R  ++ L   +FT            Y+ ++ G Y   G   +A +L+D +  RG 
Sbjct: 198 LGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMM-GVYSRSGKFSKAQELVDAMRQRGC 256

Query: 236 EPNLVSYNVLLTGLCKEGRTED--AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            P+L+S+N L+    K G      A+EL   +   G  P  ++YN LL +   +   + A
Sbjct: 257 VPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGA 316

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             +  +M+     P + TYN +I+     G   +A  +  E+   GF   A +YN ++  
Sbjct: 317 VKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYA 376

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
             +E   + V +   QM    +  +E TYN I                            
Sbjct: 377 FARERNTEKVKEVYQQMQKMGFGKDEMTYNTI---------------------------- 408

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTK-CGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                 I M  ++G    A Q+  +M    G  PD+ TY+ L+  + +     EA  +  
Sbjct: 409 ------IHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            + +    P +  Y+ALI G+ K  + + + + F  M+  G  P+ + Y+++++ L   N
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGN 522

Query: 533 ELDIAAGLMKEL 544
           E   A GL +++
Sbjct: 523 ETRKAWGLYRDM 534



 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/495 (20%), Positives = 197/495 (39%), Gaps = 45/495 (9%)

Query: 90   MVGKGQKPDVAQATQLLYDLCKSNKA---RKAVRVMEMIVG------SGIIPDAACYT-- 138
            M+  G  P       ++  L K N++   +K +R ME + G      S ++    C+   
Sbjct: 534  MISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLA 593

Query: 139  --------------------HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKG 178
                                 ++      G    A +L+E ++EH   +  +    L+  
Sbjct: 594  ARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVL 653

Query: 179  LCSHGKLNQSLQ--LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
             C    L+ +L     D         +   Y  LL          EA ++  D+   G E
Sbjct: 654  HCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCE 713

Query: 237  PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF----SPSVVSYNILLRSLCYEGRWEE 292
             +      ++   CK G  E A ++      KGF    SP    Y  ++ +   +  W++
Sbjct: 714  ASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MYTDIIEAYGKQKLWQK 770

Query: 293  ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
            A  ++  + +   +P + T+N L+++ +  G  E+A  + + M R G + T  S N ++ 
Sbjct: 771  AESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLH 830

Query: 353  RLCKEGKVD---LVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQN 409
             LC +G+++   +VV+ L  M  +           +      G + E   I+ S+     
Sbjct: 831  ALCVDGRLEELYVVVEELQDMGFK--ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGY 888

Query: 410  CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
             P     + +I +LC+      A  M+ EM +  F  +   ++S+++         + ++
Sbjct: 889  LPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQ 948

Query: 470  IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
            +++ ++E    PD   YN LI+ +C+ +R +    + Q+M N G  P   TY  L+    
Sbjct: 949  VYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFG 1008

Query: 530  FENELDIAAGLMKEL 544
             +  L+ A  L +EL
Sbjct: 1009 KQKCLEQAEQLFEEL 1023



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/442 (20%), Positives = 188/442 (42%), Gaps = 46/442 (10%)

Query: 133  DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG-TVTYNTLVKGLCSHGKLNQSLQL 191
            ++ C + +V + C+ G    A Q+V + E  GF    +  Y  +++         ++  +
Sbjct: 716  ESVCKSMVVVY-CKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESV 774

Query: 192  LDRLTKKGLKPNVFTYSFLLEGAYKERGVDE-AMKLLDDIIARGGEPNLVSYNVLLTGLC 250
            +  L + G  P++ T++ L+  AY + G  E A  + + ++  G  P + S N+LL  LC
Sbjct: 775  VGNLRQSGRTPDLKTWNSLM-SAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALC 833

Query: 251  KEGRTE-------------------------DAI----------ELFRDLPAKGFSPSVV 275
             +GR E                         DA           +++  + A G+ P++ 
Sbjct: 834  VDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIR 893

Query: 276  SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI---TSLSLHGRTEQAFEVL 332
             Y +++  LC   R  +A  +++EM+E +    +  +N ++   T++  + +T Q ++ +
Sbjct: 894  LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRI 953

Query: 333  DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
             E   +G     T+YN +I   C++ + +     + QM      P   TY + I+   +Q
Sbjct: 954  KE---TGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQ 1010

Query: 392  GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
              +++A  +F+ L +K       +   ++ +    G+   A ++L  M   G  P   T 
Sbjct: 1011 KCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATM 1070

Query: 452  SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
              L+      G   EA ++   L++ +       Y+++I  + + +  +  IE    M  
Sbjct: 1071 HLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKK 1130

Query: 512  KGCVPNEITYTILVEGLAFENE 533
            +G  P+   +T  V   +F  E
Sbjct: 1131 EGLEPDHRIWTCFVRAASFSKE 1152



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 130/273 (47%)

Query: 79   RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
            RL + ++ +E +   G K   +    +L    ++    +  ++   +  +G +P    Y 
Sbjct: 837  RLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYR 896

Query: 139  HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
             ++  LC+   +  A  +V ++EE  F+     +N+++K   +     +++Q+  R+ + 
Sbjct: 897  MMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKET 956

Query: 199  GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            GL+P+  TY+ L+    ++R  +E   L+  +   G +P L +Y  L++   K+   E A
Sbjct: 957  GLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQA 1016

Query: 259  IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             +LF +L +KG       Y+ +++     G   +A  LL  M    + P++ T ++L+ S
Sbjct: 1017 EQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVS 1076

Query: 319  LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
             S  G  ++A +VL  +  +   +T   Y+ +I
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVI 1109



 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/390 (19%), Positives = 158/390 (40%), Gaps = 13/390 (3%)

Query: 94   GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
            G+ PD+     L+    +     +A  +   ++  G  P       L++ LC  G +   
Sbjct: 782  GRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEEL 841

Query: 154  MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
              +VE++++ GF+    +   ++      G + +  ++   +   G  P +  Y  ++E 
Sbjct: 842  YVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIEL 901

Query: 214  AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              K + V +A  ++ ++     +  L  +N +L         +  +++++ +   G  P 
Sbjct: 902  LCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPD 961

Query: 274  VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
              +YN L+   C + R EE   L+ +M    L P + TY  LI++       EQA ++ +
Sbjct: 962  ETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFE 1021

Query: 334  EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML----- 388
            E+   G  +  + Y+ ++ ++ ++   D   + L QM+      N G    +A +     
Sbjct: 1022 ELLSKGLKLDRSFYHTMM-KISRDSGSDSKAEKLLQMM-----KNAGIEPTLATMHLLMV 1075

Query: 389  --CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
                 G  QEA  +  +L + +         +VI    R  +     + L EM K G  P
Sbjct: 1076 SYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEP 1135

Query: 447  DSYTYSSLVRGMCREGMLDEALEIFRILEE 476
            D   ++  VR         E + + + LE+
Sbjct: 1136 DHRIWTCFVRAASFSKEKIEVMLLLKALED 1165



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 4/269 (1%)

Query: 76   KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
            K  R+ DA + +  M     K ++A    +L         +K V+V + I  +G+ PD  
Sbjct: 904  KGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDET 963

Query: 136  CYTHLVNFLCR--RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
             Y  L+   CR  R   GY   L++++   G      TY +L+        L Q+ QL +
Sbjct: 964  TYNTLIIMYCRDRRPEEGYL--LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFE 1021

Query: 194  RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
             L  KGLK +   Y  +++ +       +A KLL  +   G EP L + ++L+      G
Sbjct: 1022 ELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSG 1081

Query: 254  RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
              ++A ++  +L       + + Y+ ++ +      +      L EM +E L P    + 
Sbjct: 1082 NPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWT 1141

Query: 314  ILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
              + + S      +   +L  +   GF++
Sbjct: 1142 CFVRAASFSKEKIEVMLLLKALEDIGFDL 1170


>AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:25041901-25044849 REVERSE
           LENGTH=982
          Length = 982

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 207/479 (43%), Gaps = 32/479 (6%)

Query: 79  RLNDAFLHLEYMVGKGQKP-DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
            LN+A   L+ + G  + P  V     L Y  CK   A +A  + + +   G   D   Y
Sbjct: 216 HLNEAIGMLDTLCGMTRMPLPVNLYKSLFYCFCKRGCAAEAEALFDHMEVDGYYVDKVMY 275

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T L+   C+  N+  AM+L  ++ E  F+     +NTL+ G    G L++   +  ++ K
Sbjct: 276 TCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDKGRVMFSQMIK 335

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKL-LDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           KG++ NVFTY  ++    KE  VD A++L +++  +     N+  Y  L+ G  K+G  +
Sbjct: 336 KGVQSNVFTYHIMIGSYCKEGNVDYALRLFVNNTGSEDISRNVHCYTNLIFGFYKKGGMD 395

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSL--CYEGRWE----------------------- 291
            A++L   +   G  P  ++Y +LL+ L  C+E ++                        
Sbjct: 396 KAVDLLMRMLDNGIVPDHITYFVLLKMLPKCHELKYAMVILQSILDNGCGINPPVIDDLG 455

Query: 292 ----EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
               +   LL E+  +D + + V   ++ T+L        A   +++M   G      SY
Sbjct: 456 NIEVKVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSY 515

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGN 406
           N +I  L +E  ++ +   ++ +    + P+  TY  +   LC++     AF I  ++  
Sbjct: 516 NSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAMEE 575

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
               P      ++I  L ++G    A +   +M + G  PD   Y  ++    R G +DE
Sbjct: 576 LGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDE 635

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           A E+   + ++   P    Y  LI GF K    +   +   +M+  G  PN + YT L+
Sbjct: 636 ANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALI 694



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/525 (23%), Positives = 219/525 (41%), Gaps = 73/525 (13%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           ++G G  PD +    +++ L K  +  +A   ++ I+ SG  P     + +V+ LC +  
Sbjct: 122 VIGNGIVPDSSVLDSMVFCLVKLRRFDEARAHLDRIIASGYAPSRNSSSLVVDELCNQDR 181

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL---TKKGLKPNVFT 206
              A    E+V+E G          L KGLC HG LN+++ +LD L   T+  L  N++ 
Sbjct: 182 FLEAFHCFEQVKERGSGLWLWCCKRLFKGLCGHGHLNEAIGMLDTLCGMTRMPLPVNLYK 241

Query: 207 YSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
             F     + +RG   EA  L D +   G   + V Y  L+   CK+     A+ L+  +
Sbjct: 242 SLFY---CFCKRGCAAEAEALFDHMEVDGYYVDKVMYTCLMKEYCKDNNMTMAMRLYLRM 298

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             + F      +N L+      G  ++   + ++M ++ +  +V TY+I+I S    G  
Sbjct: 299 VERSFELDPCIFNTLIHGFMKLGMLDKGRVMFSQMIKKGVQSNVFTYHIMIGSYCKEGNV 358

Query: 326 EQAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
           + A  +    T S   +     Y  +I    K+G +D  V  L +M+     P+  TY  
Sbjct: 359 DYALRLFVNNTGSEDISRNVHCYTNLIFGFYKKGGMDKAVDLLMRMLDNGIVPDHITYFV 418

Query: 385 -IAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKN---------------------- 418
            + ML +  +++ A  I QS+   G   N P+ D   N                      
Sbjct: 419 LLKMLPKCHELKYAMVILQSILDNGCGINPPVIDDLGNIEVKVESLLGEIARKDANLAAV 478

Query: 419 ----VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
               V + LC + N   A   + +M   G TP  ++Y+S+++ + +E ++++   +  I+
Sbjct: 479 GLAVVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNII 538

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSI------------------------------- 503
           +E D++PD+D Y  ++   CK    D +                                
Sbjct: 539 QELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRV 598

Query: 504 ----EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
               E F +M+  G  P+EI Y I++   A    +D A  L++E+
Sbjct: 599 VEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEV 643



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/512 (22%), Positives = 226/512 (44%), Gaps = 76/512 (14%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           T L++   K     KAV ++  ++ +GI+PD   Y  L+  L +   + YAM +++ + +
Sbjct: 382 TNLIFGFYKKGGMDKAVDLLMRMLDNGIVPDHITYFVLLKMLPKCHELKYAMVILQSILD 441

Query: 163 HG-----------------------------FQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
           +G                                  V    +   LCS      +L  ++
Sbjct: 442 NGCGINPPVIDDLGNIEVKVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIE 501

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
           ++   G  P  F+Y+ +++  ++E  +++   L++ I      P++ +Y +++  LCK+ 
Sbjct: 502 KMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKN 561

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             + A  +   +   G  P+V  Y+ ++ SL  +GR  EA    A+M E  + P  + Y 
Sbjct: 562 DRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYM 621

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           I+I + + +GR ++A E+++E+ +     ++ +Y  +I+   K G ++   Q LD+M+  
Sbjct: 622 IMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLED 681

Query: 374 RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC---------------- 416
             SPN   Y A I    ++G  + +F +F  +G  +N   HD+                 
Sbjct: 682 GLSPNVVLYTALIGHFLKKGDFKFSFTLFGLMG--ENDIKHDHIAYITLLSGLWRAMARK 739

Query: 417 --KNVI------SMLCRKGNTYP--------------AFQM-LYEMTKCGFTPDSYTYSS 453
             + VI       +L R   T P              +F M +    K    P+ Y +++
Sbjct: 740 KKRQVIVEPGKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKKSIIPNLYLHNT 799

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           ++ G C  G LDEA      +++   +P++  Y  L+    +    + +I++F+      
Sbjct: 800 IITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFE---GTN 856

Query: 514 CVPNEITYTILVEGLA-FENELDIAAGLMKEL 544
           C P+++ Y+ L++GL  F+  LD A  LM E+
Sbjct: 857 CEPDQVMYSTLLKGLCDFKRPLD-ALALMLEM 887



 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 191/448 (42%), Gaps = 41/448 (9%)

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
           LC + N   A+  +EK+   G      +YN+++K L     +     L++ + +    P+
Sbjct: 487 LCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPD 546

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           V TY  ++    K+   D A  ++D +   G  P +  Y+ ++  L K+GR  +A E F 
Sbjct: 547 VDTYLIVVNELCKKNDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFA 606

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
            +   G  P  ++Y I++ +    GR +EAN L+ E+ +  L PS  TY +LI+     G
Sbjct: 607 KMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMG 666

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE---- 379
             E+  + LD+M   G +     Y  +I    K+G           M       +     
Sbjct: 667 MMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYI 726

Query: 380 ----GTYNAIA------MLCEQGK---------VQEAFFIFQSLGN-------------- 406
               G + A+A      ++ E GK          +    I  SLGN              
Sbjct: 727 TLLSGLWRAMARKKKRQVIVEPGKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKV 786

Query: 407 KQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
           K++   + Y  N +I+  C  G    A+  L  M K G  P+  TY+ L++     G ++
Sbjct: 787 KKSIIPNLYLHNTIITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIE 846

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            A+++F   E  +  PD   Y+ L+ G C ++R   ++ +   M   G  PN+ +Y  L+
Sbjct: 847 SAIDLF---EGTNCEPDQVMYSTLLKGLCDFKRPLDALALMLEMQKSGINPNKDSYEKLL 903

Query: 526 EGLAFENELDIAAGLMKELYMREVLSRS 553
           + L +      A  ++K++   ++  RS
Sbjct: 904 QCLCYSRLTMEAVKVVKDMAALDIWPRS 931



 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/518 (21%), Positives = 216/518 (41%), Gaps = 67/518 (12%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIV--GSGI------ 130
           R ++A  HL+ ++  G  P    ++ ++ +LC  ++  +A    E +   GSG+      
Sbjct: 146 RFDEARAHLDRIIASGYAPSRNSSSLVVDELCNQDRFLEAFHCFEQVKERGSGLWLWCCK 205

Query: 131 -----------------IPDAAC-----------YTHLVNFLCRRGNIGYAMQLVEKVEE 162
                            + D  C           Y  L    C+RG    A  L + +E 
Sbjct: 206 RLFKGLCGHGHLNEAIGMLDTLCGMTRMPLPVNLYKSLFYCFCKRGCAAEAEALFDHMEV 265

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            G+    V Y  L+K  C    +  +++L  R+ ++  + +   ++ L+ G  K   +D+
Sbjct: 266 DGYYVDKVMYTCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDK 325

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF-RDLPAKGFSPSVVSYNILL 281
              +   +I +G + N+ +Y++++   CKEG  + A+ LF  +  ++  S +V  Y  L+
Sbjct: 326 GRVMFSQMIKKGVQSNVFTYHIMIGSYCKEGNVDYALRLFVNNTGSEDISRNVHCYTNLI 385

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL-SLH------------------ 322
                +G  ++A  LL  M +  + P  +TY +L+  L   H                  
Sbjct: 386 FGFYKKGGMDKAVDLLMRMLDNGIVPDHITYFVLLKMLPKCHELKYAMVILQSILDNGCG 445

Query: 323 ---------GRTEQAFE-VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
                    G  E   E +L E+ R   N+ A     +   LC +      +  +++M+ 
Sbjct: 446 INPPVIDDLGNIEVKVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVN 505

Query: 373 RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
              +P   +YN+ I  L ++  +++   +   +      P  D    V++ LC+K +   
Sbjct: 506 LGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDA 565

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           AF ++  M + G  P    YSS++  + ++G + EA E F  + E+   PD   Y  +I 
Sbjct: 566 AFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMIN 625

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
            + +  R D + E+ + +V     P+  TYT+L+ G  
Sbjct: 626 TYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFV 663



 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 195/473 (41%), Gaps = 49/473 (10%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           A   +E MV  G  P       ++  L + N       ++ +I     +PD   Y  +VN
Sbjct: 496 ALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVN 555

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
            LC++ +   A  +++ +EE G +     Y++++  L   G++ ++ +   ++ + G++P
Sbjct: 556 ELCKKNDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQP 615

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +   Y  ++    +   +DEA +L+++++     P+  +Y VL++G  K G  E   +  
Sbjct: 616 DEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYL 675

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI------ 316
             +   G SP+VV Y  L+     +G ++ +  L   M E D+    + Y  L+      
Sbjct: 676 DKMLEDGLSPNVVLYTALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYITLLSGLWRA 735

Query: 317 --------------------------------TSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
                                           +SL  +G    A EV+ ++ +S   +  
Sbjct: 736 MARKKKRQVIVEPGKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKKS---IIP 792

Query: 345 TSY--NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIF 401
             Y  N II   C  G++D     L+ M      PN  TY  +     E G ++ A  +F
Sbjct: 793 NLYLHNTIITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLF 852

Query: 402 QSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           +      NC P       ++  LC       A  ++ EM K G  P+  +Y  L++ +C 
Sbjct: 853 EG----TNCEPDQVMYSTLLKGLCDFKRPLDALALMLEMQKSGINPNKDSYEKLLQCLCY 908

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
             +  EA+++ + +   D  P   N+  LI   C+ ++   +  +F  MV  G
Sbjct: 909 SRLTMEAVKVVKDMAALDIWPRSINHTWLIYILCEEKKLREARALFAIMVQSG 961



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 190/438 (43%), Gaps = 43/438 (9%)

Query: 58  DSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARK 117
           D+   + N    KND+ +       AF  ++ M   G +P VA  + ++  L K  +  +
Sbjct: 548 DTYLIVVNELCKKNDRDA-------AFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVE 600

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A      ++ SGI PD   Y  ++N   R G I  A +LVE+V +H  +  + TY  L+ 
Sbjct: 601 AEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLIS 660

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
           G    G + +  Q LD++ + GL PNV  Y+ L+ G + ++G     K    +    GE 
Sbjct: 661 GFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALI-GHFLKKG---DFKFSFTLFGLMGEN 716

Query: 238 NL----VSYNVLLTGLCKE-------------GRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           ++    ++Y  LL+GL +              G+ +    L R  P      S+ +Y   
Sbjct: 717 DIKHDHIAYITLLSGLWRAMARKKKRQVIVEPGKEKLLQRLIRTKPLVSIPSSLGNY--- 773

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
                  G    A  ++ ++ ++ + P++  +N +IT     GR ++A+  L+ M + G 
Sbjct: 774 -------GSKSFAMEVIGKV-KKSIIPNLYLHNTIITGYCAAGRLDEAYNHLESMQKEGI 825

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFF 399
                +Y  ++    + G ++  +   +   C    P++  Y+ +   LC+  +  +A  
Sbjct: 826 VPNLVTYTILMKSHIEAGDIESAIDLFEGTNCE---PDQVMYSTLLKGLCDFKRPLDALA 882

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +   +      P  D  + ++  LC    T  A +++ +M      P S  ++ L+  +C
Sbjct: 883 LMLEMQKSGINPNKDSYEKLLQCLCYSRLTMEAVKVVKDMAALDIWPRSINHTWLIYILC 942

Query: 460 REGMLDEALEIFRILEEN 477
            E  L EA  +F I+ ++
Sbjct: 943 EEKKLREARALFAIMVQS 960



 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 90  MVGKGQK---PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           ++GK +K   P++     ++   C + +  +A   +E +   GI+P+   YT L+     
Sbjct: 782 VIGKVKKSIIPNLYLHNTIITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIE 841

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G+I  A+ L E       +   V Y+TL+KGLC   +   +L L+  + K G+ PN  +
Sbjct: 842 AGDIESAIDLFEGTN---CEPDQVMYSTLLKGLCDFKRPLDALALMLEMQKSGINPNKDS 898

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y  LL+     R   EA+K++ D+ A    P  +++  L+  LC+E +  +A  LF  + 
Sbjct: 899 YEKLLQCLCYSRLTMEAVKVVKDMAALDIWPRSINHTWLIYILCEEKKLREARALFAIMV 958

Query: 267 AKGFS 271
             G S
Sbjct: 959 QSGRS 963



 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 20/242 (8%)

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM----------ICR 373
           R ++A   LD +  SG+  +  S + ++  LC + +      C +Q+           C+
Sbjct: 146 RFDEARAHLDRIIASGYAPSRNSSSLVVDELCNQDRFLEAFHCFEQVKERGSGLWLWCCK 205

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPA 432
           R             LC  G + EA  +  +L      P+  +  K++    C++G    A
Sbjct: 206 RLFKG---------LCGHGHLNEAIGMLDTLCGMTRMPLPVNLYKSLFYCFCKRGCAAEA 256

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
             +   M   G+  D   Y+ L++  C++  +  A+ ++  + E  +  D   +N LI G
Sbjct: 257 EALFDHMEVDGYYVDKVMYTCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHG 316

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
           F K    D    +F +M+ KG   N  TY I++     E  +D A  L       E +SR
Sbjct: 317 FMKLGMLDKGRVMFSQMIKKGVQSNVFTYHIMIGSYCKEGNVDYALRLFVNNTGSEDISR 376

Query: 553 ST 554
           + 
Sbjct: 377 NV 378


>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
           chr1:28119237-28122314 REVERSE LENGTH=862
          Length = 862

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 203/459 (44%), Gaps = 6/459 (1%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KP+    T ++  L +     K + V + +   G+      YT L+N   R G    +++
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS--LQLLDRLTKKGLKPNVFTYSFLLEG 213
           L+++++        +TYNT++   C+ G L+    L L   +  +G++P++ TY+ LL  
Sbjct: 198 LLDRMKNEKISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLS- 255

Query: 214 AYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           A   RG+ +  +++   +  GG  P+L +Y+ L+    K  R E   +L  ++ + G  P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            + SYN+LL +    G  +EA G+  +M     +P+  TY++L+      GR +   ++ 
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            EM  S  +  A +YN +I    + G    VV     M+     P+  TY  I   C +G
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 393 KVQE-AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
            + E A  I Q +      P       VI    +      A      M + G  P   T+
Sbjct: 436 GLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETF 495

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
            SL+    R G++ E+  I   L ++    + D +NA I  + +  + + +++ +  M  
Sbjct: 496 HSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEK 555

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
             C P+E T   ++   +F   +D      +E+   ++L
Sbjct: 556 SRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDIL 594



 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/502 (21%), Positives = 214/502 (42%), Gaps = 10/502 (1%)

Query: 51  QISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLC 110
           QI   P + I+T+    +G+      E  L+      + M  +G    V   T L+    
Sbjct: 134 QIWCKPNEHIYTIMISLLGR------EGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYG 187

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA--MQLVEKVEEHGFQTG 168
           ++ +   ++ +++ +    I P    Y  ++N  C RG + +   + L  ++   G Q  
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVIN-ACARGGLDWEGLLGLFAEMRHEGIQPD 246

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
            VTYNTL+      G  +++  +   +   G+ P++ TYS L+E   K R +++   LL 
Sbjct: 247 IVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLG 306

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           ++ + G  P++ SYNVLL    K G  ++A+ +F  + A G +P+  +Y++LL      G
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           R+++   L  EM   +  P   TYNILI      G  ++   +  +M          +Y 
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV-QEAFFIFQSLGNK 407
            II    K G  +   + L  M      P+   Y  +     Q  + +EA   F ++   
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV 486

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
            + P  +   +++    R G    +  +L  +   G   +  T+++ +    + G  +EA
Sbjct: 487 GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           ++ +  +E++   PD     A++  +   +  D   E F+ M     +P+ + Y +++  
Sbjct: 547 VKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAV 606

Query: 528 LAFENELDIAAGLMKELYMREV 549
                  D    L++E+    V
Sbjct: 607 YGKTERWDDVNELLEEMLSNRV 628



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 164/408 (40%), Gaps = 16/408 (3%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +K   + +A      M   G  P+    + LL    +S +     ++   +  S   PDA
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ-SLQLLD 193
           A Y  L+      G     + L   + E   +    TY  ++   C  G L++ + ++L 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFA-CGKGGLHEDARKILQ 446

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            +T   + P+   Y+ ++E   +    +EA+   + +   G  P++ +++ LL    + G
Sbjct: 447 YMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG 506

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             +++  +   L   G   +  ++N  + +    G++EEA     +M++    P   T  
Sbjct: 507 LVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLE 566

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            +++  S     ++  E  +EM  S    +   Y  ++A   K  + D V + L++M+  
Sbjct: 567 AVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSN 626

Query: 374 RYSPNEGTYNAIAMLC-----EQGKVQEAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKG 427
           R S     +  I  +      +    Q   ++   L N + C +   +   ++  L   G
Sbjct: 627 RVS---NIHQVIGQMIKGDYDDDSNWQIVEYVLDKL-NSEGCGLGIRFYNALLDALWWLG 682

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM----CREGMLDEALEIF 471
               A ++L E TK G  P+ +  + LV  +      EG +  AL ++
Sbjct: 683 QKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVW 730


>AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19896027-19897442 FORWARD
           LENGTH=471
          Length = 471

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 147/279 (52%), Gaps = 2/279 (0%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRV-MEMIVGSGIIPDAACYT 138
            +DA    + MV K  KP       L++ LCK ++ ++A+++  +M+   G+ P    Y 
Sbjct: 168 FDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYA 227

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+  LC+ G + +A +L ++  E   +     Y+TL+  L   G+ N+   +L+ +++K
Sbjct: 228 SLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEK 287

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G KP+  TY+ L+ G   E   + A ++LD+++ +G +P+++SYN++L    +  + E+A
Sbjct: 288 GCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEA 347

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             LF D+P +G SP  +SY I+   LC   ++EEA  +L EM  +   P        +  
Sbjct: 348 TYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQK 407

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
           L   G+ E   +V+  + R G    A  ++ +I  +CKE
Sbjct: 408 LCESGKLEILSKVISSLHR-GIAGDADVWSVMIPTMCKE 445



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 174/379 (45%), Gaps = 39/379 (10%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           I+P    + +++NF  R      A+ + +++ ++  Q    + N+L+  L   G+L +  
Sbjct: 79  IVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMK 138

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           + L  + + G KP+  TY+ L+ G  +    D+A+KL D+++ +  +P  V++  L+ GL
Sbjct: 139 ERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGL 197

Query: 250 CKEGRTEDAIELFRD-LPAKGFSPSVVSYNILLRSLC---------------YE------ 287
           CK+ R ++A+++  D L   G  P+V  Y  L+++LC               YE      
Sbjct: 198 CKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVD 257

Query: 288 --------------GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
                         GR  E + +L EM E+   P  VTYN+LI    +   +E A  VLD
Sbjct: 258 AAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLD 317

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQG 392
           EM   G      SYN I+    +  K +      + M  R  SP+  +Y  +   LCE  
Sbjct: 318 EMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGL 377

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           + +EA  I   +  K   P  D  +  +  LC  G      +++  + + G   D+  +S
Sbjct: 378 QFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHR-GIAGDADVWS 436

Query: 453 SLVRGMCREGMLDEALEIF 471
            ++  MC+E ++ +++++ 
Sbjct: 437 VMIPTMCKEPVISDSIDLL 455



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 139/276 (50%), Gaps = 1/276 (0%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPD      L++   +S     A+++ + +V   + P    +  L++ LC+   +  A++
Sbjct: 149 KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALK 208

Query: 156 LV-EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
           +  + ++ +G +     Y +L+K LC  G+L+ + +L D   +  +K +   YS L+   
Sbjct: 209 MKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSL 268

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            K    +E   +L+++  +G +P+ V+YNVL+ G C E  +E A  +  ++  KG  P V
Sbjct: 269 IKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDV 328

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           +SYN++L       +WEEA  L  +M     SP  ++Y I+   L    + E+A  +LDE
Sbjct: 329 ISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDE 388

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           M   G+          + +LC+ GK++++ + +  +
Sbjct: 389 MLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSL 424



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           G  E+    L+ +DE    P   TYNILI   S  G  + A ++ DEM +     T  ++
Sbjct: 132 GELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTF 190

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYS--PNEGTYNA-IAMLCEQGKVQEAFFIF-QS 403
             +I  LCK+ +V   ++    M+ + Y   P    Y + I  LC+ G++  AF +  ++
Sbjct: 191 GTLIHGLCKDSRVKEALKMKHDML-KVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEA 249

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
              K       Y   +IS L + G +     +L EM++ G  PD+ TY+ L+ G C E  
Sbjct: 250 YEGKIKVDAAIY-STLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVEND 308

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
            + A  +   + E    PD+ +YN ++  F + ++ + +  +F+ M  +GC P+ ++Y I
Sbjct: 309 SESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRI 368

Query: 524 LVEGLAFENELDIAAGLMKELYMREVLSRSTVDRL 558
           + +GL    + + AA ++ E+  +    R   DRL
Sbjct: 369 VFDGLCEGLQFEEAAVILDEMLFKGYKPRR--DRL 401



 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 35/325 (10%)

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           E MK     I   G+P+  +YN+L+ G  + G  +DA++LF ++  K   P+ V++  L+
Sbjct: 135 EKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLI 194

Query: 282 RSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
             LC + R +EA  +  +M +   + P+V  Y  LI +L   G    AF++ DE      
Sbjct: 195 HGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKI 254

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFI 400
            V A  Y+ +I+ L K G+ + V   L++M  +   P+  TYN +               
Sbjct: 255 KVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVL--------------- 299

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
                              I+  C + ++  A ++L EM + G  PD  +Y+ ++    R
Sbjct: 300 -------------------INGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFR 340

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
               +EA  +F  +      PD  +Y  +  G C+  + + +  I   M+ KG  P    
Sbjct: 341 IKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDR 400

Query: 521 YTILVEGLAFENELDIAAGLMKELY 545
               ++ L    +L+I + ++  L+
Sbjct: 401 LEGFLQKLCESGKLEILSKVISSLH 425



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 7/190 (3%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  R N+  + LE M  KG KPD      L+   C  N +  A RV++ +V  G+ PD  
Sbjct: 270 KAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVI 329

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  ++    R      A  L E +   G    T++Y  +  GLC   +  ++  +LD +
Sbjct: 330 SYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEM 389

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA---RGGEPNLVSYNVLLTGLCKE 252
             KG KP        LEG  ++      +++L  +I+   RG   +   ++V++  +CKE
Sbjct: 390 LFKGYKPR----RDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCKE 445

Query: 253 GRTEDAIELF 262
               D+I+L 
Sbjct: 446 PVISDSIDLL 455


>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
           chr1:19312078-19314145 REVERSE LENGTH=650
          Length = 650

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 189/401 (47%), Gaps = 49/401 (12%)

Query: 187 QSLQLLDRLTKK-GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVL 245
           + LQ+  RL KK  LK N FTY  LL+   + R   +A  +  +I   G + ++ +YN+L
Sbjct: 185 EDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNML 244

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL 305
           L  L K+   E A ++F D+  +       +Y I++R++   G+ +EA GL  EM  E L
Sbjct: 245 LDALAKD---EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGL 301

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEG---KVDL 362
           + +VV YN L+  L+     ++A +V   M  +G      +Y+ ++  L  EG   ++D 
Sbjct: 302 TLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDG 361

Query: 363 VVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
           VV+     I +RY   +G Y+  +  L + G V EA  +F  + +       D   +++ 
Sbjct: 362 VVE-----ISKRYM-TQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLE 415

Query: 422 MLCRKGNTYPAFQMLYE-----------------------------------MTKCGFTP 446
            LC  G T  A +ML +                                   M K G +P
Sbjct: 416 SLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSP 475

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D +TY+ L+    R G +DEA+ IF  LE +D  PDI +YN+LI    K    D +   F
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           + M  KG  P+ +TY+ L+E       +++A  L +E+ ++
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVK 576



 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 197/424 (46%), Gaps = 13/424 (3%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           LL    +S    KA  V   I   G   D   Y  L++ L +      A Q+ E +++  
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRH 265

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
            +    TY  +++ +   GK ++++ L + +  +GL  NV  Y+ L++   K + VD+A+
Sbjct: 266 CRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAI 325

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEG---RTEDAIELFRDLPAKGFSPSVVSYNILL 281
           ++   ++  G  PN  +Y++LL  L  EG   R +  +E+ +    +G       Y+ L+
Sbjct: 326 QVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGI------YSYLV 379

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
           R+L   G   EA+ L  +M    +     +Y  ++ SL   G+T +A E+L ++   G  
Sbjct: 380 RTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVV 439

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI 400
                YN + + L K  ++  +    ++M     SP+  TYN  IA     G+V EA  I
Sbjct: 440 TDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINI 499

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F+ L      P      ++I+ L + G+   A     EM + G  PD  TYS+L+    +
Sbjct: 500 FEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGK 559

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
              ++ A  +F  +      P+I  YN L+    K  RT  +++++ +M  +G  P+ IT
Sbjct: 560 TERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSIT 619

Query: 521 YTIL 524
           YT+L
Sbjct: 620 YTVL 623



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  ++  LC  G    A++++ K+ E G  T T+ YNT+   L    +++    L +++ 
Sbjct: 410 YMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK 469

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K G  P++FTY+ L+    +   VDEA+ + +++     +P+++SYN L+  L K G  +
Sbjct: 470 KDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVD 529

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A   F+++  KG +P VV+Y+ L+       R E A  L  EM  +   P++VTYNIL+
Sbjct: 530 EAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILL 589

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
             L  +GRT +A ++  +M + G    + +Y  ++ RL
Sbjct: 590 DCLEKNGRTAEAVDLYSKMKQQGLTPDSITYT-VLERL 626



 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 173/375 (46%), Gaps = 12/375 (3%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E M  +  + D    T ++  + +  K  +AV +   ++  G+  +   Y  L+  L +
Sbjct: 258 FEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAK 317

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHG---KLNQSLQLLDRLTKKGLKPN 203
              +  A+Q+  ++ E G +    TY+ L+  L + G   +L+  +++  R   +G+   
Sbjct: 318 GKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGI--- 374

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
              YS+L+    K   V EA +L  D+ +   +    SY  +L  LC  G+T +AIE+  
Sbjct: 375 ---YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLS 431

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
            +  KG     + YN +  +L    +    + L  +M ++  SP + TYNILI S    G
Sbjct: 432 KIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
             ++A  + +E+ RS       SYN +I  L K G VD       +M  +  +P+  TY+
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551

Query: 384 AIAMLC--EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
            + M C  +  +V+ A+ +F+ +  K   P       ++  L + G T  A  +  +M +
Sbjct: 552 TL-MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQ 610

Query: 442 CGFTPDSYTYSSLVR 456
            G TPDS TY+ L R
Sbjct: 611 QGLTPDSITYTVLER 625



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           +L  LC + K  +A+ ++  I   G++ D   Y  + + L +   I +   L EK+++ G
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
                 TYN L+      G++++++ + + L +   KP++ +Y+ L+    K   VDEA 
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAH 532

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
               ++  +G  P++V+Y+ L+    K  R E A  LF ++  KG  P++V+YNILL  L
Sbjct: 533 VRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNIL--ITSLSLHGRT 325
              GR  EA  L ++M ++ L+P  +TY +L  + S+S HG++
Sbjct: 593 EKNGRTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVS-HGKS 634



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 32/331 (9%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +G   +V     L+  L K     KA++V   +V +G  P+   Y+ L+N L   G 
Sbjct: 296 MITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355

Query: 150 IGYAMQLVEKVEEHGFQ------------TGTVT--------------------YNTLVK 177
           +     +VE  + +  Q             G V+                    Y ++++
Sbjct: 356 LVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLE 415

Query: 178 GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP 237
            LC  GK  +++++L ++ +KG+  +   Y+ +     K + +     L + +   G  P
Sbjct: 416 SLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSP 475

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           ++ +YN+L+    + G  ++AI +F +L      P ++SYN L+  L   G  +EA+   
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            EM E+ L+P VVTY+ L+       R E A+ + +EM   G      +YN ++  L K 
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKN 595

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
           G+    V    +M  +  +P+  TY  +  L
Sbjct: 596 GRTAEAVDLYSKMKQQGLTPDSITYTVLERL 626



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 68  VGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG 127
           +GK  Q S    ++D F   E M   G  PD+     L+    +  +  +A+ + E +  
Sbjct: 452 LGKLKQIS---HIHDLF---EKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELER 505

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           S   PD   Y  L+N L + G++  A    ++++E G     VTY+TL++      ++  
Sbjct: 506 SDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEM 565

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVL 245
           +  L + +  KG +PN+ TY+ LL+   K     EA+ L   +  +G  P+ ++Y VL
Sbjct: 566 AYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 41/291 (14%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           ++ + NIL+    + G  E+    L  + + DL  +  TY  L+ +        +AF+V 
Sbjct: 170 NISTVNILI---GFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVY 226

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQ 391
            E+ R G  +   +YN ++  L K+ K   V + + +  CRR   +E TY   I  +   
Sbjct: 227 CEIRRGGHKLDIFAYNMLLDALAKDEKACQVFEDMKKRHCRR---DEYTYTIMIRTMGRI 283

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY-PAFQMLYEMTKCGFTPDSYT 450
           GK  EA  +F  +   +   ++    N +  +  KG     A Q+   M + G  P+ YT
Sbjct: 284 GKCDEAVGLFNEMIT-EGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYT 342

Query: 451 --------------------------------YSSLVRGMCREGMLDEALEIFRILEEND 478
                                           YS LVR + + G + EA  +F  +    
Sbjct: 343 YSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFP 402

Query: 479 YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
              + D+Y +++   C   +T  +IE+  ++  KG V + + Y  +   L 
Sbjct: 403 VKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALG 453


>AT5G21222.1 | Symbols:  | protein kinase family protein |
           chr5:7209422-7213700 FORWARD LENGTH=831
          Length = 831

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 203/437 (46%), Gaps = 10/437 (2%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           DV   T+L+  L +  + ++A  +   ++  G  P    YT LV  L R+ +    + L+
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            KVE++G +  T+ +N ++      G L+Q++++ +++ + G KP   T++ L++G  K 
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 218 RGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
             ++E+ +LLD ++     +PN  + N+L+   C + + E+A  +   + + G  P VV+
Sbjct: 438 GKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVT 497

Query: 277 YNILLRSLCYEGRWEEANGL-LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +N L ++    G    A  + +  M    + P+V T   ++      G+ E+A      M
Sbjct: 498 FNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRM 557

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY----NAIAMLCEQ 391
              G +     +N +I        +D V + +D M      P+  T+    NA + + + 
Sbjct: 558 KELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 617

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
            + +E +      G   +  +H +   +     R G    A Q+L +M K G  P+   Y
Sbjct: 618 KRCEEIYTDMLEGGIDPD--IHAFSI-LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674

Query: 452 SSLVRGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           + ++ G C  G + +A++++ ++       P++  Y  LI GF + ++   + E+ + M 
Sbjct: 675 TQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDME 734

Query: 511 NKGCVPNEITYTILVEG 527
            K  VP   T  ++ +G
Sbjct: 735 GKNVVPTRKTMQLIADG 751



 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 187/412 (45%), Gaps = 14/412 (3%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R  +A      ++ +G KP +   T L+  L +       + ++  +  +G+ PD   + 
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 393

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK- 197
            ++N     GN+  AM++ EK++E G +    T+NTL+KG    GKL +S +LLD + + 
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRD 453

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT-- 255
           + L+PN  T + L++    +R ++EA  ++  + + G +P++V++N L     + G T  
Sbjct: 454 EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCT 513

Query: 256 -EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            ED I + R L  K   P+V +   ++   C EG+ EEA      M E  + P++  +N 
Sbjct: 514 AEDMI-IPRMLHNK-VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNS 571

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI         +   EV+D M   G      +++ ++      G +    +    M+   
Sbjct: 572 LIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGG 631

Query: 375 YSPNEGTYNAIAM----LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
             P+   ++ +A       E  K ++     +  G + N  ++     +IS  C  G   
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIY---TQIISGWCSAGEMK 688

Query: 431 PAFQMLYEMTK-CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            A Q+  +M    G +P+  TY +L+ G        +A E+ + +E  + +P
Sbjct: 689 KAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVP 740



 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 166/366 (45%), Gaps = 42/366 (11%)

Query: 230 IIARGGEP--NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           +I  GG    ++ S   L+ GL + GR ++A  +F  L  +G  PS+++Y  L+ +L  +
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
             +     L++++++  L P  + +N +I + S  G  +QA ++ ++M  SG   TA+++
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTF 427

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRY-SPNEGTYNA-IAMLCEQGKVQEAFFI---FQ 402
           N +I    K GK++   + LD M+      PN+ T N  +   C Q K++EA+ I    Q
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487

Query: 403 SLGNKQN-----------------CPMHDY----------------CKNVISMLCRKGNT 429
           S G K +                 C   D                 C  +++  C +G  
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A +  Y M + G  P+ + ++SL++G      +D   E+  ++EE    PD+  ++ L
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTL 607

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
           +  +          EI+  M+  G  P+   ++IL +G A   E + A  ++ +  MR+ 
Sbjct: 608 MNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQ--MRKF 665

Query: 550 LSRSTV 555
             R  V
Sbjct: 666 GVRPNV 671



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 182/391 (46%), Gaps = 16/391 (4%)

Query: 164 GFQTGTVTYNT-LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
           G   G V   T L+ GL   G+  ++  + + L ++G KP++ TY+ L+    +++    
Sbjct: 313 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHS 372

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
            + L+  +   G +P+ + +N ++    + G  + A+++F  +   G  P+  ++N L++
Sbjct: 373 LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 432

Query: 283 SLCYEGRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
                G+ EE++ LL  M  +E L P+  T NIL+ +     + E+A+ ++ +M   G  
Sbjct: 433 GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVK 492

Query: 342 VTATSYNPIIARLCKEGKV----DLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQE 396
               ++N +     + G      D+++    +M+  +  PN  T   I    CE+GK++E
Sbjct: 493 PDVVTFNTLAKAYARIGSTCTAEDMIIP---RMLHNKVKPNVRTCGTIVNGYCEEGKMEE 549

Query: 397 A---FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           A   F+  + LG   N  + +   ++I       +     +++  M + G  PD  T+S+
Sbjct: 550 ALRFFYRMKELGVHPNLFVFN---SLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+      G +    EI+  + E    PDI  ++ L  G+ +    + + +I  +M   G
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             PN + YT ++ G     E+  A  + K++
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697



 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 146/322 (45%), Gaps = 10/322 (3%)

Query: 67  RVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIV 126
           ++GK ++ S   RL D  L  E +     +P+      L+   C   K  +A  ++  + 
Sbjct: 436 KIGKLEESS---RLLDMMLRDEML-----QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487

Query: 127 GSGIIPDAACYTHLVNFLCRRGNIGYAMQLV-EKVEEHGFQTGTVTYNTLVKGLCSHGKL 185
             G+ PD   +  L     R G+   A  ++  ++  +  +    T  T+V G C  GK+
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547

Query: 186 NQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVL 245
            ++L+   R+ + G+ PN+F ++ L++G      +D   +++D +   G +P++V+++ L
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTL 607

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL 305
           +      G  +   E++ D+   G  P + +++IL +     G  E+A  +L +M +  +
Sbjct: 608 MNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGV 667

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTR-SGFNVTATSYNPIIARLCKEGKVDLVV 364
            P+VV Y  +I+     G  ++A +V  +M    G +   T+Y  +I    +  +     
Sbjct: 668 RPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAE 727

Query: 365 QCLDQMICRRYSPNEGTYNAIA 386
           + L  M  +   P   T   IA
Sbjct: 728 ELLKDMEGKNVVPTRKTMQLIA 749



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%)

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           E+G+VQ   F          C        +++ L  +G    A  +   + + G  P   
Sbjct: 296 EEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLI 355

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY++LV  + R+      L +   +E+N   PD   +NA+I    +    D +++IF++M
Sbjct: 356 TYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM 415

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
              GC P   T+  L++G     +L+ ++ L+  +   E+L
Sbjct: 416 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456


>AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23106600-23108399 REVERSE
           LENGTH=599
          Length = 599

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 166/358 (46%), Gaps = 39/358 (10%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+ + E ++++ F+ G  T N L+  L    KL +  Q+L    K+   PN+ TY+ LL 
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 306

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  + R + EA ++ +D+I +G +P++V++NV+L GL +  +  DAI+LF  + +KG  P
Sbjct: 307 GWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 366

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +V SY I++R  C +   E A     +M +  L P    Y  LIT      + +  +E+L
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 426

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            EM   G      +YN +I  +  +   +   +  ++MI     P+  T+N I       
Sbjct: 427 KEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMI------- 479

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE-MTKCGFTPDSYTY 451
              +++F+                             Y   + ++E M K G  PD  +Y
Sbjct: 480 --MKSYFM--------------------------ARNYEMGRAVWEEMIKKGICPDDNSY 511

Query: 452 SSLVRGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           + L+RG+  EG   EA      +L++    P ID YN     F +  + ++  E+ QR
Sbjct: 512 TVLIRGLIGEGKSREACRYLEEMLDKGMKTPLID-YNKFAADFHRGGQPEIFEELAQR 568



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 3/276 (1%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   YT L+N  CR  N+  A ++   + + G +   V +N +++GL    K + +++L
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKL 355

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +  KG  PNV +Y+ ++    K+  ++ A++  DD++  G +P+   Y  L+TG   
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT 415

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           + + +   EL +++  KG  P   +YN L++ +  +   E A  +  +M + ++ PS+ T
Sbjct: 416 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHT 475

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           +N+++ S  +    E    V +EM + G      SY  +I  L  EGK     + L++M+
Sbjct: 476 FNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEML 535

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNK 407
            +        YN  A    +G   E   IF+ L  +
Sbjct: 536 DKGMKTPLIDYNKFAADFHRGGQPE---IFEELAQR 568



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 166/390 (42%), Gaps = 46/390 (11%)

Query: 160 VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKER 218
            E  GF   + TYN+++  L    +    + +L+ +  KGL     FT +     A KER
Sbjct: 186 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245

Query: 219 ----GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
               G+ E MK     I       + + N LL  L +    ++A  LF  L  + F+P++
Sbjct: 246 KKAVGIFELMKKYKFKIG------VETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 298

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           ++Y +LL   C      EA  +  +M ++ L P +V +N+++  L    +   A ++   
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHV 358

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           M   G      SY  +I   CK+  ++  ++  D M+     P+   Y  +         
Sbjct: 359 MKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL--------- 409

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
                                    I+    +      +++L EM + G  PD  TY++L
Sbjct: 410 -------------------------ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 444

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           ++ M  + M + A  I+  + +N+  P I  +N ++  +   +  ++   +++ M+ KG 
Sbjct: 445 IKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGI 504

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKEL 544
            P++ +YT+L+ GL  E +   A   ++E+
Sbjct: 505 CPDDNSYTVLIRGLIGEGKSREACRYLEEM 534



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 115/237 (48%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +G KPD+     +L  L +S K   A+++  ++   G  P+   YT ++   C++ +
Sbjct: 324 MIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSS 383

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A++  + + + G Q     Y  L+ G  +  KL+   +LL  + +KG  P+  TY+ 
Sbjct: 384 METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNA 443

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++    ++  + A ++ + +I    EP++ ++N+++         E    ++ ++  KG
Sbjct: 444 LIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKG 503

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             P   SY +L+R L  EG+  EA   L EM ++ +   ++ YN         G+ E
Sbjct: 504 ICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPE 560



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 88/203 (43%), Gaps = 35/203 (17%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+  +  A  + + MV  G +P                                   DAA
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQP-----------------------------------DAA 404

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L+     +  +    +L+++++E G      TYN L+K + +      + ++ +++
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM 464

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +  ++P++ T++ +++  +  R  +    + +++I +G  P+  SY VL+ GL  EG++
Sbjct: 465 IQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKS 524

Query: 256 EDAIELFRDLPAKGFSPSVVSYN 278
            +A     ++  KG    ++ YN
Sbjct: 525 REACRYLEEMLDKGMKTPLIDYN 547


>AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4792072-4793868 REVERSE
           LENGTH=598
          Length = 598

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 39/358 (10%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+ + E ++++ F+ G  T N L+  L    KL +  Q+L    K+   PN+ TY+ LL 
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 305

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  + R + EA ++ +D+I  G +P++V++NV+L GL +  +  DAI+LF  + +KG  P
Sbjct: 306 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 365

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +V SY I++R  C +   E A     +M +  L P    Y  LIT      + +  +E+L
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 425

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            EM   G      +YN +I  +  +   +   +  ++MI     P+  T+N I       
Sbjct: 426 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMI------- 478

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY-EMTKCGFTPDSYTY 451
              +++F+                             Y   + ++ EM K G  PD  +Y
Sbjct: 479 --MKSYFV--------------------------ARNYEMGRAVWDEMIKKGICPDDNSY 510

Query: 452 SSLVRGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           + L+RG+  EG   EA      +L++    P ID YN     F +  + ++  E+ QR
Sbjct: 511 TVLIRGLISEGKSREACRYLEEMLDKGMKTPLID-YNKFAADFHRGGQPEIFEELAQR 567



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 134/276 (48%), Gaps = 3/276 (1%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   YT L+N  CR  N+  A ++   + +HG +   V +N +++GL    K + +++L
Sbjct: 295 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 354

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +  KG  PNV +Y+ ++    K+  ++ A++  DD++  G +P+   Y  L+TG   
Sbjct: 355 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT 414

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           + + +   EL +++  KG  P   +YN L++ +  +   E    +  +M + ++ PS+ T
Sbjct: 415 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHT 474

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           +N+++ S  +    E    V DEM + G      SY  +I  L  EGK     + L++M+
Sbjct: 475 FNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEML 534

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNK 407
            +        YN  A    +G   E   IF+ L  +
Sbjct: 535 DKGMKTPLIDYNKFAADFHRGGQPE---IFEELAQR 567



 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 46/390 (11%)

Query: 160 VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKER 218
            E  GF   + TYN+++  L    +    + +L+ +  KGL     FT +     A KER
Sbjct: 185 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 244

Query: 219 ----GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
               G+ E MK     I       + + N LL  L +    ++A  LF  L  + F+P++
Sbjct: 245 KKAVGIFELMKKYKFKIG------VETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 297

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           ++Y +LL   C      EA  +  +M +  L P +V +N+++  L    +   A ++   
Sbjct: 298 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHV 357

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           M   G      SY  +I   CK+  ++  ++  D M+     P+   Y  +         
Sbjct: 358 MKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL--------- 408

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
                     G +                 +K +T   +++L EM + G  PD  TY++L
Sbjct: 409 ------ITGFGTQ-----------------KKLDT--VYELLKEMQEKGHPPDGKTYNAL 443

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           ++ M  + M +    I+  + +N+  P I  +N ++  +   +  ++   ++  M+ KG 
Sbjct: 444 IKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGI 503

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKEL 544
            P++ +YT+L+ GL  E +   A   ++E+
Sbjct: 504 CPDDNSYTVLIRGLISEGKSREACRYLEEM 533



 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 3/271 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G KPD+     +L  L +S K   A+++  ++   G  P+   YT ++   C++ +
Sbjct: 323 MIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSS 382

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A++  + + + G Q     Y  L+ G  +  KL+   +LL  + +KG  P+  TY+ 
Sbjct: 383 METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNA 442

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++    ++  +   ++ + +I    EP++ ++N+++         E    ++ ++  KG
Sbjct: 443 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 502

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P   SY +L+R L  EG+  EA   L EM ++ +   ++ YN         G+ E   
Sbjct: 503 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 562

Query: 330 EVLDEMTRSGFNVTA---TSYNPIIARLCKE 357
           E+      SG    A     +  +  R CK+
Sbjct: 563 ELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 593



 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 87/203 (42%), Gaps = 35/203 (17%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+  +  A  + + MV  G +P                                   DAA
Sbjct: 379 KQSSMETAIEYFDDMVDSGLQP-----------------------------------DAA 403

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L+     +  +    +L+++++E G      TYN L+K + +        ++ +++
Sbjct: 404 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 463

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +  ++P++ T++ +++  +  R  +    + D++I +G  P+  SY VL+ GL  EG++
Sbjct: 464 IQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 523

Query: 256 EDAIELFRDLPAKGFSPSVVSYN 278
            +A     ++  KG    ++ YN
Sbjct: 524 REACRYLEEMLDKGMKTPLIDYN 546


>AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23133514-23135313 REVERSE
           LENGTH=599
          Length = 599

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 39/358 (10%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+ + E ++++ F+ G  T N L+  L    KL +  Q+L    K+   PN+ TY+ LL 
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 306

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  + R + EA ++ +D+I  G +P++V++NV+L GL +  +  DAI+LF  + +KG  P
Sbjct: 307 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 366

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +V SY I++R  C +   E A     +M +  L P    Y  LIT      + +  +E+L
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 426

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            EM   G      +YN +I  +  +   +   +  ++MI     P+  T+N I       
Sbjct: 427 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMI------- 479

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY-EMTKCGFTPDSYTY 451
              +++F+                             Y   + ++ EM K G  PD  +Y
Sbjct: 480 --MKSYFV--------------------------ARNYEMGRAVWDEMIKKGICPDDNSY 511

Query: 452 SSLVRGMCREGMLDEALEIF-RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           + L+RG+  EG   EA      +L++    P ID YN     F +  + ++  E+ QR
Sbjct: 512 TVLIRGLISEGKSREACRYLEEMLDKGMKTPLID-YNKFAADFHRGGQPEIFEELAQR 568



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 134/276 (48%), Gaps = 3/276 (1%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   YT L+N  CR  N+  A ++   + +HG +   V +N +++GL    K + +++L
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 355

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              +  KG  PNV +Y+ ++    K+  ++ A++  DD++  G +P+   Y  L+TG   
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT 415

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           + + +   EL +++  KG  P   +YN L++ +  +   E    +  +M + ++ PS+ T
Sbjct: 416 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHT 475

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           +N+++ S  +    E    V DEM + G      SY  +I  L  EGK     + L++M+
Sbjct: 476 FNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEML 535

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNK 407
            +        YN  A    +G   E   IF+ L  +
Sbjct: 536 DKGMKTPLIDYNKFAADFHRGGQPE---IFEELAQR 568



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 46/390 (11%)

Query: 160 VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKER 218
            E  GF   + TYN+++  L    +    + +L+ +  KGL     FT +     A KER
Sbjct: 186 AERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245

Query: 219 ----GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
               G+ E MK     I       + + N LL  L +    ++A  LF  L  + F+P++
Sbjct: 246 KKAVGIFELMKKYKFKIG------VETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 298

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           ++Y +LL   C      EA  +  +M +  L P +V +N+++  L    +   A ++   
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHV 358

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           M   G      SY  +I   CK+  ++  ++  D M+     P+   Y  +         
Sbjct: 359 MKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL--------- 409

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
                     G +                 +K +T   +++L EM + G  PD  TY++L
Sbjct: 410 ------ITGFGTQ-----------------KKLDT--VYELLKEMQEKGHPPDGKTYNAL 444

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           ++ M  + M +    I+  + +N+  P I  +N ++  +   +  ++   ++  M+ KG 
Sbjct: 445 IKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGI 504

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKEL 544
            P++ +YT+L+ GL  E +   A   ++E+
Sbjct: 505 CPDDNSYTVLIRGLISEGKSREACRYLEEM 534



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 3/271 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G KPD+     +L  L +S K   A+++  ++   G  P+   YT ++   C++ +
Sbjct: 324 MIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSS 383

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A++  + + + G Q     Y  L+ G  +  KL+   +LL  + +KG  P+  TY+ 
Sbjct: 384 METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNA 443

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L++    ++  +   ++ + +I    EP++ ++N+++         E    ++ ++  KG
Sbjct: 444 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 503

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P   SY +L+R L  EG+  EA   L EM ++ +   ++ YN         G+ E   
Sbjct: 504 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 563

Query: 330 EVLDEMTRSGFNVTA---TSYNPIIARLCKE 357
           E+      SG    A     +  +  R CK+
Sbjct: 564 ELAQRAKFSGKFAAAEIFARWAQMTRRRCKQ 594



 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 87/203 (42%), Gaps = 35/203 (17%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+  +  A  + + MV  G +P                                   DAA
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQP-----------------------------------DAA 404

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L+     +  +    +L+++++E G      TYN L+K + +        ++ +++
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 464

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            +  ++P++ T++ +++  +  R  +    + D++I +G  P+  SY VL+ GL  EG++
Sbjct: 465 IQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 524

Query: 256 EDAIELFRDLPAKGFSPSVVSYN 278
            +A     ++  KG    ++ YN
Sbjct: 525 REACRYLEEMLDKGMKTPLIDYN 547


>AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr2:15195663-15197156 FORWARD LENGTH=497
          Length = 497

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 152/317 (47%), Gaps = 4/317 (1%)

Query: 216 KERGVDEAMKLLDDIIAR--GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
           + R +D A+ L  D + R   G+PN+  YN ++ G  K G  + A+  ++ +  +   P 
Sbjct: 169 RARKMDYAL-LAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPD 227

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V ++NIL+   C   +++ A  L  EM E+   P+VV++N LI      G+ E+  ++  
Sbjct: 228 VCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAY 287

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
           EM   G   +  +   ++  LC+EG+VD     +  ++ +R  P+E  Y + +  LC + 
Sbjct: 288 EMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGEN 347

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           K   A  + + L  K   P    C  ++  L + G T  A   + +M   G  PDS T++
Sbjct: 348 KAVRAMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFN 407

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
            L+R +C      +A  +  +     Y PD   Y+ L+ GF K  R      +   M++K
Sbjct: 408 LLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLDK 467

Query: 513 GCVPNEITYTILVEGLA 529
             +P+  TY  L++GL+
Sbjct: 468 DMLPDIFTYNRLMDGLS 484



 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 143/290 (49%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KP+V     ++    KS    KA+R  + +      PD   +  L+N  CR      A+ 
Sbjct: 190 KPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALD 249

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L  +++E G +   V++NTL++G  S GK+ + +++   + + G + +  T   L++G  
Sbjct: 250 LFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLC 309

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           +E  VD+A  L+ D++ +   P+   Y  L+  LC E +   A+E+  +L  KG +P  +
Sbjct: 310 REGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFI 369

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +   L+  L   GR E+A+G + +M    + P  VT+N+L+  L     +  A  +    
Sbjct: 370 ACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLA 429

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           +  G+    T+Y+ +++   KEG+       +++M+ +   P+  TYN +
Sbjct: 430 SSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRL 479



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 145/331 (43%), Gaps = 34/331 (10%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   Y  +VN   + G++  A++  +++ +   +    T+N L+ G C   K + +L L
Sbjct: 191 PNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDL 250

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
              + +KG +PNV +++ L+ G      ++E +K+  ++I  G   +  +  +L+ GLC+
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           EGR +DA  L  DL  K   PS   Y  L+  LC E +   A  ++ E+ ++  +P  + 
Sbjct: 311 EGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIA 370

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
              L+  L   GRTE+A   +++M  +G    + ++N ++  LC         +      
Sbjct: 371 CTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLAS 430

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
            + Y P+E TY+ +                                  +S   ++G    
Sbjct: 431 SKGYEPDETTYHVL----------------------------------VSGFTKEGRRKE 456

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
              ++ EM      PD +TY+ L+ G+   G
Sbjct: 457 GEVLVNEMLDKDMLPDIFTYNRLMDGLSCTG 487



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 128/280 (45%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           ++ A    + M  +  KPDV     L+   C+S+K   A+ +   +   G  P+   +  
Sbjct: 209 MDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNT 268

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+      G I   +++  ++ E G +    T   LV GLC  G+++ +  L+  L  K 
Sbjct: 269 LIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKR 328

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           + P+ F Y  L+E    E     AM++++++  +G  P  ++   L+ GL K GRTE A 
Sbjct: 329 VLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKAS 388

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
                +   G  P  V++N+LLR LC      +AN L      +   P   TY++L++  
Sbjct: 389 GFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSGF 448

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           +  GR ++   +++EM          +YN ++  L   GK
Sbjct: 449 TKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGLSCTGK 488



 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 383 NAIAMLCEQGKVQEAFFIFQSL----GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
           +AI   C   K+  A   F ++      K N  +++    V++   + G+   A +    
Sbjct: 162 SAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYN---TVVNGYVKSGDMDKALRFYQR 218

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M K    PD  T++ L+ G CR    D AL++FR ++E    P++ ++N LI GF    +
Sbjct: 219 MGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGK 278

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
            +  +++   M+  GC  +E T  ILV+GL  E  +D A GL+ +L  + VL
Sbjct: 279 IEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVL 330



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 97/201 (48%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G +   A    L+  LC+  +   A  ++  ++   ++P    Y  LV  LC    
Sbjct: 289 MIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENK 348

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              AM+++E++ + G     +   TLV+GL   G+  ++   ++++   G+ P+  T++ 
Sbjct: 349 AVRAMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNL 408

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           LL          +A +L     ++G EP+  +Y+VL++G  KEGR ++   L  ++  K 
Sbjct: 409 LLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLDKD 468

Query: 270 FSPSVVSYNILLRSLCYEGRW 290
             P + +YN L+  L   G++
Sbjct: 469 MLPDIFTYNRLMDGLSCTGKF 489



 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 3/229 (1%)

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IA 386
           AF+ +  +     NV    YN ++    K G +D  ++   +M   R  P+  T+N  I 
Sbjct: 179 AFDTMKRLIDGKPNVGV--YNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILIN 236

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
             C   K   A  +F+ +  K   P       +I      G      +M YEM + G   
Sbjct: 237 GYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRF 296

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
              T   LV G+CREG +D+A  +   L     +P   +Y +L+   C   +   ++E+ 
Sbjct: 297 SEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMM 356

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
           + +  KG  P  I  T LVEGL      + A+G M+++    +L  S  
Sbjct: 357 EELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVT 405



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 4/185 (2%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   +E R++DA   +  ++ K   P       L+  LC  NKA +A+ +ME +   G  
Sbjct: 306 DGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQT 365

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCS--HGKLNQSL 189
           P     T LV  L + G    A   +EK+   G    +VT+N L++ LCS  H      L
Sbjct: 366 PCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRL 425

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           +LL   + KG +P+  TY  L+ G  KE    E   L+++++ +   P++ +YN L+ GL
Sbjct: 426 RLL--ASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGL 483

Query: 250 CKEGR 254
              G+
Sbjct: 484 SCTGK 488


>AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15637177-15639450 REVERSE
           LENGTH=757
          Length = 757

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 210/479 (43%), Gaps = 25/479 (5%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +LN A   L  M  KG   D      L+    K+   +++V++ + +   G+      Y 
Sbjct: 165 KLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYN 224

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L   + RRG    A +   K+   G +    TYN ++ G     +L  +L+  + +  +
Sbjct: 225 SLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTR 284

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ P+  T++ ++ G  + + +DEA KL  ++      P++VSY  ++ G     R +D 
Sbjct: 285 GISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDG 344

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI-LIT 317
           + +F ++ + G  P+  +Y+ LL  LC  G+  EA  +L  M  + ++P   +  + L+ 
Sbjct: 345 LRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLV 404

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD-----QMIC 372
           S S  G    A EVL  M        A  Y  +I   CK    +  ++ LD     ++I 
Sbjct: 405 SQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIIL 464

Query: 373 RRYSPNE---GTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           R     E     YN  I  LC  G+  +A  +F+ L  K+     D   N+I    ++GN
Sbjct: 465 RHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQL-MKRGVQDQDALNNLIRGHAKEGN 523

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              ++++L  M++ G   +S  Y  L++    +G   +A      + E+ ++PD   + +
Sbjct: 524 PDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRS 583

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           +I    +  R   +  +   M++K               +  E+ +D+ A +++ L MR
Sbjct: 584 VIESLFEDGRVQTASRVMMIMIDK--------------NVGIEDNMDLIAKILEALLMR 628



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/484 (20%), Positives = 193/484 (39%), Gaps = 48/484 (9%)

Query: 105 LLYD-LCKSNKARKAVRVMEMIVGSGII-PDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           L+Y+ L  + K   A++       SG+I  D   +  ++  L     + +A  ++  + E
Sbjct: 119 LVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPE 178

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            G       +  L++     G + +S+++  ++   G++  + +Y+ L +   +      
Sbjct: 179 KGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMM 238

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A +  + +++ G EP   +YN++L G     R E A+  F D+  +G SP   ++N ++ 
Sbjct: 239 AKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMIN 298

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
             C   + +EA  L  EM    + PSVV+Y  +I       R +    + +EM  SG   
Sbjct: 299 GFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEP 358

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT--------------------- 381
            AT+Y+ ++  LC  GK+      L  M+ +  +P + +                     
Sbjct: 359 NATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEV 418

Query: 382 YNAIAML----------------CEQGKVQEAFFIFQSLGNKQNCPMHDYC--------K 417
             A+A L                C+      A  +  +L  K+    H            
Sbjct: 419 LKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAYN 478

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
            +I  LC  G T  A  +  ++ K G   D    ++L+RG  +EG  D + EI +I+   
Sbjct: 479 PIIEYLCNNGQTAKAEVLFRQLMKRGVQ-DQDALNNLIRGHAKEGNPDSSYEILKIMSRR 537

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
               + + Y  LI  +        +      MV  G VP+   +  ++E L  +  +  A
Sbjct: 538 GVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESLFEDGRVQTA 597

Query: 538 AGLM 541
           + +M
Sbjct: 598 SRVM 601



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 193/486 (39%), Gaps = 58/486 (11%)

Query: 78  VRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACY 137
           +RL  A    E M  +G  PD A    ++   C+  K  +A ++   + G+ I P    Y
Sbjct: 269 LRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSY 328

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T ++        +   +++ E++   G +    TY+TL+ GLC  GK+ ++  +L  +  
Sbjct: 329 TTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388

Query: 198 KGLKP---NVF---------------------------------TYSFLLEGAYKERGVD 221
           K + P   ++F                                  Y  L+E   K    +
Sbjct: 389 KHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYN 448

Query: 222 EAMKLLDDIIAR----------GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
            A+KLLD +I +            EP+  +YN ++  LC  G+T  A  LFR L  +G  
Sbjct: 449 RAIKLLDTLIEKEIILRHQDTLEMEPS--AYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQ 506

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
               + N L+R    EG  + +  +L  M    +      Y +LI S    G    A   
Sbjct: 507 DQ-DALNNLIRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTA 565

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE- 390
           LD M   G    ++ +  +I  L ++G+V    + +  MI +     E   + IA + E 
Sbjct: 566 LDSMVEDGHVPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGI-EDNMDLIAKILEA 624

Query: 391 ---QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
              +G V+EA      L   QN    D   +++S+L  KG T  A ++L    +   + +
Sbjct: 625 LLMRGHVEEALGRIDLLN--QNGHTAD-LDSLLSVLSEKGKTIAALKLLDFGLERDLSLE 681

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             +Y  ++  +   G    A  +   + E     D  + + LI    +   T  + ++  
Sbjct: 682 FSSYDKVLDALLGAGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQA-DVLS 740

Query: 508 RMVNKG 513
           RM+ KG
Sbjct: 741 RMIKKG 746



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 39/309 (12%)

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGF-SPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           YNVL        + E A++ FR     G       ++  +++ L    +   A  +L +M
Sbjct: 121 YNVLHGA----KKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDM 176

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
            E+ +      + +LI S    G  +++ ++  +M   G   T  SYN +   + + G+ 
Sbjct: 177 PEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRY 236

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
            +  +  ++M+     P   TYN +            FF+   L                
Sbjct: 237 MMAKRYFNKMVSEGVEPTRHTYNLMLW---------GFFLSLRLET-------------- 273

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
                      A +   +M   G +PD  T+++++ G CR   +DEA ++F  ++ N   
Sbjct: 274 -----------ALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIG 322

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
           P + +Y  +I G+    R D  + IF+ M + G  PN  TY+ L+ GL    ++  A  +
Sbjct: 323 PSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNI 382

Query: 541 MKELYMREV 549
           +K +  + +
Sbjct: 383 LKNMMAKHI 391



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 162/388 (41%), Gaps = 64/388 (16%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDL-------------------CKSNKA 115
           +K +   D  + L+ +V + +  D+A AT++L  +                   CK++  
Sbjct: 388 AKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAY 447

Query: 116 RKAVRVMEMIVGSGII--------PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQT 167
            +A+++++ ++   II         + + Y  ++ +LC  G    A  L  ++ + G Q 
Sbjct: 448 NRAIKLLDTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQD 507

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
                N L++G    G  + S ++L  ++++G+      Y  L++    +    +A   L
Sbjct: 508 QDA-LNNLIRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTAL 566

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK--GFSPSVVSYNILLRSLC 285
           D ++  G  P+   +  ++  L ++GR + A  +   +  K  G   ++     +L +L 
Sbjct: 567 DSMVEDGHVPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALL 626

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
             G  EEA   L  +D  + +      + L++ LS  G+T  A ++LD       ++  +
Sbjct: 627 MRGHVEEA---LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFS 683

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC---EQGKV---QEAFF 399
           SY+ ++  L   GK                     T NA ++LC   E+G     + +  
Sbjct: 684 SYDKVLDALLGAGK---------------------TLNAYSVLCKIMEKGSSTDWKSSDE 722

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKG 427
           + +SL  + N    D    V+S + +KG
Sbjct: 723 LIKSLNQEGNTKQAD----VLSRMIKKG 746


>AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Pentatricopeptide repeat (PPR) superfamily
           protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
           12380 proteins in 263 species: Archae - 4; Bacteria -
           27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
           - 0; Other Eukaryotes - 935 (source: NCBI BLink). |
           chr4:575843-577243 REVERSE LENGTH=466
          Length = 466

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G++P+   Y  L+   C   ++  A QL  K+ E        +Y  L++G C  G++N +
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGA 244

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           ++LLD +  KG  P+  +Y+ LL    ++  + EA KLL  +  +G  P+LV YN ++ G
Sbjct: 245 MELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILG 304

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
            C+E R  DA ++  D+ + G SP+ VSY  L+  LC +G ++E    L EM  +  SP 
Sbjct: 305 FCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPH 364

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
               N L+      G+ E+A +V++ + ++G  + + ++  +I  +C E
Sbjct: 365 FSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNE 413



 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 2/268 (0%)

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           K+ E  F       N ++  L SH G L ++ +L       G+ PN  +Y+ L++     
Sbjct: 144 KMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLN 203

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             +  A +L   ++ R   P++ SY +L+ G C++G+   A+EL  D+  KGF P  +SY
Sbjct: 204 DDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSY 263

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             LL SLC + +  EA  LL  M  +  +P +V YN +I       R   A +VLD+M  
Sbjct: 264 TTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS 323

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQE 396
           +G +  + SY  +I  LC +G  D   + L++MI + +SP+    N +    C  GKV+E
Sbjct: 324 NGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEE 383

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLC 424
           A  + + +         D  + VI ++C
Sbjct: 384 ACDVVEVVMKNGETLHSDTWEMVIPLIC 411



 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 134/255 (52%), Gaps = 1/255 (0%)

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
            +  RG +  A +L +    HG    T +YN L++  C +  L+ + QL  ++ ++ + P
Sbjct: 164 LVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVP 223

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +V +Y  L++G  ++  V+ AM+LLDD++ +G  P+ +SY  LL  LC++ +  +A +L 
Sbjct: 224 DVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL 283

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +  KG +P +V YN ++   C E R  +A  +L +M     SP+ V+Y  LI  L   
Sbjct: 284 CRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQ 343

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           G  ++  + L+EM   GF+   +  N ++   C  GKV+     ++ ++    + +  T+
Sbjct: 344 GMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTW 403

Query: 383 N-AIAMLCEQGKVQE 396
              I ++C + + ++
Sbjct: 404 EMVIPLICNEDESEK 418



 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 107/200 (53%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P+      L+   C ++    A ++   ++   ++PD   Y  L+   CR+G +  A
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGA 244

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M+L++ +   GF    ++Y TL+  LC   +L ++ +LL R+  KG  P++  Y+ ++ G
Sbjct: 245 MELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILG 304

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             +E    +A K+LDD+++ G  PN VSY  L+ GLC +G  ++  +   ++ +KGFSP 
Sbjct: 305 FCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPH 364

Query: 274 VVSYNILLRSLCYEGRWEEA 293
               N L++  C  G+ EEA
Sbjct: 365 FSVSNCLVKGFCSFGKVEEA 384



 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 109/217 (50%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +   PDV     L+   C+  +   A+ +++ ++  G +PD   YT L+N LCR+  
Sbjct: 216 MLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQ 275

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A +L+ +++  G     V YNT++ G C   +   + ++LD +   G  PN  +Y  
Sbjct: 276 LREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRT 335

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G   +   DE  K L+++I++G  P+    N L+ G C  G+ E+A ++   +   G
Sbjct: 336 LIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNG 395

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
            +    ++ +++  +C E   E+    L +  +E+++
Sbjct: 396 ETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEIT 432



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 128/282 (45%), Gaps = 36/282 (12%)

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G  + A ELF+     G  P+  SYN+L+++ C       A  L  +M E D+ P V +Y
Sbjct: 169 GYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSY 228

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
            ILI          Q F                         C++G+V+  ++ LD M+ 
Sbjct: 229 KILI----------QGF-------------------------CRKGQVNGAMELLDDMLN 253

Query: 373 RRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
           + + P+  +Y  +   LC + +++EA+ +   +  K   P   +   +I   CR+     
Sbjct: 254 KGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMD 313

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A ++L +M   G +P+S +Y +L+ G+C +GM DE  +    +    + P     N L+ 
Sbjct: 314 ARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVK 373

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           GFC + + + + ++ + ++  G   +  T+ +++  +  E+E
Sbjct: 374 GFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDE 415



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 377 PNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           PN  +YN +    C    +  A+ +F  +  +   P  D  K +I   CRKG    A ++
Sbjct: 188 PNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMEL 247

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           L +M   GF PD  +Y++L+  +CR+  L EA ++   ++     PD+ +YN +ILGFC+
Sbjct: 248 LDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCR 307

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             R   + ++   M++ GC PN ++Y  L+ GL  +   D     ++E+
Sbjct: 308 EDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEM 356



 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 12/253 (4%)

Query: 299 EMDEEDLSPSVVTYNILITSLSLH-GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
           +M E + +P     N ++  L  H G  ++AFE+       G      SYN ++   C  
Sbjct: 144 KMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLN 203

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
             + +  Q   +M+ R   P+  +Y   I   C +G+V  A  +   + NK   P     
Sbjct: 204 DDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSY 263

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +++ LCRK     A+++L  M   G  PD   Y++++ G CRE   D A++  ++L++
Sbjct: 264 TTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCRE---DRAMDARKVLDD 320

Query: 477 ---NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL----A 529
              N   P+  +Y  LI G C     D   +  + M++KG  P+      LV+G      
Sbjct: 321 MLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380

Query: 530 FENELDIAAGLMK 542
            E   D+   +MK
Sbjct: 381 VEEACDVVEVVMK 393


>AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7029701-7031314 FORWARD
           LENGTH=537
          Length = 537

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 193/417 (46%), Gaps = 36/417 (8%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  +++   +      A  L++ ++    +    T+  L++     G  ++++   +R+ 
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
             G  P+   +S ++    ++R   EA    D +  R  EP+++ Y  L+ G C+ G   
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF-EPDVIVYTNLVRGWCRAGEIS 272

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A ++F+++   G  P+V +Y+I++ +LC  G+   A+ + A+M +   +P+ +T+N L+
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                 GRTE+  +V ++M + G      +YN +I   C++  ++  V+ L+ MI ++  
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCE 392

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
            N  T+N I    E                                  +K +   A +M 
Sbjct: 393 VNASTFNTIFRYIE----------------------------------KKRDVNGAHRMY 418

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            +M +    P++ TY+ L+R        D  L++ + +++ +  P+++ Y  L+  FC  
Sbjct: 419 SKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGM 478

Query: 497 QRTDLSIEIFQRMVNKGCV-PNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
              + + ++F+ MV + C+ P+   Y +++  L    +L     L++++  + +++R
Sbjct: 479 GHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVAR 535



 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 175/397 (44%), Gaps = 19/397 (4%)

Query: 65  NWRVGKNDQKSK-------------EVRLNDAFLHL-EYMVGKGQKPDVAQATQLLYDLC 110
           NW   ++D   K             +VR  D   HL + M  +  +  +   T L+    
Sbjct: 138 NWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYV 197

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           ++  A +AV     +   G +PD   ++ +++ L R+     A    + +++  F+   +
Sbjct: 198 RAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVI 256

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            Y  LV+G C  G+++++ ++   +   G++PNV+TYS +++   +   +  A  +  D+
Sbjct: 257 VYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +  G  PN +++N L+    K GRTE  ++++  +   G  P  ++YN L+ + C +   
Sbjct: 317 LDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL 376

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           E A  +L  M ++    +  T+N +   +        A  +  +M  +       +YN +
Sbjct: 377 ENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNIL 436

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQN 409
           +         D+V++   +M  +   PN  TY   + M C  G    A+ +F+ +  ++ 
Sbjct: 437 MRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMV-EEK 495

Query: 410 C--PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           C  P     + V++ L R G      +++ +M + G 
Sbjct: 496 CLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532


>AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403744-17407127
           REVERSE LENGTH=822
          Length = 822

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 205/472 (43%), Gaps = 40/472 (8%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPD      L+    ++ + R A+ +M+ ++ + I P  + Y +L+N     GN   A++
Sbjct: 175 KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALE 234

Query: 156 LVEKVEEHG--------------FQTG---------------------TVTYNTLVKGLC 180
           + +K+ ++G              +++G                     T T+N ++  L 
Sbjct: 235 VCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLS 294

Query: 181 SHGKLNQSLQLLDRLTKKGL--KPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEP 237
             G+ +Q+L L + + +K    +P+V T++ ++   Y  +G ++    + + ++A G +P
Sbjct: 295 KLGQSSQALDLFNSMREKRAECRPDVVTFTSIMH-LYSVKGEIENCRAVFEAMVAEGLKP 353

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+VSYN L+      G +  A+ +  D+   G  P VVSY  LL S     +  +A  + 
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             M +E   P+VVTYN LI +   +G   +A E+  +M + G      S   ++A   + 
Sbjct: 414 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
            K   V   L     R  + N   YN AI       ++++A  ++QS+  K+        
Sbjct: 474 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTF 533

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +IS  CR      A   L EM           YSS++    ++G + EA  IF  ++ 
Sbjct: 534 TILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKM 593

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
               PD+  Y +++  +   ++   + E+F  M   G  P+ I  + L+   
Sbjct: 594 AGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAF 645



 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 193/462 (41%), Gaps = 62/462 (13%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           L+  L RRG I   + + + ++ +  +      YN +++    H  ++Q+  L   + K 
Sbjct: 113 LIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKW 172

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
             KP+  TY  L+    +      AM L+DD++     P+  +YN L+      G   +A
Sbjct: 173 SCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREA 232

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E+ + +   G  P +V++NI+L +     ++ +A      M    + P   T+NI+I  
Sbjct: 233 LEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYC 292

Query: 319 LSLHGRTEQAFEVLDEM--TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
           LS  G++ QA ++ + M   R+       ++  I+     +G+++      + M+     
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLK 352

Query: 377 PNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC------RKGNT 429
           PN  +YNA+       G    A  +   +  KQN  + D    V+S  C      R    
Sbjct: 353 PNIVSYNALMGAYAVHGMSGTALSVLGDI--KQNGIIPD----VVSYTCLLNSYGRSRQP 406

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN---- 485
             A ++   M K    P+  TY++L+      G L EA+EIFR +E++   P++ +    
Sbjct: 407 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTL 466

Query: 486 -------------------------------YNALILGFCKYQRTDLSIEIFQRMVNKGC 514
                                          YN+ I  +      + +I ++Q M  K  
Sbjct: 467 LAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKV 526

Query: 515 VPNEITYTILVEG----------LAFENEL-DIAAGLMKELY 545
             + +T+TIL+ G          +++  E+ D++  L KE+Y
Sbjct: 527 KADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVY 568



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/486 (20%), Positives = 195/486 (40%), Gaps = 42/486 (8%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI--VGSGIIPDAACYTHL 140
           A  + E M G   +PD      ++Y L K  ++ +A+ +   +    +   PD   +T +
Sbjct: 267 ALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSI 326

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++    +G I     + E +   G +   V+YN L+     HG    +L +L  + + G+
Sbjct: 327 MHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGI 386

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            P+V +Y+ LL    + R   +A ++   +     +PN+V+YN L+      G   +A+E
Sbjct: 387 IPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVE 446

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +FR +   G  P+VVS   LL +     +    + +L+      ++ +   YN  I S  
Sbjct: 447 IFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYI 506

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
                E+A  +   M +      + ++  +I+  C+  K    +  L +M        + 
Sbjct: 507 NAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE 566

Query: 381 TYNAIAMLC---EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY 437
            Y+++  LC   +QG+V EA  IF  +      P      +++           A ++  
Sbjct: 567 VYSSV--LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFL 624

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND------------------- 478
           EM   G  PDS   S+L+R   + G       +  ++ E +                   
Sbjct: 625 EMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQ 684

Query: 479 --------------YMP--DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
                         Y+P   I   N ++  F K  + +  +++F +++  G   N  TY 
Sbjct: 685 EWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYA 744

Query: 523 ILVEGL 528
           IL+E L
Sbjct: 745 ILLEHL 750



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/470 (20%), Positives = 184/470 (39%), Gaps = 91/470 (19%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E MV +G KP++     L+        +  A+ V+  I  +GIIPD   YT L+N   R
Sbjct: 343 FEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
               G A ++   + +   +   VTYN L+    S+G L +++++  ++ + G+KPNV +
Sbjct: 403 SRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVS 462

Query: 207 YSFLLEG---------------AYKERGV--------------------DEAMKLLDDII 231
              LL                 A + RG+                    ++A+ L   + 
Sbjct: 463 VCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR 522

Query: 232 ARGGEPNLVSYNVLLTGLC-----------------------------------KEGRTE 256
            +  + + V++ +L++G C                                   K+G+  
Sbjct: 523 KKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVT 582

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A  +F  +   G  P V++Y  +L +     +W +A  L  EM+   + P  +  + L+
Sbjct: 583 EAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALM 642

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA--RLCKEGK--VDLVVQCLDQMIC 372
            + +  G+    F ++D M       T   +  I +     +E K  +DL +Q +D    
Sbjct: 643 RAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDL-IQMMDP--- 698

Query: 373 RRYSPNEG---TYNAIAMLCEQGKVQEAFFIF-QSLGNKQNCPMHDYCKNVISMLCRKGN 428
             Y P+     T   + +  + GKV+    +F + + +     +  Y   ++  L   GN
Sbjct: 699 --YLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI-LLEHLLAVGN 755

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVR------GMCREGMLDEALEIFR 472
                ++L  M+  G  P +  Y  ++       G+  E ++ + LE  R
Sbjct: 756 WRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQKLESLR 805


>AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403861-17406648
           REVERSE LENGTH=683
          Length = 683

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 205/472 (43%), Gaps = 40/472 (8%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPD      L+    ++ + R A+ +M+ ++ + I P  + Y +L+N     GN   A++
Sbjct: 43  KPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALE 102

Query: 156 LVEKVEEHG--------------FQTG---------------------TVTYNTLVKGLC 180
           + +K+ ++G              +++G                     T T+N ++  L 
Sbjct: 103 VCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLS 162

Query: 181 SHGKLNQSLQLLDRLTKKGL--KPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEP 237
             G+ +Q+L L + + +K    +P+V T++ ++   Y  +G ++    + + ++A G +P
Sbjct: 163 KLGQSSQALDLFNSMREKRAECRPDVVTFTSIMH-LYSVKGEIENCRAVFEAMVAEGLKP 221

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N+VSYN L+      G +  A+ +  D+   G  P VVSY  LL S     +  +A  + 
Sbjct: 222 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 281

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
             M +E   P+VVTYN LI +   +G   +A E+  +M + G      S   ++A   + 
Sbjct: 282 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 341

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
            K   V   L     R  + N   YN AI       ++++A  ++QS+  K+        
Sbjct: 342 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTF 401

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +IS  CR      A   L EM           YSS++    ++G + EA  IF  ++ 
Sbjct: 402 TILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKM 461

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
               PD+  Y +++  +   ++   + E+F  M   G  P+ I  + L+   
Sbjct: 462 AGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAF 513



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 179/429 (41%), Gaps = 61/429 (14%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YN +++    H  ++Q+  L   + K   KP+  TY  L+    +      AM L+DD++
Sbjct: 14  YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 73

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
                P+  +YN L+      G   +A+E+ + +   G  P +V++NI+L +     ++ 
Sbjct: 74  RAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYS 133

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM--TRSGFNVTATSYNP 349
           +A      M    + P   T+NI+I  LS  G++ QA ++ + M   R+       ++  
Sbjct: 134 KALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTS 193

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQ 408
           I+     +G+++      + M+     PN  +YNA+       G    A  +   +  KQ
Sbjct: 194 IMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI--KQ 251

Query: 409 NCPMHDYCKNVISMLC------RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
           N  + D    V+S  C      R      A ++   M K    P+  TY++L+      G
Sbjct: 252 NGIIPD----VVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG 307

Query: 463 MLDEALEIFRILEENDYMPDIDN-----------------------------------YN 487
            L EA+EIFR +E++   P++ +                                   YN
Sbjct: 308 FLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYN 367

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG----------LAFENEL-DI 536
           + I  +      + +I ++Q M  K    + +T+TIL+ G          +++  E+ D+
Sbjct: 368 SAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDL 427

Query: 537 AAGLMKELY 545
           +  L KE+Y
Sbjct: 428 SIPLTKEVY 436



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/488 (20%), Positives = 196/488 (40%), Gaps = 42/488 (8%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI--VGSGIIPDAACYT 138
           + A  + E M G   +PD      ++Y L K  ++ +A+ +   +    +   PD   +T
Sbjct: 133 SKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFT 192

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++    +G I     + E +   G +   V+YN L+     HG    +L +L  + + 
Sbjct: 193 SIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN 252

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ P+V +Y+ LL    + R   +A ++   +     +PN+V+YN L+      G   +A
Sbjct: 253 GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEA 312

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +E+FR +   G  P+VVS   LL +     +    + +L+      ++ +   YN  I S
Sbjct: 313 VEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGS 372

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                  E+A  +   M +      + ++  +I+  C+  K    +  L +M        
Sbjct: 373 YINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLT 432

Query: 379 EGTYNAIAMLC---EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           +  Y+++  LC   +QG+V EA  IF  +      P      +++           A ++
Sbjct: 433 KEVYSSV--LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACEL 490

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND----------------- 478
             EM   G  PDS   S+L+R   + G       +  ++ E +                 
Sbjct: 491 FLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNT 550

Query: 479 ----------------YMP--DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
                           Y+P   I   N ++  F K  + +  +++F +++  G   N  T
Sbjct: 551 LQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKT 610

Query: 521 YTILVEGL 528
           Y IL+E L
Sbjct: 611 YAILLEHL 618



 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 175/447 (39%), Gaps = 85/447 (19%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
            E MV +G KP++     L+        +  A+ V+  I  +GIIPD   YT L+N   R
Sbjct: 211 FEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 270

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
               G A ++   + +   +   VTYN L+    S+G L +++++  ++ + G+KPNV +
Sbjct: 271 SRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVS 330

Query: 207 YSFLLEG---------------AYKERGV--------------------DEAMKLLDDII 231
              LL                 A + RG+                    ++A+ L   + 
Sbjct: 331 VCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR 390

Query: 232 ARGGEPNLVSYNVLLTGLC-----------------------------------KEGRTE 256
            +  + + V++ +L++G C                                   K+G+  
Sbjct: 391 KKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVT 450

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A  +F  +   G  P V++Y  +L +     +W +A  L  EM+   + P  +  + L+
Sbjct: 451 EAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALM 510

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA--RLCKEGK--VDLVVQCLDQMIC 372
            + +  G+    F ++D M       T   +  I +     +E K  +DL +Q +D    
Sbjct: 511 RAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDL-IQMMDP--- 566

Query: 373 RRYSPNEG---TYNAIAMLCEQGKVQEAFFIF-QSLGNKQNCPMHDYCKNVISMLCRKGN 428
             Y P+     T   + +  + GKV+    +F + + +     +  Y   ++  L   GN
Sbjct: 567 --YLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI-LLEHLLAVGN 623

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLV 455
                ++L  M+  G  P +  Y  ++
Sbjct: 624 WRKYIEVLEWMSGAGIQPSNQMYRDII 650



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 10/212 (4%)

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           K  +  +A  +   +  +G  PD   YT +++        G A +L  ++E +G +  ++
Sbjct: 445 KQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSI 504

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
             + L++     G+ +    L+D + +K +    FT +   E       + E  + +D I
Sbjct: 505 ACSALMRAFNKGGQPSNVFVLMDLMREKEIP---FTGAVFFEIFSACNTLQEWKRAIDLI 561

Query: 231 IARGGEPNLVSYNVLLTG-----LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLC 285
             +  +P L S ++ LT        K G+ E  ++LF  + A G   ++ +Y ILL  L 
Sbjct: 562 --QMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLL 619

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
             G W +   +L  M    + PS   Y  +I+
Sbjct: 620 AVGNWRKYIEVLEWMSGAGIQPSNQMYRDIIS 651


>AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26339876-26341789 REVERSE
           LENGTH=637
          Length = 637

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 181/416 (43%), Gaps = 41/416 (9%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG---LKPNV 204
           GN+GY    V   ++  +      Y ++VK L    +      L++ + K+    ++P +
Sbjct: 127 GNLGYRF-FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPEL 185

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
           F    L++       V +A+++LD++   G EP+   +  LL  LCK G  +DA +LF D
Sbjct: 186 FV--VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFED 243

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +  + F  ++  +  LL   C  G+  EA  +L +M+E    P +V Y  L++  +  G+
Sbjct: 244 MRMR-FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGK 302

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
              A+++L +M R GF   A  Y  +I  LCK  +++  ++   +M       +  TY A
Sbjct: 303 MADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTA 362

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           +                                  +S  C+ G     + +L +M K G 
Sbjct: 363 L----------------------------------VSGFCKWGKIDKCYIVLDDMIKKGL 388

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
            P   TY  ++    ++   +E LE+   + + +Y PDI  YN +I   CK      ++ 
Sbjct: 389 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 448

Query: 505 IFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSM 560
           ++  M   G  P   T+ I++ GLA +  L  A+   KE+  R + S S    L +
Sbjct: 449 LWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKL 504



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 193/413 (46%), Gaps = 9/413 (2%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+     ++  +KA+ V++ +   G  PD   +  L++ LC+ G++  A +L E +    
Sbjct: 189 LVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR- 247

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
           F      + +L+ G C  GK+ ++  +L ++ + G +P++  Y+ LL G      + +A 
Sbjct: 248 FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAY 307

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
            LL D+  RG EPN   Y VL+  LCK  R E+A+++F ++        VV+Y  L+   
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C  G+ ++   +L +M ++ L PS +TY  ++ +       E+  E++++M +  ++   
Sbjct: 368 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 427

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQS 403
             YN +I   CK G+V   V+  ++M     SP   T+   I  L  QG + EA   F+ 
Sbjct: 428 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKE 487

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS-----YTYSSLVRGM 458
           +  +    +  Y    + +L          +M  ++  C  +  +      +++  +  +
Sbjct: 488 MVTRGLFSVSQY--GTLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHAL 545

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
             +G   EA      + E D+MP  D +  L+ G  K    + + EI +++ N
Sbjct: 546 FSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNREFAGEITEKVRN 598



 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 17/326 (5%)

Query: 63  LPNW-RVGKN-DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVR 120
           L  W RVGK  + K   V++N+A          G +PD+   T LL     + K   A  
Sbjct: 259 LYGWCRVGKMMEAKYVLVQMNEA----------GFEPDIVDYTNLLSGYANAGKMADAYD 308

Query: 121 VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC 180
           ++  +   G  P+A CYT L+  LC+   +  AM++  ++E +  +   VTY  LV G C
Sbjct: 309 LLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFC 368

Query: 181 SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
             GK+++   +LD + KKGL P+  TY  ++    K+   +E ++L++ +      P++ 
Sbjct: 369 KWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIG 428

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
            YNV++   CK G  ++A+ L+ ++   G SP V ++ I++  L  +G   EA+    EM
Sbjct: 429 IYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEM 488

Query: 301 DEEDLSPSVVTY---NILITSLSLHGRTEQAFEVLDEMTRSGF-NVTATSYNPIIARLCK 356
               L  SV  Y    +L+ ++    + E A +V   +T  G   +   S+   I  L  
Sbjct: 489 VTRGLF-SVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFS 547

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTY 382
           +G          +MI   + P   T+
Sbjct: 548 KGYEKEACSYCIEMIEMDFMPQPDTF 573



 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 1/242 (0%)

Query: 103 TQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           T LLY  C+  K  +A  V+  +  +G  PD   YT+L++     G +  A  L+  +  
Sbjct: 256 TSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR 315

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
            GF+     Y  L++ LC   ++ +++++   + +   + +V TY+ L+ G  K   +D+
Sbjct: 316 RGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDK 375

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
              +LDD+I +G  P+ ++Y  ++    K+   E+ +EL   +    + P +  YN+++R
Sbjct: 376 CYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIR 435

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM-TRSGFN 341
             C  G  +EA  L  EM+E  LSP V T+ I+I  L+  G   +A +   EM TR  F+
Sbjct: 436 LACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFS 495

Query: 342 VT 343
           V+
Sbjct: 496 VS 497



 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 152/316 (48%), Gaps = 25/316 (7%)

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           LE A  E GV+    L++ ++ R G+   + Y   +    K+ R   +IE+++ +     
Sbjct: 100 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWA-AKQPRYCHSIEVYKSM----- 153

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT---YNILITSLSLHGRTEQ 327
                   IL +   +   W    GL+ EM +E+  P ++    + +L+   +     ++
Sbjct: 154 ------VKILSKMRQFGAVW----GLIEEMRKEN--PQLIEPELFVVLVQRFASADMVKK 201

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
           A EVLDEM + GF      +  ++  LCK G V    +  + M  R +  N   + ++  
Sbjct: 202 AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR-FPVNLRYFTSLLY 260

Query: 388 -LCEQGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
             C  GK+ EA ++   +      P + DY  N++S     G    A+ +L +M + GF 
Sbjct: 261 GWCRVGKMMEAKYVLVQMNEAGFEPDIVDYT-NLLSGYANAGKMADAYDLLRDMRRRGFE 319

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
           P++  Y+ L++ +C+   ++EA+++F  +E  +   D+  Y AL+ GFCK+ + D    +
Sbjct: 320 PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIV 379

Query: 506 FQRMVNKGCVPNEITY 521
              M+ KG +P+E+TY
Sbjct: 380 LDDMIKKGLMPSELTY 395


>AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26805651-26807183 REVERSE
           LENGTH=510
          Length = 510

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 4/289 (1%)

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           K+ +++    ++ + G K     ++ +L+   K R V +A K+ D +  +  EP++ SY 
Sbjct: 177 KVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYT 236

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +LL G  +E       E+ R++  +GF P VV+Y I++ + C   ++EEA     EM++ 
Sbjct: 237 ILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQR 296

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           +  PS   +  LI  L    +   A E  +    SGF + A +YN ++   C   +++  
Sbjct: 297 NCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDA 356

Query: 364 VQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            + +D+M  +   PN  TY+ I   L    + +EA+ ++Q++  +     ++    ++ M
Sbjct: 357 YKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEI---MVRM 413

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
            C K     A ++  EM   G  P  + +SSL+  +C E  LDEA E F
Sbjct: 414 FCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYF 462



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 146/289 (50%), Gaps = 4/289 (1%)

Query: 110 CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGT 169
            ++ K ++A+     +   G   +++ +  +++ L +  N+G A ++ +K+++  F+   
Sbjct: 173 ARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDI 232

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
            +Y  L++G      L +  ++   +  +G +P+V  Y  ++    K +  +EA++  ++
Sbjct: 233 KSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNE 292

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +  R  +P+   +  L+ GL  E +  DA+E F    + GF     +YN L+ + C+  R
Sbjct: 293 MEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQR 352

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            E+A   + EM  + + P+  TY+I++  L    R+++A+EV   M+      T ++Y  
Sbjct: 353 MEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS---CEPTVSTYEI 409

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           ++   C + ++D+ ++  D+M  +   P    +++ I  LC + K+ EA
Sbjct: 410 MVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEA 458



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 128/278 (46%), Gaps = 3/278 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K + +   ++L  L KS     A +V + +      PD   YT L+    +  N+   
Sbjct: 192 GFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRV 251

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++  ++++ GF+   V Y  ++   C   K  ++++  + + ++  KP+   +  L+ G
Sbjct: 252 DEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLING 311

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              E+ +++A++  +   + G      +YN L+   C   R EDA +   ++  KG  P+
Sbjct: 312 LGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPN 371

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
             +Y+I+L  L    R +EA  +   M  E   P+V TY I++       R + A ++ D
Sbjct: 372 ARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PTVSTYEIMVRMFCNKERLDMAIKIWD 428

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           EM   G       ++ +I  LC E K+D   +  ++M+
Sbjct: 429 EMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEML 466



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  +G +PDV     ++   CK+ K  +A+R    +      P    +  L+N L     
Sbjct: 258 MKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKK 317

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A++  E+ +  GF     TYN LV   C   ++  + + +D +  KG+ PN  TY  
Sbjct: 318 LNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDI 377

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +L    + +   EA ++   +     EP + +Y +++   C + R + AI+++ ++  KG
Sbjct: 378 ILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKG 434

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
             P +  ++ L+ +LC+E + +EA     EM +  + P    ++ L  +L   GR ++  
Sbjct: 435 VLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVT 494

Query: 330 EVLDEMTR 337
           +++ +M R
Sbjct: 495 DLVVKMDR 502



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 139/357 (38%), Gaps = 44/357 (12%)

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS---YNVLLTGLCKEG 253
           +KG K     Y+ L+E   K +       L+DD+ A+     L+S   + ++     +  
Sbjct: 121 QKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAK----KLLSKETFALISRRYARAR 176

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           + ++AI  F  +   GF      +N +L +L       +A  +  +M ++   P + +Y 
Sbjct: 177 KVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYT 236

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           IL+          +  EV  EM   GF     +Y  II   CK  K +  ++  ++M  R
Sbjct: 237 ILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQR 296

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
              P+                                  H +C ++I+ L  +     A 
Sbjct: 297 NCKPSP---------------------------------HIFC-SLINGLGSEKKLNDAL 322

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           +        GF  ++ TY++LV   C    +++A +    +      P+   Y+ ++   
Sbjct: 323 EFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHL 382

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
            + QR+  + E++Q M    C P   TY I+V     +  LD+A  +  E+  + VL
Sbjct: 383 IRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVL 436


>AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29071983-29073536 REVERSE
           LENGTH=517
          Length = 517

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 167/366 (45%), Gaps = 36/366 (9%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T+  +++      K+++++   + + K  L PN+  ++ LL    K + V +A ++ +++
Sbjct: 170 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
             R   P+  +Y++LL G  KE     A E+FR++   G  P +V+Y+I++  LC  GR 
Sbjct: 230 RDRFT-PDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV 288

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           +EA G++  MD     P+   Y++L+ +     R E+A +   EM RSG       +N +
Sbjct: 289 DEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSL 348

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNC 410
           I   CK                                    +++  + + + + +K   
Sbjct: 349 IGAFCK----------------------------------ANRMKNVYRVLKEMKSKGVT 374

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           P    C  ++  L  +G    AF +  +M K    PD+ TY+ +++  C +  ++ A ++
Sbjct: 375 PNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMVIKMFCEKKEMETADKV 433

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
           ++ + +    P +  ++ LI G C+ + T  +  + + M+  G  P+ +T+  L + L  
Sbjct: 434 WKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIK 493

Query: 531 ENELDI 536
           E   D+
Sbjct: 494 EEREDV 499



 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 154/316 (48%), Gaps = 8/316 (2%)

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           YA  ++EK   +      V +N L+  LC    + ++ ++ + +  +   P+  TYS LL
Sbjct: 189 YAFNVMEK---YDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILL 244

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           EG  KE  + +A ++  ++I  G  P++V+Y++++  LCK GR ++A+ + R +      
Sbjct: 245 EGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P+   Y++L+ +   E R EEA     EM+   +   V  +N LI +     R +  + V
Sbjct: 305 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRV 364

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCE 390
           L EM   G    + S N I+  L + G+ D       +MI +   P+  TY   I M CE
Sbjct: 365 LKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI-KVCEPDADTYTMVIKMFCE 423

Query: 391 QGKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           + +++ A  +++ +  K   P MH +   +I+ LC +  T  A  +L EM + G  P   
Sbjct: 424 KKEMETADKVWKYMRKKGVFPSMHTF-SVLINGLCEERTTQKACVLLEEMIEMGIRPSGV 482

Query: 450 TYSSLVRGMCREGMLD 465
           T+  L + + +E   D
Sbjct: 483 TFGRLRQLLIKEERED 498



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 143/310 (46%), Gaps = 2/310 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++++A      M      P++     LL  LCKS   RKA  V E +      PD+  Y+
Sbjct: 183 KVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM-RDRFTPDSKTYS 241

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+    +  N+  A ++  ++ + G     VTY+ +V  LC  G+++++L ++  +   
Sbjct: 242 ILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPS 301

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
             KP  F YS L+     E  ++EA+    ++   G + ++  +N L+   CK  R ++ 
Sbjct: 302 ICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNV 361

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
             + +++ +KG +P+  S NI+LR L   G  +EA  +  +M +    P   TY ++I  
Sbjct: 362 YRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKM 420

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
                  E A +V   M + G   +  +++ +I  LC+E         L++MI     P+
Sbjct: 421 FCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPS 480

Query: 379 EGTYNAIAML 388
             T+  +  L
Sbjct: 481 GVTFGRLRQL 490



 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 142/297 (47%), Gaps = 14/297 (4%)

Query: 69  GKNDQKSKEV--RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIV 126
            KN +K++EV   + D F            PD    + LL    K     KA  V   ++
Sbjct: 216 SKNVRKAQEVFENMRDRF-----------TPDSKTYSILLEGWGKEPNLPKAREVFREMI 264

Query: 127 GSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN 186
            +G  PD   Y+ +V+ LC+ G +  A+ +V  ++    +  T  Y+ LV    +  +L 
Sbjct: 265 DAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLE 324

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
           +++     + + G+K +V  ++ L+    K   +    ++L ++ ++G  PN  S N++L
Sbjct: 325 EAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
             L + G  ++A ++FR +  K   P   +Y ++++  C +   E A+ +   M ++ + 
Sbjct: 385 RHLIERGEKDEAFDVFRKM-IKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVF 443

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           PS+ T+++LI  L     T++A  +L+EM   G   +  ++  +   L KE + D++
Sbjct: 444 PSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVL 500



 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +V ++ I++R      + +EA      M++ DL P++V +N L+++L       +A EV 
Sbjct: 167 NVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVF 226

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQ 391
           + M R  F   + +Y+ ++    KE  +    +   +MI     P+  TY+  + +LC+ 
Sbjct: 227 ENM-RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKA 285

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G+V EA  I +S+      P       ++     +     A     EM + G   D   +
Sbjct: 286 GRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVF 345

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           +SL+   C+   +     + + ++     P+  + N ++    +    D + ++F++M+ 
Sbjct: 346 NSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI- 404

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
           K C P+  TYT++++    + E++ A  + K  YMR+
Sbjct: 405 KVCEPDADTYTMVIKMFCEKKEMETADKVWK--YMRK 439



 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 174/395 (44%), Gaps = 26/395 (6%)

Query: 170 VTYNTLVKGLCSHG-----KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
           V + + ++  CS       + N ++++++R ++   K   F  + L   + + R V +  
Sbjct: 15  VNFFSFMRWECSSSATVWVRFNMTIRIINRQSRFCCKS--FLSARLYSSSEQVRDVADVA 72

Query: 225 KLLDDIIARGGEPNLVSYNVL-LTGL-CKEGRTEDAIELFRDL------------PAKGF 270
           K +  ++     P LV  + L  +GL   +   ED +  FR+               + +
Sbjct: 73  KNISKVLM--SSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHY 130

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
             SV +Y++++ S     +++    L+  M ++ +  +V T+ I++   +   + ++A  
Sbjct: 131 EHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKML-NVETFCIVMRKYARAQKVDEAIY 189

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LC 389
             + M +        ++N +++ LCK   V    +  + M   R++P+  TY+ +     
Sbjct: 190 AFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR-DRFTPDSKTYSILLEGWG 248

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           ++  + +A  +F+ + +    P       ++ +LC+ G    A  ++  M      P ++
Sbjct: 249 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 308

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
            YS LV     E  L+EA++ F  +E +    D+  +N+LI  FCK  R      + + M
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEM 368

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +KG  PN  +  I++  L    E D A  + +++
Sbjct: 369 KSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKM 403


>AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675811 FORWARD
           LENGTH=463
          Length = 463

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 178/365 (48%), Gaps = 6/365 (1%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKK--GLKPNVFTYSFLLEGAYK--ERGVDEAMKLL 227
           +N++++   S   +N +++L   + K     +P   T+  LL  A +  +  +    ++L
Sbjct: 88  HNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVL 147

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           + ++  G EP+ V+ ++ +  LC+ GR ++A +L ++L  K   P   +YN LL+ LC  
Sbjct: 148 NLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKC 207

Query: 288 GRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
                    + EM D+ D+ P +V++ ILI ++       +A  ++ ++  +GF      
Sbjct: 208 KDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFL 267

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLG 405
           YN I+   C   K    V    +M      P++ TYN +   L + G+V+EA    +++ 
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327

Query: 406 NKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
           +    P      ++++ +CRKG +  A  +L EM   G  P+  TY++L+ G+C+  ++D
Sbjct: 328 DAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMD 387

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           + +E++ +++ +    + + Y  L+    K  +   + E+F   V+   + +   Y+ L 
Sbjct: 388 KGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTLE 447

Query: 526 EGLAF 530
             L +
Sbjct: 448 TTLKW 452



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 16/347 (4%)

Query: 64  PNWRVGKNDQ--------KSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKA 115
           PN+R G++          ++ +  +++    L  MV  G +PD       +  LC++ + 
Sbjct: 116 PNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRV 175

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV-EEHGFQTGTVTYNT 174
            +A  +M+ +      PD   Y  L+  LC+  ++    + V+++ ++   +   V++  
Sbjct: 176 DEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTI 235

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L+  +C+   L +++ L+ +L   G KP+ F Y+ +++G        EA+ +   +   G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG 295

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
            EP+ ++YN L+ GL K GR E+A    + +   G+ P   +Y  L+  +C +G    A 
Sbjct: 296 VEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGAL 355

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            LL EM+    +P+  TYN L+  L      ++  E+ + M  SG  + +  Y  ++  L
Sbjct: 356 SLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSL 415

Query: 355 CKEGKVDLVVQCLDQMICRR-------YSPNEGTYNAIAMLCEQGKV 394
            K GKV    +  D  +  +       YS  E T   +    EQG V
Sbjct: 416 VKSGKVAEAYEVFDYAVDSKSLSDASAYSTLETTLKWLKKAKEQGLV 462



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 151/328 (46%), Gaps = 13/328 (3%)

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEP-NLVSYNVLLTGLCKEGRTEDAIELFRDL--PA 267
           L   +K   + +A  L + I A    P +L  +N +L          D ++LF+ +    
Sbjct: 56  LRNPFKSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQ 115

Query: 268 KGFSPSVVSYNILLRSLCY--EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             F P   ++ ILL   C   +      + +L  M    L P  VT +I + SL   GR 
Sbjct: 116 PNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRV 175

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGTYNA 384
           ++A +++ E+T         +YN ++  LCK   + +V + +D+M       P+  ++  
Sbjct: 176 DEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTI 235

Query: 385 -IAMLCEQGKVQEAFFIFQSLGN---KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
            I  +C    ++EA ++   LGN   K +C +++    ++   C       A  +  +M 
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYN---TIMKGFCTLSKGSEAVGVYKKMK 292

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           + G  PD  TY++L+ G+ + G ++EA    + + +  Y PD   Y +L+ G C+   + 
Sbjct: 293 EEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESL 352

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGL 528
            ++ + + M  +GC PN+ TY  L+ GL
Sbjct: 353 GALSLLEEMEARGCAPNDCTYNTLLHGL 380


>AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:6328519-6329970 REVERSE
           LENGTH=483
          Length = 483

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 156/341 (45%), Gaps = 15/341 (4%)

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           +L GA  +    +A K   D      EP L+   V    L +EG  E+AIE++  L   G
Sbjct: 118 ILFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYV--KCLSEEGLVEEAIEVYNVLKDMG 175

Query: 270 FSPSVVSYNILLRSLCYEGR-----WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
            S SVV+ N +L   C + R     WE    L  EM E +     +    LI +L   G 
Sbjct: 176 ISSSVVTCNSVLLG-CLKARKLDRFWE----LHKEMVESEFDSERI--RCLIRALCDGGD 228

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
             + +E+L +  + G +     Y  +I+  C+ G    + + L  MI   + P+   Y  
Sbjct: 229 VSEGYELLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQK 288

Query: 385 IAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
           I   LC   K  EA+ IF++L +K   P       +I   C KG    A ++ +EM K G
Sbjct: 289 IIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKG 348

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
             P+ + Y+ ++ G  + G +      +  +  N Y   + + N +I GFC + ++D + 
Sbjct: 349 MRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAF 408

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           EIF+ M   G  PN ITY  L++G   EN+++    L KEL
Sbjct: 409 EIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKEL 449



 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 117/242 (48%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           +++ +  L+  + +G  P      +L+   C+         V+  ++     P    Y  
Sbjct: 229 VSEGYELLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQK 288

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++  LC       A  + + +++ G+    V Y T+++G C  G L  + +L   + KKG
Sbjct: 289 IIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKG 348

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           ++PN F Y+ ++ G +K   +       ++++  G    ++S N ++ G C  G++++A 
Sbjct: 349 MRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAF 408

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           E+F+++   G +P+ ++YN L++  C E + E+   L  E+    L PS + Y  L+ +L
Sbjct: 409 EIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNL 468

Query: 320 SL 321
            +
Sbjct: 469 KM 470



 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 126/275 (45%), Gaps = 5/275 (1%)

Query: 114 KARKAVRVMEM---IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           KARK  R  E+   +V S    D+     L+  LC  G++    +L+++  + G   G  
Sbjct: 192 KARKLDRFWELHKEMVESEF--DSERIRCLIRALCDGGDVSEGYELLKQGLKQGLDPGQY 249

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            Y  L+ G C  G      ++L  +      P+++ Y  +++G    +   EA  +  ++
Sbjct: 250 VYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKKQLEAYCIFKNL 309

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
             +G  P+ V Y  ++ G C++G    A +L+ ++  KG  P+  +YN+++      G  
Sbjct: 310 KDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEI 369

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
                   EM       ++++ N +I     HG++++AFE+   M+ +G    A +YN +
Sbjct: 370 SLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNAL 429

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           I   CKE KV+  ++   ++      P+   Y A+
Sbjct: 430 IKGFCKENKVEKGLKLYKELKALGLKPSGMAYAAL 464



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 113/250 (45%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+  LC      +   +++  +  G+ P    Y  L++  C  GN     +++  +    
Sbjct: 219 LIRALCDGGDVSEGYELLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWN 278

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
                  Y  ++KGLC + K  ++  +   L  KG  P+   Y+ ++ G  ++  +  A 
Sbjct: 279 HFPSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSAR 338

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
           KL  ++I +G  PN  +YNV++ G  K G        + ++   G+  +++S N +++  
Sbjct: 339 KLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGF 398

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C  G+ +EA  +   M E  ++P+ +TYN LI       + E+  ++  E+   G   + 
Sbjct: 399 CSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSG 458

Query: 345 TSYNPIIARL 354
            +Y  ++  L
Sbjct: 459 MAYAALVRNL 468


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K D    T ++ +L ++ +     ++++ +V  G  P+   Y  L++   R   +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M +  +++E G +   VTY TL+      G L+ ++ +  R+   GL P+ FTYS ++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   +  A KL  +++ +G  PNLV+YN+++    K    ++A++L+RD+   GF P 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V+Y+I++  L + G  EEA  +  EM +++  P    Y +L+      G  E+A++   
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQ 598

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M  +G      + N +++   +  K+    + L  M+     P+  TY  +   C  G+
Sbjct: 599 AMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658



 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ MV  G +P+     +L++   ++N   +A+ V   +  +G  PD   Y  L++   +
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  AM + ++++  G    T TY+ ++  L   G L  + +L   +  +G  PN+ T
Sbjct: 447 AGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVT 506

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   K R    A+KL  D+   G EP+ V+Y++++  L   G  E+A  +F ++ 
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            K + P    Y +L+      G  E+A      M    L P+V T N L+++     +  
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           +A+E+L  M   G   +  +Y  ++   C +G+  L +    Q++     P
Sbjct: 627 EAYELLQNMLALGLRPSLQTYT-LLLSCCTDGRSKLDMGFCGQLMASTGHP 676



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           GF     +Y  ++ +L    ++   N LL EM  +   P+ VTYN LI S        +A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-M 387
             V ++M  +G      +Y  +I    K G +D+ +    +M     SP+  TY+ I   
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP-AFQMLYEMTKCGFTP 446
           L + G +  A  +F  + + Q C  +    N++  L  K   Y  A ++  +M   GF P
Sbjct: 479 LGKAGHLPAAHKLFCEMVD-QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D  TYS ++  +   G L+EA  +F  +++ +++PD   Y  L+  + K    + + + +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           Q M++ G  PN  T   L+      N++  A  L++ +
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 5/267 (1%)

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           E+ RD    G  P+ V+YN L+ S        EA  +  +M E    P  VTY  LI   
Sbjct: 389 EMVRD----GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
           +  G  + A ++   M   G +    +Y+ II  L K G +    +   +M+ +  +PN 
Sbjct: 445 AKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504

Query: 380 GTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TYN +  L  + +  Q A  +++ + N    P       V+ +L   G    A  +  E
Sbjct: 505 VTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE 564

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M +  + PD   Y  LV    + G +++A + ++ +      P++   N+L+  F +  +
Sbjct: 565 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 624

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILV 525
              + E+ Q M+  G  P+  TYT+L+
Sbjct: 625 IAEAYELLQNMLALGLRPSLQTYTLLL 651



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN+A      M   G KPD      L+    K+     A+ + + +   G+ PD   Y+ 
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSV 474

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++N L + G++  A +L  ++ + G     VTYN ++           +L+L   +   G
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            +P+  TYS ++E       ++EA  +  ++  +   P+   Y +L+    K G  E A 
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           + ++ +   G  P+V + N LL +     +  EA  LL  M    L PS+ TY +L++
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 3/221 (1%)

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
           + GF     +Y  ++  L +  +   + + LD+M+     PN  TYN  I        + 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 396 EAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
           EA  +F  +      P    YC  +I +  + G    A  M   M   G +PD++TYS +
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYC-TLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           +  + + G L  A ++F  + +    P++  YN ++    K +    ++++++ M N G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
            P+++TY+I++E L     L+ A  +  E+  +  +    V
Sbjct: 536 EPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K D    T ++ +L ++ +     ++++ +V  G  P+   Y  L++   R   +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M +  +++E G +   VTY TL+      G L+ ++ +  R+   GL P+ FTYS ++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   +  A KL  +++ +G  PNLV+YN+++    K    ++A++L+RD+   GF P 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V+Y+I++  L + G  EEA  +  EM +++  P    Y +L+      G  E+A++   
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQ 598

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M  +G      + N +++   +  K+    + L  M+     P+  TY  +   C  G+
Sbjct: 599 AMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ MV  G +P+     +L++   ++N   +A+ V   +  +G  PD   Y  L++   +
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  AM + ++++  G    T TY+ ++  L   G L  + +L   +  +G  PN+ T
Sbjct: 447 AGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVT 506

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   K R    A+KL  D+   G EP+ V+Y++++  L   G  E+A  +F ++ 
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            K + P    Y +L+      G  E+A      M    L P+V T N L+++     +  
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           +A+E+L  M   G   +  +Y  ++   C +G+  L +    Q++     P
Sbjct: 627 EAYELLQNMLALGLRPSLQTYT-LLLSCCTDGRSKLDMGFCGQLMASTGHP 676



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           GF     +Y  ++ +L    ++   N LL EM  +   P+ VTYN LI S        +A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-M 387
             V ++M  +G      +Y  +I    K G +D+ +    +M     SP+  TY+ I   
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP-AFQMLYEMTKCGFTP 446
           L + G +  A  +F  + + Q C  +    N++  L  K   Y  A ++  +M   GF P
Sbjct: 479 LGKAGHLPAAHKLFCEMVD-QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D  TYS ++  +   G L+EA  +F  +++ +++PD   Y  L+  + K    + + + +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           Q M++ G  PN  T   L+      N++  A  L++ +
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 5/267 (1%)

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           E+ RD    G  P+ V+YN L+ S        EA  +  +M E    P  VTY  LI   
Sbjct: 389 EMVRD----GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
           +  G  + A ++   M   G +    +Y+ II  L K G +    +   +M+ +  +PN 
Sbjct: 445 AKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504

Query: 380 GTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TYN +  L  + +  Q A  +++ + N    P       V+ +L   G    A  +  E
Sbjct: 505 VTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE 564

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M +  + PD   Y  LV    + G +++A + ++ +      P++   N+L+  F +  +
Sbjct: 565 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 624

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILV 525
              + E+ Q M+  G  P+  TYT+L+
Sbjct: 625 IAEAYELLQNMLALGLRPSLQTYTLLL 651



 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN+A      M   G KPD      L+    K+     A+ + + +   G+ PD   Y+ 
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSV 474

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++N L + G++  A +L  ++ + G     VTYN ++           +L+L   +   G
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            +P+  TYS ++E       ++EA  +  ++  +   P+   Y +L+    K G  E A 
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           + ++ +   G  P+V + N LL +     +  EA  LL  M    L PS+ TY +L++
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 3/221 (1%)

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
           + GF     +Y  ++  L +  +   + + LD+M+     PN  TYN  I        + 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 396 EAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
           EA  +F  +      P    YC  +I +  + G    A  M   M   G +PD++TYS +
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYC-TLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           +  + + G L  A ++F  + +    P++  YN ++    K +    ++++++ M N G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
            P+++TY+I++E L     L+ A  +  E+  +  +    V
Sbjct: 536 EPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K D    T ++ +L ++ +     ++++ +V  G  P+   Y  L++   R   +  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M +  +++E G +   VTY TL+      G L+ ++ +  R+   GL P+ FTYS ++  
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   +  A KL  +++ +G  PNLV+YN+++    K    ++A++L+RD+   GF P 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V+Y+I++  L + G  EEA  +  EM +++  P    Y +L+      G  E+A++   
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQ 598

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M  +G      + N +++   +  K+    + L  M+     P+  TY  +   C  G+
Sbjct: 599 AMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGR 658



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ MV  G +P+     +L++   ++N   +A+ V   +  +G  PD   Y  L++   +
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  AM + ++++  G    T TY+ ++  L   G L  + +L   +  +G  PN+ T
Sbjct: 447 AGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVT 506

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   K R    A+KL  D+   G EP+ V+Y++++  L   G  E+A  +F ++ 
Sbjct: 507 YNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ 566

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            K + P    Y +L+      G  E+A      M    L P+V T N L+++     +  
Sbjct: 567 QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIA 626

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           +A+E+L  M   G   +  +Y  ++   C +G+  L +    Q++     P
Sbjct: 627 EAYELLQNMLALGLRPSLQTYT-LLLSCCTDGRSKLDMGFCGQLMASTGHP 676



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           GF     +Y  ++ +L    ++   N LL EM  +   P+ VTYN LI S        +A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-M 387
             V ++M  +G      +Y  +I    K G +D+ +    +M     SP+  TY+ I   
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP-AFQMLYEMTKCGFTP 446
           L + G +  A  +F  + + Q C  +    N++  L  K   Y  A ++  +M   GF P
Sbjct: 479 LGKAGHLPAAHKLFCEMVD-QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           D  TYS ++  +   G L+EA  +F  +++ +++PD   Y  L+  + K    + + + +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           Q M++ G  PN  T   L+      N++  A  L++ +
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 5/267 (1%)

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           E+ RD    G  P+ V+YN L+ S        EA  +  +M E    P  VTY  LI   
Sbjct: 389 EMVRD----GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
           +  G  + A ++   M   G +    +Y+ II  L K G +    +   +M+ +  +PN 
Sbjct: 445 AKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNL 504

Query: 380 GTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            TYN +  L  + +  Q A  +++ + N    P       V+ +L   G    A  +  E
Sbjct: 505 VTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE 564

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M +  + PD   Y  LV    + G +++A + ++ +      P++   N+L+  F +  +
Sbjct: 565 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 624

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILV 525
              + E+ Q M+  G  P+  TYT+L+
Sbjct: 625 IAEAYELLQNMLALGLRPSLQTYTLLL 651



 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           LN+A      M   G KPD      L+    K+     A+ + + +   G+ PD   Y+ 
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSV 474

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           ++N L + G++  A +L  ++ + G     VTYN ++           +L+L   +   G
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            +P+  TYS ++E       ++EA  +  ++  +   P+   Y +L+    K G  E A 
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           + ++ +   G  P+V + N LL +     +  EA  LL  M    L PS+ TY +L++
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 652



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 3/221 (1%)

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
           + GF     +Y  ++  L +  +   + + LD+M+     PN  TYN  I        + 
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416

Query: 396 EAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
           EA  +F  +      P    YC  +I +  + G    A  M   M   G +PD++TYS +
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYC-TLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           +  + + G L  A ++F  + +    P++  YN ++    K +    ++++++ M N G 
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGF 535

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
            P+++TY+I++E L     L+ A  +  E+  +  +    V
Sbjct: 536 EPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576


>AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19608857-19610428 REVERSE
           LENGTH=523
          Length = 523

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 147/315 (46%), Gaps = 2/315 (0%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A +   ++ E G +      + L+  LC    +N + +   +    G+ P+  TYS L+ 
Sbjct: 157 ACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVR 216

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  + R    A K+ D+++ R    +L++YN LL  LCK G  +   ++F+++   G  P
Sbjct: 217 GWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKP 276

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
              S+ I + + C  G    A  +L  M   DL P+V T+N +I +L  + + + A+ +L
Sbjct: 277 DAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLL 336

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQ 391
           DEM + G N    +YN I+A  C   +V+   + L +M   +  P+  TYN +  +L   
Sbjct: 337 DEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRI 396

Query: 392 GKVQEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           G+   A  I++ +  ++  P +  Y   +  ++ +KG    A +    M   G  P S T
Sbjct: 397 GRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTT 456

Query: 451 YSSLVRGMCREGMLD 465
              L   +   G +D
Sbjct: 457 VEMLRNRLVGWGQMD 471



 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 1/293 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV  G KP V    QLL+ LC       A        G GI+P A  Y+ LV    R  +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A ++ +++ E       + YN L+  LC  G ++   ++   +   GLKP+ ++++ 
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
            +        V  A K+LD +      PN+ ++N ++  LCK  + +DA  L  ++  KG
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
            +P   +YN ++   C       A  LL+ MD     P   TYN+++  L   GR ++A 
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRAT 403

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLC-KEGKVDLVVQCLDQMICRRYSPNEGT 381
           E+ + M+   F  T  +Y  +I  L  K+GK++   +  + MI     P   T
Sbjct: 404 EIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTT 456



 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 170/392 (43%), Gaps = 40/392 (10%)

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L+E  E + F+  +  +  + +        +++ +  +R+ + G+KP V     LL    
Sbjct: 125 LIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLC 184

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
            ++ V+ A +        G  P+  +Y++L+ G  +      A ++F ++  +     ++
Sbjct: 185 DKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLL 244

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +YN LL +LC  G  +    +  EM    L P   ++ I I +    G    A++VLD M
Sbjct: 245 AYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM 304

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKV 394
            R        ++N II  LCK  KVD     LD+MI +  +P+  TYN+I A  C+  +V
Sbjct: 305 KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEV 364

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
             A                        +L R            + TKC   PD +TY+ +
Sbjct: 365 NRA----------------------TKLLSR-----------MDRTKC--LPDRHTYNMV 389

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ-RTDLSIEIFQRMVNKG 513
           ++ + R G  D A EI+  + E  + P +  Y  +I G  + + + + +   F+ M+++G
Sbjct: 390 LKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEG 449

Query: 514 CVPNEITYTILVEGLAFENELDIA---AGLMK 542
             P   T  +L   L    ++D+    AG M+
Sbjct: 450 IPPYSTTVEMLRNRLVGWGQMDVVDVLAGKME 481



 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 131/316 (41%), Gaps = 6/316 (1%)

Query: 219 GVDEAMKLLDDIIARGGEPNLVS-----YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
           G  +   LL D +    E N        + ++     +     +A   F  +   G  P 
Sbjct: 113 GSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPC 172

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V   + LL SLC +     A     +     + PS  TY+IL+   +       A +V D
Sbjct: 173 VDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFD 232

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQG 392
           EM      V   +YN ++  LCK G VD   +   +M      P+  ++   I   C+ G
Sbjct: 233 EMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAG 292

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
            V  A+ +   +      P      ++I  LC+      A+ +L EM + G  PD++TY+
Sbjct: 293 DVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYN 352

Query: 453 SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
           S++   C    ++ A ++   ++    +PD   YN ++    +  R D + EI++ M  +
Sbjct: 353 SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSER 412

Query: 513 GCVPNEITYTILVEGL 528
              P   TYT+++ GL
Sbjct: 413 KFYPTVATYTVMIHGL 428



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G KPD       ++  C +     A +V++ +    ++P+   + H++  LC+   +  A
Sbjct: 273 GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             L++++ + G    T TYN+++   C H ++N++ +LL R+ +    P+  TY+ +L+ 
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC-KEGRTEDAIELFRDLPAKGFSP 272
             +    D A ++ + +  R   P + +Y V++ GL  K+G+ E+A   F  +  +G  P
Sbjct: 393 LIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPP 452

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMD 301
              +  +L   L   G+ +  + L  +M+
Sbjct: 453 YSTTVEMLRNRLVGWGQMDVVDVLAGKME 481



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED-LSPSVVTYNILITSLSL 321
           R +P   F+ S+ SY+IL+  L    ++      L E  E +    S   + I+  + S 
Sbjct: 93  RRIP--DFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSR 150

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
                +A    + M   G        + ++  LC +  V+   +   +       P+  T
Sbjct: 151 ANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKT 210

Query: 382 YNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEM 439
           Y+ +     + +    A  +F  +  + NC +     N ++  LC+ G+    ++M  EM
Sbjct: 211 YSILVRGWARIRDASGARKVFDEMLER-NCVVDLLAYNALLDALCKSGDVDGGYKMFQEM 269

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRT 499
              G  PD+Y+++  +   C  G +  A ++   ++  D +P++  +N +I   CK ++ 
Sbjct: 270 GNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKV 329

Query: 500 DLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           D +  +   M+ KG  P+  TY  ++       E++ A  L+  +
Sbjct: 330 DDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRM 374


>AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23587298-23588220 FORWARD
           LENGTH=257
          Length = 257

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 3/250 (1%)

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
           + ++V    ++  LCK+G   +A  LF ++  KG  P+V++YN ++ S C+ GRW +A+ 
Sbjct: 7   KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQ 66

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
           LL  M E+ ++P +VT++ LI +     +  +A E+  EM R     T  +YN +I   C
Sbjct: 67  LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFC 126

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           K+ +VD   + LD M  +  SP+  T++  I   C+  +V     IF  +  +       
Sbjct: 127 KQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 186

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
               +I   C+ G+   A  +L EM  CG  PD  T+  ++ G+C +  L +A  I   L
Sbjct: 187 TYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDL 246

Query: 475 E--ENDYMPD 482
           +  E+ ++ D
Sbjct: 247 QKSEDHHLED 256



 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 118/233 (50%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           S I  D    T +V+ LC+ GN   A  L  ++ E G     +TYN ++   C  G+ + 
Sbjct: 4   SHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSD 63

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
           + QLL  + +K + P++ T+S L+    KER V EA ++  +++     P  ++YN ++ 
Sbjct: 64  ADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMID 123

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           G CK+ R +DA  +   + +KG SP VV+++ L+   C   R +    +  EM    +  
Sbjct: 124 GFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVA 183

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           + VTY  LI      G  + A ++L+EM   G      +++ ++A LC + ++
Sbjct: 184 NTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 236



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 124/243 (51%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           K DV  +T ++  LCK      A  +   +   GI P+   Y  +++  C  G    A Q
Sbjct: 7   KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQ 66

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L+  + E       VT++ L+       K++++ ++   + +  + P   TY+ +++G  
Sbjct: 67  LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFC 126

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           K+  VD+A ++LD + ++G  P++V+++ L+ G CK  R ++ +E+F ++  +G   + V
Sbjct: 127 KQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 186

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +Y  L+   C  G  + A  LL EM    ++P  +T++ ++  L       +AF +L+++
Sbjct: 187 TYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDL 246

Query: 336 TRS 338
            +S
Sbjct: 247 QKS 249



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 1/251 (0%)

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
            +   V    +V  LC  G    +  L   + +KG+ PNV TY+ +++         +A 
Sbjct: 6   IKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDAD 65

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
           +LL  +I +   P++V+++ L+    KE +  +A E+++++      P+ ++YN ++   
Sbjct: 66  QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGF 125

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C + R ++A  +L  M  +  SP VVT++ LI       R +   E+  EM R G     
Sbjct: 126 CKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 185

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQS 403
            +Y  +I   C+ G +D     L++MI    +P+  T++  +A LC + ++++AF I + 
Sbjct: 186 VTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILED 245

Query: 404 LGNKQNCPMHD 414
           L   ++  + D
Sbjct: 246 LQKSEDHHLED 256



 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 111/215 (51%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG  P+V     ++   C S +   A +++  ++   I PD   ++ L+N   +   
Sbjct: 36  MHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERK 95

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++ +++        T+TYN+++ G C   +++ + ++LD +  KG  P+V T+S 
Sbjct: 96  VSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFST 155

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ G  K + VD  M++  ++  RG   N V+Y  L+ G C+ G  + A +L  ++ + G
Sbjct: 156 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCG 215

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
            +P  ++++ +L  LC +    +A  +L ++ + +
Sbjct: 216 VAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSE 250



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 35/275 (12%)

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V+S  I+ R LC +G    A  L  EM E+ + P+V+TYN +I S    GR   A ++L 
Sbjct: 11  VISTAIVDR-LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLR 69

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M     N    +++ +I    KE KV    +   +M+     P   TYN++        
Sbjct: 70  HMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSM-------- 121

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
                                     I   C++     A +ML  M   G +PD  T+S+
Sbjct: 122 --------------------------IDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFST 155

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+ G C+   +D  +EIF  +     + +   Y  LI GFC+    D + ++   M++ G
Sbjct: 156 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCG 215

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMRE 548
             P+ IT+  ++ GL  + EL  A  ++++L   E
Sbjct: 216 VAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSE 250



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 95/187 (50%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R +DA   L +M+ K   PD+   + L+    K  K  +A  + + ++   I P    Y 
Sbjct: 60  RWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYN 119

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            +++  C++  +  A ++++ +   G     VT++TL+ G C   +++  +++   + ++
Sbjct: 120 SMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 179

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+  N  TY+ L+ G  +   +D A  LL+++I+ G  P+ ++++ +L GLC +     A
Sbjct: 180 GIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKA 239

Query: 259 IELFRDL 265
             +  DL
Sbjct: 240 FAILEDL 246



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%)

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           LC+ G    A  +F  +  K   P       +I   C  G    A Q+L  M +    PD
Sbjct: 20  LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPD 79

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             T+S+L+    +E  + EA EI++ +      P    YN++I GFCK  R D +  +  
Sbjct: 80  IVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLD 139

Query: 508 RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRS 553
            M +KGC P+ +T++ L+ G      +D    +  E++ R +++ +
Sbjct: 140 SMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 185



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 64/122 (52%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K+ R++DA   L+ M  KG  PDV   + L+   CK+ +    + +   +   GI+ +  
Sbjct: 127 KQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 186

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            YT L++  C+ G++  A  L+ ++   G     +T++ ++ GLCS  +L ++  +L+ L
Sbjct: 187 TYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDL 246

Query: 196 TK 197
            K
Sbjct: 247 QK 248


>AT1G05600.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1672161-1673675 FORWARD
           LENGTH=504
          Length = 504

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 177/377 (46%), Gaps = 13/377 (3%)

Query: 61  FTLPNWRVGKN---DQKSKEVRLNDA-FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKAR 116
           F   NW +  +    +  KE  L  A  +  +Y  G      +     L+  LC+ N++ 
Sbjct: 110 FNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSD 169

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV----EKVEEHGFQTGTVTY 172
            A +V + +   G  PD   Y  L+   C  G +  A  L+     ++ + G     V Y
Sbjct: 170 LASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVY 229

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE--RGVDEAMKLLDDI 230
             L+  LC  G+++ ++++L ++ +KGLK     Y  +  G ++    G++   +LL + 
Sbjct: 230 RILLDALCDAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTET 289

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           + RG  P L SY+ + T L +EG+  +  E+   + +KGF P+   Y   +++LC  G+ 
Sbjct: 290 LIRGAIPCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALCRAGKL 349

Query: 291 EEANGLL-AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT-ATSYN 348
           +EA  ++  EM +    P+V  YN+LI  L   G++ +A   L +M++    V    +Y 
Sbjct: 350 KEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCVANEETYQ 409

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNK 407
            ++  LC++G+     Q +++M+ + + P   TY+  I  LC+  +  EA    + + ++
Sbjct: 410 TLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVMWLEEMVSQ 469

Query: 408 QNCPMHDYCKNVISMLC 424
              P     K +   +C
Sbjct: 470 DMVPESSVWKALAESVC 486



 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 188/444 (42%), Gaps = 47/444 (10%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           + + Y  +++ L +   +     ++E+++E   +     + ++++     G+L  ++ L 
Sbjct: 45  NGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLF 104

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN--LVSYNVLLTGLC 250
             L +        ++  LL+   KE  ++ A  +       G E N  + + N+L+  LC
Sbjct: 105 KSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKY-CYGWEVNSRITALNLLMKVLC 163

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM----DEEDLS 306
           +  R++ A ++F+++  +G  P   SY IL++  C EG+ EEA  LL  M     ++   
Sbjct: 164 QVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSG 223

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI--------------IA 352
             +V Y IL+ +L   G  + A E+L ++ R G       Y+ I              + 
Sbjct: 224 EDIVVYRILLDALCDAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVK 283

Query: 353 RLCKEGKVDLVVQCLDQ-----------------------MICRRYSPNEGTYNA-IAML 388
           RL  E  +   + CLD                        M  + + P    Y A +  L
Sbjct: 284 RLLTETLIRGAIPCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKAL 343

Query: 389 CEQGKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTK-CGFTP 446
           C  GK++EA  +      + +C P       +I  LC  G +  A   L +M+K      
Sbjct: 344 CRAGKLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCVA 403

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           +  TY +LV G+CR+G   EA ++   +    + P ++ Y+ +I G C   R   ++   
Sbjct: 404 NEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVMWL 463

Query: 507 QRMVNKGCVPNEITYTILVEGLAF 530
           + MV++  VP    +  L E + F
Sbjct: 464 EEMVSQDMVPESSVWKALAESVCF 487



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 375 YSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYPA 432
           Y  N   Y   I +L +  +V E  ++ + +  + +C   D    +VI    R G    A
Sbjct: 42  YGHNGSVYATMIDILGKSNRVLEMKYVIERM-KEDSCECKDSVFASVIRTFSRAGRLEDA 100

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI----LEENDYMPDIDNYNA 488
             +   + +      S ++ +L++ M +E  L+ A  IFR      E N     I   N 
Sbjct: 101 ISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNS---RITALNL 157

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           L+   C+  R+DL+ ++FQ M  +GC P+  +Y IL++G   E +L+ A  L+  ++ R
Sbjct: 158 LMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWR 216


>AT1G05600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1672161-1673675 FORWARD
           LENGTH=504
          Length = 504

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 177/377 (46%), Gaps = 13/377 (3%)

Query: 61  FTLPNWRVGKN---DQKSKEVRLNDA-FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKAR 116
           F   NW +  +    +  KE  L  A  +  +Y  G      +     L+  LC+ N++ 
Sbjct: 110 FNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSD 169

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV----EKVEEHGFQTGTVTY 172
            A +V + +   G  PD   Y  L+   C  G +  A  L+     ++ + G     V Y
Sbjct: 170 LASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVY 229

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE--RGVDEAMKLLDDI 230
             L+  LC  G+++ ++++L ++ +KGLK     Y  +  G ++    G++   +LL + 
Sbjct: 230 RILLDALCDAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTET 289

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           + RG  P L SY+ + T L +EG+  +  E+   + +KGF P+   Y   +++LC  G+ 
Sbjct: 290 LIRGAIPCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALCRAGKL 349

Query: 291 EEANGLL-AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT-ATSYN 348
           +EA  ++  EM +    P+V  YN+LI  L   G++ +A   L +M++    V    +Y 
Sbjct: 350 KEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCVANEETYQ 409

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNK 407
            ++  LC++G+     Q +++M+ + + P   TY+  I  LC+  +  EA    + + ++
Sbjct: 410 TLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVMWLEEMVSQ 469

Query: 408 QNCPMHDYCKNVISMLC 424
              P     K +   +C
Sbjct: 470 DMVPESSVWKALAESVC 486



 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 188/444 (42%), Gaps = 47/444 (10%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           + + Y  +++ L +   +     ++E+++E   +     + ++++     G+L  ++ L 
Sbjct: 45  NGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLF 104

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN--LVSYNVLLTGLC 250
             L +        ++  LL+   KE  ++ A  +       G E N  + + N+L+  LC
Sbjct: 105 KSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKY-CYGWEVNSRITALNLLMKVLC 163

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM----DEEDLS 306
           +  R++ A ++F+++  +G  P   SY IL++  C EG+ EEA  LL  M     ++   
Sbjct: 164 QVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSG 223

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI--------------IA 352
             +V Y IL+ +L   G  + A E+L ++ R G       Y+ I              + 
Sbjct: 224 EDIVVYRILLDALCDAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVK 283

Query: 353 RLCKEGKVDLVVQCLDQ-----------------------MICRRYSPNEGTYNA-IAML 388
           RL  E  +   + CLD                        M  + + P    Y A +  L
Sbjct: 284 RLLTETLIRGAIPCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKAL 343

Query: 389 CEQGKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTK-CGFTP 446
           C  GK++EA  +      + +C P       +I  LC  G +  A   L +M+K      
Sbjct: 344 CRAGKLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCVA 403

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           +  TY +LV G+CR+G   EA ++   +    + P ++ Y+ +I G C   R   ++   
Sbjct: 404 NEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVMWL 463

Query: 507 QRMVNKGCVPNEITYTILVEGLAF 530
           + MV++  VP    +  L E + F
Sbjct: 464 EEMVSQDMVPESSVWKALAESVCF 487



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 375 YSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYPA 432
           Y  N   Y   I +L +  +V E  ++ + +  + +C   D    +VI    R G    A
Sbjct: 42  YGHNGSVYATMIDILGKSNRVLEMKYVIERM-KEDSCECKDSVFASVIRTFSRAGRLEDA 100

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI----LEENDYMPDIDNYNA 488
             +   + +      S ++ +L++ M +E  L+ A  IFR      E N     I   N 
Sbjct: 101 ISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNS---RITALNL 157

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           L+   C+  R+DL+ ++FQ M  +GC P+  +Y IL++G   E +L+ A  L+  ++ R
Sbjct: 158 LMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWR 216


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 147/300 (49%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K D    T ++ +L ++ +  +  ++++ +V  G  P+   Y  L++   R   +  A
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M +  +++E G +   VTY TL+      G L+ ++ +  R+ + GL P+ FTYS ++  
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   +  A +L  +++ +G  PNLV++N+++    K    E A++L+RD+   GF P 
Sbjct: 474 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPD 533

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V+Y+I++  L + G  EEA G+ AEM  ++  P    Y +L+      G  ++A++   
Sbjct: 534 KVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQ 593

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M ++G      + N +++   +  ++      L  M+     P+  TY  +   C   +
Sbjct: 594 AMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDAR 653



 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 139/291 (47%), Gaps = 1/291 (0%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ MV  G KP+     +L++   ++N  ++A+ V   +  +G  PD   Y  L++   +
Sbjct: 382 LDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAK 441

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +  AM + ++++E G    T TY+ ++  L   G L  + +L   +  +G  PN+ T
Sbjct: 442 AGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVT 501

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           ++ ++    K R  + A+KL  D+   G +P+ V+Y++++  L   G  E+A  +F ++ 
Sbjct: 502 FNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQ 561

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            K + P    Y +L+      G  ++A      M +  L P+V T N L+++     R  
Sbjct: 562 RKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMS 621

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           +A+ +L  M   G + +  +Y  ++   C + + +  +    Q++     P
Sbjct: 622 EAYNLLQSMLALGLHPSLQTYT-LLLSCCTDARSNFDMGFCGQLMAVSGHP 671



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 161/386 (41%), Gaps = 40/386 (10%)

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           V+ + RR   G+A +  E +   GF+      N ++K + ++         L R  + G 
Sbjct: 300 VSSILRRFKWGHAAE--EALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKR--QPGF 355

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
           K +  TY+ ++    + +   E  KLLD+++  G +PN V+YN L+    +    ++A+ 
Sbjct: 356 KHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMN 415

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +F  +   G  P  V+Y  L+      G  + A  +   M E  LSP   TY+++I  L 
Sbjct: 416 VFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLG 475

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
             G    A  +  EM   G      ++N +IA   K    +  ++    M    + P++ 
Sbjct: 476 KAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKV 535

Query: 381 TYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
           TY+ +  +L   G ++EA  +F                                    EM
Sbjct: 536 TYSIVMEVLGHCGFLEEAEGVFA-----------------------------------EM 560

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRT 499
            +  + PD   Y  LV    + G +D+A + ++ + +    P++   N+L+  F +  R 
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620

Query: 500 DLSIEIFQRMVNKGCVPNEITYTILV 525
             +  + Q M+  G  P+  TYT+L+
Sbjct: 621 SEAYNLLQSMLALGLHPSLQTYTLLL 646



 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 5/279 (1%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           GF     +Y  ++ +L    ++ E N LL EM  +   P+ VTYN LI S       ++A
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-M 387
             V ++M  +G      +Y  +I    K G +D+ +    +M     SP+  TY+ I   
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473

Query: 388 LCEQGKVQEAFFIF-QSLGNKQNCPMHDYCKNVISMLCRKGNTY-PAFQMLYEMTKCGFT 445
           L + G +  A  +F + +G  Q C  +    N++  L  K   Y  A ++  +M   GF 
Sbjct: 474 LGKAGHLPAAHRLFCEMVG--QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQ 531

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
           PD  TYS ++  +   G L+EA  +F  ++  +++PD   Y  L+  + K    D + + 
Sbjct: 532 PDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQW 591

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +Q M+  G  PN  T   L+      + +  A  L++ +
Sbjct: 592 YQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630


>AT3G04130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1084136-1085662 FORWARD
           LENGTH=508
          Length = 508

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 161/320 (50%), Gaps = 10/320 (3%)

Query: 170 VTYNTLVK---GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKL 226
           VT NT+ K        G+  +++ + DRL + GL+ N  + + LL+   KE+ V++A  +
Sbjct: 153 VTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVV 212

Query: 227 LDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
           L  + +    PN  ++N+ + G CK  R E+A+   +++   GF P V+SY  ++R  C 
Sbjct: 213 LLQLKSHIT-PNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 271

Query: 287 EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
           +  + +   +L+EM+     P+ +TY  +++SL+     E+A  V   M RSG    +  
Sbjct: 272 QFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLF 331

Query: 347 YNPIIARLCKEGKVDLVVQCLD-QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           YN +I  L + G+++   +    +M     S N  TYN+ IAM C   +  +A  + + +
Sbjct: 332 YNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEM 391

Query: 405 GNKQNC--PMHDYCKNVISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLVRGMCRE 461
            +   C   +H Y + ++    ++G+     ++L EM TK   + D  TY+ L++ +CR 
Sbjct: 392 ESSNLCNPDVHTY-QPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRA 450

Query: 462 GMLDEALEIFRILEENDYMP 481
            M + A  +F  +   D  P
Sbjct: 451 NMCEWAYCLFEEMISQDITP 470



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 148/291 (50%), Gaps = 4/291 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G + +      LL  LCK  +  +A RV+ + + S I P+A  +   ++  C+   +  A
Sbjct: 185 GLEKNTESMNLLLDTLCKEKRVEQA-RVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEA 243

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           +  +++++ HGF+   ++Y T+++  C   +  +  ++L  +   G  PN  TY+ ++  
Sbjct: 244 LWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSS 303

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR-DLPAKGFSP 272
              ++  +EA+++   +   G +P+ + YN L+  L + GR E+A  +FR ++P  G S 
Sbjct: 304 LNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSI 363

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL-SPSVVTYNILITSLSLHGRTEQAFEV 331
           +  +YN ++   C+    ++A  LL EM+  +L +P V TY  L+ S    G   +  ++
Sbjct: 364 NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKL 423

Query: 332 LDEM-TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
           L EM T+   ++  ++Y  +I RLC+    +      ++MI +  +P   T
Sbjct: 424 LKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 474



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 157/335 (46%), Gaps = 11/335 (3%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G    A+ + +++ E G +  T + N L+  LC   ++ Q+  +L +L K  + PN  T+
Sbjct: 169 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHTF 227

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           +  + G  K   V+EA+  + ++   G  P ++SY  ++   C++       E+  ++ A
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
            G  P+ ++Y  ++ SL  +  +EEA  +   M      P  + YN LI +L+  GR E+
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347

Query: 328 AFEVLD-EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM----ICRRYSPNEGTY 382
           A  V   EM   G ++  ++YN +IA  C   + D  ++ L +M    +C   +P+  TY
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLC---NPDVHTY 404

Query: 383 NAIAMLC-EQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMT 440
             +   C ++G V E   + + +  K +  + +     +I  LCR      A+ +  EM 
Sbjct: 405 QPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMI 464

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
               TP   T   L+  + ++ M + A  I  I++
Sbjct: 465 SQDITPRHRTCLLLLEEVKKKNMHESAERIEHIMK 499



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 4/279 (1%)

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           KG   S  +Y++ +  L    +W+     +  M  + L  ++ T   ++   +  G  E+
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLV-TLNTVAKIMRRFAGAGEWEE 173

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IA 386
           A  + D +   G      S N ++  LCKE +V+     L Q+     +PN  T+N  I 
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSH-ITPNAHTFNIFIH 232

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
             C+  +V+EA +  Q +      P       +I   C++      ++ML EM   G  P
Sbjct: 233 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPP 292

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           +S TY++++  +  +   +EAL +   ++ +   PD   YN LI    +  R + +  +F
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352

Query: 507 Q-RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +  M   G   N  TY  ++      +E D A  L+KE+
Sbjct: 353 RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEM 391



 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 40/236 (16%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCK------------------------ 111
           K  R+ +A   ++ M G G +P V   T ++   C+                        
Sbjct: 236 KANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSI 295

Query: 112 -------SNKARK----AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV 160
                  S  A+K    A+RV   +  SG  PD+  Y  L++ L R G +  A + V +V
Sbjct: 296 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEA-ERVFRV 354

Query: 161 E--EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKE 217
           E  E G    T TYN+++   C H + +++++LL  +    L  P+V TY  LL   +K 
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414

Query: 218 RGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
             V E  KLL +++ +     +  +Y  L+  LC+    E A  LF ++ ++  +P
Sbjct: 415 GDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITP 470


>AT3G04130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1084136-1085662 FORWARD
           LENGTH=508
          Length = 508

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 161/320 (50%), Gaps = 10/320 (3%)

Query: 170 VTYNTLVK---GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKL 226
           VT NT+ K        G+  +++ + DRL + GL+ N  + + LL+   KE+ V++A  +
Sbjct: 153 VTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVV 212

Query: 227 LDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
           L  + +    PN  ++N+ + G CK  R E+A+   +++   GF P V+SY  ++R  C 
Sbjct: 213 LLQLKSHIT-PNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 271

Query: 287 EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
           +  + +   +L+EM+     P+ +TY  +++SL+     E+A  V   M RSG    +  
Sbjct: 272 QFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLF 331

Query: 347 YNPIIARLCKEGKVDLVVQCLD-QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL 404
           YN +I  L + G+++   +    +M     S N  TYN+ IAM C   +  +A  + + +
Sbjct: 332 YNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEM 391

Query: 405 GNKQNC--PMHDYCKNVISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLVRGMCRE 461
            +   C   +H Y + ++    ++G+     ++L EM TK   + D  TY+ L++ +CR 
Sbjct: 392 ESSNLCNPDVHTY-QPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRA 450

Query: 462 GMLDEALEIFRILEENDYMP 481
            M + A  +F  +   D  P
Sbjct: 451 NMCEWAYCLFEEMISQDITP 470



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 148/291 (50%), Gaps = 4/291 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G + +      LL  LCK  +  +A RV+ + + S I P+A  +   ++  C+   +  A
Sbjct: 185 GLEKNTESMNLLLDTLCKEKRVEQA-RVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEA 243

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           +  +++++ HGF+   ++Y T+++  C   +  +  ++L  +   G  PN  TY+ ++  
Sbjct: 244 LWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSS 303

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR-DLPAKGFSP 272
              ++  +EA+++   +   G +P+ + YN L+  L + GR E+A  +FR ++P  G S 
Sbjct: 304 LNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSI 363

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL-SPSVVTYNILITSLSLHGRTEQAFEV 331
           +  +YN ++   C+    ++A  LL EM+  +L +P V TY  L+ S    G   +  ++
Sbjct: 364 NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKL 423

Query: 332 LDEM-TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
           L EM T+   ++  ++Y  +I RLC+    +      ++MI +  +P   T
Sbjct: 424 LKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRT 474



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 157/335 (46%), Gaps = 11/335 (3%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G    A+ + +++ E G +  T + N L+  LC   ++ Q+  +L +L K  + PN  T+
Sbjct: 169 GEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHTF 227

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           +  + G  K   V+EA+  + ++   G  P ++SY  ++   C++       E+  ++ A
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
            G  P+ ++Y  ++ SL  +  +EEA  +   M      P  + YN LI +L+  GR E+
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347

Query: 328 AFEVLD-EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM----ICRRYSPNEGTY 382
           A  V   EM   G ++  ++YN +IA  C   + D  ++ L +M    +C   +P+  TY
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLC---NPDVHTY 404

Query: 383 NAIAMLC-EQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMT 440
             +   C ++G V E   + + +  K +  + +     +I  LCR      A+ +  EM 
Sbjct: 405 QPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMI 464

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
               TP   T   L+  + ++ M + A  I  I++
Sbjct: 465 SQDITPRHRTCLLLLEEVKKKNMHESAERIEHIMK 499



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 4/279 (1%)

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           KG   S  +Y++ +  L    +W+     +  M  + L  ++ T   ++   +  G  E+
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLV-TLNTVAKIMRRFAGAGEWEE 173

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IA 386
           A  + D +   G      S N ++  LCKE +V+     L Q+     +PN  T+N  I 
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSH-ITPNAHTFNIFIH 232

Query: 387 MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
             C+  +V+EA +  Q +      P       +I   C++      ++ML EM   G  P
Sbjct: 233 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPP 292

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           +S TY++++  +  +   +EAL +   ++ +   PD   YN LI    +  R + +  +F
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352

Query: 507 Q-RMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +  M   G   N  TY  ++      +E D A  L+KE+
Sbjct: 353 RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEM 391



 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 40/236 (16%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCK------------------------ 111
           K  R+ +A   ++ M G G +P V   T ++   C+                        
Sbjct: 236 KANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSI 295

Query: 112 -------SNKARK----AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV 160
                  S  A+K    A+RV   +  SG  PD+  Y  L++ L R G +  A + V +V
Sbjct: 296 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEA-ERVFRV 354

Query: 161 E--EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAYKE 217
           E  E G    T TYN+++   C H + +++++LL  +    L  P+V TY  LL   +K 
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414

Query: 218 RGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
             V E  KLL +++ +     +  +Y  L+  LC+    E A  LF ++ ++  +P
Sbjct: 415 GDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITP 470


>AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29068620-29069828 REVERSE
           LENGTH=402
          Length = 402

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 1/277 (0%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           LL  L +     +  R+   ++   + PD   +  LVN  C+ G +  A Q V  + + G
Sbjct: 126 LLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAG 185

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
                 TY + + G C   +++ + ++   +T+ G   N  +Y+ L+ G ++ + +DEA+
Sbjct: 186 CDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEAL 245

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
            LL  +      PN+ +Y VL+  LC  G+  +A+ LF+ +   G  P    Y +L++S 
Sbjct: 246 SLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSF 305

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           C     +EA+GLL  M E  L P+V+TYN LI          +A  +L +M         
Sbjct: 306 CSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFC-KKNVHKAMGLLSKMLEQNLVPDL 364

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
            +YN +IA  C  G +D   + L  M      PN+ T
Sbjct: 365 ITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRT 401



 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
           CY +L++ L R G +    +L  ++ E        T+NTLV G C  G + ++ Q +  L
Sbjct: 122 CYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWL 181

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G  P+ FTY+  + G  + + VD A K+  ++   G   N VSY  L+ GL +  + 
Sbjct: 182 IQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKI 241

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           ++A+ L   +      P+V +Y +L+ +LC  G+  EA  L  +M E  + P    Y +L
Sbjct: 242 DEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVL 301

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I S       ++A  +L+ M  +G      +YN +I   CK+  V   +  L +M+ +  
Sbjct: 302 IQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNL 360

Query: 376 SPNEGTYNA-IAMLCEQGKVQEAF 398
            P+  TYN  IA  C  G +  A+
Sbjct: 361 VPDLITYNTLIAGQCSSGNLDSAY 384



 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 1/244 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD+     L+   CK     +A + +  ++ +G  PD   YT  +   CRR  +  A ++
Sbjct: 153 PDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKV 212

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            +++ ++G     V+Y  L+ GL    K++++L LL ++      PNV TY+ L++    
Sbjct: 213 FKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCG 272

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
                EAM L   +   G +P+   Y VL+   C     ++A  L   +   G  P+V++
Sbjct: 273 SGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVIT 332

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN L++  C +    +A GLL++M E++L P ++TYN LI      G  + A+ +L  M 
Sbjct: 333 YNALIKGFC-KKNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLME 391

Query: 337 RSGF 340
            SG 
Sbjct: 392 ESGL 395



 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 136/305 (44%), Gaps = 9/305 (2%)

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           N V   + +   C+  R  D+ E+   L  K        YN LL SL   G  EE   L 
Sbjct: 91  NSVRDALFVVDFCRTMRKGDSFEIKYKLTPK-------CYNNLLSSLARFGLVEEMKRLY 143

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            EM E+ +SP + T+N L+      G   +A + +  + ++G +    +Y   I   C+ 
Sbjct: 144 TEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRR 203

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
            +VD   +   +M       NE +Y   I  L E  K+ EA  +   + +   CP     
Sbjct: 204 KEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTY 263

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             +I  LC  G    A  +  +M++ G  PD   Y+ L++  C    LDEA  +   + E
Sbjct: 264 TVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLE 323

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
           N  MP++  YNALI GFCK +    ++ +  +M+ +  VP+ ITY  L+ G      LD 
Sbjct: 324 NGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDS 382

Query: 537 AAGLM 541
           A  L+
Sbjct: 383 AYRLL 387



 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 141/311 (45%), Gaps = 35/311 (11%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
           YN L+  L   G + +  +L   + +  + P+++T++ L+ G  K   V EA + +  +I
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
             G +P+  +Y   +TG C+    + A ++F+++   G   + VSY  L+  L    + +
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           EA  LL +M +++  P+V TY +LI +L   G+  +A  +  +M+ SG       Y  +I
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
              C    +D     L+ M+     PN  TYNA+                          
Sbjct: 303 QSFCSGDTLDEASGLLEHMLENGLMPNVITYNAL-------------------------- 336

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
                   I   C+K N + A  +L +M +    PD  TY++L+ G C  G LD A  + 
Sbjct: 337 --------IKGFCKK-NVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLL 387

Query: 472 RILEENDYMPD 482
            ++EE+  +P+
Sbjct: 388 SLMEESGLVPN 398



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 2/280 (0%)

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           YN LL+ L + G  E+   L+ ++     SP + ++N L+   C  G   EA   +  + 
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           +    P   TY   IT        + AF+V  EMT++G +    SY  +I  L +  K+D
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242

Query: 362 LVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
             +  L +M      PN  TY   I  LC  G+  EA  +F+ +      P       +I
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
              C       A  +L  M + G  P+  TY++L++G C++  + +A+ +   + E + +
Sbjct: 303 QSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNLV 361

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
           PD+  YN LI G C     D +  +   M   G VPN+ T
Sbjct: 362 PDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRT 401



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 1/223 (0%)

Query: 86  HLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           ++ +++  G  PD    T  +   C+  +   A +V + +  +G   +   YT L+  L 
Sbjct: 177 YVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLF 236

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
               I  A+ L+ K+++        TY  L+  LC  G+ ++++ L  ++++ G+KP+  
Sbjct: 237 EAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDC 296

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
            Y+ L++       +DEA  LL+ ++  G  PN+++YN L+ G CK+     A+ L   +
Sbjct: 297 MYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKM 355

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
             +   P +++YN L+   C  G  + A  LL+ M+E  L P+
Sbjct: 356 LEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPN 398



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 103/206 (50%), Gaps = 1/206 (0%)

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAF 398
           + +T   YN +++ L + G V+ + +   +M+    SP+  T+N +    C+ G V EA 
Sbjct: 116 YKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAK 175

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
                L      P +    + I+  CR+     AF++  EMT+ G   +  +Y+ L+ G+
Sbjct: 176 QYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGL 235

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
                +DEAL +   +++++  P++  Y  LI   C   +   ++ +F++M   G  P++
Sbjct: 236 FEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDD 295

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
             YT+L++     + LD A+GL++ +
Sbjct: 296 CMYTVLIQSFCSGDTLDEASGLLEHM 321



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 1/160 (0%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++++A   L  M      P+V   T L+  LC S +  +A+ + + +  SGI PD   YT
Sbjct: 240 KIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYT 299

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L+   C    +  A  L+E + E+G     +TYN L+KG C    +++++ LL ++ ++
Sbjct: 300 VLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQ 358

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN 238
            L P++ TY+ L+ G      +D A +LL  +   G  PN
Sbjct: 359 NLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPN 398



 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 12/250 (4%)

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR-SGFNVTATSYNPIIARLC 355
           LAE     +S    T + + +  SL+   + A    D ++R   F    TSY  ++  LC
Sbjct: 12  LAEQSISKISYPFYTPSHVSSLFSLNLDPQTALSFSDWISRIPNFKHNVTSYASLVTLLC 71

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
            +     V +    MI    S  +  +  +   C   +  ++F I   L  K        
Sbjct: 72  SQEIPYEVPKITILMIKSCNSVRDALF--VVDFCRTMRKGDSFEIKYKLTPK-------- 121

Query: 416 C-KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
           C  N++S L R G      ++  EM +   +PD YT+++LV G C+ G + EA +    L
Sbjct: 122 CYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWL 181

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
            +    PD   Y + I G C+ +  D + ++F+ M   GC  NE++YT L+ GL    ++
Sbjct: 182 IQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKI 241

Query: 535 DIAAGLMKEL 544
           D A  L+ ++
Sbjct: 242 DEALSLLVKM 251


>AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:20791817-20793250 REVERSE
           LENGTH=477
          Length = 477

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +P       +L+ L    + +    V E ++  G  PD   Y  ++    R G      +
Sbjct: 219 RPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYR 278

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L++++ + GF     TYN L+  L +  K   +L LL+ + + G++P V  ++ L++G  
Sbjct: 279 LLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLS 338

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           +   ++     +D+ +  G  P++V Y V++TG    G  E A E+F+++  KG  P+V 
Sbjct: 339 RAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVF 398

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +YN ++R  C  G+++EA  LL EM+    +P+ V Y+ L+ +L   G+  +A EV+ +M
Sbjct: 399 TYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDM 458

Query: 336 TRSGFNVTATS 346
              G  V   S
Sbjct: 459 VEKGHYVHLIS 469



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 10/341 (2%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAV-RVMEMIVGSGI 130
           D K++  +L  A+    +  G+      A    LL  +       KA+ R+++ ++  G 
Sbjct: 126 DNKTRCAKL--AYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGY 183

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVE---KVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
            P  AC  +L+  +C  G  G A  +VE   K +   ++    +YN ++  L    +   
Sbjct: 184 -PTTACTFNLL--ICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKL 240

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
              + +++ + G  P+V TY+ ++   ++    D   +LLD+++  G  P+L +YN+LL 
Sbjct: 241 IDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLH 300

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
            L    +   A+ L   +   G  P V+ +  L+  L   G+ E     + E  +   +P
Sbjct: 301 HLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTP 360

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
            VV Y ++IT     G  E+A E+  EMT  G      +YN +I   C  GK       L
Sbjct: 361 DVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALL 420

Query: 368 DQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNK 407
            +M  R  +PN   Y+ +   L   GKV EA  + + +  K
Sbjct: 421 KEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEK 461



 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 37/321 (11%)

Query: 210 LLEGAYKERGVDEAM-KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
           LL   + E G  +AM +L+D++I  G      ++N+L+    + G   D +E F      
Sbjct: 157 LLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTF 216

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
            + P   SYN +L SL    +++  + +  +M E+  +P V+T                 
Sbjct: 217 NYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLT----------------- 259

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AM 387
                             YN ++    + GK D + + LD+M+   +SP+  TYN +   
Sbjct: 260 ------------------YNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           L    K   A  +   +      P   +   +I  L R G        + E  K G TPD
Sbjct: 302 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 361

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
              Y+ ++ G    G L++A E+F+ + E   +P++  YN++I GFC   +   +  + +
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLK 421

Query: 508 RMVNKGCVPNEITYTILVEGL 528
            M ++GC PN + Y+ LV  L
Sbjct: 422 EMESRGCNPNFVVYSTLVNNL 442



 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 59  SIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKA 118
           +I    N+R+GK D+          +  L+ MV  G  PD+     LL+ L   NK   A
Sbjct: 261 NIVMFANFRLGKTDR---------LYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAA 311

Query: 119 VRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKG 178
           + ++  +   G+ P    +T L++ L R G +      +++  + G     V Y  ++ G
Sbjct: 312 LNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITG 371

Query: 179 LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN 238
             S G+L ++ ++   +T+KG  PNVFTY+ ++ G        EA  LL ++ +RG  PN
Sbjct: 372 YISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPN 431

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
            V Y+ L+  L   G+  +A E+ +D+  KG    ++S
Sbjct: 432 FVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGHYVHLIS 469



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 15/251 (5%)

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           +E+   +   Y++L+   +  G  +    ++DEM + G+  TA ++N +I   C  G+  
Sbjct: 145 QENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLI---CTCGEAG 201

Query: 362 LVVQCLDQMICRR---YSPNEGTYNAI---AMLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
           L    ++Q I  +   Y P + +YNAI    +  +Q K+ +  ++++ +      P  D 
Sbjct: 202 LARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLID--WVYEQMLEDGFTP--DV 257

Query: 416 CKNVISMLC--RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
               I M    R G T   +++L EM K GF+PD YTY+ L+  +        AL +   
Sbjct: 258 LTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNH 317

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           + E    P + ++  LI G  +  + +         V  GC P+ + YT+++ G     E
Sbjct: 318 MREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGE 377

Query: 534 LDIAAGLMKEL 544
           L+ A  + KE+
Sbjct: 378 LEKAEEMFKEM 388



 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 5/281 (1%)

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F  +   Y++L++     G ++    L+ EM ++    +  T+N+LI +    G      
Sbjct: 148 FRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVV 207

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC 389
           E   +     +     SYN I+  L    +  L+    +QM+   ++P+  TYN I M  
Sbjct: 208 EQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYN-IVMFA 266

Query: 390 --EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT-YPAFQMLYEMTKCGFTP 446
               GK    + +   +      P   Y  N++      GN    A  +L  M + G  P
Sbjct: 267 NFRLGKTDRLYRLLDEMVKDGFSP-DLYTYNILLHHLATGNKPLAALNLLNHMREVGVEP 325

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
               +++L+ G+ R G L+          +    PD+  Y  +I G+      + + E+F
Sbjct: 326 GVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMF 385

Query: 507 QRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           + M  KG +PN  TY  ++ G     +   A  L+KE+  R
Sbjct: 386 KEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESR 426


>AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:5760793-5762619 FORWARD
           LENGTH=608
          Length = 608

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 168/363 (46%), Gaps = 24/363 (6%)

Query: 121 VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC 180
           V++ ++G G  P+   +  ++   CR G +  A Q+V  +   G       ++ LV G  
Sbjct: 199 VLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFF 258

Query: 181 SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
             G+  +++ L +++ + G  PN+ TY+ L++G      VDEA  +L  + + G  P++V
Sbjct: 259 RSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIV 318

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA----NGL 296
             N+++    + GR E+A ++F  L  +   P   ++  +L SLC  G+++      +G+
Sbjct: 319 LCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSGKFDLVPRITHGI 378

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
             + D       +VT N+L    S  G    A +VL  M+   F +   +Y   ++ LC+
Sbjct: 379 GTDFD-------LVTGNLLSNCFSKIGYNSYALKVLSIMSYKDFALDCYTYTVYLSALCR 431

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
            G     ++    +I  +   +   ++AI   L E GK   A  +F      + C +  Y
Sbjct: 432 GGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLF------KRCILEKY 485

Query: 416 CKNVISM------LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
             +V+S       L R      A+ +  +M + G  P+  TY +++ G+C+E   ++  +
Sbjct: 486 PLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRK 545

Query: 470 IFR 472
           I R
Sbjct: 546 ILR 548



 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 187/410 (45%), Gaps = 48/410 (11%)

Query: 141 VNFLCRRGN----IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           ++  C RG     +G  + L   + E GF      +  +++  C  G ++++ Q++  + 
Sbjct: 181 LSHFCSRGGRGDLVGVKIVLKRMIGE-GFYPNRERFGQILRLCCRTGCVSEAFQVVGLMI 239

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
             G+  +V  +S L+ G ++     +A+ L + +I  G  PNLV+Y  L+ G    G  +
Sbjct: 240 CSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVD 299

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           +A  +   + ++G +P +V  N+++ +    GR+EEA  +   +++  L P   T+  ++
Sbjct: 300 EAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASIL 359

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
           +SL L G+    F+++  +T        T ++ +          +L+  C  ++      
Sbjct: 360 SSLCLSGK----FDLVPRITHG----IGTDFDLVTG--------NLLSNCFSKI------ 397

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQM 435
                YN+ A+     KV        S+ + ++  +  Y   V +S LCR G    A +M
Sbjct: 398 ----GYNSYAL-----KV-------LSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKM 441

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR--ILEENDYMPDIDNYNALILGF 493
              + K     D++ +S+++  +   G  + A+ +F+  ILE+  Y  D+ +Y   I G 
Sbjct: 442 YKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEK--YPLDVVSYTVAIKGL 499

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            + +R + +  +   M   G  PN  TY  ++ GL  E E +    +++E
Sbjct: 500 VRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRE 549



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 192/434 (44%), Gaps = 49/434 (11%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           KA+ V   +   G +P+      +++   +   +  A+++ E +    F     +++  +
Sbjct: 126 KAIEVYTGMSSFGFVPNTRAMNMMMDVNFKLNVVNGALEIFEGIRFRNF----FSFDIAL 181

Query: 177 KGLCSHGKLNQSLQL---LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
              CS G     + +   L R+  +G  PN   +  +L    +   V EA +++  +I  
Sbjct: 182 SHFCSRGGRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICS 241

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G   ++  +++L++G  + G  + A++LF  +   G SP++V+Y  L++     G  +EA
Sbjct: 242 GISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEA 301

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             +L+++  E L+P +V  N++I + +  GR E+A +V   + +                
Sbjct: 302 FTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEK---------------- 345

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPM 412
                              R+  P++ T+ +I + LC  GK      I   +G   +   
Sbjct: 346 -------------------RKLVPDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDLVT 386

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
            +   N  S +   G    A ++L  M+   F  D YTY+  +  +CR G    A+++++
Sbjct: 387 GNLLSNCFSKI---GYNSYALKVLSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYK 443

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
           I+ +     D   ++A+I    +  + + ++ +F+R + +    + ++YT+ ++GL    
Sbjct: 444 IIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAK 503

Query: 533 ELDIAAGL---MKE 543
            ++ A  L   MKE
Sbjct: 504 RIEEAYSLCCDMKE 517



 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 171/375 (45%), Gaps = 8/375 (2%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L+ M+G+G  P+  +  Q+L   C++    +A +V+ +++ SGI      ++ LV+   R
Sbjct: 200 LKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFR 259

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G    A+ L  K+ + G     VTY +L+KG    G ++++  +L ++  +GL P++  
Sbjct: 260 SGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVL 319

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
            + ++    +    +EA K+   +  R   P+  ++  +L+ LC  G+ +    +   + 
Sbjct: 320 CNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSGKFDLVPRITHGI- 378

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
             G    +V+ N+L       G    A  +L+ M  +D +    TY + +++L   G   
Sbjct: 379 --GTDFDLVTGNLLSNCFSKIGYNSYALKVLSIMSYKDFALDCYTYTVYLSALCRGGAPR 436

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AI 385
            A ++   + +   ++ A  ++ II  L + GK +  V    + I  +Y  +  +Y  AI
Sbjct: 437 AAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAI 496

Query: 386 AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
             L    +++EA+ +   +      P     + +IS LC++  T    ++L E  + G  
Sbjct: 497 KGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVE 556

Query: 446 PDSYT----YSSLVR 456
            D  T    YS L R
Sbjct: 557 LDPNTKFQVYSLLSR 571



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 134/324 (41%), Gaps = 32/324 (9%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           +++AF  +  M+  G    V   + L+    +S + +KAV +   ++  G  P+   YT 
Sbjct: 228 VSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTS 287

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+      G +  A  ++ KV+  G     V  N ++      G+  ++ ++   L K+ 
Sbjct: 288 LIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRK 347

Query: 200 LKPNVFTYSF-------------------------------LLEGAYKERGVDE-AMKLL 227
           L P+ +T++                                LL   + + G +  A+K+L
Sbjct: 348 LVPDQYTFASILSSLCLSGKFDLVPRITHGIGTDFDLVTGNLLSNCFSKIGYNSYALKVL 407

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
             +  +    +  +Y V L+ LC+ G    AI++++ +  +        ++ ++ SL   
Sbjct: 408 SIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIEL 467

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           G++  A  L      E     VV+Y + I  L    R E+A+ +  +M   G      +Y
Sbjct: 468 GKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTY 527

Query: 348 NPIIARLCKEGKVDLVVQCLDQMI 371
             II+ LCKE + + V + L + I
Sbjct: 528 RTIISGLCKEKETEKVRKILRECI 551


>AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22180231-22181652 REVERSE
           LENGTH=473
          Length = 473

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%)

Query: 121 VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC 180
           V + ++  G  PD   Y  L+    R G +    +L +++   GF   + TYN L+  L 
Sbjct: 241 VYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILG 300

Query: 181 SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
              K   +L  L+ + + G+ P+V  Y+ L++G  +   ++     LD+++  G  P++V
Sbjct: 301 KGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVV 360

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
            Y V++TG    G  + A E+FR++  KG  P+V +YN ++R LC  G + EA  LL EM
Sbjct: 361 CYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEM 420

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
           +    +P+ V Y+ L++ L   G+  +A +V+ EM + G  V
Sbjct: 421 ESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYV 462



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 154/350 (44%), Gaps = 17/350 (4%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN-------FLCRRGNIGYAMQLV 157
           +L +L   NKAR A       + SG   +  C+ H VN            G      +LV
Sbjct: 116 ILRNLSYDNKARCAKLAYRFFLWSG---EQECFRHTVNSYHLLMKIFAECGEYKAMWRLV 172

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK---GLKPNVFTYSFLLEGA 214
           +++ + GF T   T+N L+   CS G+   + Q + +  K      +P   +Y+ +L   
Sbjct: 173 DEMVQDGFPTTARTFNLLI---CSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSL 229

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
              +       +   ++  G  P++++YN+LL    + G+ +    LF ++   GFSP  
Sbjct: 230 LGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDS 289

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
            +YNILL  L    +   A   L  M E  + PSV+ Y  LI  LS  G  E     LDE
Sbjct: 290 YTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDE 349

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
           M ++G       Y  +I      G++D   +   +M  +   PN  TYN+ I  LC  G+
Sbjct: 350 MVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGE 409

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
            +EA ++ + + ++   P       ++S L + G    A +++ EM K G
Sbjct: 410 FREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 4/227 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  PDV     LL+   +  K  +  R+ + +   G  PD+  Y  L++ L +   
Sbjct: 245 MLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNK 304

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A+  +  ++E G     + Y TL+ GL   G L      LD + K G +P+V  Y+ 
Sbjct: 305 PLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTV 364

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           ++ G      +D+A ++  ++  +G  PN+ +YN ++ GLC  G   +A  L +++ ++G
Sbjct: 365 MITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRG 424

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE----DLSPSVVTY 312
            +P+ V Y+ L+  L   G+  EA  ++ EM ++     L P ++ Y
Sbjct: 425 CNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHLVPKMMKY 471



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 137/305 (44%), Gaps = 1/305 (0%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           SY++L+    + G  +    L  ++   GF  +  ++N+L+ S    G  ++A     + 
Sbjct: 151 SYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKS 210

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
              +  P   +YN ++ SL    + +    V  +M   GF+    +YN ++    + GK+
Sbjct: 211 KTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKM 270

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQNCPMHDYCKNV 419
           D   +  D+M    +SP+  TYN +  +  +G K   A      +      P   +   +
Sbjct: 271 DRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTL 330

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           I  L R GN       L EM K G  PD   Y+ ++ G    G LD+A E+FR +     
Sbjct: 331 IDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQ 390

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAG 539
           +P++  YN++I G C       +  + + M ++GC PN + Y+ LV  L    +L  A  
Sbjct: 391 LPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARK 450

Query: 540 LMKEL 544
           +++E+
Sbjct: 451 VIREM 455



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 150/329 (45%), Gaps = 9/329 (2%)

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAM-KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            +  V +Y  L++  + E G  +AM +L+D+++  G      ++N+L+    + G  + A
Sbjct: 145 FRHTVNSYHLLMK-IFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQA 203

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
           +  F       + P   SYN +L SL    +++    +  +M E+  SP V+TYNIL+ +
Sbjct: 204 VVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWT 263

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               G+ ++   + DEM R GF+  + +YN ++  L K  K    +  L+ M      P+
Sbjct: 264 NYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPS 323

Query: 379 EGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAFQML 436
              Y   I  L   G ++   +    +  K  C     C  V I+     G    A +M 
Sbjct: 324 VLHYTTLIDGLSRAGNLEACKYFLDEM-VKAGCRPDVVCYTVMITGYVVSGELDKAKEMF 382

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            EMT  G  P+ +TY+S++RG+C  G   EA  + + +E     P+   Y+ L+    K 
Sbjct: 383 REMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKA 442

Query: 497 QRTDLSIEIFQRMVNKG----CVPNEITY 521
            +   + ++ + MV KG     VP  + Y
Sbjct: 443 GKLSEARKVIREMVKKGHYVHLVPKMMKY 471



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 5/278 (1%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII---PDAACYTHLVNFLCRRGNIGYA 153
           P  A+   LL  +C   +A  A + +   + S      P    Y  ++N L         
Sbjct: 181 PTTARTFNLL--ICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLI 238

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             + +++ E GF    +TYN L+      GK+++  +L D + + G  P+ +TY+ LL  
Sbjct: 239 EWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHI 298

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K      A+  L+ +   G +P+++ Y  L+ GL + G  E       ++   G  P 
Sbjct: 299 LGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPD 358

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           VV Y +++      G  ++A  +  EM  +   P+V TYN +I  L + G   +A  +L 
Sbjct: 359 VVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLK 418

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           EM   G N     Y+ +++ L K GK+    + + +M+
Sbjct: 419 EMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMV 456



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 9/217 (4%)

Query: 59  SIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKA 118
           +I    N+R+GK D+     RL D       M   G  PD      LL+ L K NK   A
Sbjct: 258 NILLWTNYRLGKMDRFD---RLFDE------MARDGFSPDSYTYNILLHILGKGNKPLAA 308

Query: 119 VRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKG 178
           +  +  +   GI P    YT L++ L R GN+      ++++ + G +   V Y  ++ G
Sbjct: 309 LTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITG 368

Query: 179 LCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN 238
               G+L+++ ++   +T KG  PNVFTY+ ++ G        EA  LL ++ +RG  PN
Sbjct: 369 YVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPN 428

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
            V Y+ L++ L K G+  +A ++ R++  KG    +V
Sbjct: 429 FVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHLV 465



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 125/282 (44%), Gaps = 7/282 (2%)

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F  +V SY++L++     G ++    L+ EM ++    +  T+N+LI S    G  +QA 
Sbjct: 145 FRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQA- 203

Query: 330 EVLDEMTRSGFNVTA--TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
            V+  M    FN      SYN I+  L    +  L+     QM+   +SP+  TYN +  
Sbjct: 204 -VVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLW 262

Query: 388 LCEQ-GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT-YPAFQMLYEMTKCGFT 445
              + GK+     +F  +      P   Y  N++  +  KGN    A   L  M + G  
Sbjct: 263 TNYRLGKMDRFDRLFDEMARDGFSP-DSYTYNILLHILGKGNKPLAALTTLNHMKEVGID 321

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
           P    Y++L+ G+ R G L+        + +    PD+  Y  +I G+      D + E+
Sbjct: 322 PSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEM 381

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           F+ M  KG +PN  TY  ++ GL    E   A  L+KE+  R
Sbjct: 382 FREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESR 423



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 131/279 (46%), Gaps = 17/279 (6%)

Query: 280 LLRSLCYEGRWEEAN----GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +LR+L Y+ +   A       L   ++E    +V +Y++L+   +  G  +  + ++DEM
Sbjct: 116 ILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEM 175

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR---YSPNEGTYNAIA---MLC 389
            + GF  TA ++N +I   C  G+  L  Q + Q +  +   Y P + +YNAI    +  
Sbjct: 176 VQDGFPTTARTFNLLI---CSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGV 232

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY-EMTKCGFTPDS 448
           +Q K+ E  +  Q L +  +  +  Y  N++     +      F  L+ EM + GF+PDS
Sbjct: 233 KQYKLIEWVYK-QMLEDGFSPDVLTY--NILLWTNYRLGKMDRFDRLFDEMARDGFSPDS 289

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           YTY+ L+  + +      AL     ++E    P + +Y  LI G  +    +        
Sbjct: 290 YTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDE 349

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           MV  GC P+ + YT+++ G     ELD A  + +E+ ++
Sbjct: 350 MVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVK 388


>AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:8017771-8019459 REVERSE
           LENGTH=562
          Length = 562

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 161/343 (46%), Gaps = 13/343 (3%)

Query: 67  RVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIV 126
           R+ K+ + +K V   DAFL +E     G K D      L+  L K N    A  V   + 
Sbjct: 212 RLAKSGKYNKAV---DAFLEMEK--SYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLF 266

Query: 127 GSGIIPDAACYTHLVNFLC--RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK 184
            + I PDA  +  L++  C  R+ +   AM  + KV E  F    VTY + V+  C  G 
Sbjct: 267 DT-IKPDARTFNILIHGFCKARKFDDARAMMDLMKVTE--FTPDVVTYTSFVEAYCKEGD 323

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
             +  ++L+ + + G  PNV TY+ ++    K + V EA+ + + +   G  P+   Y+ 
Sbjct: 324 FRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSS 383

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           L+  L K GR +DA E+F D+  +G    V+ YN ++ +  +  R E A  LL  M++E+
Sbjct: 384 LIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEE 443

Query: 305 ---LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
               SP+V TY  L+       + +    +L  M ++  ++  ++Y  +I  LC  GKV+
Sbjct: 444 GESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVE 503

Query: 362 LVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSL 404
                 ++ + +   P + T   +    E+  + EA    QSL
Sbjct: 504 EACLFFEEAVRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSL 546



 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 182/415 (43%), Gaps = 49/415 (11%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           +G +     Y  +V+ L +  N     +LV ++ ++  ++  VT +T+ K          
Sbjct: 160 TGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNE-ESKLVTLDTMSK---------- 208

Query: 188 SLQLLDRLTKKGLKPNVFTYSFL-LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
              ++ RL K G K N    +FL +E +Y                  G + + ++ N L+
Sbjct: 209 ---VMRRLAKSG-KYNKAVDAFLEMEKSY------------------GVKTDTIAMNSLM 246

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
             L KE   E A E+F  L      P   ++NIL+   C   ++++A  ++  M   + +
Sbjct: 247 DALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFT 305

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
           P VVTY   + +    G   +  E+L+EM  +G N    +Y  ++  L K  +V   +  
Sbjct: 306 PDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGV 365

Query: 367 LDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGN---KQNCPMHDYCKNVISM 422
            ++M      P+   Y++ I +L + G+ ++A  IF+ + N   +++  +++    +IS 
Sbjct: 366 YEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYN---TMISA 422

Query: 423 LCRKGNTYPAFQMLYEMT-----KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
                    A ++L  M       C  +P+  TY+ L++  C +  +     +   + +N
Sbjct: 423 ALHHSRDEMALRLLKRMEDEEGESC--SPNVETYAPLLKMCCHKKKMKLLGILLHHMVKN 480

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
           D   D+  Y  LI G C   + + +   F+  V KG VP + T  +LV+ L  +N
Sbjct: 481 DVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKKN 535



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 160/357 (44%), Gaps = 10/357 (2%)

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVL---LTGLCKEGRTEDAIELF 262
           TY+ +++   K R  D   +L++++  +  E  LV+ + +   +  L K G+   A++ F
Sbjct: 168 TYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAF 226

Query: 263 RDL-PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
            ++  + G     ++ N L+ +L  E   E A+ +  ++  + + P   T+NILI     
Sbjct: 227 LEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCK 285

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
             + + A  ++D M  + F     +Y   +   CKEG    V + L++M     +PN  T
Sbjct: 286 ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVT 345

Query: 382 YNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
           Y  +   L +  +V EA  +++ +      P   +  ++I +L + G    A ++  +MT
Sbjct: 346 YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMT 405

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND---YMPDIDNYNALILGFCKYQ 497
             G   D   Y++++         + AL + + +E+ +     P+++ Y  L+   C  +
Sbjct: 406 NQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKK 465

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRST 554
           +  L   +   MV      +  TY +L+ GL    +++ A    +E   + ++ R +
Sbjct: 466 KMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDS 522



 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 131/284 (46%), Gaps = 13/284 (4%)

Query: 269 GFSPSVVSYNILLRSL--C--YEGRWEEANGLLAEMDEEDLSPSVV--TYNILITSLSLH 322
           G+  S  +YN ++  L  C  ++  WE    L+ EM++ + S  V   T + ++  L+  
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWE----LVNEMNKNEESKLVTLDTMSKVMRRLAKS 216

Query: 323 GRTEQAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
           G+  +A +   EM +S G      + N ++  L KE  ++   +   ++      P+  T
Sbjct: 217 GKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLF-DTIKPDART 275

Query: 382 YNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
           +N  I   C+  K  +A  +   +   +  P      + +   C++G+     +ML EM 
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR 335

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           + G  P+  TY+ ++  + +   + EAL ++  ++E+  +PD   Y++LI    K  R  
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFK 395

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            + EIF+ M N+G   + + Y  ++      +  ++A  L+K +
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRM 439


>AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810164 REVERSE
           LENGTH=591
          Length = 591

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 221/528 (41%), Gaps = 49/528 (9%)

Query: 45  RVLASAQISISP---KDSIFTLPNWRVGKND--QKSKEVRLNDAF----LHLEYMVGKGQ 95
           ++L+  Q    P    D +  LP+     +D    S ++RLN  +    L  E+++ K  
Sbjct: 91  KILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSS 150

Query: 96  -KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
            +PDV     L+    +  + ++A  +   ++ S  +P    Y  L+   C  G I  A 
Sbjct: 151 FQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAE 210

Query: 155 QLVEKVEEHGFQ---TGTVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
            ++ +++ H       G   YN  ++GL    G   +++ +  R+ +   KP   TY+ +
Sbjct: 211 VVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLM 270

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           +    K      + KL  ++ +   +PN+ +Y  L+    +EG  E A E+F  L   G 
Sbjct: 271 INLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGL 330

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P V  YN L+ S    G    A  + + M      P   +YNI++ +    G    A  
Sbjct: 331 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEA 390

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
           V +EM R G   T  S+  +++   K   V    +C  + I +  S N            
Sbjct: 391 VFEEMKRLGIAPTMKSHMLLLSAYSKARDV---TKC--EAIVKEMSEN------------ 433

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
              V+   F+  S+ N               +  R G      ++L EM     T D  T
Sbjct: 434 --GVEPDTFVLNSMLN---------------LYGRLGQFTKMEKILAEMENGPCTADIST 476

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y+ L+    + G L+   E+F  L+E ++ PD+  + + I  + + +     +E+F+ M+
Sbjct: 477 YNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRL 558
           + GC P+  T  +L+   + E +++    +++ ++ + V   S V +L
Sbjct: 537 DSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMH-KGVTVSSLVPKL 583



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 3/205 (1%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           +DA    E M   G  P +     LL    K+    K   +++ +  +G+ PD      +
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           +N   R G      +++ ++E         TYN L+      G L +  +L   L +K  
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505

Query: 201 KPNVFTYSFLLEGAYKERGV-DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           +P+V T++  + GAY  + +  + +++ +++I  G  P+  +  VLL+    E + E   
Sbjct: 506 RPDVVTWTSRI-GAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVT 564

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSL 284
            + R +  KG + S +   ++ +SL
Sbjct: 565 SVLRTM-HKGVTVSSLVPKLMAKSL 588


>AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14807589-14810072 REVERSE
           LENGTH=613
          Length = 613

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/528 (22%), Positives = 219/528 (41%), Gaps = 49/528 (9%)

Query: 45  RVLASAQISISP---KDSIFTLPNWRVGKND--QKSKEVRLNDAF----LHLEYMVGKGQ 95
           ++L+  Q    P    D +  LP+     +D    S ++RLN  +    L  E+++ K  
Sbjct: 113 KILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSS 172

Query: 96  -KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
            +PDV     L+    +  + ++A  +   ++ S  +P    Y  L+   C  G I  A 
Sbjct: 173 FQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAE 232

Query: 155 QLVEKVEEHGFQ---TGTVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
            ++ +++ H       G   YN  ++GL    G   +++ +  R+ +   KP   TY+ +
Sbjct: 233 VVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLM 292

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           +    K      + KL  ++ +   +PN+ +Y  L+    +EG  E A E+F  L   G 
Sbjct: 293 INLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGL 352

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P V  YN L+ S    G    A  + + M      P   +YNI++ +    G    A  
Sbjct: 353 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEA 412

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
           V +EM R G   T  S+  +++   K   V    +C                 AI     
Sbjct: 413 VFEEMKRLGIAPTMKSHMLLLSAYSKARDV---TKC----------------EAIVKEMS 453

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           +  V+   F+  S+ N               +  R G      ++L EM     T D  T
Sbjct: 454 ENGVEPDTFVLNSMLN---------------LYGRLGQFTKMEKILAEMENGPCTADIST 498

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y+ L+    + G L+   E+F  L+E ++ PD+  + + I  + + +     +E+F+ M+
Sbjct: 499 YNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI 558

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRL 558
           + GC P+  T  +L+   + E +++    +++ ++ + V   S V +L
Sbjct: 559 DSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMH-KGVTVSSLVPKL 605



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 3/205 (1%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           +DA    E M   G  P +     LL    K+    K   +++ +  +G+ PD      +
Sbjct: 408 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 467

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           +N   R G      +++ ++E         TYN L+      G L +  +L   L +K  
Sbjct: 468 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 527

Query: 201 KPNVFTYSFLLEGAYKERGV-DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           +P+V T++  + GAY  + +  + +++ +++I  G  P+  +  VLL+    E + E   
Sbjct: 528 RPDVVTWTSRI-GAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVT 586

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSL 284
            + R +  KG + S +   ++ +SL
Sbjct: 587 SVLRTM-HKGVTVSSLVPKLMAKSL 610


>AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:3606490-3608409 FORWARD
           LENGTH=602
          Length = 602

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 169/390 (43%), Gaps = 15/390 (3%)

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF---TYSFLLEGAYKERGV 220
           GF      ++++V  LC   +   +  L+    +     N+    T+  L+    +   V
Sbjct: 130 GFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMV 189

Query: 221 DEAMKLLDDIIARGGEP------NLVSYNVLLTGLCKEGRTEDA---IELFRDLPAKGFS 271
            +A++  +   AR  EP       L    VLL  LCKEG   +A   +E         + 
Sbjct: 190 QQAIRAFE--FARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWV 247

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           PSV  +NILL       + ++A  L  EM   ++ P+VVTY  LI       R + A EV
Sbjct: 248 PSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEV 307

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCE 390
           L+EM  +   +    +NPII  L + G++   +  +++       P   TYN++    C+
Sbjct: 308 LEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCK 367

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
            G +  A  I + +  +   P      +      +   T     + +++ + G +PD  T
Sbjct: 368 AGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLT 427

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y  +++ +C +G L  A+++ + ++     PD+     LI   C+ +  + + E F   V
Sbjct: 428 YHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAV 487

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGL 540
            +G +P  IT+ ++  GL  +   D+A  L
Sbjct: 488 RRGIIPQYITFKMIDNGLRSKGMSDMAKRL 517



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 21/374 (5%)

Query: 102 ATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           A  L++D  +S++            GS ++  A  +  L+    R G +  A++  E   
Sbjct: 154 AWSLVFDRVRSDE------------GSNLV-SADTFIVLIRRYARAGMVQQAIRAFEFAR 200

Query: 162 EHGFQTGTVT----YNTLVKGLCSHGKLNQSLQLLDRL---TKKGLKPNVFTYSFLLEGA 214
            +     + T       L+  LC  G + ++   L+R+         P+V  ++ LL G 
Sbjct: 201 SYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGW 260

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
           ++ R + +A KL +++ A   +P +V+Y  L+ G C+  R + A+E+  ++       + 
Sbjct: 261 FRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINF 320

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           + +N ++  L   GR  EA G++      +  P++VTYN L+ +    G    A ++L  
Sbjct: 321 MVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM 380

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGK 393
           M   G + T T+YN       K  K +  +    ++I   +SP+  TY+ I  MLCE GK
Sbjct: 381 MMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           +  A  + + + N+   P       +I +LCR      AF+      + G  P   T+  
Sbjct: 441 LSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKM 500

Query: 454 LVRGMCREGMLDEA 467
           +  G+  +GM D A
Sbjct: 501 IDNGLRSKGMSDMA 514



 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 3/295 (1%)

Query: 72  DQKSKEVRLNDAFLHLEYMVG---KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           D   KE  + +A ++LE + G       P V     LL    +S K ++A ++ E +   
Sbjct: 220 DALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAM 279

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
            + P    Y  L+   CR   +  AM+++E+++    +   + +N ++ GL   G+L+++
Sbjct: 280 NVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEA 339

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           L +++R       P + TY+ L++   K   +  A K+L  ++ RG +P   +YN     
Sbjct: 340 LGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKY 399

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
             K  +TE+ + L+  L   G SP  ++Y+++L+ LC +G+   A  +  EM    + P 
Sbjct: 400 FSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPD 459

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           ++T  +LI  L      E+AFE  D   R G      ++  I   L  +G  D+ 
Sbjct: 460 LLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMA 514



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 177/447 (39%), Gaps = 60/447 (13%)

Query: 126 VGSGIIPDAACYT-----------HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
           + S  +PD+ C               ++ L    ++     L   ++E G +      + 
Sbjct: 47  IQSPAVPDSTCTPPQQNTVSKTDLSTISNLLENTDVVPGSSLESALDETGIEPSVELVHA 106

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L   L S   L  S+     + K G   +   +  ++    K R  + A  L+ D +   
Sbjct: 107 LFDRLSSSPMLLHSVFKWAEM-KPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSD 165

Query: 235 GEPNLVS---YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS------YNILLRSLC 285
              NLVS   + VL+    + G  + AI  F    A+ + P   S        +LL +LC
Sbjct: 166 EGSNLVSADTFIVLIRRYARAGMVQQAIRAFEF--ARSYEPVCKSATELRLLEVLLDALC 223

Query: 286 YEGRWEEANGLLAEMD---EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
            EG   EA+  L  +    + +  PSV  +NIL+       + +QA ++ +EM       
Sbjct: 224 KEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKP 283

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQ 402
           T  +Y  +I   C+  +V + ++ L++M                   +  +++  F +F 
Sbjct: 284 TVVTYGTLIEGYCRMRRVQIAMEVLEEM-------------------KMAEMEINFMVFN 324

Query: 403 SLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
                           +I  L   G    A  M+     C   P   TY+SLV+  C+ G
Sbjct: 325 P---------------IIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAG 369

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            L  A +I +++      P    YN     F K+ +T+  + ++ +++  G  P+ +TY 
Sbjct: 370 DLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYH 429

Query: 523 ILVEGLAFENELDIAAGLMKELYMREV 549
           ++++ L  + +L +A  + KE+  R +
Sbjct: 430 LILKMLCEDGKLSLAMQVNKEMKNRGI 456



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 89/183 (48%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           RL++A   +E        P +     L+ + CK+     A ++++M++  G+ P    Y 
Sbjct: 335 RLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYN 394

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           H   +  +       M L  K+ E G     +TY+ ++K LC  GKL+ ++Q+   +  +
Sbjct: 395 HFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNR 454

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G+ P++ T + L+    +   ++EA +  D+ + RG  P  +++ ++  GL  +G ++ A
Sbjct: 455 GIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMA 514

Query: 259 IEL 261
             L
Sbjct: 515 KRL 517



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 92/192 (47%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           L ++ +  +A+ +ME        P    Y  LV   C+ G++  A ++++ +   G    
Sbjct: 330 LGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPT 389

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T TYN   K    H K  + + L  +L + G  P+  TY  +L+   ++  +  AM++  
Sbjct: 390 TTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNK 449

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           ++  RG +P+L++  +L+  LC+    E+A E F +   +G  P  +++ ++   L  +G
Sbjct: 450 EMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKG 509

Query: 289 RWEEANGLLAEM 300
             + A  L + M
Sbjct: 510 MSDMAKRLSSLM 521


>AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR)
           repeat-containing protein | chr4:9257985-9260093 FORWARD
           LENGTH=702
          Length = 702

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 73  QKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP 132
           +KSK++  ++     + M+ +G KPD A  T ++    ++   ++AV   E +   G  P
Sbjct: 186 RKSKDLEKSEKLF--DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEP 243

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D      +++   R GN+  A+ L ++     ++   VT++TL++     G  +  L + 
Sbjct: 244 DNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIY 303

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           + +   G+KPN+  Y+ L++   + +   +A  +  D+I  G  PN  +Y  L+    + 
Sbjct: 304 EEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRA 363

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW-EEANGLLAEMDE-EDLSPSVV 310
              +DA+ ++R++  KG S +V+ YN LL S+C + R+ +EA  +  +M   E   P   
Sbjct: 364 RYGDDALAIYREMKEKGLSLTVILYNTLL-SMCADNRYVDEAFEIFQDMKNCETCDPDSW 422

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T++ LIT  +  GR  +A   L +M  +GF  T      +I    K  +VD VV+  DQ+
Sbjct: 423 TFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQV 482

Query: 371 ICRRYSPNE 379
           +    +P++
Sbjct: 483 LELGITPDD 491



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 142/315 (45%), Gaps = 2/315 (0%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           + YN  +K       L +S +L D + ++G+KP+  T++ ++  A +      A++  + 
Sbjct: 176 ILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEK 235

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           + + G EP+ V+   ++    + G  + A+ L+     + +    V+++ L+R     G 
Sbjct: 236 MSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGN 295

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
           ++    +  EM    + P++V YN LI S+    R  QA  +  ++  +GF    ++Y  
Sbjct: 296 YDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAA 355

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK-VQEAFFIFQSLGNKQ 408
           ++    +    D  +    +M  +  S     YN +  +C   + V EAF IFQ + N +
Sbjct: 356 LVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCE 415

Query: 409 NCPMHDYC-KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
            C    +   ++I++    G    A   L +M + GF P  +  +S+++   +   +D+ 
Sbjct: 416 TCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDV 475

Query: 468 LEIFRILEENDYMPD 482
           +  F  + E    PD
Sbjct: 476 VRTFDQVLELGITPD 490



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 139/323 (43%), Gaps = 4/323 (1%)

Query: 200 LKPN--VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
           +KP+  V  Y+  ++   K + ++++ KL D+++ RG +P+  ++  +++   + G  + 
Sbjct: 169 MKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKR 228

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A+E F  + + G  P  V+   ++ +    G  + A  L      E      VT++ LI 
Sbjct: 229 AVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIR 288

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
              + G  +    + +EM   G       YN +I  + +  +          +I   ++P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 378 NEGTYNAIAMLCEQGKV-QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           N  TY A+     + +   +A  I++ +  K           ++SM         AF++ 
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIF 408

Query: 437 YEMTKC-GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
            +M  C    PDS+T+SSL+      G + EA      + E  + P +    ++I  + K
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468

Query: 496 YQRTDLSIEIFQRMVNKGCVPNE 518
            ++ D  +  F +++  G  P++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDD 491



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 34/274 (12%)

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
           S  V+ YN+ ++        E++  L  EM E  + P   T+  +I+    +G  ++A E
Sbjct: 172 SREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE 231

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
             ++M+  G      +   +I    + G VD+ +   D+    ++  +  T++ +     
Sbjct: 232 WFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTL----- 286

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
                    I+   GN      +D C N+                  EM   G  P+   
Sbjct: 287 -------IRIYGVSGN------YDGCLNIYE----------------EMKALGVKPNLVI 317

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y+ L+  M R     +A  I++ L  N + P+   Y AL+  + + +  D ++ I++ M 
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            KG     I Y  L+   A    +D A  + +++
Sbjct: 378 EKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDM 411


>AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:24737719-24739353 FORWARD
           LENGTH=544
          Length = 544

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 146/294 (49%), Gaps = 1/294 (0%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           +T   +++ LC  G+L + + LLDR+  K   P+V   + L+    +E  ++E+M LL  
Sbjct: 235 ITIRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKR 294

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           ++ +    + + Y++++    KEG    A ++F ++  +GFS +   Y + +R  C +G 
Sbjct: 295 LLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGD 354

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            +EA  LL+EM+E  +SP   T+N LI   +  G  E+  E  + M   G   + +++N 
Sbjct: 355 VKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNE 414

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQ 408
           ++  + K   V+   + L + I + + P+E TY + I    E   + +A  +F  +  ++
Sbjct: 415 MVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRK 474

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
             P  +  +++I  LC  G      + L  M K    P++  Y +L++   + G
Sbjct: 475 MSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIG 528



 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 1/360 (0%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           + ++ LV+       L     +  RL   G   +V T + L+  + K +  D   ++ + 
Sbjct: 165 LVFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYEC 224

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
            I +   PN ++  +++  LCKEGR ++ ++L   +  K   PSV+    L+  +  E R
Sbjct: 225 AIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMR 284

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            EE+  LL  +  +++    + Y+I++ + +  G    A +V DEM + GF+  +  Y  
Sbjct: 285 IEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTV 344

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
            +   C++G V    + L +M     SP + T+N  I      G  ++     + +  + 
Sbjct: 345 FVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRG 404

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P       ++  + +  N   A ++L +    GF PD +TYS L+RG      +D+AL
Sbjct: 405 LMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQAL 464

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           ++F  +E     P  + + +LI+G C   + +   +  + M  +   PN   Y  L++  
Sbjct: 465 KLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAF 524



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 163/401 (40%), Gaps = 50/401 (12%)

Query: 163 HGFQTGTVTYNTLVKG---LCSHGKLNQSL-----------QLLDRLTKKGLKPNVFTYS 208
           HG ++  +T + LVK    + +   +  SL            LLD        P VF   
Sbjct: 111 HGIKSYALTIHILVKARLLIDARALIESSLLNSPPDSDLVDSLLDTYEISSSTPLVF--D 168

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
            L++   K R ++    +   +   G   ++++ N L+    K    +    ++     K
Sbjct: 169 LLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDK 228

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
              P+ ++  I+++ LC EGR +E   LL  +  +   PSV+    L+  +    R E++
Sbjct: 229 RIYPNEITIRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEES 288

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
             +L  +      V    Y+ ++    KEG +    +  D+M+ R +S N   Y     +
Sbjct: 289 MSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRV 348

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C                                  C KG+   A ++L EM + G +P  
Sbjct: 349 C----------------------------------CEKGDVKEAERLLSEMEESGVSPYD 374

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
            T++ L+ G  R G  ++ LE   ++     MP    +N ++    K +  + + EI  +
Sbjct: 375 ETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTK 434

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            ++KG VP+E TY+ L+ G    N++D A  L  E+  R++
Sbjct: 435 SIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKM 475



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 144/336 (42%), Gaps = 13/336 (3%)

Query: 75  SKEVRLNDAFLHL-EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           S + +++D    + E  + K   P+      ++  LCK  + ++ V +++ I G   +P 
Sbjct: 209 SSKSKIDDLVWRIYECAIDKRIYPNEITIRIMIQVLCKEGRLKEVVDLLDRICGKRCLPS 268

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
               T LV  +     I  +M L++++        T+ Y+ +V      G L  + ++ D
Sbjct: 269 VIVNTSLVFRVLEEMRIEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFD 328

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            + ++G   N F Y+  +    ++  V EA +LL ++   G  P   ++N L+ G  + G
Sbjct: 329 EMLQRGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFG 388

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             E  +E    +  +G  PS  ++N +++S+        AN +L +  ++   P   TY+
Sbjct: 389 WEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYS 448

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            LI         +QA ++  EM     +     +  +I  LC  GKV+   + L  M  R
Sbjct: 449 HLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKR 508

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQN 409
              PN   Y+A+               FQ +G+K N
Sbjct: 509 LIEPNADIYDALIK------------AFQKIGDKTN 532



 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 136/299 (45%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           KE RL +    L+ + GK   P V   T L++ + +  +  +++ +++ ++   ++ D  
Sbjct: 246 KEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLLMKNMVVDTI 305

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y+ +V    + G++  A ++ +++ + GF   +  Y   V+  C  G + ++ +LL  +
Sbjct: 306 GYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVKEAERLLSEM 365

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            + G+ P   T++ L+ G  +    ++ ++  + ++ RG  P+  ++N ++  + K    
Sbjct: 366 EESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENV 425

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             A E+      KGF P   +Y+ L+R        ++A  L  EM+   +SP    +  L
Sbjct: 426 NRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSL 485

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           I  L   G+ E   + L  M +      A  Y+ +I    K G      +  ++MI  R
Sbjct: 486 IVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIGDKTNADRVYNEMISVR 544


>AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3639908-3643974 FORWARD
           LENGTH=664
          Length = 664

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 183/367 (49%), Gaps = 16/367 (4%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           +L D   S + +  +++ E +   G I   + Y+  + F+  + N+  A+++ + + +  
Sbjct: 104 ILRDFGISGRWQDLIQLFEWMQQHGKI-SVSTYSSCIKFVGAK-NVSKALEIYQSIPDES 161

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK-ERGVDEA 223
            +      N+++  L  +GKL+  ++L D++ + GLKP+V TY+ LL G  K + G  +A
Sbjct: 162 TKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKA 221

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           ++L+ ++   G + + V Y  +L      GR+E+A    + +  +G SP++  Y+ LL S
Sbjct: 222 IELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNS 281

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
             ++G +++A+ L+ EM    L P+ V    L+      G  +++ E+L E+  +G+   
Sbjct: 282 YSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAEN 341

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA--IAMLCEQGKVQEAFFIF 401
              Y  ++  L K GK++      D M  +    ++G  N+  I+ LC   + +EA  + 
Sbjct: 342 EMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVR-SDGYANSIMISALCRSKRFKEAKEL- 399

Query: 402 QSLGNKQNCPMHDYCKNVI--SML---CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
               ++ +   ++ C  V+  +ML   CR G      +M+ +M +   +PD  T+  L++
Sbjct: 400 ----SRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIK 455

Query: 457 GMCREGM 463
              +E +
Sbjct: 456 YFIKEKL 462



 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 142/292 (48%), Gaps = 3/292 (1%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY--A 153
           K +V     +L  L K+ K    +++ + +   G+ PD   Y  L+    +  N GY  A
Sbjct: 163 KINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKN-GYPKA 221

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           ++L+ ++  +G Q  +V Y T++    S+G+  ++   + ++  +G  PN++ YS LL  
Sbjct: 222 IELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNS 281

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              +    +A +L+ ++ + G  PN V    LL    K G  + + EL  +L + G++ +
Sbjct: 282 YSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAEN 341

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            + Y +L+  L   G+ EEA  +  +M  + +       +I+I++L    R ++A E+  
Sbjct: 342 EMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSR 401

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           +   +         N ++   C+ G+++ V++ + +M  +  SP+  T++ +
Sbjct: 402 DSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHIL 453



 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 1/283 (0%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCK-SNKARKAVRVMEMIVGSGIIPDA 134
           K  +L+      + M   G KPDV     LL    K  N   KA+ ++  +  +GI  D+
Sbjct: 178 KNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGIQMDS 237

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  ++      G    A   +++++  G       Y++L+      G   ++ +L+  
Sbjct: 238 VMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTE 297

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +   GL PN    + LL+   K    D + +LL ++ + G   N + Y +L+ GL K G+
Sbjct: 298 MKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGK 357

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            E+A  +F D+  KG      + +I++ +LC   R++EA  L  + +       +V  N 
Sbjct: 358 LEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNT 417

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
           ++ +    G  E    ++ +M     +    +++ +I    KE
Sbjct: 418 MLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKE 460



 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 111/272 (40%), Gaps = 35/272 (12%)

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A+E+++ +P +    +V   N +L  L   G+ +    L  +M  + L P VVTYN L+ 
Sbjct: 150 ALEIYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLA 209

Query: 318 S-LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             + +     +A E++ E+  +G  + +  Y  ++A     G+ +     + QM    +S
Sbjct: 210 GCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHS 269

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           PN                    + + SL N  +                KG+   A +++
Sbjct: 270 PN-------------------IYHYSSLLNSYSW---------------KGDYKKADELM 295

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            EM   G  P+    ++L++   + G+ D + E+   LE   Y  +   Y  L+ G  K 
Sbjct: 296 TEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKA 355

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            + + +  IF  M  KG   +    +I++  L
Sbjct: 356 GKLEEARSIFDDMKGKGVRSDGYANSIMISAL 387



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 10/283 (3%)

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           V   N++LR     GRW++   L   M +     SV TY+  I  +       +A E+  
Sbjct: 98  VQDLNVILRDFGISGRWQDLIQLFEWMQQHG-KISVSTYSSCIKFVGAKN-VSKALEIYQ 155

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            +      +     N I++ L K GK+D  ++  DQM      P+  TYN +   C + K
Sbjct: 156 SIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVK 215

Query: 394 --VQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
               +A  +   L   G + +  M+     V+++    G +  A   + +M   G +P+ 
Sbjct: 216 NGYPKAIELIGELPHNGIQMDSVMYG---TVLAICASNGRSEEAENFIQQMKVEGHSPNI 272

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
           Y YSSL+     +G   +A E+   ++    +P+      L+  + K    D S E+   
Sbjct: 273 YHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSE 332

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLS 551
           + + G   NE+ Y +L++GL+   +L+ A  +  ++  + V S
Sbjct: 333 LESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRS 375


>AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27598106-27599812 FORWARD
           LENGTH=568
          Length = 568

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 10/294 (3%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPD      L +  C+    +KA++++E ++ +G  P+   Y   ++  C+ G +  A  
Sbjct: 265 KPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAAD 324

Query: 156 LVEKVEEHGFQTGTVTYNT---LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           L + +   G      T  T   ++  L  + K  +  +L+ R+   G  P+V TY  ++E
Sbjct: 325 LFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIE 384

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G      VDEA K LD++  +G  P++V+YN  L  LC+  +T++A++L+  +     +P
Sbjct: 385 GMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAP 444

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           SV +YN+L+         + A     EMD+ D    V TY  +I  L    R ++A  +L
Sbjct: 445 SVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLL 504

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM-------ICRRYSPNE 379
           +E+   G  +    ++  + RL + G +  + +  + M       + RR++ +E
Sbjct: 505 EEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSE 558



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 127/252 (50%), Gaps = 8/252 (3%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
            +N L+  LC  G + +   LL R+  + +KP+  T++ L  G  + R   +AMKLL+++
Sbjct: 236 AFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDANTFNVLFFGWCRVRDPKKAMKLLEEM 294

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS---PSVVSYNILLRSLCYE 287
           I  G +P   +Y   +   C+ G  ++A +LF  +  KG +   P+  ++ +++ +L   
Sbjct: 295 IEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKN 354

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
            + EE   L+  M      P V TY  +I  + +  + ++A++ LDEM+  G+     +Y
Sbjct: 355 DKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTY 414

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGN 406
           N  +  LC+  K D  ++   +M+  R +P+  TYN  I+M  E      AF  +  + +
Sbjct: 415 NCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEM-D 473

Query: 407 KQNC--PMHDYC 416
           K++C   +  YC
Sbjct: 474 KRDCVQDVETYC 485



 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 5/261 (1%)

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P + ++N+LL +LC  G  +E   LL  M    + P   T+N+L          ++A ++
Sbjct: 232 PEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDANTFNVLFFGWCRVRDPKKAMKL 290

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM---- 387
           L+EM  +G      +Y   I   C+ G VD      D MI +  + +  T    A+    
Sbjct: 291 LEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVA 350

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
           L +  K +E F +   + +    P     K+VI  +C       A++ L EM+  G+ PD
Sbjct: 351 LAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPD 410

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             TY+  +R +C     DEAL+++  + E+   P +  YN LI  F +    D +   + 
Sbjct: 411 IVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWT 470

Query: 508 RMVNKGCVPNEITYTILVEGL 528
            M  + CV +  TY  ++ GL
Sbjct: 471 EMDKRDCVQDVETYCAMINGL 491



 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 5/280 (1%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   +  L++ LC+ G +     L+ ++  H  +    T+N L  G C      ++++L
Sbjct: 232 PEINAFNMLLDALCKCGLVKEGEALLRRMR-HRVKPDANTFNVLFFGWCRVRDPKKAMKL 290

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG---GEPNLVSYNVLLTG 248
           L+ + + G KP  FTY   ++   +   VDEA  L D +I +G     P   ++ +++  
Sbjct: 291 LEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVA 350

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           L K  + E+  EL   + + G  P V +Y  ++  +C   + +EA   L EM  +   P 
Sbjct: 351 LAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPD 410

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
           +VTYN  +  L  + +T++A ++   M  S    +  +YN +I+   +    D       
Sbjct: 411 IVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWT 470

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNK 407
           +M  R    +  TY A I  L +  + +EA F+ + + NK
Sbjct: 471 EMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNK 510



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 15/364 (4%)

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ----LLDRLTKKGLKPNVFTYSFLLE--GA 214
           +EH +    + YN ++  L S    N+  +    +LD + +      V     LLE    
Sbjct: 152 QEH-YSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNN--KTVVLVDVLLEILRK 208

Query: 215 YKERGVDEAMKLLDDIIAR-GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
           Y ER +    K       R   +P + ++N+LL  LCK G  ++   L R +  +   P 
Sbjct: 209 YCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPD 267

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
             ++N+L    C     ++A  LL EM E    P   TY   I +    G  ++A ++ D
Sbjct: 268 ANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFD 327

Query: 334 EMTRSGFNV---TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLC 389
            M   G  V   TA ++  +I  L K  K +   + + +MI     P+  TY + I  +C
Sbjct: 328 FMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMC 387

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
              KV EA+     + NK   P        + +LC    T  A ++   M +    P   
Sbjct: 388 MAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQ 447

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY+ L+         D A   +  +++ D + D++ Y A+I G     R   +  + + +
Sbjct: 448 TYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEV 507

Query: 510 VNKG 513
           VNKG
Sbjct: 508 VNKG 511



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 6/180 (3%)

Query: 55  SPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNK 114
           +P    F L    + KND      +  + F  +  M+  G  PDV+    ++  +C + K
Sbjct: 338 APTAKTFALMIVALAKND------KAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEK 391

Query: 115 ARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
             +A + ++ +   G  PD   Y   +  LC       A++L  ++ E        TYN 
Sbjct: 392 VDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNM 451

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L+         + +      + K+    +V TY  ++ G +      EA  LL++++ +G
Sbjct: 452 LISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKG 511


>AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4227975-4229630 REVERSE
           LENGTH=551
          Length = 551

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 153 AMQLVEKVEEH-GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           AM+  +++ E  G     VTYNT++K LC  G ++  L + + L K G +P++ +++ LL
Sbjct: 176 AMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLL 235

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           E  Y+     E  ++ D + ++   PN+ SYN  + GL +  +  DA+ L   +  +G S
Sbjct: 236 EEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGIS 295

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P V +YN L+ +   +   EE      EM E+ L+P  VTY +LI  L   G  ++A EV
Sbjct: 296 PDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEV 355

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
            +E  +         Y P++ RL   GK+D   Q +
Sbjct: 356 SEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLV 391



 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 127/252 (50%), Gaps = 2/252 (0%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFT 206
           G   +A +L +++ E   +    ++N L+    +  KL+++++    L +K G+ P++ T
Sbjct: 136 GMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVT 195

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ +++   ++  +D+ + + +++   G EP+L+S+N LL    +     +   ++  + 
Sbjct: 196 YNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMK 255

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
           +K  SP++ SYN  +R L    ++ +A  L+  M  E +SP V TYN LIT+  +    E
Sbjct: 256 SKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLE 315

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
           +  +  +EM   G      +Y  +I  LCK+G +D  V+  ++ I  +       Y  + 
Sbjct: 316 EVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVV 375

Query: 387 -MLCEQGKVQEA 397
             L   GK+ EA
Sbjct: 376 ERLMGAGKIDEA 387



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 140/339 (41%), Gaps = 50/339 (14%)

Query: 211 LEGAYKERGVDEAM---KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           L  A K   +DE +   K  DDI +     + V   +LL G    G  E A +LF ++P 
Sbjct: 97  LREAKKFSTIDEVLQYQKKFDDIKSE----DFVIRIMLLYGYS--GMAEHAHKLFDEMPE 150

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTE 326
                +V S+N LL +     + +EA     E+ E+  ++P +VTYN +I +L   G  +
Sbjct: 151 LNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMD 210

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ---CLDQMICRRYSPNEGTYN 383
               + +E+ ++GF     S+N ++    +    +L V+     D M  +  SPN  +YN
Sbjct: 211 DILSIFEELEKNGFEPDLISFNTLLEEFYRR---ELFVEGDRIWDLMKSKNLSPNIRSYN 267

Query: 384 AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
           +                                   +  L R      A  ++  M   G
Sbjct: 268 S----------------------------------RVRGLTRNKKFTDALNLIDVMKTEG 293

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
            +PD +TY++L+     +  L+E ++ +  ++E    PD   Y  LI   CK    D ++
Sbjct: 294 ISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAV 353

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           E+ +  +    +     Y  +VE L    ++D A  L+K
Sbjct: 354 EVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVK 392



 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 2/232 (0%)

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGT 381
           G  E A ++ DEM       T  S+N +++      K+D  ++   ++  +   +P+  T
Sbjct: 136 GMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVT 195

Query: 382 YNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
           YN  I  LC +G + +   IF+ L      P       ++    R+       ++   M 
Sbjct: 196 YNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMK 255

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
               +P+  +Y+S VRG+ R     +AL +  +++     PD+  YNALI  +      +
Sbjct: 256 SKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLE 315

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
             ++ +  M  KG  P+ +TY +L+  L  + +LD A  + +E    ++LSR
Sbjct: 316 EVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSR 367



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 95/204 (46%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  PD+     ++  LC+       + + E +  +G  PD   +  L+    RR      
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++ + ++         +YN+ V+GL  + K   +L L+D +  +G+ P+V TY+ L+  
Sbjct: 248 DRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITA 307

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              +  ++E MK  +++  +G  P+ V+Y +L+  LCK+G  + A+E+  +         
Sbjct: 308 YRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSR 367

Query: 274 VVSYNILLRSLCYEGRWEEANGLL 297
              Y  ++  L   G+ +EA  L+
Sbjct: 368 PNMYKPVVERLMGAGKIDEATQLV 391



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 4/187 (2%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           ++D     E +   G +PD+     LL +  +     +  R+ +++    + P+   Y  
Sbjct: 209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNS 268

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
            V  L R      A+ L++ ++  G      TYN L+        L + ++  + + +KG
Sbjct: 269 RVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG 328

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG--GEPNLVSYNVLLTGLCKEGRTED 257
           L P+  TY  L+    K+  +D A+++ ++ I       PN+  Y  ++  L   G+ ++
Sbjct: 329 LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNM--YKPVVERLMGAGKIDE 386

Query: 258 AIELFRD 264
           A +L ++
Sbjct: 387 ATQLVKN 393



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 55/114 (48%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           +  DA   ++ M  +G  PDV     L+      N   + ++    +   G+ PD   Y 
Sbjct: 278 KFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYC 337

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
            L+  LC++G++  A+++ E+  +H   +    Y  +V+ L   GK++++ QL+
Sbjct: 338 MLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLV 391


>AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:20459238-20461504 FORWARD
           LENGTH=723
          Length = 723

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 171/390 (43%), Gaps = 15/390 (3%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM-QLVEKVEEHGFQT 167
           L  S +   A  V E +    + PD      L+  L + G     + ++ EK+ E G + 
Sbjct: 283 LSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKW 342

Query: 168 GTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
               +  LVK  C  G   ++L +   + KKG++ N   Y+ L++   K   ++E   L 
Sbjct: 343 SQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLF 402

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
            ++  +G +P+  +YN+L+    +  + +    L R++   G  P+V SY  L+ +    
Sbjct: 403 TEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAY--- 459

Query: 288 GRWEEANGLLAE----MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           GR ++ + + A+    M +  L PS  +Y  LI + S+ G  E+A+   +EM + G   +
Sbjct: 460 GRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPS 519

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI-- 400
             +Y  ++    + G    +++    M+  +      TYN  +    +QG   EA  +  
Sbjct: 520 VETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVS 579

Query: 401 -FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
            F  +G + +   ++   N  +   R G      Q+L EM      PDS TYS+++    
Sbjct: 580 EFSKMGLQPSVMTYNMLMNAYA---RGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFV 636

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNAL 489
           R      A    +++ ++  +PD  +Y  L
Sbjct: 637 RVRDFKRAFFYHKMMVKSGQVPDPRSYEKL 666



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 157/357 (43%), Gaps = 3/357 (0%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE-RGVDEAMKLLDDI 230
           YN  + GL +  + + + ++ + + K  + P+  T + L+    K  R   E  ++ + +
Sbjct: 276 YNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKM 335

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
             +G + +   +  L+   C EG  E+A+ +  ++  KG   + + YN L+ +       
Sbjct: 336 SEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHI 395

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           EE  GL  EM ++ L PS  TYNIL+ + +   + +    +L EM   G      SY  +
Sbjct: 396 EEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCL 455

Query: 351 IARLCKEGKV-DLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ 408
           I+   +  K+ D+      +M      P+  +Y A I      G  ++A+  F+ +  + 
Sbjct: 456 ISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEG 515

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
             P  +   +V+    R G+T    ++   M +        TY++L+ G  ++G+  EA 
Sbjct: 516 IKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEAR 575

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           ++     +    P +  YN L+  + +  +     ++ + M      P+ ITY+ ++
Sbjct: 576 DVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMI 632



 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 157/362 (43%), Gaps = 9/362 (2%)

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           L LL  L  K    +V  Y+  + G    +  D+A ++ + +      P+ V+  +L+T 
Sbjct: 258 LLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITT 317

Query: 249 LCKEGRT-EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           L K GR+ ++  E+F  +  KG   S   +  L++S C EG  EEA  +  EM+++ +  
Sbjct: 318 LRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRS 377

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           + + YN L+ + +     E+   +  EM   G   +A +YN ++    +  + D+V   L
Sbjct: 378 NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLL 437

Query: 368 DQMICRRYSPNEGTYNAIAMLCEQGK-----VQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            +M      PN  +Y  +     + K       +AF   + +G K +   H Y   +I  
Sbjct: 438 REMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSS--HSYTA-LIHA 494

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
               G    A+    EM K G  P   TY+S++    R G   + +EI++++        
Sbjct: 495 YSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGT 554

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
              YN L+ GF K      + ++       G  P+ +TY +L+   A   +      L+K
Sbjct: 555 RITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLK 614

Query: 543 EL 544
           E+
Sbjct: 615 EM 616



 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 122/272 (44%), Gaps = 1/272 (0%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  KG KP  A    L+    +  +      ++  +   G+ P+   YT L++   R   
Sbjct: 405 MRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKK 464

Query: 150 IG-YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS 208
           +   A     ++++ G +  + +Y  L+      G   ++    + + K+G+KP+V TY+
Sbjct: 465 MSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYT 524

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
            +L+   +     + M++   ++    +   ++YN LL G  K+G   +A ++  +    
Sbjct: 525 SVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM 584

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G  PSV++YN+L+ +    G+  +   LL EM   +L P  +TY+ +I +       ++A
Sbjct: 585 GLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRA 644

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           F     M +SG      SY  + A L  + K 
Sbjct: 645 FFYHKMMVKSGQVPDPRSYEKLRAILEDKAKT 676



 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 140/335 (41%), Gaps = 41/335 (12%)

Query: 236 EPNLVSY---NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
           EP+L S    +VL T L +E   +  + L  +LP K     V  YN  +  L    R+++
Sbjct: 232 EPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDD 291

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT-EQAFEVLDEMTRSGFNVTATSYNPII 351
           A  +   MD+ ++ P  VT  ILIT+L   GR+ ++ +E+ ++M+  G   +   +  ++
Sbjct: 292 AWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLV 351

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNC 410
              C EG  +  +    +M  +    N   YN +     +   ++E   +F  + +K   
Sbjct: 352 KSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLK 411

Query: 411 P--------MHDYCK----NVISMLCRK--------------------GNTYPAFQM--- 435
           P        M  Y +    +++  L R+                    G T     M   
Sbjct: 412 PSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAAD 471

Query: 436 -LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
               M K G  P S++Y++L+      G  ++A   F  + +    P ++ Y +++  F 
Sbjct: 472 AFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFR 531

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +   T   +EI++ M+ +      ITY  L++G A
Sbjct: 532 RSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFA 566



 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
           L +E   D ++  L  +  +    +   YNA I+ L    +  +A+ +++++      P 
Sbjct: 248 LGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPD 307

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYE-MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
           +  C  +I+ L + G +      ++E M++ G       +  LV+  C EG+ +EAL I 
Sbjct: 308 NVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQ 367

Query: 472 RILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
             +E+     +   YN L+  + K    +    +F  M +KG  P+  TY IL++  A  
Sbjct: 368 TEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARR 427

Query: 532 NELDIAAGLMKEL 544
            + DI   L++E+
Sbjct: 428 MQPDIVETLLREM 440



 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           A+   E M  +G KP V   T +L    +S    K + + ++++   I      Y  L++
Sbjct: 504 AYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLD 563

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
              ++G    A  +V +  + G Q   +TYN L+      G+  +  QLL  +    LKP
Sbjct: 564 GFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKP 623

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
           +  TYS ++    + R    A      ++  G  P+  SY  L   L  + +T++
Sbjct: 624 DSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKN 678


>AT5G18390.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:6090954-6092333 FORWARD
           LENGTH=459
          Length = 459

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 2/341 (0%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P +  Y  L   L          ++++++++        T   +++    +G ++Q+++L
Sbjct: 109 PTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVEL 168

Query: 192 LDRLTKK-GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC 250
            + + K  G +  V  Y+ LL      +    A  L+  +I +G +P+  +Y +L+ G C
Sbjct: 169 FNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWC 228

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
             G+ ++A E   ++  +GF+P     ++L+  L   G  E A  ++++M +    P + 
Sbjct: 229 SAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQ 288

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T+NILI ++S  G  E   E+     + G  V   +Y  +I  + K GK+D   + L+  
Sbjct: 289 TFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNC 348

Query: 371 ICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           +   + P    Y  I   +C  G   +AF  F  +  K + P       +I+M  R G  
Sbjct: 349 VEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKF 408

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
             A   L EMT+ G  P S  +  +  G+   G  D A+ I
Sbjct: 409 VDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAMRI 449



 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 144/341 (42%), Gaps = 2/341 (0%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           ++ Y  L K L SH K     ++L ++    L  +  T  F++E   K   VD+A++L +
Sbjct: 111 SMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFN 170

Query: 229 DIIAR-GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
            +    G +  +  YN LL  LC       A  L R +  KG  P   +Y IL+   C  
Sbjct: 171 GVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSA 230

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           G+ +EA   L EM     +P     ++LI  L   G  E A E++ +MT+ GF     ++
Sbjct: 231 GKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTF 290

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGN 406
           N +I  + K G+V+  ++            +  TY   I  + + GK+ EAF +  +   
Sbjct: 291 NILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVE 350

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
             + P       +I  +CR G    AF    +M      P+   Y+ L+    R G   +
Sbjct: 351 DGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVD 410

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
           A      + E   +P    ++ +  G     + DL++ I Q
Sbjct: 411 AANYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAMRIEQ 451



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 69  GKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGS 128
           GKN    + V L   F  +   +G  Q  DV  +  LL+ LC       A  ++  ++  
Sbjct: 157 GKNGHVDQAVEL---FNGVPKTLGCQQTVDVYNS--LLHALCDVKMFHGAYALIRRMIRK 211

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+ PD   Y  LVN  C  G +  A + ++++   GF       + L++GL + G L  +
Sbjct: 212 GLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESA 271

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
            +++ ++TK G  P++ T++ L+E   K   V+  +++       G   ++ +Y  L+  
Sbjct: 272 KEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPA 331

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           + K G+ ++A  L  +    G  P    Y  +++ +C  G +++A    ++M  +   P+
Sbjct: 332 VSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPN 391

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
              Y +LIT     G+   A   L EMT  G    +  ++ +   L   GK DL ++
Sbjct: 392 RPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAMR 448



 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 117/252 (46%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
            + A+  +  M+ KG KPD      L+   C + K ++A   ++ +   G  P A     
Sbjct: 198 FHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDL 257

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+  L   G +  A ++V K+ + GF     T+N L++ +   G++   +++     K G
Sbjct: 258 LIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLG 317

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L  ++ TY  L+    K   +DEA +LL++ +  G +P    Y  ++ G+C+ G  +DA 
Sbjct: 318 LCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAF 377

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
             F D+  K   P+   Y +L+      G++ +A   L EM E  L P    ++++   L
Sbjct: 378 SFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGL 437

Query: 320 SLHGRTEQAFEV 331
              G+ + A  +
Sbjct: 438 KNGGKHDLAMRI 449



 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 35/276 (12%)

Query: 251 KEGRTEDAIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
           K G  + A+ELF  +P   G   +V  YN LL +LC    +  A  L+  M  + L P  
Sbjct: 158 KNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDK 217

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
            TY IL+      G+ ++A E LDEM+R GFN  A   + +I  L   G ++   + + +
Sbjct: 218 RTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSK 277

Query: 370 MICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           M    + P+  T+N +                                  I  + + G  
Sbjct: 278 MTKGGFVPDIQTFNIL----------------------------------IEAISKSGEV 303

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
               +M Y   K G   D  TY +L+  + + G +DEA  +     E+ + P    Y  +
Sbjct: 304 EFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPI 363

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           I G C+    D +   F  M  K   PN   YT+L+
Sbjct: 364 IKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLI 399



 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 7/298 (2%)

Query: 255 TEDAIELF---RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           + D++  F   R  P+  ++P+ + Y  L +SL    ++E    +L +M +  L  S  T
Sbjct: 91  SNDSLRFFNWARSNPS--YTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGET 148

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
              +I     +G  +QA E+ + + ++ G   T   YN ++  LC           + +M
Sbjct: 149 LCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRM 208

Query: 371 ICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
           I +   P++ TY  +    C  GK++EA      +  +   P       +I  L   G  
Sbjct: 209 IRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYL 268

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL 489
             A +M+ +MTK GF PD  T++ L+  + + G ++  +E++    +     DID Y  L
Sbjct: 269 ESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTL 328

Query: 490 ILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           I    K  + D +  +    V  G  P    Y  +++G+      D A     ++ ++
Sbjct: 329 IPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVK 386


>AT1G71210.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:26838850-26841489 REVERSE
           LENGTH=879
          Length = 879

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/491 (21%), Positives = 201/491 (40%), Gaps = 65/491 (13%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+   CK  K  +A   +  ++ +      +    LV+ LC +     A +L+++++  G
Sbjct: 257 LVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATKLLDEIKLVG 316

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK-KGLKPNVFTYSFLLEGAYKERGVDEA 223
                  YN  ++ L   G LN     L +++  +G +  VF Y+ ++    KE  +D  
Sbjct: 317 TVNMDRAYNIWIRALIKAGFLNNPADFLQKISPLEGCELEVFRYNSMVFQLLKENNLDGV 376

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
             +L +++ RG  PN  + N  L   CK G  ++A+EL+R     GF+P+ +SYN L+ +
Sbjct: 377 YDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLIHT 436

Query: 284 -----------------------------------LCYEGRWEEANGLLAEMDEEDLSPS 308
                                              LC++G+ + A  L+    E DL P 
Sbjct: 437 LCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLLPK 496

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
            +    +I++L   G+ E A  + +   +SG + +   +  +I       + D+  + + 
Sbjct: 497 RIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKLII 556

Query: 369 QMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
           +M  + Y+P    Y N I  +CE    ++ FF                 K  +S+   K 
Sbjct: 557 RMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFT-------------TLLKFQLSLWEHKV 603

Query: 428 NTYPAF-------------QMLYEMT-KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
             Y  F             +++Y+M  + G TP   +   +++   +   + +AL  F  
Sbjct: 604 QAYNLFIEGAGFAGKPKLARLVYDMMDRDGITPTVASNILMLQSYLKNEKIADALHFFHD 663

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           L E         Y  +I+G CK  + D ++   + M  +G  P+   Y + ++ L  E +
Sbjct: 664 LREQGKTKK-RLYQVMIVGLCKANKLDDAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEK 722

Query: 534 LDIAAGLMKEL 544
            D A GL+ E 
Sbjct: 723 YDEAVGLVNEF 733



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 161/371 (43%), Gaps = 3/371 (0%)

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           + LV G    G+ + +LQ    +  +GL  + F Y  LL    +E+  D    + D I  
Sbjct: 186 DALVVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEEKCFDSFDVIFDQISV 245

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
           RG     V++++L+   CK+G+ ++A +  R L     +       IL+ +LC + +++E
Sbjct: 246 RGF-VCAVTHSILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQE 304

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR-SGFNVTATSYNPII 351
           A  LL E+           YNI I +L   G      + L +++   G  +    YN ++
Sbjct: 305 ATKLLDEIKLVGTVNMDRAYNIWIRALIKAGFLNNPADFLQKISPLEGCELEVFRYNSMV 364

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNC 410
            +L KE  +D V   L +M+ R  SPN+ T N A+   C+ G V EA  +++S       
Sbjct: 365 FQLLKENNLDGVYDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFA 424

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
           P       +I  LC   +   A+ +L      G      T+S+L   +C +G  D A E+
Sbjct: 425 PTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMAREL 484

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
                E D +P       +I   C   + + ++ I +     G   +   +T L+ G   
Sbjct: 485 VIAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLIYGSIT 544

Query: 531 ENELDIAAGLM 541
               DIAA L+
Sbjct: 545 LMRGDIAAKLI 555



 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 118/538 (21%), Positives = 218/538 (40%), Gaps = 74/538 (13%)

Query: 31  VLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDAFLHLEYM 90
           +L  R  SL+    R   S     +   S FT P+  +   D   +E +  D F H    
Sbjct: 17  LLRRRILSLSASSFRNFTSGNNGDAIPFSTFTKPSSSIAPGDFLVREWK--DWFKH---- 70

Query: 91  VGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI-VGSGIIPDAACYTHLVNFLCR--- 146
                  DV Q+ QL+             R+ +++   S    D A Y HL N   R   
Sbjct: 71  ------RDVKQSHQLI------------DRIFDILRAPSNDGDDRAFYLHLSNLRLRLTE 112

Query: 147 ----------RGNIGYAMQLVE-KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR- 194
                     R +I   ++  +    + GF     T++ + K L     +   +  LDR 
Sbjct: 113 KFVLDVLSHTRYDILCCLKFFDWAARQPGFHHTRATFHAIFKILRGAKLVTLMIDFLDRS 172

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +  +  + ++     L+ G       D A++   ++  RG + +   Y+VLL  L +E  
Sbjct: 173 VGFESCRHSLRLCDALVVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEEKC 232

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            +    +F  +  +GF    V+++IL++  C +G+ +EA   L  +   D +       I
Sbjct: 233 FDSFDVIFDQISVRGFV-CAVTHSILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGI 291

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           L+ +L    + ++A ++LDE+   G      +YN  I  L K G ++     L ++    
Sbjct: 292 LVDALCSKRKFQEATKLLDEIKLVGTVNMDRAYNIWIRALIKAGFLNNPADFLQKI---- 347

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
            SP EG        CE    +    +FQ                    L ++ N    + 
Sbjct: 348 -SPLEG--------CELEVFRYNSMVFQ--------------------LLKENNLDGVYD 378

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L EM   G +P+  T ++ +   C+ G +DEALE++R   E  + P   +YN LI   C
Sbjct: 379 ILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLIHTLC 438

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSR 552
             +  + + ++ +  +++G      T++ L   L ++ + D+A  L+     R++L +
Sbjct: 439 ANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLLPK 496



 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 165/415 (39%), Gaps = 10/415 (2%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+  D+  Y  L+N L           + +++   GF    VT++ LVK  C  GKL+++
Sbjct: 212 GLDLDSFGYHVLLNALVEEKCFDSFDVIFDQISVRGF-VCAVTHSILVKKFCKQGKLDEA 270

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
              L  L              L++    +R   EA KLLD+I   G      +YN+ +  
Sbjct: 271 EDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATKLLDEIKLVGTVNMDRAYNIWIRA 330

Query: 249 LCKEGRTEDAIELFRDL-PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
           L K G   +  +  + + P +G    V  YN ++  L  E   +    +L EM    +SP
Sbjct: 331 LIKAGFLNNPADFLQKISPLEGCELEVFRYNSMVFQLLKENNLDGVYDILTEMMVRGVSP 390

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           +  T N  +      G  ++A E+    +  GF  TA SYN +I  LC    V+     L
Sbjct: 391 NKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAPTAMSYNYLIHTLCANESVEQAYDVL 450

Query: 368 DQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
              I R +     T++ +   LC +GK   A  +  +   +   P       +IS LC  
Sbjct: 451 KGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLLPKRIAGCKIISALCDV 510

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
           G    A  +     K G       ++SL+ G       D A ++   ++E  Y P    Y
Sbjct: 511 GKVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLY 570

Query: 487 NALILGFCKYQRTD----LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
             +I   C+ +  +     ++  FQ  + +  V     Y + +EG  F  +  +A
Sbjct: 571 RNVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQ---AYNLFIEGAGFAGKPKLA 622



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 148/341 (43%), Gaps = 18/341 (5%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           ++ DA +  E     G        T L+Y      +   A +++  +   G  P  + Y 
Sbjct: 512 KVEDALMINELFNKSGVDTSFKMFTSLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYR 571

Query: 139 HLVNFLCR--RGNIGYAMQLVE---KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
           +++  +C    G   +   L++    + EH  Q     YN  ++G    GK   +  + D
Sbjct: 572 NVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQA----YNLFIEGAGFAGKPKLARLVYD 627

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            + + G+ P V +   +L+   K   + +A+    D+  +G     + Y V++ GLCK  
Sbjct: 628 MMDRDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGKTKKRL-YQVMIVGLCKAN 686

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           + +DA+    ++  +G  PS+  Y + ++ LC E +++EA GL+ E  +     +    N
Sbjct: 687 KLDDAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKSGRRITAFIGN 746

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTA-TSYNPIIARLCKEGKVDLVVQC--LDQM 370
           +L+ +     +++  +E    M      +    S   +I      G++D+ V+   LD++
Sbjct: 747 VLLHNAM---KSKGVYEAWTRMRNIEDKIPEMKSLGELIGLF--SGRIDMEVELKRLDEV 801

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
           I + Y  +  TYN +  +    + ++A+ + + +  +   P
Sbjct: 802 IEKCYPLDMYTYNMLLRMIVMNQAEDAYEMVERIARRGYVP 842



 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/493 (21%), Positives = 198/493 (40%), Gaps = 49/493 (9%)

Query: 73  QKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP 132
           Q  KE  L+  +  L  M+ +G  P+       L   CK+    +A+ +       G  P
Sbjct: 366 QLLKENNLDGVYDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSEIGFAP 425

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
            A  Y +L++ LC   ++  A  +++   + G   G  T++TL   LC  GK + + +L+
Sbjct: 426 TAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELV 485

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
               ++ L P       ++        V++A+ + +     G + +   +  L+ G    
Sbjct: 486 IAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFTSLIYGSITL 545

Query: 253 GRTEDAIELFRDLPAKGFSPS------------------------------------VVS 276
            R + A +L   +  KG++P+                                    V +
Sbjct: 546 MRGDIAAKLIIRMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFTTLLKFQLSLWEHKVQA 605

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN+ +    + G+ + A  +   MD + ++P+V +  +++ S   + +   A     ++ 
Sbjct: 606 YNLFIEGAGFAGKPKLARLVYDMMDRDGITPTVASNILMLQSYLKNEKIADALHFFHDLR 665

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
             G       Y  +I  LCK  K+D  +  L++M      P+   Y   I  LC + K  
Sbjct: 666 EQG-KTKKRLYQVMIVGLCKANKLDDAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYD 724

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVI--SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           EA  +      K    +  +  NV+  + +  KG  Y A+  +  +      P+  +   
Sbjct: 725 EAVGLVNEF-RKSGRRITAFIGNVLLHNAMKSKG-VYEAWTRMRNIEDK--IPEMKSLGE 780

Query: 454 LVRGMCREGMLDEALEIFRILE--ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           L+ G+   G +D  +E+ R+ E  E  Y  D+  YN L+      Q  D + E+ +R+  
Sbjct: 781 LI-GLF-SGRIDMEVELKRLDEVIEKCYPLDMYTYNMLLRMIVMNQAED-AYEMVERIAR 837

Query: 512 KGCVPNEITYTIL 524
           +G VPNE T  IL
Sbjct: 838 RGYVPNERTDMIL 850



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 149/380 (39%), Gaps = 7/380 (1%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           +G + +V +   +++ L K N       ++  ++  G+ P+       + F C+ G +  
Sbjct: 351 EGCELEVFRYNSMVFQLLKENNLDGVYDILTEMMVRGVSPNKKTMNAALCFFCKAGFVDE 410

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A++L     E GF    ++YN L+  LC++  + Q+  +L     +G      T+S L  
Sbjct: 411 ALELYRSRSEIGFAPTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTN 470

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
               +   D A +L+     R   P  ++   +++ LC  G+ EDA+ +       G   
Sbjct: 471 ALCWKGKPDMARELVIAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDT 530

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY-NILITSLSLHGRTEQAFEV 331
           S   +  L+       R + A  L+  M E+  +P+   Y N++     +    +  F  
Sbjct: 531 SFKMFTSLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYRNVIQCVCEMESGEKNFFTT 590

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML--- 388
           L +   S +     +YN  I      GK  L     D M     +P   +   I ML   
Sbjct: 591 LLKFQLSLWEHKVQAYNLFIEGAGFAGKPKLARLVYDMMDRDGITPTVAS--NILMLQSY 648

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            +  K+ +A   F  L  +       Y + +I  LC+      A   L EM   G  P  
Sbjct: 649 LKNEKIADALHFFHDLREQGKTKKRLY-QVMIVGLCKANKLDDAMHFLEEMKGEGLQPSI 707

Query: 449 YTYSSLVRGMCREGMLDEAL 468
             Y   ++ +C E   DEA+
Sbjct: 708 ECYEVNIQKLCNEEKYDEAV 727


>AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=599
          Length = 599

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 183/437 (41%), Gaps = 21/437 (4%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           V   T+L+  L +  +  +A  V + +  +G  P    YT L+  +  +   G    +V 
Sbjct: 45  VRSRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVS 104

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           +VE+ G +  ++ +N ++      G +  ++Q L ++ + GL P   TY+ L++G     
Sbjct: 105 EVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAG 164

Query: 219 GVDEAMKLLDDIIARGG---EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
             + + +LLD ++  G     PN+ ++NVL+   CK+ + E+A E+ + +   G  P  V
Sbjct: 165 KPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTV 224

Query: 276 SYNILLRSLCYEGRWEEANGLLAE--MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           +YN +      +G    A   + E  + +E   P+  T  I++      GR       + 
Sbjct: 225 TYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVR 284

Query: 334 EMTRSGFNVTATSYNPII---ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
            M           +N +I     +     +D V   L  M     S NE     + ++  
Sbjct: 285 RMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVTLTLLLM-----SFNE----EVELVGN 335

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           Q    +   + +    K +   +    N  S     G    A Q+  EM K G  PD++ 
Sbjct: 336 QKMKVQVLTLMKECNVKADVITYSTVMNAWS---SAGYMEKAAQVFKEMVKAGVKPDAHA 392

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           YS L +G  R     +A E+   L   +  P++  +  +I G+C     D ++ +F +M 
Sbjct: 393 YSILAKGYVRAKEPKKAEELLETL-IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMC 451

Query: 511 NKGCVPNEITYTILVEG 527
             G  PN  T+  L+ G
Sbjct: 452 KFGVSPNIKTFETLMWG 468



 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/456 (20%), Positives = 192/456 (42%), Gaps = 67/456 (14%)

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T L+N L  RG    A  + + + E G +   ++Y TL+  +    +      ++  + +
Sbjct: 49  TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108

Query: 198 KGLKPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            G K +   ++ ++  A+ E G +++A++ L  +   G  P   +YN L+ G    G+ E
Sbjct: 109 SGTKLDSIFFNAVI-NAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPE 167

Query: 257 DAIELFRDLPAKG---FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
            + EL   +  +G     P++ ++N+L+++ C + + EEA  ++ +M+E  + P  VTYN
Sbjct: 168 RSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYN 227

Query: 314 ILITSLSLHGRTEQA-FEVLDEMT-RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
            + T     G T +A  EV+++M  +        +   ++   C+EG+V   ++ + +M 
Sbjct: 228 TIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMK 287

Query: 372 CRRYSPNEGTYNAI----AMLCEQGKVQEAFFIF---------QSLGNK----QNCPMHD 414
             R   N   +N++      + ++  + E              + +GN+    Q   +  
Sbjct: 288 EMRVEANLVVFNSLINGFVEVMDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQVLTLMK 347

Query: 415 YC---------KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS------------- 452
            C           V++     G    A Q+  EM K G  PD++ YS             
Sbjct: 348 ECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPK 407

Query: 453 ---------------------SLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
                                +++ G C  G +D+A+ +F  + +    P+I  +  L+ 
Sbjct: 408 KAEELLETLIVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMW 467

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           G+ + ++   + E+ Q M   G  P   T+ +L E 
Sbjct: 468 GYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEA 503



 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 155/331 (46%), Gaps = 32/331 (9%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           S   L+  L + GR  +A  +F+ L   G  PS++SY  LL ++  + ++   + +++E+
Sbjct: 47  SRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEV 106

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           ++       + +N +I + S  G  E A + L +M   G N T ++YN +I      GK 
Sbjct: 107 EQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKP 166

Query: 361 DLVVQCLDQMICR---RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
           +   + LD M+        PN  T+N  +   C++ KV+EA+ + + +      P     
Sbjct: 167 ERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTY 226

Query: 417 KNVISMLCRKGNTYPAFQMLYE--MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
             + +   +KG T  A   + E  + K    P+  T   +V G CREG + + L   R +
Sbjct: 227 NTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           +E     ++  +N+LI GF         +E+  R    G   +E+T T+L+  ++F  E+
Sbjct: 287 KEMRVEANLVVFNSLINGF---------VEVMDR---DGI--DEVTLTLLL--MSFNEEV 330

Query: 535 DIAAG---------LMKELYMR-EVLSRSTV 555
           ++            LMKE  ++ +V++ STV
Sbjct: 331 ELVGNQKMKVQVLTLMKECNVKADVITYSTV 361



 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 157/362 (43%), Gaps = 36/362 (9%)

Query: 217 ERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           ERG   EA  +   +   G  P+L+SY  LL  +  + +      +  ++   G     +
Sbjct: 57  ERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSI 116

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            +N ++ +    G  E+A   L +M E  L+P+  TYN LI    + G+ E++ E+LD M
Sbjct: 117 FFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLM 176

Query: 336 TRSGFNVTA----TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCE 390
              G NV       ++N ++   CK+ KV+   + + +M      P+  TYN IA    +
Sbjct: 177 LEEG-NVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 391 QGKV--QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           +G+    E+  + + +  ++  P    C  V+   CR+G      + +  M +     + 
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANL 295

Query: 449 YTYSSLVRG----MCREGMLDEA----------------------LEIFRILEENDYMPD 482
             ++SL+ G    M R+G +DE                       +++  +++E +   D
Sbjct: 296 VVFNSLINGFVEVMDRDG-IDEVTLTLLLMSFNEEVELVGNQKMKVQVLTLMKECNVKAD 354

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           +  Y+ ++  +      + + ++F+ MV  G  P+   Y+IL +G     E   A  L++
Sbjct: 355 VITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLE 414

Query: 543 EL 544
            L
Sbjct: 415 TL 416


>AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8947426-8949424 FORWARD
           LENGTH=574
          Length = 574

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 180/434 (41%), Gaps = 40/434 (9%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE 158
           V   T+L+  L +  +  +A  V + +  +G  P    YT L+  +  +   G    +V 
Sbjct: 45  VRSRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVS 104

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
           +VE+ G +  ++ +N ++      G +  ++Q L ++ + GL P   TY+ L++G     
Sbjct: 105 EVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAG 164

Query: 219 GVDEAMKLLDDIIARGG---EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
             + + +LLD ++  G     PN+ ++NVL+   CK+ + E+A E+ + +   G  P  V
Sbjct: 165 KPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTV 224

Query: 276 SYNILLRSLCYEGRWEEANGLLAE--MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           +YN +      +G    A   + E  + +E   P+  T  I++      GR       + 
Sbjct: 225 TYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVR 284

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
            M                    KE +V+  +   + +I           N    + ++  
Sbjct: 285 RM--------------------KEMRVEANLVVFNSLI-----------NGFVEVMDRDG 313

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           + E   + +    K +   +    N  S     G    A Q+  EM K G  PD++ YS 
Sbjct: 314 IDEVLTLMKECNVKADVITYSTVMNAWS---SAGYMEKAAQVFKEMVKAGVKPDAHAYSI 370

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L +G  R     +A E+   L   +  P++  +  +I G+C     D ++ +F +M   G
Sbjct: 371 LAKGYVRAKEPKKAEELLETL-IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFG 429

Query: 514 CVPNEITYTILVEG 527
             PN  T+  L+ G
Sbjct: 430 VSPNIKTFETLMWG 443



 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 187/441 (42%), Gaps = 42/441 (9%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R ++A    + +   G +P +   T LL  +    +      ++  +  SG   D+  + 
Sbjct: 60  RPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFN 119

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++N     GN+  A+Q + K++E G    T TYNTL+KG    GK  +S +LLD + ++
Sbjct: 120 AVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEE 179

Query: 199 G---LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT-------- 247
           G   + PN+ T++ L++   K++ V+EA +++  +   G  P+ V+YN + T        
Sbjct: 180 GNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGET 239

Query: 248 -----------------------------GLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
                                        G C+EGR  D +   R +       ++V +N
Sbjct: 240 VRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFN 299

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            L+         +  + +L  M E ++   V+TY+ ++ + S  G  E+A +V  EM ++
Sbjct: 300 SLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKA 359

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G    A +Y+ I+A+     K     + L + +     PN   +   I+  C  G + +A
Sbjct: 360 GVKPDAHAYS-ILAKGYVRAKEPKKAEELLETLIVESRPNVVIFTTVISGWCSNGSMDDA 418

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
             +F  +      P     + ++         + A ++L  M  CG  P++ T+  L   
Sbjct: 419 MRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEA 478

Query: 458 MCREGMLDEALEIFRILEEND 478
               G+ DE+ +    L+  D
Sbjct: 479 WRVAGLTDESNKAINALKCKD 499



 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 217 ERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           ERG   EA  +   +   G  P+L+SY  LL  +  + +      +  ++   G     +
Sbjct: 57  ERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSI 116

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            +N ++ +    G  E+A   L +M E  L+P+  TYN LI    + G+ E++ E+LD M
Sbjct: 117 FFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLM 176

Query: 336 TRSGFNVTA----TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCE 390
              G NV       ++N ++   CK+ KV+   + + +M      P+  TYN IA    +
Sbjct: 177 LEEG-NVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQ 235

Query: 391 QGKV--QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           +G+    E+  + + +  ++  P    C  V+   CR+G      + +  M +     + 
Sbjct: 236 KGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANL 295

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
             ++SL+ G       D   E+  +++E +   D+  Y+ ++  +      + + ++F+ 
Sbjct: 296 VVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKE 355

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           MV  G  P+   Y+IL +G     E   A  L++ L
Sbjct: 356 MVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETL 391



 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 6/310 (1%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           S   L+  L + GR  +A  +F+ L   G  PS++SY  LL ++  + ++   + +++E+
Sbjct: 47  SRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEV 106

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           ++       + +N +I + S  G  E A + L +M   G N T ++YN +I      GK 
Sbjct: 107 EQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKP 166

Query: 361 DLVVQCLDQMICR---RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
           +   + LD M+        PN  T+N  +   C++ KV+EA+ + + +      P     
Sbjct: 167 ERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTY 226

Query: 417 KNVISMLCRKGNTYPAFQMLYE--MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
             + +   +KG T  A   + E  + K    P+  T   +V G CREG + + L   R +
Sbjct: 227 NTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRM 286

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
           +E     ++  +N+LI GF +    D   E+   M       + ITY+ ++   +    +
Sbjct: 287 KEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYM 346

Query: 535 DIAAGLMKEL 544
           + AA + KE+
Sbjct: 347 EKAAQVFKEM 356


>AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17618948-17620588 FORWARD
           LENGTH=546
          Length = 546

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 218/525 (41%), Gaps = 35/525 (6%)

Query: 24  SCFLYSQVLNLRTFSLNKGF---SRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRL 80
           S  LY++ L   + SLN G    S VLA    S+ P  S  T     V K D  SK    
Sbjct: 25  SASLYNRTLCTASESLNHGVVDESYVLAELS-SLLPISSNKT----SVSKEDSSSKNQVA 79

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
            D+FL  E               +L     +  K + A++     +G G+  D      +
Sbjct: 80  IDSFLSAE--------------DKLRGVFLQKLKGKSAIQKSLSSLGIGLSID------I 119

Query: 141 VNFLCRRGNI-GYAMQLV--EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           V  +  RGN+ G AM       V E G      +Y+ +++ L      +  + +L  +  
Sbjct: 120 VADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVC 179

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
           +G+ P++   +  ++   +   V  A++L ++  + G + +  S+N LL  LC+      
Sbjct: 180 EGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSA 239

Query: 258 AIELFRDLPAKGFSP-SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           A  +F     KG  P    SYNI++      G  EE   +L EM E    P  ++Y+ LI
Sbjct: 240 AKSVFN--AKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLI 297

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             L   GR   + E+ D +   G    A  YN +I         D  ++   +M+     
Sbjct: 298 EGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECE 357

Query: 377 PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           PN  TY+  ++ L +  KV +A  IF+ + ++   P      + +  LC  G  + A  +
Sbjct: 358 PNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVI 417

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
             +  K G       Y  L++ + R G     L ++  ++E+ Y  D++ Y  ++ G C 
Sbjct: 418 YQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCI 477

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
               + ++ + +  + KG  PN   Y+ L   L   N+ ++A  L
Sbjct: 478 IGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKL 522



 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP-DAACYTHLVNFLCRRGNIGY 152
           G K        LL  LC+ +    A  V       G IP D+  Y  +++   + G +  
Sbjct: 216 GVKCSTESFNALLRCLCERSHVSAAKSVFN--AKKGNIPFDSCSYNIMISGWSKLGEVEE 273

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
             ++++++ E GF    ++Y+ L++GL   G++N S+++ D +  KG  P+   Y+ ++ 
Sbjct: 274 MEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMIC 333

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
                R  DE+M+    ++    EPNL +Y+ L++GL K  +  DA+E+F ++ ++G  P
Sbjct: 334 NFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLP 393

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +       L+ LC  G    A  +  +  +     S   Y +L+  LS  G+      V 
Sbjct: 394 TTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVW 453

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQ 391
           DEM  SG+      Y  I+  LC  G ++  V  +++ + + + PN   Y+ + + L   
Sbjct: 454 DEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMAS 513

Query: 392 GKVQEAFFIF 401
            K + A+ +F
Sbjct: 514 NKTELAYKLF 523



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 39/297 (13%)

Query: 257 DAIELFRDLPAK--GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
           +A+  F D   +  G +  V SY+++LR+L     +     +L  M  E ++P +    I
Sbjct: 132 EAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTI 191

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
            + S        +A E+ +E    G   +  S+N ++             +CL       
Sbjct: 192 AMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALL-------------RCL------- 231

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCRKGNTYPAF 433
                         CE+  V  A  +F +   K N P      N+ IS   + G      
Sbjct: 232 --------------CERSHVSAAKSVFNA--KKGNIPFDSCSYNIMISGWSKLGEVEEME 275

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           ++L EM + GF PD  +YS L+ G+ R G +++++EIF  ++    +PD + YNA+I  F
Sbjct: 276 KVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNF 335

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
              +  D S+  ++RM+++ C PN  TY+ LV GL    ++  A  + +E+  R VL
Sbjct: 336 ISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVL 392



 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 87/183 (47%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
            +++  +   M+ +  +P++   ++L+  L K  K   A+ + E ++  G++P     T 
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
            +  LC  G    AM + +K  + G +     Y  L+K L   GK    L + D + + G
Sbjct: 401 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESG 460

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
              +V  Y ++++G      ++ A+ ++++ + +G  PN   Y+ L + L    +TE A 
Sbjct: 461 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAY 520

Query: 260 ELF 262
           +LF
Sbjct: 521 KLF 523



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 98/222 (44%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ND+    + +  KG  PD      ++ +   +    +++R    ++     P+   Y+
Sbjct: 305 RINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYS 364

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            LV+ L +   +  A+++ E++   G    T    + +K LCS+G  + ++ +  +  K 
Sbjct: 365 KLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKA 424

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           G + +   Y  LL+   +       + + D++   G   ++  Y  ++ GLC  G  E+A
Sbjct: 425 GCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENA 484

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           + +  +   KGF P+   Y+ L   L    + E A  L  ++
Sbjct: 485 VLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKI 526


>AT2G17670.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675575 FORWARD
           LENGTH=349
          Length = 349

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 146/307 (47%), Gaps = 15/307 (4%)

Query: 67  RVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKA-------- 118
           ++ +N Q  +E  L + F        K     +A  +++  DL   N   ++        
Sbjct: 43  KLPQNTQAPREPSLRNPFKSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVN 102

Query: 119 --VRVMEMIVGS--GIIPDAACYTHLVNFLCRR--GNIGYAMQLVEKVEEHGFQTGTVTY 172
             V++ + I+ S     P  + +  L++  CR    +I    +++  +  +G +   VT 
Sbjct: 103 DTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTT 162

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           +  V+ LC  G+++++  L+  LT+K   P+ +TY+FLL+   K + +    + +D++  
Sbjct: 163 DIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRD 222

Query: 233 R-GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE 291
               +P+LVS+ +L+  +C      +A+ L   L   GF P    YN +++  C   +  
Sbjct: 223 DFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGS 282

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           EA G+  +M EE + P  +TYN LI  LS  GR E+A   L  M  +G+     +Y  ++
Sbjct: 283 EAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLM 342

Query: 352 ARLCKEG 358
             +C++G
Sbjct: 343 NGMCRKG 349



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 41/297 (13%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRLTK--KGLKPNVFTYSFLLEGAYK--ERGVDEAMKLL 227
           +N++++   S   +N +++L   + K     +P   T+  LL  A +  +  +    ++L
Sbjct: 88  HNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVL 147

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           + ++  G EP+ V+ ++ +  LC+ GR ++A +L ++L  K   P   +YN LL+ LC  
Sbjct: 148 NLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKC 207

Query: 288 GRWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
                    + EM D+ D+ P +V++ ILI ++       +A  ++ ++  +GF      
Sbjct: 208 KDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFL 267

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLG 405
           YN I+   C   K    V    +M      P++ TYN +   L + G+V+EA    ++  
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKT-- 325

Query: 406 NKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
                                            M   G+ PD+ TY+SL+ GMCR+G
Sbjct: 326 ---------------------------------MVDAGYEPDTATYTSLMNGMCRKG 349



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 136/325 (41%), Gaps = 42/325 (12%)

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEP-NLVSYNVLLTGLCKEGRTEDAIELFRDL--PA 267
           L   +K   + +A  L + I A    P +L  +N +L          D ++LF+ +    
Sbjct: 56  LRNPFKSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQ 115

Query: 268 KGFSPSVVSYNILLRSLCY--EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             F P   ++ ILL   C   +      + +L  M    L P  VT +I + SL   GR 
Sbjct: 116 PNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRV 175

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGTYNA 384
           ++A +++ E+T         +YN ++  LCK   + +V + +D+M       P+  ++  
Sbjct: 176 DEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTI 235

Query: 385 -IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
            I  +C    ++EA ++   LGN                                    G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGN-----------------------------------AG 260

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
           F PD + Y+++++G C      EA+ +++ ++E    PD   YN LI G  K  R + + 
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEAR 320

Query: 504 EIFQRMVNKGCVPNEITYTILVEGL 528
              + MV+ G  P+  TYT L+ G+
Sbjct: 321 MYLKTMVDAGYEPDTATYTSLMNGM 345



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 10/238 (4%)

Query: 162 EHGFQTGTVTYNTLVKGLC--SHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG 219
           +  F+ G  T+  L+   C      ++   ++L+ +   GL+P+  T    +    +   
Sbjct: 115 QPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGR 174

Query: 220 VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK----EGRTEDAIELFRDLPAKGFSPSVV 275
           VDEA  L+ ++  +   P+  +YN LL  LCK        E   E+  D   K   P +V
Sbjct: 175 VDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVK---PDLV 231

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           S+ IL+ ++C      EA  L++++      P    YN ++       +  +A  V  +M
Sbjct: 232 SFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM 291

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQG 392
              G      +YN +I  L K G+V+     L  M+   Y P+  TY ++   +C +G
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKG 349



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 100/200 (50%), Gaps = 6/200 (3%)

Query: 350 IIARLCK--EGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGN 406
           +++  C+  +  +  V + L+ M+     P++ T + A+  LCE G+V EA  + + L  
Sbjct: 128 LLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTE 187

Query: 407 KQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLVRGMCREGML 464
           K + P   Y  N ++  LC+  + +  ++ + EM       PD  +++ L+  +C    L
Sbjct: 188 KHS-PPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNL 246

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EA+ +   L    + PD   YN ++ GFC   +   ++ ++++M  +G  P++ITY  L
Sbjct: 247 REAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTL 306

Query: 525 VEGLAFENELDIAAGLMKEL 544
           + GL+    ++ A   +K +
Sbjct: 307 IFGLSKAGRVEEARMYLKTM 326


>AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18256086-18257975 FORWARD
           LENGTH=629
          Length = 629

 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 9/351 (2%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P +A    L+  L  ++   KA+ + E +   G + D   Y++L+    +  +    ++L
Sbjct: 199 PSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCVKNSDADGVLKL 258

Query: 157 VEKVEEH--GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFLLE 212
            ++++E   GF    V Y  L+KG        ++++  +    +   ++ +   Y+++LE
Sbjct: 259 YQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRMSAMAYNYVLE 318

Query: 213 GAYKERGVDEAMKLLDDIIARGGEP-----NLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
              +    DEA+KL D +      P     NL ++NV++ G C  G+ E+A+E+FR +  
Sbjct: 319 ALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGD 378

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
              SP  +S+N L+  LC      EA  L  EM+E+++ P   TY +L+ +    G+ ++
Sbjct: 379 FKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDE 438

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM 387
                  M  S        YN +  +L K GK+D      D M+ +    +E     +  
Sbjct: 439 GAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRA 498

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
           L E G++ E   I   + +     + +  +  +    RKG      + L E
Sbjct: 499 LSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGGREGDLEKLME 549



 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 173/388 (44%), Gaps = 18/388 (4%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T NT++       K    LQL   + + G+ PN+ TY+ + +     R  + A++     
Sbjct: 132 TVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIITYNLIFQAYLDVRKPEIALEHYKLF 191

Query: 231 IARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           I      P++ ++ +L+ GL      E A+E+  D+  KGF    V Y+ L+       +
Sbjct: 192 IDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCV---K 248

Query: 290 WEEANGLLAEMDE--EDLSPSV---VTYNILITSLSLHGRTEQAFEVLDEMT--RSGFNV 342
             +A+G+L    E  E L   V   V Y  L+    +    ++A E  +E     S   +
Sbjct: 249 NSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRM 308

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP-----NEGTYNAIAM-LCEQGKVQE 396
           +A +YN ++  L + GK D  ++  D +      P     N GT+N +    C  GK +E
Sbjct: 309 SAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEE 368

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
           A  +F+ +G+ +  P      N+++ LC       A ++  EM +    PD YTY  L+ 
Sbjct: 369 AMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMD 428

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
              +EG +DE    ++ + E++  P++  YN L     K  + D +   F  MV+K  + 
Sbjct: 429 TCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMD 488

Query: 517 NEITYTILVEGLAFENELDIAAGLMKEL 544
           +E  Y  ++  L+    LD    ++ E+
Sbjct: 489 DE-AYKFIMRALSEAGRLDEMLKIVDEM 515



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 143/349 (40%), Gaps = 50/349 (14%)

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWE---EA 293
           P + + N +L    ++ +    ++L   +   G +P++++YN++ ++     + E   E 
Sbjct: 128 PTIFTVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIITYNLIFQAYLDVRKPEIALEH 187

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             L   +D   L+PS+ T+ IL+  L  +   E+A E+ ++M   GF V    Y+ ++  
Sbjct: 188 YKLF--IDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMG 245

Query: 354 LCKEGKVDLVVQCLDQ-------------------------------MICRRYSPNEGT- 381
             K    D V++   +                               M C   +  E + 
Sbjct: 246 CVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSK 305

Query: 382 -------YN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK----NV-ISMLCRKGN 428
                  YN  +  L E GK  EA  +F ++  + N P H        NV ++  C  G 
Sbjct: 306 VRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGK 365

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
              A ++  +M     +PD+ ++++L+  +C   +L EA +++  +EE +  PD   Y  
Sbjct: 366 FEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGL 425

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
           L+    K  + D     ++ MV     PN   Y  L + L    +LD A
Sbjct: 426 LMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA 474


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/506 (20%), Positives = 212/506 (41%), Gaps = 51/506 (10%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           DV     +L   C++ K  +AV +++ +   GI P    +  L+    + G    AM L+
Sbjct: 246 DVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLM 305

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           +K+E  G      T+  ++ GL  +G   Q+L +  ++   G+ PN  T    +      
Sbjct: 306 QKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCL 365

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           + +++  ++    +  G   +++  N L+    K G+ EDA ++F  +  K     V ++
Sbjct: 366 KVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK----DVYTW 421

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           N ++   C  G   +A  L   M + +L P+++T+N +I+    +G   +A ++   M +
Sbjct: 422 NSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEK 481

Query: 338 SG-FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC------- 389
            G       ++N IIA   + GK D  ++   +M   R+ PN  T  ++   C       
Sbjct: 482 DGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAK 541

Query: 390 -----------------------------EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
                                        + G ++ +  IF  +  K     +    ++I
Sbjct: 542 MVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWN----SLI 597

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY- 479
                 G+  PA  +  +M   G TP+  T SS++      G +DE  ++F  +  NDY 
Sbjct: 598 GGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSI-ANDYH 656

Query: 480 -MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA 538
            +P +++ +A++  + +  R + +++  Q M  +   P    +   + G     ++D+A 
Sbjct: 657 IIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETP---IWESFLTGCRIHGDIDMAI 713

Query: 539 GLMKELYMREVLSRSTVDRLSMQYDL 564
              + L+  E  + +T   +S  Y L
Sbjct: 714 HAAENLFSLEPENTATESIVSQIYAL 739



 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 217/477 (45%), Gaps = 58/477 (12%)

Query: 95  QKPDVAQATQL-LYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           Q   V ++T L L + C  + +    R++    G    PD    T L++   + G I  A
Sbjct: 75  QGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADA 134

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++ + + E        T++ ++       +  +  +L   + K G+ P+ F +  +L+G
Sbjct: 135 RKVFDSMRERNL----FTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQG 190

Query: 214 AYK---------------ERGVDEAMKLLDDIIA----------------RGGEPNLVSY 242
                             + G+   +++ + I+A                R  E +++++
Sbjct: 191 CANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAW 250

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           N +L   C+ G+ E+A+EL +++  +G SP +V++NIL+      G+ + A  L+ +M+ 
Sbjct: 251 NSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMET 310

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF---------NVTATSYNPIIAR 353
             ++  V T+  +I+ L  +G   QA ++  +M  +G           V+A S   +I +
Sbjct: 311 FGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQ 370

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
             +   + + +  +D ++           + + M  + GK+++A  +F S+ NK     +
Sbjct: 371 GSEVHSIAVKMGFIDDVLVGN--------SLVDMYSKCGKLEDARKVFDSVKNKDVYTWN 422

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
               ++I+  C+ G    A+++   M      P+  T+++++ G  + G   EA+++F+ 
Sbjct: 423 ----SMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQR 478

Query: 474 LEENDYMP-DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +E++  +  +   +N +I G+ +  + D ++E+F++M     +PN +T   L+   A
Sbjct: 479 MEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACA 535



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 103/239 (43%), Gaps = 5/239 (2%)

Query: 95  QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
           +  DV     ++   C++    KA  +   +  + + P+   +  +++   + G+ G AM
Sbjct: 414 KNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAM 473

Query: 155 QLVEKVEEHG-FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            L +++E+ G  Q  T T+N ++ G   +GK +++L+L  ++      PN  T   LL  
Sbjct: 474 DLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPA 533

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
                G     ++   ++ R  +      N L     K G  E +  +F  +  K     
Sbjct: 534 CANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETK----D 589

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           ++++N L+      G +  A  L  +M  + ++P+  T + +I +  L G  ++  +V 
Sbjct: 590 IITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF 648


>AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16001036-16003072 REVERSE
           LENGTH=678
          Length = 678

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 205/455 (45%), Gaps = 17/455 (3%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P V     +L ++ ++ +   A  + + +    + PD   Y+ L+    + G    A+  
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 212

Query: 157 VEKVEEHGFQTGTVTYNTLV---KGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           ++K+E+       V Y+ L+   + LC + K   ++ +  RL + G+ P++  Y+ ++  
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSK---AISIFSRLKRSGITPDLVAYNSMINV 269

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K +   EA  L+ ++   G  PN VSY+ LL+   +  +  +A+ +F ++     +  
Sbjct: 270 YGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 329

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE---QAFE 330
           + + NI++         +EA+ L   + + D+ P+VV+YN   T L ++G  E   +A  
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN---TILRVYGEAELFGEAIH 386

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLC 389
           +   M R        +YN +I    K  + +     + +M  R   PN  TY+ I ++  
Sbjct: 387 LFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWG 446

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           + GK+  A  +FQ L +          + +I    R G    A ++L+E+      PD+ 
Sbjct: 447 KAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNI 502

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
              + +  + + G  +EA  +FR   E+  + DI  +  +I  + + QR    IE+F++M
Sbjct: 503 PRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM 562

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
              G  P+     +++     + E + A  + +E+
Sbjct: 563 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 597



 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 162/344 (47%), Gaps = 14/344 (4%)

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           F++    +E     ++ LLD +       P++ +YNV+L  + +  + + A  LF ++  
Sbjct: 124 FMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ 183

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           +  +P   +Y+ L+ S   EG ++ A   L +M+++ +S  +V Y+ LI          +
Sbjct: 184 RALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK 243

Query: 328 AFEVLDEMTRSGFNVTATSYNPII-----ARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           A  +   + RSG      +YN +I     A+L +E ++      + +M      PN  +Y
Sbjct: 244 AISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARL-----LIKEMNEAGVLPNTVSY 298

Query: 383 NAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPAFQMLYEMT 440
           + + ++  E  K  EA  +F  +  + NC +    C  +I +  +      A ++ + + 
Sbjct: 299 STLLSVYVENHKFLEALSVFAEM-KEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR 357

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           K    P+  +Y++++R      +  EA+ +FR+++  D   ++  YN +I  + K    +
Sbjct: 358 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 417

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +  + Q M ++G  PN ITY+ ++       +LD AA L ++L
Sbjct: 418 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKL 461



 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 180/402 (44%), Gaps = 26/402 (6%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV-TYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
           +V+ L R  +   ++ L++ V E    T +V  YN +++ +    + + +  L D + ++
Sbjct: 125 MVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQR 184

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT---GLCKEGRT 255
            L P+ +TYS L+    KE   D A+  L  +       +LV Y+ L+     LC   + 
Sbjct: 185 ALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK- 243

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             AI +F  L   G +P +V+YN ++        + EA  L+ EM+E  + P+ V+Y+ L
Sbjct: 244 --AISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTL 301

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR- 374
           ++    + +  +A  V  EM      +  T+ N +I      G++D+V +        R 
Sbjct: 302 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY---GQLDMVKEADRLFWSLRK 358

Query: 375 --YSPNEGTYNAIAMLCEQGKV-QEAFFIFQSLGNKQNCPMHDYCKNVI---SMLCRKGN 428
               PN  +YN I  +  + ++  EA  +F+ +  K      D  +NV+   +M+   G 
Sbjct: 359 MDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK------DIEQNVVTYNTMIKIYGK 412

Query: 429 TY---PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
           T     A  ++ EM   G  P++ TYS+++    + G LD A  +F+ L  +    D   
Sbjct: 413 TMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 472

Query: 486 YNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           Y  +I+ + +      +  +   +     +P E   TIL + 
Sbjct: 473 YQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 514



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 7/282 (2%)

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           ++PSV +YN++LR++    +++ A+GL  EM +  L+P   TY+ LITS    G  + A 
Sbjct: 151 YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSAL 210

Query: 330 EVLDEMTRSGFNVTATSYNPIIA---RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA 386
             L +M +   +     Y+ +I    RLC   K    +    ++     +P+   YN++ 
Sbjct: 211 SWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKA---ISIFSRLKRSGITPDLVAYNSMI 267

Query: 387 MLCEQGKV-QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFT 445
            +  + K+ +EA  + + +      P       ++S+         A  +  EM +    
Sbjct: 268 NVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCA 327

Query: 446 PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEI 505
            D  T + ++    +  M+ EA  +F  L + D  P++ +YN ++  + + +    +I +
Sbjct: 328 LDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHL 387

Query: 506 FQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           F+ M  K    N +TY  +++      E + A  L++E+  R
Sbjct: 388 FRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 429



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/473 (19%), Positives = 191/473 (40%), Gaps = 81/473 (17%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           KA+ +   +  SGI PD   Y  ++N   +      A  L++++ E G    TV+Y+TL+
Sbjct: 243 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302

Query: 177 KGLCSHGKLNQSLQLL-------------------------------DRL----TKKGLK 201
                + K  ++L +                                DRL     K  ++
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           PNV +Y+ +L    +     EA+ L   +  +  E N+V+YN ++    K    E A  L
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNL 422

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
            +++ ++G  P+ ++Y+ ++        W +A                            
Sbjct: 423 VQEMQSRGIEPNAITYSTII------SIWGKA---------------------------- 448

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
            G+ ++A  +  ++  SG  +    Y  +I    + G +    + L ++      P E  
Sbjct: 449 -GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRE-- 505

Query: 382 YNAIAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
             AI +L + G+ +EA ++F+     G  ++  +     N+ S   R  N    F+   +
Sbjct: 506 -TAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFE---K 561

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEND-YMPDIDNYNALILGFCKYQ 497
           M   G+ PDS   + ++    ++   ++A  ++R ++E     PD  ++  L L +   +
Sbjct: 562 MRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSL-YSSKK 620

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
             ++   +FQR+ +   V ++  + ++       ++L+ A+ +M  +  R +L
Sbjct: 621 DFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDASRVMNRMRERGIL 673



 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 12/248 (4%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +P+V     +L    ++    +A+ +  ++    I  +   Y  ++    +      A  
Sbjct: 362 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           LV++++  G +   +TY+T++      GKL+++  L  +L   G++ +   Y  ++  AY
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI-VAY 480

Query: 216 KERGV-DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
           +  G+   A +LL ++      P+ +     +T L K GRTE+A  +FR     G    +
Sbjct: 481 ERVGLMGHAKRLLHEL----KLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDI 536

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT---EQAFEV 331
             +  ++       R+     +  +M      P     N++   L+ +G+    E+A  V
Sbjct: 537 SVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDS---NVIAMVLNAYGKQREFEKADTV 593

Query: 332 LDEMTRSG 339
             EM   G
Sbjct: 594 YREMQEEG 601


>AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14761080-14762963 REVERSE
           LENGTH=627
          Length = 627

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 187/382 (48%), Gaps = 28/382 (7%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           K + + EM+       +   +  +++   + G I  A++L +++ E       V++N++V
Sbjct: 123 KQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMV 178

Query: 177 KGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
           K L   G++++++ L +R+ ++    +V +++ +++G  K   VDEA +L D +  R   
Sbjct: 179 KALVQRGRIDEAMNLFERMPRR----DVVSWTAMVDGLAKNGKVDEARRLFDCMPER--- 231

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
            N++S+N ++TG  +  R ++A +LF+ +P + F+    S+N ++          +A GL
Sbjct: 232 -NIISWNAMITGYAQNNRIDEADQLFQVMPERDFA----SWNTMITGFIRNREMNKACGL 286

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG-FNVTATSYNPIIARLC 355
              M E++    V+++  +IT    +   E+A  V  +M R G       +Y  I++  C
Sbjct: 287 FDRMPEKN----VISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILS-AC 341

Query: 356 KEGKVDLVVQCLDQMICRR-YSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
            +    +  Q + Q+I +  +  NE   +A+  M  + G++  A  +F    N   C   
Sbjct: 342 SDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFD---NGLVCQRD 398

Query: 414 DYCKN-VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
               N +I++    G+   A +M  +M K GF P + TY +L+      G++++ +E F+
Sbjct: 399 LISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFK 458

Query: 473 ILEENDYMPDIDNYNALILGFC 494
            L  ++ +P  + +   ++  C
Sbjct: 459 DLVRDESLPLREEHYTCLVDLC 480



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 199/432 (46%), Gaps = 43/432 (9%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +P V Q   L+ +LCK  K  +A ++ + +       D   +TH++    + G++  A +
Sbjct: 43  RPRVPQPEWLIGELCKVGKIAEARKLFDGLPER----DVVTWTHVITGYIKLGDMREARE 98

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           L ++V+    +   VT+  +V G     +L+ +  L   + ++    NV +++ +++G  
Sbjct: 99  LFDRVDS---RKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPER----NVVSWNTMIDGYA 151

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           +   +D+A++L D++  R    N+VS+N ++  L + GR ++A+ LF  +P +     VV
Sbjct: 152 QSGRIDKALELFDEMPER----NIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVV 203

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           S+  ++  L   G+ +EA  L   M E +    ++++N +IT  + + R ++A ++   M
Sbjct: 204 SWTAMVDGLAKNGKVDEARRLFDCMPERN----IISWNAMITGYAQNNRIDEADQLFQVM 259

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML---CEQG 392
               F     S+N +I    +  +++      D+M      P +   +   M+    E  
Sbjct: 260 PERDF----ASWNTMITGFIRNREMNKACGLFDRM------PEKNVISWTTMITGYVENK 309

Query: 393 KVQEAFFIFQS-LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           + +EA  +F   L +    P      +++S            Q+   ++K     +    
Sbjct: 310 ENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVT 369

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYM--PDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           S+L+    + G L  A ++F    +N  +   D+ ++N++I  +  +     +IE++ +M
Sbjct: 370 SALLNMYSKSGELIAARKMF----DNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQM 425

Query: 510 VNKGCVPNEITY 521
              G  P+ +TY
Sbjct: 426 RKHGFKPSAVTY 437



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 153/360 (42%), Gaps = 67/360 (18%)

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
           Q   L+  +     +P V    +L+    K   + EA KL D +  R    ++V++  ++
Sbjct: 29  QLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPER----DVVTWTHVI 84

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
           TG  K G   +A ELF  + ++    +VV++  ++       +   A  L  EM E +  
Sbjct: 85  TGYIKLGDMREARELFDRVDSR---KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERN-- 139

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
             VV++N +I   +  GR ++A E+ DEM          S+N ++  L + G++D  +  
Sbjct: 140 --VVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMVKALVQRGRIDEAMNL 193

Query: 367 LDQMICRRYSPNEGTYNAIAM---LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML 423
            ++M      P     +  AM   L + GKV EA  +F  +  +          N+IS  
Sbjct: 194 FERM------PRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER----------NIIS-- 235

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
                                      +++++ G  +   +DEA ++F+++ E D+    
Sbjct: 236 ---------------------------WNAMITGYAQNNRIDEADQLFQVMPERDFA--- 265

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            ++N +I GF + +  + +  +F RM  K  +      T  VE    E  L++ + ++++
Sbjct: 266 -SWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRD 324



 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 134/305 (43%), Gaps = 32/305 (10%)

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           R+     L R + +    P V     L+  LC  G+  EA  L   + E D    VVT+ 
Sbjct: 26  RSVQLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERD----VVTWT 81

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
            +IT     G   +A E+ D +      VT T+   +++   +  ++ +      +M  R
Sbjct: 82  HVITGYIKLGDMREARELFDRVDSRKNVVTWTA---MVSGYLRSKQLSIAEMLFQEMPER 138

Query: 374 RYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA 432
               N  ++N  I    + G++ +A  +F  +  +     +    +++  L ++G    A
Sbjct: 139 ----NVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWN----SMVKALVQRGRIDEA 190

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD--IDNYNALI 490
             +   M +     D  +++++V G+ + G +DEA  +F      D MP+  I ++NA+I
Sbjct: 191 MNLFERMPR----RDVVSWTAMVDGLAKNGKVDEARRLF------DCMPERNIISWNAMI 240

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVL 550
            G+ +  R D + ++FQ M  +       ++  ++ G     E++ A GL   +  + V+
Sbjct: 241 TGYAQNNRIDEADQLFQVMPERDFA----SWNTMITGFIRNREMNKACGLFDRMPEKNVI 296

Query: 551 SRSTV 555
           S +T+
Sbjct: 297 SWTTM 301


>AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4903012-4904229 FORWARD
           LENGTH=405
          Length = 405

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 1/247 (0%)

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           G++N+++++L  +   G  P+  +++F+L      +  DE  K+       G E +    
Sbjct: 146 GRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCL 205

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           N+L+ GLC+ G  E A++L  + P +   P+V++++ L+R  C +G++EEA  LL  M++
Sbjct: 206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK 265

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
           E + P  +T+NILI+ L   GR E+  ++L+ M   G      +Y  ++  L  + +   
Sbjct: 266 ERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLE 325

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
             + + QMI     P+  +Y  + + LCE   V E  ++ + + N    P       V+ 
Sbjct: 326 AKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPKTLMWWKVVQ 385

Query: 422 MLCRKGN 428
            +  K N
Sbjct: 386 CVVSKNN 392



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 102 ATQLLYDLCK--SNKARKAVRVMEMIVGS---GIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           + +  Y+L +   N A +  R +E++ G    G  P +  +  ++N L          ++
Sbjct: 130 SEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKI 189

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
                + G +      N L+KGLC  G L  +LQLLD   ++  +PNV T+S L+ G   
Sbjct: 190 FVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCN 249

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           +   +EA KLL+ +     EP+ +++N+L++GL K+GR E+ I+L   +  KG  P+  +
Sbjct: 250 KGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGT 309

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y  +L  L  + R  EA  ++++M    + PS ++Y  ++  L       +   VL +M 
Sbjct: 310 YQEVLYGLLDKKRNLEAKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMV 369

Query: 337 RSGF 340
             GF
Sbjct: 370 NHGF 373



 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 101/184 (54%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+  DA C   L+  LC  GN+  A+QL+++  +   +   +T++ L++G C+ GK  ++
Sbjct: 197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEA 256

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
            +LL+R+ K+ ++P+  T++ L+ G  K+  V+E + LL+ +  +G EPN  +Y  +L G
Sbjct: 257 FKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYG 316

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           L  + R  +A E+   + + G  PS +SY  ++  LC      E + +L +M      P 
Sbjct: 317 LLDKKRNLEAKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPK 376

Query: 309 VVTY 312
            + +
Sbjct: 377 TLMW 380



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 91/173 (52%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           L+  LC+S     A+++++        P+   ++ L+   C +G    A +L+E++E+  
Sbjct: 208 LIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER 267

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
            +  T+T+N L+ GL   G++ + + LL+R+  KG +PN  TY  +L G   ++   EA 
Sbjct: 268 IEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAK 327

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           +++  +I+ G  P+ +SY  ++ GLC+     +   + R +   GF P  + +
Sbjct: 328 EMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPKTLMW 380



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 114/230 (49%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G I  A++++  + + G    + ++N ++  L S    ++  ++     K G++ +    
Sbjct: 146 GRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCL 205

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           + L++G  +   ++ A++LLD+   +   PN+++++ L+ G C +G+ E+A +L   +  
Sbjct: 206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK 265

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           +   P  +++NIL+  L  +GR EE   LL  M  +   P+  TY  ++  L    R  +
Sbjct: 266 ERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLE 325

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
           A E++ +M   G   +  SY  ++  LC+   V  +   L QM+   + P
Sbjct: 326 AKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVP 375



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 1/254 (0%)

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           GR   A  +L  M +    PS  ++N ++  L      ++  ++     + G  + A   
Sbjct: 146 GRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCL 205

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGN 406
           N +I  LC+ G ++  +Q LD+   ++  PN  T++  I   C +GK +EAF + + +  
Sbjct: 206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK 265

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE 466
           ++  P       +IS L +KG       +L  M   G  P+  TY  ++ G+  +    E
Sbjct: 266 ERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLE 325

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           A E+   +      P   +Y  ++LG C+ +       + ++MVN G VP  + +  +V+
Sbjct: 326 AKEMMSQMISWGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVPKTLMWWKVVQ 385

Query: 527 GLAFENELDIAAGL 540
            +  +N  D  A L
Sbjct: 386 CVVSKNNDDSQANL 399



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 1/218 (0%)

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN++    +L GR  +A E+L  M   G   ++ S+N I+  L      D + +      
Sbjct: 135 YNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAP 194

Query: 372 CRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
                 +    N  I  LCE G ++ A  +      +++ P       +I   C KG   
Sbjct: 195 KLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFE 254

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
            AF++L  M K    PD+ T++ L+ G+ ++G ++E +++   ++     P+   Y  ++
Sbjct: 255 EAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVL 314

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            G    +R   + E+  +M++ G  P+ ++Y  +V GL
Sbjct: 315 YGLLDKKRNLEAKEMMSQMISWGMRPSFLSYKKMVLGL 352



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 57/107 (53%)

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           K G   D+   + L++G+C  G L+ AL++     +    P++  ++ LI GFC   + +
Sbjct: 195 KLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFE 254

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            + ++ +RM  +   P+ IT+ IL+ GL  +  ++    L++ + ++
Sbjct: 255 EAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVK 301


>AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4543265-4545256 REVERSE
           LENGTH=634
          Length = 634

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           + A   L YMV  G+ P +   ++L  +LC+ +K+   ++  E++   G   +   Y+ +
Sbjct: 344 DSAVEFLVYMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLM 403

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++FLC+ G +  +   ++++++ G       YN L++  C    +  + +L D +  +G 
Sbjct: 404 ISFLCKAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGC 463

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
           K N+ TY+ L+    +E   +E+++L D ++ RG EP+   Y  L+ GLCKE + E A+E
Sbjct: 464 KMNLTTYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAME 523

Query: 261 LFR---DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           +FR   +   K  +  V+S  +L  +LC  G   EA+ LL E + 
Sbjct: 524 VFRKCMERDHKTVTRRVLSEFVL--NLCSNGHSGEASQLLREREH 566



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 162/345 (46%), Gaps = 15/345 (4%)

Query: 102 ATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVE 161
           A  +L+ LCK ++   A  ++E +      PD   Y  +       GN+     +++K  
Sbjct: 226 ALLILHSLCKCSREMDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKR 285

Query: 162 EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
           + G    +  Y   +  L S  +L ++ ++ + +       +      L+ G+      D
Sbjct: 286 KLGVAPRSSDYRAFILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALI-GSVSAVDPD 344

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
            A++ L  +++ G  P + + + L   LC+  +++  I+ +  L +KG+   + SY++++
Sbjct: 345 SAVEFLVYMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMI 404

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
             LC  GR  E+   L EM +E L+P V  YN LI +         A ++ DEM   G  
Sbjct: 405 SFLCKAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCK 464

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEAFFI 400
           +  T+YN +I +L +EG+ +  ++  D+M+ R   P+E  Y + I  LC++ K++ A  +
Sbjct: 465 MNLTTYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEV 524

Query: 401 FQSLGNKQNCPMHDY---CKNVISM----LCRKGNTYPAFQMLYE 438
           F      + C   D+    + V+S     LC  G++  A Q+L E
Sbjct: 525 F------RKCMERDHKTVTRRVLSEFVLNLCSNGHSGEASQLLRE 563



 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/481 (21%), Positives = 200/481 (41%), Gaps = 19/481 (3%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVME----MIVGSGIIPDAA 135
           LN   L L +     Q+P  +  +   + + KS    +    M+     +  + I+ D++
Sbjct: 59  LNHHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSS 118

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY----NTLVKGLCSHGKLNQSLQL 191
            Y  L++ L     +G   Q    V E  F TG   +    N L+ GL S G  + + +L
Sbjct: 119 VYRSLIDTLV----LGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKL 174

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL---VSYNVLLTG 248
             ++  KG+  N   +   +    +    ++ ++L+D++  +    N+   +   ++L  
Sbjct: 175 FVKMRHKGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEV--KKANLNINGSIIALLILHS 232

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           LCK  R  DA  +  +L      P  ++Y ++  +    G   E   +L +  +  ++P 
Sbjct: 233 LCKCSREMDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPR 292

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
              Y   I  L    R  +A EV + +    F +     + +I  +      D  V+ L 
Sbjct: 293 SSDYRAFILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDP-DSAVEFLV 351

Query: 369 QMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            M+     P   T + ++  LC   K       ++ L +K           +IS LC+ G
Sbjct: 352 YMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAG 411

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
               ++  L EM K G  PD   Y++L+   C+  M+  A +++  +       ++  YN
Sbjct: 412 RVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYN 471

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            LI    +    + S+ +F +M+ +G  P+E  Y  L+EGL  E +++ A  + ++   R
Sbjct: 472 VLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMER 531

Query: 548 E 548
           +
Sbjct: 532 D 532



 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 168/414 (40%), Gaps = 42/414 (10%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSG--IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE 162
           L+  L    KA+ A  V+E    +G  I PD      L+  L   G   YA +L  K+  
Sbjct: 123 LIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVC--NRLLAGLTSDGCYDYAQKLFVKMRH 180

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFL-LEGAYKERGVD 221
            G    T+ +   +   C   + NQ L+L+D + K  L  N    + L L    K     
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKKANLNINGSIIALLILHSLCKCSREM 240

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           +A  +L+++     +P+ ++Y V+       G   +   + +     G +P    Y   +
Sbjct: 241 DAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAFI 300

Query: 282 RSLCYEGRWEEAN----------------------GLLAEMDEEDLS------------P 307
             L    R  EA                       G ++ +D +               P
Sbjct: 301 LDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKLP 360

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           ++ T + L  +L  H +++   +  + ++  G+     SY+ +I+ LCK G+V      L
Sbjct: 361 AIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTAL 420

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-ISMLCR 425
            +M     +P+   YNA I   C+   ++ A  ++  +   + C M+    NV I  L  
Sbjct: 421 QEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMF-VEGCKMNLTTYNVLIRKLSE 479

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
           +G    + ++  +M + G  PD   Y SL+ G+C+E  ++ A+E+FR   E D+
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDH 533



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  R+ +++  L+ M  +G  PDV+    L+   CK+   R A ++ + +   G   +  
Sbjct: 409 KAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLT 468

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  L+  L   G    +++L +K+ E G +     Y +L++GLC   K+  ++++  + 
Sbjct: 469 TYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKC 528

Query: 196 TKKGLK 201
            ++  K
Sbjct: 529 MERDHK 534


>AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4229994-4231178 REVERSE
           LENGTH=394
          Length = 394

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 12/323 (3%)

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE--GAYKERGVDE 222
           F+     Y   V+ L +  K     ++L+   K    PN+    F+      Y   G+ E
Sbjct: 67  FRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKY---PNMSKEGFVARIINLYGRVGMFE 123

Query: 223 -AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE-LFRDLPAK-GFSPSVVSYNI 279
            A K+ D++  R  +   +S+N LL   C   +  D +E +F++LP K    P V SYN 
Sbjct: 124 NAQKVFDEMPERNCKRTALSFNALLNA-CVNSKKFDLVEGIFKELPGKLSIEPDVASYNT 182

Query: 280 LLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           L++ LC +G + EA  L+ E++ + L P  +T+NIL+      G+ E+  ++   M    
Sbjct: 183 LIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKN 242

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
                 SYN  +  L  E K + +V   D++      P+  T+ A I     +GK+ EA 
Sbjct: 243 VKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAI 302

Query: 399 FIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
             ++ +  K  C P+     +++  +C+ G+   A+++  E+       D      +V  
Sbjct: 303 TWYKEI-EKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDA 361

Query: 458 MCREGMLDEALEIFRILEENDYM 480
           + +    DEA EI  + + NDY+
Sbjct: 362 LVKGSKQDEAEEIVELAKTNDYL 384



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 103/205 (50%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
            I PD A Y  L+  LC +G+   A+ L++++E  G +   +T+N L+    + GK  + 
Sbjct: 172 SIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEG 231

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
            Q+  R+ +K +K ++ +Y+  L G   E   +E + L D +     +P++ ++  ++ G
Sbjct: 232 EQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKG 291

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
              EG+ ++AI  ++++   G  P    +N LL ++C  G  E A  L  E+  + L   
Sbjct: 292 FVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVD 351

Query: 309 VVTYNILITSLSLHGRTEQAFEVLD 333
                 ++ +L    + ++A E+++
Sbjct: 352 EAVLQEVVDALVKGSKQDEAEEIVE 376



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 161/374 (43%), Gaps = 10/374 (2%)

Query: 24  SCFLYSQVLNLRTFSLNKGFSRVLASAQISISPKDSIFTLPNWRVGKNDQKSKEVRLNDA 83
           S FL     +  T +  + FS V A+A     PK S+ TL N    + D K    +   A
Sbjct: 5   SRFLLRGNFSFSTHTNRRFFSAVTAAAATPSPPKPSLITLVN---DERDPKFITEKFKKA 61

Query: 84  FLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
               E+      + ++A   + +  L  + K      ++E       +        ++N 
Sbjct: 62  -CQAEWF-----RKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINL 115

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKP 202
             R G    A ++ +++ E   +   +++N L+    +  K +    +   L  K  ++P
Sbjct: 116 YGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEP 175

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +V +Y+ L++G   +    EA+ L+D+I  +G +P+ +++N+LL     +G+ E+  +++
Sbjct: 176 DVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIW 235

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
             +  K     + SYN  L  L  E + EE   L  ++   +L P V T+  +I      
Sbjct: 236 ARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSE 295

Query: 323 GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           G+ ++A     E+ ++G       +N ++  +CK G ++   +   ++  +R   +E   
Sbjct: 296 GKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVL 355

Query: 383 NAIAMLCEQGKVQE 396
             +     +G  Q+
Sbjct: 356 QEVVDALVKGSKQD 369



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT- 325
           A+ F  ++  Y   +R L    ++E    +L   +E++  P++     +   ++L+GR  
Sbjct: 64  AEWFRKNIAVYERTVRRLAAAKKFEWVEEIL---EEQNKYPNMSKEGFVARIINLYGRVG 120

Query: 326 --EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGTY 382
             E A +V DEM       TA S+N ++       K DLV     ++  +    P+  +Y
Sbjct: 121 MFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASY 180

Query: 383 NA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
           N  I  LC +G   EA  +   + NK   P H     ++     KG      Q+   M +
Sbjct: 181 NTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVE 240

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
                D  +Y++ + G+  E   +E + +F  L+ N+  PD+  + A+I GF    + D 
Sbjct: 241 KNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDE 300

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTV 555
           +I  ++ +   GC P +  +  L+  +    +L+ A  L KE++ + +L    V
Sbjct: 301 AITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAV 354



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 37/278 (13%)

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVT 311
           G  E+A ++F ++P +    + +S+N LL +     +++   G+  E+  +  + P V +
Sbjct: 120 GMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVAS 179

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           YN LI  L   G   +A  ++DE+   G      ++N ++     +GK +   Q   +M+
Sbjct: 180 YNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMV 239

Query: 372 CRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
            +    +  +YNA  + L  + K +E   +F  L                     KGN  
Sbjct: 240 EKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKL---------------------KGNE- 277

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
                          PD +T++++++G   EG LDEA+  ++ +E+N   P    +N+L+
Sbjct: 278 -------------LKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLL 324

Query: 491 LGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
              CK    + + E+ + +  K  + +E     +V+ L
Sbjct: 325 PAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDAL 362



 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 64/139 (46%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           MV K  K D+      L  L   NK+ + V + + + G+ + PD   +T ++      G 
Sbjct: 238 MVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGK 297

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A+   +++E++G +     +N+L+  +C  G L  + +L   +  K L  +      
Sbjct: 298 LDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQE 357

Query: 210 LLEGAYKERGVDEAMKLLD 228
           +++   K    DEA ++++
Sbjct: 358 VVDALVKGSKQDEAEEIVE 376


>AT1G80550.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:30285358-30286704 REVERSE
           LENGTH=448
          Length = 448

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 22/384 (5%)

Query: 145 CRRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK-P 202
           C   +   A++    VE E GF+  T T+N ++  L  + +   S  L++R+       P
Sbjct: 56  CYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVP 115

Query: 203 NVFTYSFLLEGAYKERGVDEAMKL---LDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           N  T+  + +       V EA+     LDD   R    +  S+  L+  LC+     +A 
Sbjct: 116 NHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLR----DETSFYNLVDALCEHKHVVEAE 171

Query: 260 ELF--RDLPAKGFSPSVVS-YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           EL   +++   GFS S    +N++LR     G W +      +MD E ++  + +Y+I +
Sbjct: 172 ELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYM 231

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
             +   G+  +A ++  EM      +   +YN +I  +     V+  ++   +M  R   
Sbjct: 232 DIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCE 291

Query: 377 PNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC---RKGNTYPA 432
           PN  T+N I  +LCE G++++A+ +   +  +   P      + I+ +C   R       
Sbjct: 292 PNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQP------DSITYMCLFSRLEKPSEI 345

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILG 492
             +   M + G  P   TY  L+R   R G L   L +++ ++E+   PD   YNA+I  
Sbjct: 346 LSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDA 405

Query: 493 FCKYQRTDLSIEIFQRMVNKGCVP 516
             +    D++ E  + M+ +G  P
Sbjct: 406 LIQKGMLDMAREYEEEMIERGLSP 429



 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLV--EKVEEHGFQ-TGTVTYNTLVKGLCSHGKLNQSL 189
           D   + +LV+ LC   ++  A +L   + V  +GF  + T  +N +++G    G   +  
Sbjct: 150 DETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCK 209

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           +   ++  +G+  ++F+YS  ++   K     +A+KL  ++ +R  + ++V+YN ++  +
Sbjct: 210 EYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAI 269

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
                 E  I +FR++  +G  P+V ++N +++ LC +GR  +A  +L EM +    P  
Sbjct: 270 GASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDS 329

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
           +TY  L + L    +  +   +   M RSG      +Y  ++ +  + G +  V+     
Sbjct: 330 ITYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKT 386

Query: 370 MICRRYSPNEGTYNAI 385
           M     +P+   YNA+
Sbjct: 387 MKESGDTPDSAAYNAV 402



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 3/199 (1%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           +CKS K  KAV++ + +    +  D   Y  ++  +     + + +++  ++ E G +  
Sbjct: 234 MCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPN 293

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
             T+NT++K LC  G++  + ++LD + K+G +P+  TY  L     K     E + L  
Sbjct: 294 VATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKP---SEILSLFG 350

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +I  G  P + +Y +L+    + G  +  + +++ +   G +P   +YN ++ +L  +G
Sbjct: 351 RMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKG 410

Query: 289 RWEEANGLLAEMDEEDLSP 307
             + A     EM E  LSP
Sbjct: 411 MLDMAREYEEEMIERGLSP 429



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 118/246 (47%), Gaps = 18/246 (7%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+  D   Y+  ++ +C+ G    A++L ++++    +   V YNT+++ + +   +   
Sbjct: 219 GVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFG 278

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           +++   + ++G +PNV T++ +++   ++  + +A ++LD++  RG +P+ ++Y  L + 
Sbjct: 279 IRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSR 338

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           L K     + + LF  +   G  P + +Y +L+R     G  +    +   M E   +P 
Sbjct: 339 LEKPS---EILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPD 395

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
              YN +I +L   G  + A E  +EM   G              L    + +LV + LD
Sbjct: 396 SAAYNAVIDALIQKGMLDMAREYEEEMIERG--------------LSPRRRPELVEKSLD 441

Query: 369 Q-MICR 373
           + ++CR
Sbjct: 442 ETLVCR 447



 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  +  K DV     ++  +  S      +RV   +   G  P+ A +  ++  LC  G 
Sbjct: 250 MKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGR 309

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++++++ + G Q  ++TY  L   L    K ++ L L  R+ + G++P + TY  
Sbjct: 310 MRDAYRMLDEMPKRGCQPDSITYMCLFSRL---EKPSEILSLFGRMIRSGVRPKMDTYVM 366

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+    +   +   + +   +   G  P+  +YN ++  L ++G  + A E   ++  +G
Sbjct: 367 LMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERG 426

Query: 270 FSP 272
            SP
Sbjct: 427 LSP 429



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 11/271 (4%)

Query: 285 CYEGRWEEANGLLAEMDEED-LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV- 342
           CY   W++A      ++ E     +  T+N +I  L  +   E ++ +++ M  +  +V 
Sbjct: 56  CYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVP 115

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEA---FF 399
              ++  +  R      V   +   D++           YN +  LCE   V EA    F
Sbjct: 116 NHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAEELCF 175

Query: 400 IFQSLGNK---QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
               +GN     N  +H+      S L   G     ++   +M   G T D ++YS  + 
Sbjct: 176 GKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWK---KMDTEGVTKDLFSYSIYMD 232

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
            MC+ G   +A+++++ ++      D+  YN +I      Q  +  I +F+ M  +GC P
Sbjct: 233 IMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEP 292

Query: 517 NEITYTILVEGLAFENELDIAAGLMKELYMR 547
           N  T+  +++ L  +  +  A  ++ E+  R
Sbjct: 293 NVATHNTIIKLLCEDGRMRDAYRMLDEMPKR 323



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 127/298 (42%), Gaps = 21/298 (7%)

Query: 250 CKEGRTEDAIELFRDLPAK-GFSPSVVSYN----ILLRSLCYEGRWEEANGLLAEMDEED 304
           C     + A+E F  +  + GF  +  ++N    IL +   +E  W   N ++   +   
Sbjct: 56  CYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTES-- 113

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV-TATSYNPIIARLCKEGKVDLV 363
             P+ VT+ I+          ++A +  D++    FN+   TS+  ++  LC+   V   
Sbjct: 114 -VPNHVTFRIVFKRYVTAHLVQEAIDAYDKL--DDFNLRDETSFYNLVDALCEHKHVVEA 170

Query: 364 VQ-CLDQ-MICRRYS-PNEGTYNAI----AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
            + C  + +I   +S  N   +N I    + L   GK +E +    + G  ++   +   
Sbjct: 171 EELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSI- 229

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
              + ++C+ G  + A ++  EM       D   Y++++R +     ++  + +FR + E
Sbjct: 230 --YMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRE 287

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENEL 534
               P++  +N +I   C+  R   +  +   M  +GC P+ ITY  L   L   +E+
Sbjct: 288 RGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEI 345


>AT2G38420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:16091093-16092454 FORWARD
           LENGTH=453
          Length = 453

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 143/280 (51%), Gaps = 24/280 (8%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN------IGYAMQLVE 158
           L+  LC+  +   A  ++  +    +I D   Y+ L++ +C+  +      IGY    +E
Sbjct: 185 LIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGY----LE 240

Query: 159 KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKER 218
            + +  F  G   Y  +++ L   G+  + + +L+++    ++P++  Y+ +L+G   + 
Sbjct: 241 DLRKTRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADE 300

Query: 219 GVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYN 278
              +A KL D+++  G  P++ +YNV + GLCK+   E A+++   +   G  P+VV+YN
Sbjct: 301 DYPKADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYN 360

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS-------LSLHGRTEQAFEV 331
           IL+++L   G    A  L  EM+   ++ +  T++I+I++       +  HG  E+AF +
Sbjct: 361 ILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEEAFNM 420

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
                     V ++    +I+RLC++G +D  V+ L  ++
Sbjct: 421 -------NVFVKSSRIEEVISRLCEKGLMDQAVELLAHLV 453



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 145/340 (42%), Gaps = 18/340 (5%)

Query: 112 SNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR-RGNIGYAMQLVEKVEEHGFQTGTV 170
           S +  +A+ V   I     +P A     L+  L R R ++    +++ K    G +    
Sbjct: 121 SGRIEEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEES 180

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA--YKERGVDEAMKLLD 228
           T+  L+  LC  G+++ + +L+  +++  +  +   YS LL     +K+    + +  L+
Sbjct: 181 TFGILIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGYLE 240

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           D+      P L  Y V++  L + GR ++ + +   +      P +V Y I+L+ +  + 
Sbjct: 241 DLRKTRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADE 300

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
            + +A+ L  E+    L+P V TYN+ I  L      E A +++  M + G      +YN
Sbjct: 301 DYPKADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYN 360

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI--------AMLCEQGKVQEAFFI 400
            +I  L K G +        +M     + N  T++ +         ++C  G ++EAF  
Sbjct: 361 ILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEEAF-- 418

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
                N          + VIS LC KG    A ++L  + 
Sbjct: 419 -----NMNVFVKSSRIEEVISRLCEKGLMDQAVELLAHLV 453



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 12/310 (3%)

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR-WEEANGLLAEMDEEDLSPSVVT 311
           GR E+AIE+F  +P     PS  + N LL  L  + +  E    +L +     +     T
Sbjct: 122 GRIEEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEEST 181

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL--VVQCLDQ 369
           + ILI +L   G  + A E++  M++    V    Y+ +++ +CK        V+  L+ 
Sbjct: 182 FGILIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGYLED 241

Query: 370 MICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHD---YCKNVISMLCR 425
           +   R+SP    Y  +   L E G+ +E      S+ N+  C   +    C  ++     
Sbjct: 242 LRKTRFSPGLRDYTVVMRFLVEGGRGKEVV----SVLNQMKCDRVEPDLVCYTIVLQGVI 297

Query: 426 KGNTYPAFQMLY-EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
               YP    L+ E+   G  PD YTY+  + G+C++  ++ AL++   + +    P++ 
Sbjct: 298 ADEDYPKADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVV 357

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            YN LI    K      +  +++ M   G   N  T+ I++      +E+  A GL++E 
Sbjct: 358 TYNILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEEA 417

Query: 545 YMREVLSRST 554
           +   V  +S+
Sbjct: 418 FNMNVFVKSS 427



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 25/367 (6%)

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL--TKKG 199
           N L    N      L+   + H  +     Y  ++K L    +L     +L  L  ++K 
Sbjct: 45  NLLTDSENASVMRTLLSSFQLHNCEPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKF 104

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
             P       +    +  R ++EA+++   I      P+  + N LL  L    R   ++
Sbjct: 105 DTPESIFRDVIAAYGFSGR-IEEAIEVFFKIPNFRCVPSAYTLNALLLVLV---RKRQSL 160

Query: 260 ELFRDLPAK----GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           EL  ++  K    G      ++ IL+ +LC  G  + A  L+  M ++ +      Y+ L
Sbjct: 161 ELVPEILVKACRMGVRLEESTFGILIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRL 220

Query: 316 ITSLSLHGRTEQAFEV---LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
           ++S+  H +    F+V   L+++ ++ F+     Y  ++  L + G+   VV  L+QM C
Sbjct: 221 LSSVCKH-KDSSCFDVIGYLEDLRKTRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKC 279

Query: 373 RRYSPNEGTYNAIAMLCEQGKVQEAFF-----IFQSLGNKQNCPMHDYCKNV-ISMLCRK 426
            R  P+   Y  +     QG + +  +     +F  L      P   Y  NV I+ LC++
Sbjct: 280 DRVEPDLVCYTIVL----QGVIADEDYPKADKLFDELLLLGLAP-DVYTYNVYINGLCKQ 334

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
            +   A +M+  M K G  P+  TY+ L++ + + G L  A  +++ +E N    +   +
Sbjct: 335 NDIEGALKMMSSMNKLGSEPNVVTYNILIKALVKAGDLSRAKTLWKEMETNGVNRNSHTF 394

Query: 487 NALILGF 493
           + +I  +
Sbjct: 395 DIMISAY 401



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 111/255 (43%), Gaps = 20/255 (7%)

Query: 57  KDSIFTLPNW--RVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNK 114
           +DS+   P    R+  +  K K+    D   +LE +      P +   T ++  L +  +
Sbjct: 207 QDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGYLEDLRKTRFSPGLRDYTVVMRFLVEGGR 266

Query: 115 ARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
            ++ V V+  +    + PD  CYT ++  +    +   A +L +++   G      TYN 
Sbjct: 267 GKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPKADKLFDELLLLGLAPDVYTYNV 326

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
            + GLC    +  +L+++  + K G +PNV TY+ L++   K   +  A  L  ++   G
Sbjct: 327 YINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIKALVKAGDLSRAKTLWKEMETNG 386

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS---------LC 285
              N  +++++++           IE+   + A G      + N+ ++S         LC
Sbjct: 387 VNRNSHTFDIMISAY---------IEVDEVVCAHGLLEEAFNMNVFVKSSRIEEVISRLC 437

Query: 286 YEGRWEEANGLLAEM 300
            +G  ++A  LLA +
Sbjct: 438 EKGLMDQAVELLAHL 452


>AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397393
           FORWARD LENGTH=510
          Length = 510

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 36/382 (9%)

Query: 105 LLYDLCKSNKARKAVRVME-MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           L  +L KS+K  + + V   M      IPD   Y+ L++ + ++G    AM L  +++  
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 162

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G +     YN L+           +  L  R   K L+              K RG  + 
Sbjct: 163 GCRPDASVYNALI-----------TAHLHTRDKAKALE--------------KVRGYLDK 197

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           MK ++       +PN+V+YN+LL    + G+ +    LF+DL     SP V ++N ++ +
Sbjct: 198 MKGIERC-----QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDA 252

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
               G  +E   +L  M   +  P ++T+N+LI S       E+  +    + RS    T
Sbjct: 253 YGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML---CEQGKVQEAFFI 400
             ++N +I    K   +D       +M    Y P+  TY  + M+   C  G V  A  I
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYC--GSVSRAREI 370

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F+ +G             ++ + CR G    A ++ +  +     PD+ TY  L +   +
Sbjct: 371 FEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTK 430

Query: 461 EGMLDEALEIFRILEENDYMPD 482
             M ++   + + +E++  +P+
Sbjct: 431 ADMKEQVQILMKKMEKDGIVPN 452



 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD    ++L+  + K  + R A+ +   +  SG  PDA+ Y  L+       +   A++ 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEK 190

Query: 157 VEKV--EEHGF---QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           V     +  G    Q   VTYN L++     GK++Q   L   L    + P+V+T++ ++
Sbjct: 191 VRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           +   K   + E   +L  + +   +P+++++NVL+    K+   E   + F+ L      
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEK 310

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P++ ++N ++ +       ++A  +  +M++ +  PS +TY  +I      G   +A E+
Sbjct: 311 PTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREI 370

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
            +E+  S   + A++ N ++   C+ G      +        R  P+  TY
Sbjct: 371 FEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTY 421



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII-ARLCKEGK---VDL 362
           P    Y+ LI+ +   G+T  A  +  EM  SG    A+ YN +I A L    K   ++ 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEK 190

Query: 363 VVQCLDQMI-CRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
           V   LD+M    R  PN  TYN +     + GKV +   +F+ L      P       V+
Sbjct: 191 VRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
               + G       +L  M      PD  T++ L+    ++   ++  + F+ L  +   
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEK 310

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           P +  +N++I+ + K +  D +  +F++M +   +P+ ITY  ++
Sbjct: 311 PTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMI 355



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 358 GKVDLVVQCLDQMIC----RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
           GK D  +QCL+        R Y P+ G Y+  I+++ ++G+ + A ++F  + N    P 
Sbjct: 108 GKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPD 167

Query: 413 HDYCKNVISMLCRKGNTYPAFQM-------LYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
                 +I+      +   A +        +  + +C   P+  TY+ L+R   + G +D
Sbjct: 168 ASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERC--QPNVVTYNILLRAFAQSGKVD 225

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           +   +F+ L+ +   PD+  +N ++  + K         +  RM +  C P+ IT+ +L+
Sbjct: 226 QVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLI 285

Query: 526 EGLAFENELDIAAGLMKEL 544
           +    + E +      K L
Sbjct: 286 DSYGKKQEFEKMEQTFKSL 304


>AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397578
           FORWARD LENGTH=563
          Length = 563

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 36/382 (9%)

Query: 105 LLYDLCKSNKARKAVRVME-MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           L  +L KS+K  + + V   M      IPD   Y+ L++ + ++G    AM L  +++  
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 162

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G +     YN L+           +  L  R   K L+              K RG  + 
Sbjct: 163 GCRPDASVYNALI-----------TAHLHTRDKAKALE--------------KVRGYLDK 197

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           MK ++       +PN+V+YN+LL    + G+ +    LF+DL     SP V ++N ++ +
Sbjct: 198 MKGIERC-----QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDA 252

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
               G  +E   +L  M   +  P ++T+N+LI S       E+  +    + RS    T
Sbjct: 253 YGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPT 312

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML---CEQGKVQEAFFI 400
             ++N +I    K   +D       +M    Y P+  TY  + M+   C  G V  A  I
Sbjct: 313 LPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYC--GSVSRAREI 370

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F+ +G             ++ + CR G    A ++ +  +     PD+ TY  L +   +
Sbjct: 371 FEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTK 430

Query: 461 EGMLDEALEIFRILEENDYMPD 482
             M ++   + + +E++  +P+
Sbjct: 431 ADMKEQVQILMKKMEKDGIVPN 452



 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD    ++L+  + K  + R A+ +   +  SG  PDA+ Y  L+       +   A++ 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEK 190

Query: 157 VEKV--EEHGF---QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           V     +  G    Q   VTYN L++     GK++Q   L   L    + P+V+T++ ++
Sbjct: 191 VRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           +   K   + E   +L  + +   +P+++++NVL+    K+   E   + F+ L      
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEK 310

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P++ ++N ++ +       ++A  +  +M++ +  PS +TY  +I      G   +A E+
Sbjct: 311 PTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREI 370

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
            +E+  S   + A++ N ++   C+ G      +        R  P+  TY
Sbjct: 371 FEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTY 421



 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII-ARLCKEGK---VDL 362
           P    Y+ LI+ +   G+T  A  +  EM  SG    A+ YN +I A L    K   ++ 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEK 190

Query: 363 VVQCLDQMI-CRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
           V   LD+M    R  PN  TYN +     + GKV +   +F+ L      P       V+
Sbjct: 191 VRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
               + G       +L  M      PD  T++ L+    ++   ++  + F+ L  +   
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEK 310

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           P +  +N++I+ + K +  D +  +F++M +   +P+ ITY  ++
Sbjct: 311 PTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMI 355



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 358 GKVDLVVQCLDQMIC----RRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
           GK D  +QCL+        R Y P+ G Y+  I+++ ++G+ + A ++F  + N    P 
Sbjct: 108 GKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPD 167

Query: 413 HDYCKNVISMLCRKGNTYPAFQM-------LYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
                 +I+      +   A +        +  + +C   P+  TY+ L+R   + G +D
Sbjct: 168 ASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERC--QPNVVTYNILLRAFAQSGKVD 225

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
           +   +F+ L+ +   PD+  +N ++  + K         +  RM +  C P+ IT+ +L+
Sbjct: 226 QVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLI 285

Query: 526 EGLAFENELDIAAGLMKEL 544
           +    + E +      K L
Sbjct: 286 DSYGKKQEFEKMEQTFKSL 304


>AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:20901364-20902560 FORWARD
           LENGTH=398
          Length = 398

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 163/364 (44%), Gaps = 18/364 (4%)

Query: 126 VGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKL 185
           V + I P     T LVN    R       +  +  E   F+T    Y+  V+ L +  +L
Sbjct: 33  VTAAISPPQKSLTSLVN--GERNPKRIVEKFKKACESERFRTNIAVYDRTVRRLVAAKRL 90

Query: 186 NQSLQLLDR------LTKKGLKPNVFTYSFLLEGAYKERGVDE-AMKLLDDIIARGGEPN 238
           +   ++L+       ++K+G    + +        Y + G+ E A K+ +++  R  + +
Sbjct: 91  HYVEEILEEQKKYRDMSKEGFAARIISL-------YGKAGMFENAQKVFEEMPNRDCKRS 143

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAK-GFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           ++S+N LL+      + +   ELF +LP K    P +VSYN L+++LC +    EA  LL
Sbjct: 144 VLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALL 203

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            E++ + L P +VT+N L+ S  L G+ E   E+  +M      +   +YN  +  L  E
Sbjct: 204 DEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANE 263

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
            K   +V    ++      P+  ++NA I     +GK+ EA   ++ +      P     
Sbjct: 264 AKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATF 323

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
             ++  +C+ G+   A ++  E     +     T   LV  + +    +EA EI +I + 
Sbjct: 324 ALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAKT 383

Query: 477 NDYM 480
           ND++
Sbjct: 384 NDFL 387



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           KPD+     L+  LC+ +   +AV +++ I   G+ PD   +  L+     +G      +
Sbjct: 177 KPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEE 236

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           +  K+ E        TYN  + GL +  K  + + L   L   GLKP+VF+++ ++ G+ 
Sbjct: 237 IWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSI 296

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
            E  +DEA     +I+  G  P+  ++ +LL  +CK G  E AIELF++  +K +     
Sbjct: 297 NEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQT 356

Query: 276 SYNILLRSLCYEGRWEEANGLL 297
           +   L+  L    + EEA  ++
Sbjct: 357 TLQQLVDELVKGSKREEAEEIV 378



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 128/299 (42%), Gaps = 42/299 (14%)

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           +RD+  +GF+  ++S           G +E A  +  EM   D   SV+++N L+++  L
Sbjct: 103 YRDMSKEGFAARIISL------YGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRL 156

Query: 322 HGRTEQAFEVLDEMT-RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
             + +   E+ +E+  +        SYN +I  LC++  +   V  LD++  +   P+  
Sbjct: 157 SKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIV 216

Query: 381 TYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
           T+N + +                           Y K    +           ++  +M 
Sbjct: 217 TFNTLLL-------------------------SSYLKGQFEL---------GEEIWAKMV 242

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           +     D  TY++ + G+  E    E + +F  L+ +   PD+ ++NA+I G     + D
Sbjct: 243 EKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMD 302

Query: 501 LSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELY-MREVLSRSTVDRL 558
            +   ++ +V  G  P++ T+ +L+  +    + + A  L KE +  R ++ ++T+ +L
Sbjct: 303 EAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQL 361



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 43/280 (15%)

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE-EDLSPSVVTYNILITSLSLHGRT--- 325
           F  ++  Y+  +R L    R      +L E  +  D+S       I+    SL+G+    
Sbjct: 70  FRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARII----SLYGKAGMF 125

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR-RYSPNEGTYNA 384
           E A +V +EM       +  S+N +++      K D+V +  +++  +    P+  +YN 
Sbjct: 126 ENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNT 185

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           +                                  I  LC K +   A  +L E+   G 
Sbjct: 186 L----------------------------------IKALCEKDSLPEAVALLDEIENKGL 211

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
            PD  T+++L+     +G  +   EI+  + E +   DI  YNA +LG     ++   + 
Sbjct: 212 KPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVN 271

Query: 505 IFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +F  +   G  P+  ++  ++ G   E ++D A    KE+
Sbjct: 272 LFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEI 311


>AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27721190-27724165 FORWARD
           LENGTH=991
          Length = 991

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 162/363 (44%), Gaps = 7/363 (1%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T T+NTL+      G+LN +  L   + K G+  +  T++ ++        + EA  LL 
Sbjct: 305 TSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLK 364

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +  +G  P+  +YN+LL+     G  E A+E +R +   G  P  V++  +L  LC   
Sbjct: 365 KMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRK 424

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
              E   ++AEMD   +     +  +++      G   QA + L E  +    +++T+  
Sbjct: 425 MVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQA-KALFERFQLDCVLSSTTLA 483

Query: 349 PIIARLCKEG---KVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE-AFFIFQSL 404
            +I    ++G   + + V      M  +R    E  YN +     + K+ E A  +F+ +
Sbjct: 484 AVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLE--YNVMIKAYGKAKLHEKALSLFKGM 541

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
            N+   P      ++  ML        A ++L EM   G  P   TY++++    R G+L
Sbjct: 542 KNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLL 601

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            +A++++  +E+    P+   Y +LI GF +    + +I+ F+ M   G   N I  T L
Sbjct: 602 SDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSL 661

Query: 525 VEG 527
           ++ 
Sbjct: 662 IKA 664



 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 203/468 (43%), Gaps = 12/468 (2%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           GQ+ DV +   ++    K+    KA+ + + +   G  PD   Y  L   L     +  A
Sbjct: 510 GQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEA 569

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            +++ ++ + G + G  TY  ++      G L+ ++ L + + K G+KPN   Y  L+ G
Sbjct: 570 QRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLING 629

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             +   V+EA++    +   G + N +    L+    K G  E+A  ++  +      P 
Sbjct: 630 FAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPD 689

Query: 274 VVSYNILLRSLCYE-GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           V + N +L SLC + G   EA  +   + E+  +  V+++  ++      G  ++A EV 
Sbjct: 690 VAASNSML-SLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVA 747

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC-RRYSPNEGTYNAIAMLCEQ 391
           +EM  SG     TS+N ++A    +G++    +   +M+  R+   + GT+  +  L ++
Sbjct: 748 EEMRESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKK 807

Query: 392 GKV-QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
           G V  EA    Q+  N+   P+        ++    G    A +   E+T      + + 
Sbjct: 808 GGVPSEAVSQLQTAYNEAK-PLATPAITA-TLFSAMGLYAYALESCQELTSGEIPREHFA 865

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           Y++++      G +D AL+ +  ++E    PDI     L+  + K    +    +  R+ 
Sbjct: 866 YNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLT 925

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM-----REVLSRS 553
                P++  +  + +     N  D+A  + KE+ +     RE  SRS
Sbjct: 926 FGELEPSQSLFKAVRDAYVSANRQDLADVVKKEMSIAFEAERECSSRS 973



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/481 (20%), Positives = 190/481 (39%), Gaps = 49/481 (10%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K  RLNDA      M+  G   D      +++         +A  +++ +   GI 
Sbjct: 313 DLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGIS 372

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD   Y  L++     G+I  A++   K+ + G    TVT+  ++  LC    + +   +
Sbjct: 373 PDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAV 432

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD-----------------DIIARG 234
           +  + +  ++ +  +   +++    E  V +A  L +                 D+ A  
Sbjct: 433 IAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEK 492

Query: 235 G------------------EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           G                    +++ YNV++    K    E A+ LF+ +  +G  P   +
Sbjct: 493 GLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECT 552

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN L + L      +EA  +LAEM +    P   TY  +I S    G    A ++ + M 
Sbjct: 553 YNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAME 612

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQ 395
           ++G       Y  +I    + G V+  +Q    M       N     + I    + G ++
Sbjct: 613 KTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLE 672

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPA---FQMLYEMTKCGFTPDSYTYS 452
           EA  ++  + + +  P      +++S+    G    A   F  L E   C    D  +++
Sbjct: 673 EARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNALREKGTC----DVISFA 728

Query: 453 SLV---RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           +++   +GM   GMLDEA+E+   + E+  + D  ++N ++  +    +     E+F  M
Sbjct: 729 TMMYLYKGM---GMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSECCELFHEM 785

Query: 510 V 510
           +
Sbjct: 786 L 786



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/459 (21%), Positives = 186/459 (40%), Gaps = 16/459 (3%)

Query: 95  QKPDVAQATQLLYDL-CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           +KP +      L DL  K+ +   A  +   ++ SG+  D   +  +++     G++  A
Sbjct: 300 RKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEA 359

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             L++K+EE G    T TYN L+      G +  +L+   ++ K GL P+  T+  +L  
Sbjct: 360 ESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHI 419

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             + + V E   ++ ++       +  S  V++     EG    A  LF          S
Sbjct: 420 LCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSS 479

Query: 274 VVSYNILLRSLCYEGRWEEANGLL-AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
             +   ++     +G W EA  +   + +       V+ YN++I +       E+A  + 
Sbjct: 480 -TTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLF 538

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQ 391
             M   G      +YN +   L     VD   + L +M+     P   TY A IA     
Sbjct: 539 KGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRL 598

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G + +A  +++++      P      ++I+     G    A Q    M + G   +    
Sbjct: 599 GLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVL 658

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI-----EIF 506
           +SL++   + G L+EA  ++  +++++  PD+   N++ L  C     DL I      IF
Sbjct: 659 TSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSM-LSLC----ADLGIVSEAESIF 713

Query: 507 QRMVNKGC--VPNEITYTILVEGLAFENELDIAAGLMKE 543
             +  KG   V +  T   L +G+   +E    A  M+E
Sbjct: 714 NALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRE 752



 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 163/432 (37%), Gaps = 56/432 (12%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
            + YN +++ L   GK ++       +   G+ P   TY  L++   K   V EA+  + 
Sbjct: 145 VIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLWIK 204

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR---------------DLPAKGFSPS 273
            +  R   P+ V+   ++      G  + A   F+               D P  G + S
Sbjct: 205 HMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDDFPKNGSAQS 264

Query: 274 VVSYNILLRSLCYE-GRWEEANGLLAEMDEEDLSPS----VVTYNILITSLSLHGRTEQA 328
            V+    L    ++ G        L      D SP       T+N LI      GR   A
Sbjct: 265 PVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDA 324

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAM 387
             +  EM +SG  +   ++N +I      G +      L +M  +  SP+  TYN  +++
Sbjct: 325 ANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSL 384

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
             + G ++ A   ++ +      P     + V+ +LC++        ++ EM +     D
Sbjct: 385 HADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRID 444

Query: 448 SYTYSSLVRGMCREGMLDEALEIFR------ILEENDYMPDID----------------- 484
            ++   +++    EG++ +A  +F       +L        ID                 
Sbjct: 445 EHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYG 504

Query: 485 ------------NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
                        YN +I  + K +  + ++ +F+ M N+G  P+E TY  L + LA  +
Sbjct: 505 KRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVD 564

Query: 533 ELDIAAGLMKEL 544
            +D A  ++ E+
Sbjct: 565 LVDEAQRILAEM 576



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 114/298 (38%), Gaps = 40/298 (13%)

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           PN++ YN++L  L + G+ ++    + ++   G  P+  +Y +L+      G  +EA   
Sbjct: 143 PNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLW 202

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           +  M +    P  VT   ++      G  ++A                   +      C 
Sbjct: 203 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRA-------------------DRFFKGWCA 243

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAF-------------FIFQS 403
            GKVDL +  +D        P  G+  +   L +Q    E F             F   S
Sbjct: 244 -GKVDLDLDSIDDF------PKNGSAQSPVNL-KQFLSMELFKVGARNPIEKSLHFASGS 295

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
             + +   +      +I +  + G    A  +  EM K G   D+ T+++++      G 
Sbjct: 296 DSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGH 355

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
           L EA  + + +EE    PD   YN L+         + ++E ++++   G  P+ +T+
Sbjct: 356 LSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTH 413


>AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:18897510-18899645 REVERSE LENGTH=711
          Length = 711

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 166/386 (43%), Gaps = 18/386 (4%)

Query: 31  VLN-LRTFSLNKGFSRVLASAQISISPKDSIF---TLPNWRVGKNDQKSKEVRLNDAFLH 86
           VLN LR +     F   + S   S+ P ++IF   T+ + R G+  Q  +E+ L      
Sbjct: 159 VLNSLREWQKTHTFFNWVKSK--SLFPMETIFYNVTMKSLRFGRQFQLIEEMALE----- 211

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
              MV  G + D    + ++    + N   KA+   E +  +G++PD   Y+ +++   +
Sbjct: 212 ---MVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSK 268

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
            G +   + L E+    G++   + ++ L K     G  +    +L  +    +KPNV  
Sbjct: 269 SGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVV 328

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ LLE   +      A  L ++++  G  PN  +   L+    K     DA++L+ ++ 
Sbjct: 329 YNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMK 388

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRT 325
           AK +    + YN LL      G  EEA  L  +M E     P   +Y  ++      G+ 
Sbjct: 389 AKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKA 448

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE---GTY 382
           E+A E+ +EM ++G  V       ++  L K  ++D VV   D  I R   P++   G  
Sbjct: 449 EKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCL 508

Query: 383 NAIAMLCEQGKVQEAFFIFQSLGNKQ 408
            ++  LCE  +  E         NK+
Sbjct: 509 LSVMALCESSEDAEKVMACLERANKK 534



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 156/359 (43%), Gaps = 43/359 (11%)

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT----KKGLKPNVFTYSFLLEGAYKERGV 220
           F   T+ YN  +K L    +  +  QL++ +     K G++ +  TYS ++  A +    
Sbjct: 182 FPMETIFYNVTMKSL----RFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLY 237

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
           ++A++  + +   G  P+ V+Y+ +L    K G+ E+ + L+    A G+ P  +++++L
Sbjct: 238 NKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVL 297

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
            +     G ++    +L EM   D+ P+VV YN L+ ++   G+   A  + +EM  +G 
Sbjct: 298 GKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGL 357

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFF 399
                +   ++    K       +Q  ++M  +++  +   YN +  +C   G  +EA  
Sbjct: 358 TPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAER 417

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
           +F  +                S+ CR                    PD+++Y++++    
Sbjct: 418 LFNDMKE--------------SVQCR--------------------PDNFSYTAMLNIYG 443

Query: 460 REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
             G  ++A+E+F  + +     ++     L+    K +R D  + +F   + +G  P++
Sbjct: 444 SGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDD 502



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 147/352 (41%), Gaps = 44/352 (12%)

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP-SVVSYNIL 280
           E + LLD+I      PN  +  ++L  L +  +T      F  + +K   P   + YN+ 
Sbjct: 139 EFLSLLDEI---PHPPNRDNALLVLNSLREWQKTHT---FFNWVKSKSLFPMETIFYNVT 192

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           ++SL +  +++    +  EM ++ +    +TY+ +IT         +A E  + M ++G 
Sbjct: 193 MKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGL 252

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFF 399
                +Y+ I+    K GKV+ V+   ++ +   + P+   ++ +  M  E G      +
Sbjct: 253 MPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRY 312

Query: 400 IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR--- 456
           + Q + +    P       ++  + R G    A  +  EM + G TP+  T ++LV+   
Sbjct: 313 VLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYG 372

Query: 457 -------------------------------GMCRE-GMLDEALEIFRILEEN-DYMPDI 483
                                           MC + G+ +EA  +F  ++E+    PD 
Sbjct: 373 KARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDN 432

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
            +Y A++  +    + + ++E+F+ M+  G   N +  T LV+ L     +D
Sbjct: 433 FSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRID 484


>AT3G46610.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:17160224-17162221 REVERSE
           LENGTH=665
          Length = 665

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 200/465 (43%), Gaps = 59/465 (12%)

Query: 111 KSNKARKAVRVMEMI------VGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           K  + + AV V++ +       G  I P+   Y  L+  +  RG  G A ++++ +EE G
Sbjct: 158 KDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAM--RG-FGEAEKILKDMEEEG 214

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS---------------- 208
                VTYNTL+      G+  ++L +LD   +KG +PN  TYS                
Sbjct: 215 IVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTALLVYRRMEDGMGAL 274

Query: 209 -FLLE--GAYKER------GVDEAMKL--LDDIIARGGEPNLVSYNVLLTGLCKEGR-TE 256
            F +E    Y +R      G D   +   L++ I R      + Y V+   L K+   T 
Sbjct: 275 EFFVELREKYAKREIGNDVGYDWEFEFVKLENFIGR------ICYQVMRRWLVKDDNWTT 328

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
             ++L   + + G  PS   +  L+ +   E  +     L   + E     S+   N LI
Sbjct: 329 RVLKLLNAMDSAGVRPSREEHERLIWACTREEHYIVGKELYKRIRERFSEISLSVCNHLI 388

Query: 317 TSLSLHGRTEQAFEVLDEMTRSG-------FNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
             +    +   A E+ +++   G       + +  + +N +++   K G     V+ L++
Sbjct: 389 WLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNK 448

Query: 370 MICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
           M  +   P    +NA+ + C +  +   A  IF+++ +    P       ++S L  KG 
Sbjct: 449 MEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSAL-EKGK 507

Query: 429 TY-PAFQMLYEMTKCGFTPDSYTYS---SLVRGMCREGMLDEALEIFRILEENDYMPDID 484
            Y  AF++   M K G  P+ Y Y+   S++ G  +  +LD  L   + +      P + 
Sbjct: 508 LYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLL---KEMASKGIEPSVV 564

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
            +NA+I G  +   + ++ E F RM ++   PNEITY +L+E LA
Sbjct: 565 TFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALA 609



 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 121/255 (47%), Gaps = 7/255 (2%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFL-------CRRGNIGYAMQL 156
            L++ + K+ K   A+ + E ++  G  P+   Y  +V+          +RG   + ++L
Sbjct: 386 HLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRL 445

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           + K+E+ G +     +N ++       +   ++Q+   +   G KP V +Y  LL    K
Sbjct: 446 LNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEK 505

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
            +  DEA ++ + +I  G EPNL +Y  + + L  + +      L +++ +KG  PSVV+
Sbjct: 506 GKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVT 565

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           +N ++      G    A      M  E++ P+ +TY +LI +L+   +   A+E+  +  
Sbjct: 566 FNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQ 625

Query: 337 RSGFNVTATSYNPII 351
             G  +++  Y+ ++
Sbjct: 626 NEGLKLSSKPYDAVV 640



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 179/411 (43%), Gaps = 47/411 (11%)

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKG------LKPNVFTYSFLLEGAYKERGVDEAMKLL 227
            ++KG     +L  ++ ++D L +K       + PN+F Y+ LL GA   RG  EA K+L
Sbjct: 151 AMIKGFGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLL-GAM--RGFGEAEKIL 207

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
            D+   G  PN+V+YN L+    +EG    A+ +      KGF P+ ++Y+  L  L Y 
Sbjct: 208 KDMEEEGIVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTAL--LVYR 265

Query: 288 GRWEEANGLL---AEMDEEDLSPSV---VTYNILITSLSLH---GR-------------- 324
            R E+  G L    E+ E+     +   V Y+     + L    GR              
Sbjct: 266 -RMEDGMGALEFFVELREKYAKREIGNDVGYDWEFEFVKLENFIGRICYQVMRRWLVKDD 324

Query: 325 --TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
             T +  ++L+ M  +G   +   +  +I    +E    +V + L + I  R+S    + 
Sbjct: 325 NWTTRVLKLLNAMDSAGVRPSREEHERLIWACTREEHY-IVGKELYKRIRERFSEISLSV 383

Query: 383 --NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH-------DYCKNVISMLCRKGNTYPAF 433
             + I ++ +  K   A  I++ L ++   P +        +   ++S   ++G      
Sbjct: 384 CNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGV 443

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           ++L +M   G  P    +++++    +      A++IF+ + +N   P + +Y AL+   
Sbjct: 444 RLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSAL 503

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            K +  D +  ++  M+  G  PN   YT +   L  + + ++   L+KE+
Sbjct: 504 EKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEM 554



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 107/234 (45%), Gaps = 7/234 (2%)

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY-------NTLVKGLCSHGKLNQSLQL 191
           HL+  + +      A+++ E + + G +   ++Y       N L+      G     ++L
Sbjct: 386 HLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRL 445

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
           L+++  KGLKP    ++ +L    K      A+++   ++  G +P ++SY  LL+ L K
Sbjct: 446 LNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEK 505

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
               ++A  ++  +   G  P++ +Y  +   L  + ++   + LL EM  + + PSVVT
Sbjct: 506 GKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVT 565

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
           +N +I+  + +G +  A+E    M          +Y  +I  L  + K  L  +
Sbjct: 566 FNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYE 619



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 135/323 (41%), Gaps = 11/323 (3%)

Query: 149 NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN-QSLQLLDRLTKKGLKPNVFTY 207
           ++GY  +  E V+   F  G + Y  + + L        + L+LL+ +   G++P+   +
Sbjct: 292 DVGYDWEF-EFVKLENF-IGRICYQVMRRWLVKDDNWTTRVLKLLNAMDSAGVRPSREEH 349

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
             L+    +E       +L   I  R  E +L   N L+  + K  +   A+E++ DL  
Sbjct: 350 ERLIWACTREEHYIVGKELYKRIRERFSEISLSVCNHLIWLMGKAKKWWAALEIYEDLLD 409

Query: 268 KGFSPSVVSY-------NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +G  P+ +SY       NILL +    G W     LL +M+++ L P    +N ++ + S
Sbjct: 410 EGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACS 469

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
               T  A ++   M  +G   T  SY  +++ L K    D   +  + MI     PN  
Sbjct: 470 KASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLY 529

Query: 381 TYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
            Y  +A +L  Q K      + + + +K   P       VIS   R G +  A++  + M
Sbjct: 530 AYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRM 589

Query: 440 TKCGFTPDSYTYSSLVRGMCREG 462
                 P+  TY  L+  +  + 
Sbjct: 590 KSENVEPNEITYEMLIEALANDA 612



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 88  EYMVGKGQKPD-------VAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           E ++ +G +P+       V+    LL    K    R  VR++  +   G+ P    +  +
Sbjct: 405 EDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAV 464

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKL-NQSLQLLDRLTKKG 199
           +    +      A+Q+ + + ++G +   ++Y  L+  L   GKL +++ ++ + + K G
Sbjct: 465 LVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSAL-EKGKLYDEAFRVWNHMIKVG 523

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           ++PN++ Y+ +      ++  +    LL ++ ++G EP++V++N +++G  + G +  A 
Sbjct: 524 IEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAY 583

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
           E F  + ++   P+ ++Y +L+ +L  + +   A  L  +   E L  S   Y+ ++ S 
Sbjct: 584 EWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQNEGLKLSSKPYDAVVKSA 643

Query: 320 SLHGRT 325
             +G T
Sbjct: 644 ETYGAT 649



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 223 AMKLLDDIIARGGEPNLVSY-------NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           A+++ +D++  G EPN +SY       N+LL+   K G     + L   +  KG  P   
Sbjct: 400 ALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKRGIWRWGVRLLNKMEDKGLKPQRR 459

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            +N +L +         A  +   M +    P+V++Y  L+++L      ++AF V + M
Sbjct: 460 HWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHM 519

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKV 394
            + G      +Y  + + L  + K +L+   L +M  +   P+  T+NA+   C + G  
Sbjct: 520 IKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLS 579

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
             A+  F  + ++   P     + +I  L        A+++  +    G    S  Y ++
Sbjct: 580 GVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQNEGLKLSSKPYDAV 639

Query: 455 VR 456
           V+
Sbjct: 640 VK 641



 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCR 146
           L  M  KG KP       +L    K+++   A+++ + +V +G  P    Y  L++ L +
Sbjct: 446 LNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEK 505

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
                 A ++   + + G +     Y T+   L    K N    LL  +  KG++P+V T
Sbjct: 506 GKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVT 565

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           ++ ++ G  +      A +    + +   EPN ++Y +L+  L  + +   A EL     
Sbjct: 566 FNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALANDAKPRLAYELHVKAQ 625

Query: 267 AKGFSPSVVSYNILLRS 283
            +G   S   Y+ +++S
Sbjct: 626 NEGLKLSSKPYDAVVKS 642



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK      A    + MV  G+KP V     LL  L K     +A RV   ++  GI P+ 
Sbjct: 469 SKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNL 528

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             YT + + L  +        L++++   G +   VT+N ++ G   +G    + +   R
Sbjct: 529 YAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHR 588

Query: 195 LTKKGLKPNVFTYSFLLEG 213
           +  + ++PN  TY  L+E 
Sbjct: 589 MKSENVEPNEITYEMLIEA 607


>AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1955959-1959051 FORWARD
           LENGTH=1030
          Length = 1030

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 151/364 (41%), Gaps = 37/364 (10%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           +G   D   +T L++   +   IG  + + EK+ + GF+     YN +++ LC  G+ + 
Sbjct: 218 NGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDL 277

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLT 247
           +L+    + +KG+   + TY  LL+   K   VD    + DD++         ++  LL 
Sbjct: 278 ALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLK 337

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
             C  G+ ++A+EL R+L  K        + IL++ LC   R  +A  ++  M    L  
Sbjct: 338 SFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDD 397

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCL 367
           S V Y I+I+         +A E  + + +SG     ++Y  I+  L K  + +      
Sbjct: 398 SNV-YGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLF 456

Query: 368 DQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
           ++MI     P+     A +A    Q +V EA+ +F S+  K                   
Sbjct: 457 NEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEK------------------- 497

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
                           G  P   +YS  V+ +CR    DE ++IF  +  +  +   D +
Sbjct: 498 ----------------GIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIF 541

Query: 487 NALI 490
           + +I
Sbjct: 542 SWVI 545



 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/486 (21%), Positives = 207/486 (42%), Gaps = 64/486 (13%)

Query: 91  VGKGQKPDVAQATQ-----------------LLYDLCKSNKARKAVRVMEMIVGSGIIPD 133
           + K +K DV Q+                   LL   C S K ++A+ ++  +    +  D
Sbjct: 304 IAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLD 363

Query: 134 AACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLD 193
           A  +  LV  LCR   +  A+++V+ ++        V Y  ++ G      ++++L+  +
Sbjct: 364 AKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNV-YGIIISGYLRQNDVSKALEQFE 422

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            + K G  P V TY+ +++  +K +  ++   L +++I  G EP+ V+   ++ G   + 
Sbjct: 423 VIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQN 482

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           R  +A ++F  +  KG  P+  SY+I ++ LC   R++E   +  +M    +      ++
Sbjct: 483 RVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFS 542

Query: 314 ILITSLSLHGRTEQAFEV----------LDEMTRSG---FNVT---ATSYNPIIARLCKE 357
            +I+S+  +G  E+   +           DE+  SG   F+        YN    +L ++
Sbjct: 543 WVISSMEKNGEKEKIHLIKEIQKRSNSYCDELNGSGKAEFSQEEELVDDYN--CPQLVQQ 600

Query: 358 GKVDLVVQCLDQM----ICRRYSPN---EGTYNA------------IAMLCEQGKVQ-EA 397
             +   +  +D+M    ICR  S +   E T  A            +  +    K+Q  A
Sbjct: 601 SALPPALSAVDKMDVQEICRVLSSSRDWERTQEALEKSTVQFTPELVVEVLRHAKIQGNA 660

Query: 398 FFIFQSLGNKQNCPMHD---YCKNVISMLCRKGNTYPAFQ-MLYEMTKCGFTPDSYTYSS 453
              F S   K+N   H+   Y  ++    C  G  +   + + YEM + G      T++ 
Sbjct: 661 VLRFFSWVGKRNGYKHNSEAYNMSIKVAGC--GKDFKQMRSLFYEMRRQGCLITQDTWAI 718

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC--KYQRTDLSIEIFQRMVN 511
           ++    R G+ + A+  F+ +++   +P    +  LI   C  K +  + +   F+ M+ 
Sbjct: 719 MIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIR 778

Query: 512 KGCVPN 517
            G VP+
Sbjct: 779 SGFVPD 784



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/393 (19%), Positives = 171/393 (43%), Gaps = 13/393 (3%)

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
           ++ GF      YNT++        L+   +L+  + K G   ++ T++ L+    K + +
Sbjct: 181 QKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKI 240

Query: 221 DEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
            + + + + +   G E +  +YN+++  LC  GR + A+E ++++  KG +  + +Y +L
Sbjct: 241 GKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKML 300

Query: 281 LRSLCYEGRWEEANGL------LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           L  +    + +    +      + E+ E D       +  L+ S  + G+ ++A E++ E
Sbjct: 301 LDCIAKSEKVDVVQSIADDMVRICEISEHD------AFGYLLKSFCVSGKIKEALELIRE 354

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           +      + A  +  ++  LC+  ++   ++ +D M  R+   +      I+    Q  V
Sbjct: 355 LKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDV 414

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSL 454
            +A   F+ +      P       ++  L +         +  EM + G  PDS   +++
Sbjct: 415 SKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAV 474

Query: 455 VRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGC 514
           V G   +  + EA ++F  +EE    P   +Y+  +   C+  R D  I+IF +M     
Sbjct: 475 VAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKI 534

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           V  +  ++ ++  +    E +    L+KE+  R
Sbjct: 535 VIRDDIFSWVISSMEKNGEKE-KIHLIKEIQKR 566



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 1/239 (0%)

Query: 90   MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
            M+  G  PD       L  LC+    + A   ++ +   G  P    Y+  +  LCR G 
Sbjct: 776  MIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCRIGK 834

Query: 150  IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
            +  A+  +   E         TY ++V GL   G L ++L  ++ + + G KP V  Y+ 
Sbjct: 835  LEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTS 894

Query: 210  LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
            L+   +KE+ +++ ++    +     EP++V+Y  ++ G    G+ E+A   FR++  +G
Sbjct: 895  LIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERG 954

Query: 270  FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
             SP   +Y+  +  LC   + E+A  LL+EM ++ ++PS + +  +   L+  G+ + A
Sbjct: 955  TSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLA 1013



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 3/284 (1%)

Query: 81   NDAFLHLEYMVGKGQKPDVAQATQLLYDLC--KSNKARKAVRVMEMIVGSGIIPDAACYT 138
            N A    + M   G  P  +    L+  LC  K     +A R    ++ SG +PD     
Sbjct: 730  NIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGFVPDRELVQ 789

Query: 139  HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
              +  LC  GN   A   ++ + + GF   TV Y+  ++ LC  GKL ++L  L     +
Sbjct: 790  DYLGCLCEVGNTKDAKSCLDSLGKIGFPV-TVAYSIYIRALCRIGKLEEALSELASFEGE 848

Query: 199  GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
                + +TY  ++ G  +   + +A+  ++ +   G +P +  Y  L+    KE + E  
Sbjct: 849  RSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKV 908

Query: 259  IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS 318
            +E  + +  +   PSVV+Y  ++      G+ EEA      M+E   SP   TY+  I  
Sbjct: 909  LETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINC 968

Query: 319  LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
            L    ++E A ++L EM   G   +  ++  +   L +EGK DL
Sbjct: 969  LCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDL 1012



 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 10/384 (2%)

Query: 162  EHGFQTGTVTYN-TLVKGLCSHGKL--NQSLQLLDRLTKK-GLKPNVFTYSFLLEGAYKE 217
            +   +  TV +   LV  +  H K+  N  L+    + K+ G K N   Y+  ++ A   
Sbjct: 632  QEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCG 691

Query: 218  RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
            +   +   L  ++  +G      ++ +++    + G T  AI  F+++   G  PS  ++
Sbjct: 692  KDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTF 751

Query: 278  NILLRSLC-YEGR-WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
              L+  LC  +GR  EEA     EM      P        +  L   G T+ A   LD +
Sbjct: 752  KCLITVLCEKKGRNVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSL 811

Query: 336  TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKV 394
             + GF VT  +Y+  I  LC+ GK++  +  L      R   ++ TY +I   L ++G +
Sbjct: 812  GKIGFPVT-VAYSIYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDL 870

Query: 395  QEAFFIFQSLGNKQNCP-MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
            Q+A     S+      P +H Y  ++I    ++       +   +M      P   TY++
Sbjct: 871  QKALDKVNSMKEIGTKPGVHVYT-SLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTA 929

Query: 454  LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
            ++ G    G ++EA   FR +EE    PD   Y+  I   C+  +++ ++++   M++KG
Sbjct: 930  MICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKG 989

Query: 514  CVPNEITYTILVEGLAFENELDIA 537
              P+ I +  +  GL  E + D+A
Sbjct: 990  IAPSTINFRTVFYGLNREGKHDLA 1013



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 146/362 (40%), Gaps = 40/362 (11%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G   D+   T L+    K+ K  K + V E +  SG   DA  Y  ++  LC  G 
Sbjct: 215 MEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGR 274

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNT----------------------------------- 174
              A++  +++ E G   G  TY                                     
Sbjct: 275 GDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGY 334

Query: 175 LVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           L+K  C  GK+ ++L+L+  L  K +  +   +  L++G  +   + +A++++ DI+ R 
Sbjct: 335 LLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIV-DIMKRR 393

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
              +   Y ++++G  ++     A+E F  +   G  P V +Y  +++ L    ++E+  
Sbjct: 394 KLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGC 453

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            L  EM E  + P  V    ++       R  +A++V   M   G   T  SY+  +  L
Sbjct: 454 NLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKEL 513

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           C+  + D +++  +QM   +    +  ++ +    E+   +E   + + +  + N     
Sbjct: 514 CRSSRYDEIIKIFNQMHASKIVIRDDIFSWVISSMEKNGEKEKIHLIKEIQKRSN----S 569

Query: 415 YC 416
           YC
Sbjct: 570 YC 571



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 3/306 (0%)

Query: 261  LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL- 319
            LF ++  +G   +  ++ I++      G    A     EM +  L PS  T+  LIT L 
Sbjct: 700  LFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLC 759

Query: 320  SLHGR-TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
               GR  E+A     EM RSGF          +  LC+ G       CLD +    +   
Sbjct: 760  EKKGRNVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVT 819

Query: 379  EGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE 438
                  I  LC  GK++EA     S   +++        +++  L ++G+   A   +  
Sbjct: 820  VAYSIYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNS 879

Query: 439  MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
            M + G  P  + Y+SL+    +E  L++ LE  + +E     P +  Y A+I G+    +
Sbjct: 880  MKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGK 939

Query: 499  TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRL 558
             + +   F+ M  +G  P+  TY+  +  L    + + A  L+ E+ + + ++ ST++  
Sbjct: 940  VEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEM-LDKGIAPSTINFR 998

Query: 559  SMQYDL 564
            ++ Y L
Sbjct: 999  TVFYGL 1004



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 9/273 (3%)

Query: 118  AVRVMEMIVGSGIIPDAACYTHLVNFLCRRG--NIGYAMQLVEKVEEHGFQTGTVTYNTL 175
            A+R  + +   G+IP ++ +  L+  LC +   N+  A +   ++   GF          
Sbjct: 732  AIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGFVPDRELVQDY 791

Query: 176  VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
            +  LC  G    +   LD L K G  P    YS  +    +   ++EA   L ++ +  G
Sbjct: 792  LGCLCEVGNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCRIGKLEEA---LSELASFEG 847

Query: 236  EPNLV---SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            E +L+   +Y  ++ GL + G  + A++    +   G  P V  Y  L+     E + E+
Sbjct: 848  ERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEK 907

Query: 293  ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
                  +M+ E   PSVVTY  +I      G+ E+A+     M   G +    +Y+  I 
Sbjct: 908  VLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFIN 967

Query: 353  RLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
             LC+  K +  ++ L +M+ +  +P+   +  +
Sbjct: 968  CLCQACKSEDALKLLSEMLDKGIAPSTINFRTV 1000



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 84/180 (46%)

Query: 79   RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
            +L +A   L    G+    D      +++ L +    +KA+  +  +   G  P    YT
Sbjct: 834  KLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYT 893

Query: 139  HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
             L+ +  +   +   ++  +K+E    +   VTY  ++ G  S GK+ ++      + ++
Sbjct: 894  SLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEER 953

Query: 199  GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            G  P+  TYS  +    +    ++A+KLL +++ +G  P+ +++  +  GL +EG+ + A
Sbjct: 954  GTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLA 1013


>AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:11188803-11190605 FORWARD
           LENGTH=600
          Length = 600

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/454 (20%), Positives = 203/454 (44%), Gaps = 25/454 (5%)

Query: 95  QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
           Q+P+V     L+    ++++  +A  V   +   G+  D   Y  L+     +  +    
Sbjct: 78  QEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVK 137

Query: 155 QLVEKVEEHGFQTGTVTYNTLVK--GLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
            +   +E+ G  +     N L+     C    +  +++L ++++++    +  +++ +L 
Sbjct: 138 MMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER----DTVSWNSMLG 193

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  K   + +A +L D++  R    +L+S+N +L G  +      A ELF  +P +    
Sbjct: 194 GLVKAGELRDARRLFDEMPQR----DLISWNTMLDGYARCREMSKAFELFEKMPER---- 245

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           + VS++ ++      G  E A  +  +M     + +VVT+ I+I   +  G  ++A  ++
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPLP--AKNVVTWTIIIAGYAEKGLLKEADRLV 303

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQ 391
           D+M  SG    A +   I+A   + G + L ++    +       N    NA+  M  + 
Sbjct: 304 DQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKC 363

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G +++AF +F  +  K     +     ++  L   G+   A ++   M + G  PD  T+
Sbjct: 364 GNLKKAFDVFNDIPKKDLVSWN----TMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTF 419

Query: 452 SSLVRGMCREGMLDEALEIFRILEE-NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
            +++      G++DE ++ F  +E+  D +P +++Y  L+    +  R   +I++ Q M 
Sbjct: 420 IAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMP 479

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            +   PN + +  L+      NE+DIA  ++  L
Sbjct: 480 ME---PNVVIWGALLGACRMHNEVDIAKEVLDNL 510



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 8/236 (3%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           +T ++     +G +  A +LV+++   G +       +++      G L+  +++   L 
Sbjct: 283 WTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK 342

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           +  L  N +  + LL+   K   + +A  + +DI  +    +LVS+N +L GL   G  +
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK----DLVSWNTMLHGLGVHGHGK 398

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE-EDLSPSVVTYNIL 315
           +AIELF  +  +G  P  V++  +L S  + G  +E       M++  DL P V  Y  L
Sbjct: 399 EAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCL 458

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           +  L   GR ++A +V+  M           +  ++       +VD+  + LD ++
Sbjct: 459 VDLLGRVGRLKEAIKVVQTMP---MEPNVVIWGALLGACRMHNEVDIAKEVLDNLV 511


>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 183/428 (42%), Gaps = 52/428 (12%)

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLL 211
           YA+ + + ++E       + +NT+ +G         +L+L   +   GL PN +T+ F+L
Sbjct: 86  YAISVFKTIQE----PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141

Query: 212 EGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
           +   K +   E  ++   ++  G + +L  +  L++   + GR EDA ++F   P +   
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR--- 198

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
             VVSY  L++     G  E A  L  E+  +D    VV++N +I+  +  G  ++A E+
Sbjct: 199 -DVVSYTALIKGYASRGYIENAQKLFDEIPVKD----VVSWNAMISGYAETGNYKEALEL 253

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCE 390
             +M ++      ++   +++   + G ++L  Q    +    +  N    NA I +  +
Sbjct: 254 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM------------LCRKGNTYPAFQMLYE 438
            G+++ A  +F+ L  K     +        M            + R G T     ML  
Sbjct: 314 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373

Query: 439 MTKC---------------------GFTPDSYTYSSLVRGMCREGMLDEALEIFR-ILEE 476
           +  C                     G T  S   +SL+    + G ++ A ++F  IL +
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
           +     + ++NA+I GF  + R D S ++F RM   G  P++IT+  L+   +    LD+
Sbjct: 434 S-----LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488

Query: 537 AAGLMKEL 544
              + + +
Sbjct: 489 GRHIFRTM 496



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 173/412 (41%), Gaps = 34/412 (8%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+  G  P+      +L    KS   ++  ++   ++  G   D   +T L++   + G 
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +  A ++ +K          V+Y  L+KG  S G +  + +L D +  K    +V +++ 
Sbjct: 185 LEDAHKVFDKSP----HRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNA 236

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           ++ G  +     EA++L  D++     P+  +   +++   + G  E   ++   +   G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F  ++   N L+      G  E A GL   +  +D    V+++N LI   +     ++A 
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKD----VISWNTLIGGYTHMNLYKEAL 352

Query: 330 EVLDEMTRSG---FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-- 384
            +  EM RSG    +VT  S  P  A L   G +D + + +   I +R    +G  NA  
Sbjct: 353 LLFQEMLRSGETPNDVTMLSILPACAHL---GAID-IGRWIHVYIDKRL---KGVTNASS 405

Query: 385 -----IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM 439
                I M  + G ++ A  +F S+ +K           +I      G    +F +   M
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW----NAMIFGFAMHGRADASFDLFSRM 461

Query: 440 TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM-PDIDNYNALI 490
            K G  PD  T+  L+      GMLD    IFR + ++  M P +++Y  +I
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513


>AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:11695611-11697896 FORWARD LENGTH=761
          Length = 761

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 194/446 (43%), Gaps = 64/446 (14%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           +T ++  LC  G    A++L +++ E       V++NTLV GL  +G + ++ Q+ D + 
Sbjct: 141 WTVMLTALCDDGRSEDAVELFDEMPERN----VVSWNTLVTGLIRNGDMEKAKQVFDAMP 196

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
            +    +V +++ +++G  +  G++EA  L  D+     E N+V++  ++ G C+ G   
Sbjct: 197 SR----DVVSWNAMIKGYIENDGMEEAKLLFGDM----SEKNVVTWTSMVYGYCRYGDVR 248

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM--DEEDLSPSVVTYNI 314
           +A  LF ++P +    ++VS+  ++    +   + EA  L  EM  D + +SP+  T   
Sbjct: 249 EAYRLFCEMPER----NIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLIS 304

Query: 315 LITSLS------------LHGRT-EQAFEVLDEMTR-----------SGFNVTATSY--- 347
           L  +              LH +     +E +D   R           SG   +A S    
Sbjct: 305 LAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNE 364

Query: 348 -------NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFI 400
                  N II R  K G ++      +++  +         + I    E G V  AF +
Sbjct: 365 SFDLQSCNIIINRYLKNGDLERAETLFERV--KSLHDKVSWTSMIDGYLEAGDVSRAFGL 422

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           FQ L +K           +IS L +      A  +L +M +CG  P + TYS L+     
Sbjct: 423 FQKLHDKDGVTW----TVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGA 478

Query: 461 EGMLDEALEIFRILEEND--YMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
              LD+   I  ++ +    Y PD+   N+L+  + K    + + EIF +MV K    + 
Sbjct: 479 TSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQK----DT 534

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
           +++  ++ GL+     D A  L KE+
Sbjct: 535 VSWNSMIMGLSHHGLADKALNLFKEM 560



 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 149/342 (43%), Gaps = 63/342 (18%)

Query: 134 AACYTHLVNFLCR---RGNIGYAMQLVEKVEEHG-FQTGTVTYNTLVKGLCSHGKLNQSL 189
           A C   +  FL +   R +I       +K+  +G ++ G      L+    S G L  + 
Sbjct: 3   ALCVKKVCGFLSKLSLRSSISCRRYYGDKIPNYGSYRRGFSNEEALILRRLSEGGLVHAR 62

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            LLD++ ++G    V  ++ LL    K   +DEA  L + +  R    N+V+ N +LTG 
Sbjct: 63  HLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER----NIVTCNAMLTGY 118

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSV 309
            K  R  +A  LFR++P      +VVS+ ++L +LC +GR E+A  L  EM E +    V
Sbjct: 119 VKCRRMNEAWTLFREMP-----KNVVSWTVMLTALCDDGRSEDAVELFDEMPERN----V 169

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
           V++N L+T L  +G  E+A +V D M          S+N +I                  
Sbjct: 170 VSWNTLVTGLIRNGDMEKAKQVFDAMPSR----DVVSWNAMI------------------ 207

Query: 370 MICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNT 429
              + Y  N+G             ++EA  +F  +  K          +++   CR G+ 
Sbjct: 208 ---KGYIENDG-------------MEEAKLLFGDMSEKNVVTW----TSMVYGYCRYGDV 247

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
             A+++  EM +        ++++++ G     +  EAL +F
Sbjct: 248 REAYRLFCEMPERNIV----SWTAMISGFAWNELYREALMLF 285



 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/440 (22%), Positives = 192/440 (43%), Gaps = 81/440 (18%)

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G + +A  L++K+ + G     V + +L+      G L+++  L + + ++    N+ T 
Sbjct: 56  GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER----NIVTC 111

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
           + +L G  K R ++EA  L  ++       N+VS+ V+LT LC +GR+EDA+ELF ++P 
Sbjct: 112 NAMLTGYVKCRRMNEAWTLFREM-----PKNVVSWTVMLTALCDDGRSEDAVELFDEMPE 166

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
           +    +VVS+N L+  L   G  E+A  +   M   D    VV++N +I     +   E+
Sbjct: 167 R----NVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRD----VVSWNAMIKGYIENDGMEE 218

Query: 328 AFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR----------YSP 377
           A  +  +M+         ++  ++   C+ G V    +   +M  R           ++ 
Sbjct: 219 AKLLFGDMSEK----NVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAW 274

Query: 378 NEGTYNAIAMLCEQGKVQEAF------------------FIFQSLGNKQNCPM------- 412
           NE    A+ +  E  K  +A                     F+ LG + +  +       
Sbjct: 275 NELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWET 334

Query: 413 --HD--YCKNVISMLCRKGNTYPAFQML---YEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
             HD    K+++ M    G    A  +L   +++  C    + Y          + G L+
Sbjct: 335 VDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYL---------KNGDLE 385

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            A  +F   E    + D  ++ ++I G+ +      +  +FQ++ +K    + +T+T+++
Sbjct: 386 RAETLF---ERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDK----DGVTWTVMI 438

Query: 526 EGLAFENELDI-AAGLMKEL 544
            GL  +NEL   AA L+ ++
Sbjct: 439 SGLV-QNELFAEAASLLSDM 457



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 16/263 (6%)

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
           + D   +T +++     G++  A  L +K+ +       VT+  ++ GL  +    ++  
Sbjct: 397 LHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHD----KDGVTWTVMISGLVQNELFAEAAS 452

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG---EPNLVSYNVLLT 247
           LL  + + GLKP   TYS LL  A     +D+  K +  +IA+     +P+L+  N L++
Sbjct: 453 LLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQG-KHIHCVIAKTTACYDPDLILQNSLVS 511

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP 307
              K G  EDA E+F    AK      VS+N ++  L + G  ++A  L  EM +    P
Sbjct: 512 MYAKCGAIEDAYEIF----AKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKP 567

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEMTRS-GFNVTATSYNPIIARLCKEGKVDLVVQC 366
           + VT+  ++++ S  G   +  E+   M  +         Y  +I  L + GK+    + 
Sbjct: 568 NSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEF 627

Query: 367 LDQMICRRYSPNEGTYNAIAMLC 389
           +  +    ++P+   Y A+  LC
Sbjct: 628 ISAL---PFTPDHTVYGALLGLC 647



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 15/257 (5%)

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           +L S N+++    K G  E A  LF  + +       VS+  ++      G    A GL 
Sbjct: 367 DLQSCNIIINRYLKNGDLERAETLFERVKSL---HDKVSWTSMIDGYLEAGDVSRAFGLF 423

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
            ++ ++D     VT+ ++I+ L  +    +A  +L +M R G     ++Y+ +++     
Sbjct: 424 QKLHDKD----GVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGAT 479

Query: 358 GKVDL--VVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
             +D    + C+       Y P+    N+ ++M  + G +++A+ IF  +  K     + 
Sbjct: 480 SNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWN- 538

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
              ++I  L   G    A  +  EM   G  P+S T+  ++      G++   LE+F+ +
Sbjct: 539 ---SMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAM 595

Query: 475 EEN-DYMPDIDNYNALI 490
           +E     P ID+Y ++I
Sbjct: 596 KETYSIQPGIDHYISMI 612



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 31/226 (13%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           PD      LV+   + G I  A ++  K+     Q  TV++N+++ GL  HG  +++L L
Sbjct: 501 PDLILQNSLVSMYAKCGAIEDAYEIFAKM----VQKDTVSWNSMIMGLSHHGLADKALNL 556

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKE----RGVD--EAMKLLDDIIARGGEPNLVSYNVL 245
              +   G KPN  T+  +L          RG++  +AMK    I     +P +  Y  +
Sbjct: 557 FKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSI-----QPGIDHYISM 611

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLC--------YEGRWEEANGLL 297
           +  L + G+ ++A E    LP   F+P    Y  LL  LC         EG  E A   L
Sbjct: 612 IDLLGRAGKLKEAEEFISALP---FTPDHTVYGALL-GLCGLNWRDKDAEGIAERAAMRL 667

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
            E+D  +    V   N+        GR +   E+  EM   G   T
Sbjct: 668 LELDPVNAPGHVALCNVYAGL----GRHDMEKEMRKEMGIKGVKKT 709


>AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:2958704-2961040
           FORWARD LENGTH=778
          Length = 778

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 156/364 (42%), Gaps = 57/364 (15%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVE---KVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           PD+  YT L+    + G +    +++E   + ++       VTY T+V    + G ++++
Sbjct: 412 PDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRA 471

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLT 247
            Q+L  + + G+  N  TY+ LL+G  K+  +D A  LL ++    G EP++VSYN+++ 
Sbjct: 472 RQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIID 531

Query: 248 GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE-MDEEDLS 306
           G      +  A+  F ++  +G +P+ +SY  L+++    G+ + AN +  E M++  + 
Sbjct: 532 GCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVK 591

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
             ++ +N+L+      G  E A  V+  M  +GF                          
Sbjct: 592 VDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGF-------------------------- 625

Query: 367 LDQMICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCR 425
                     PN  TY ++A    Q  K  +A  +++ +  K+ C +    K   S    
Sbjct: 626 ---------YPNVATYGSLANGVSQARKPGDALLLWKEI--KERCAVKK--KEAPS---- 668

Query: 426 KGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDN 485
             ++ PA  ML         PD     +L     R     +ALEI   +EEN   P+   
Sbjct: 669 DSSSDPAPPML--------KPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTK 720

Query: 486 YNAL 489
           Y  +
Sbjct: 721 YKKI 724



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 25/308 (8%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIV---GSGIIPDAACYTHLVNFLCRRGNIGYA 153
           PD    T L+    K+ +     R++E +         PD   YT +V+     G +  A
Sbjct: 412 PDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRA 471

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFTYSFLLE 212
            Q++ ++   G     +TYN L+KG C   +++++  LL  +T+  G++P+V +Y+ +++
Sbjct: 472 RQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIID 531

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL-PAKGFS 271
           G         A+   +++  RG  P  +SY  L+      G+ + A  +F ++       
Sbjct: 532 GCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVK 591

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
             ++++N+L+   C  G  E+A  +++ M E    P+V TY  L   +S   +   A  +
Sbjct: 592 VDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLL 651

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
             E+                A   KE   D        M+     P+EG  + +A +C  
Sbjct: 652 WKEIKER------------CAVKKKEAPSDSSSDPAPPML----KPDEGLLDTLADIC-- 693

Query: 392 GKVQEAFF 399
             V+ AFF
Sbjct: 694 --VRAAFF 699



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/441 (19%), Positives = 183/441 (41%), Gaps = 37/441 (8%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK--LNQSLQ 190
           DA     L     + G   YA+ +++ +   G+      +   V  L + G     +S++
Sbjct: 152 DANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEESIK 211

Query: 191 LLDRLTKK-----------GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           L   +T++             +P+   ++ +L         D+  KL +++     EP++
Sbjct: 212 LFIAITRRVKRFGDQSLVGQSRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDV 271

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
           ++YNV++    + GR E  + +   +  KG    + + + L+ +    G    A  ++  
Sbjct: 272 LTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQA 331

Query: 300 MDEE--DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
           M E+  DL   +   N            E   +  ++   SG++            + +E
Sbjct: 332 MREKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFEDDEDSGYSARD--------EVSEE 383

Query: 358 GKVDLVVQCLDQ---------MICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSL--- 404
           G VD+  + L           ++ + ++P+   Y  +     + G+V +   + +++   
Sbjct: 384 GVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQ 443

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
            ++ + P       V+S     G    A Q+L EM + G   +  TY+ L++G C++  +
Sbjct: 444 DDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQI 503

Query: 465 DEALEIFRILEENDYM-PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           D A ++ R + E+  + PD+ +YN +I G      +  ++  F  M  +G  P +I+YT 
Sbjct: 504 DRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTT 563

Query: 524 LVEGLAFENELDIAAGLMKEL 544
           L++  A   +  +A  +  E+
Sbjct: 564 LMKAFAMSGQPKLANRVFDEM 584



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/494 (20%), Positives = 173/494 (35%), Gaps = 95/494 (19%)

Query: 88  EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRR 147
           + +VG+  +PD A    +L          K  ++ E +      PD   Y  ++    R 
Sbjct: 226 QSLVGQS-RPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARV 284

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK--------- 198
           G     + ++E++ + G +    T ++LV      G L  + +++  + +K         
Sbjct: 285 GRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLR 344

Query: 199 -------------------GLKPNVFTYSFLLEGAYKERGV-DEAMKLLDDIIARGGEPN 238
                                  +     +       E GV D   KLL + +   GEP 
Sbjct: 345 ECNAEDLKEKEEEEAEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPP 404

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLA 298
           L                         LP K F+P    Y  L++     GR  +   +L 
Sbjct: 405 L-------------------------LP-KVFAPDSRIYTTLMKGYMKNGRVADTARMLE 438

Query: 299 EM---DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
            M   D+ +  P  VTY  ++++    G  ++A +VL EM R G      +YN ++   C
Sbjct: 439 AMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYC 498

Query: 356 KEGKVDLVVQCLDQMICRR-YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           K+ ++D     L +M       P+  +YN I   C          I  S G         
Sbjct: 499 KQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGC--------ILIDDSAG--------- 541

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF-RI 473
                            A     EM   G  P   +Y++L++     G    A  +F  +
Sbjct: 542 -----------------ALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEM 584

Query: 474 LEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           + +     D+  +N L+ G+C+    + +  +  RM   G  PN  TY  L  G++   +
Sbjct: 585 MNDPRVKVDLIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARK 644

Query: 534 LDIAAGLMKELYMR 547
              A  L KE+  R
Sbjct: 645 PGDALLLWKEIKER 658


>AT5G15280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily
            protein | chr5:4962293-4965976 FORWARD LENGTH=1227
          Length = 1227

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 181/443 (40%), Gaps = 13/443 (2%)

Query: 104  QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
             L+  LC   K   A  +++ ++    IP       L+  LCR    G A  L E+++  
Sbjct: 744  HLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCRANKAGTAFNLAEQID-- 801

Query: 164  GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                 +  +  L+KGL   GK+  +   L  +   GL      Y+ + +G  K     + 
Sbjct: 802  ----SSYVHYALIKGLSLAGKMLDAENQLRIMLSNGLSSYNKIYNVMFQGYCKGNNWMKV 857

Query: 224  MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS-VVSYNILLR 282
             ++L  ++ +    ++ SY   +  +C E ++  AI L   L     +P  V+ YN+L+ 
Sbjct: 858  EEVLGLMVRKNIICSVKSYREYVRKMCLEPQSLSAISLKEFLLLGESNPGGVIIYNMLIF 917

Query: 283  SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
             +       E N +L EM    + P   T+N L+   S       +   L  M   G   
Sbjct: 918  YMFRAKNHLEVNKVLLEMQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKP 977

Query: 343  TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA--IAMLCEQGKVQEAF-F 399
               S   + + LC  G V   +     M  + ++          +  L  +G++ +A  F
Sbjct: 978  NNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNLGSSVVQTKIVETLISKGEIPKAEDF 1037

Query: 400  IFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC 459
            + +   N    P +D   N+I  L  +GN   A  +L  M K    P S +Y S++ G+ 
Sbjct: 1038 LTRVTRNGMMAPNYD---NIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSVINGLL 1094

Query: 460  REGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
            R   LD+A++    + E    P I  ++ L+  FC+  +   S  + + MV  G  P++ 
Sbjct: 1095 RYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQE 1154

Query: 520  TYTILVEGLAFENELDIAAGLMK 542
             +  +++    E     A+ +M+
Sbjct: 1155 MFKTVIDRFRVEKNTVKASEMME 1177



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 164/354 (46%), Gaps = 9/354 (2%)

Query: 110  CKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVE-KVEEHGFQTG 168
            CK N   K   V+ ++V   II     Y   V  +C       A+ L E  +       G
Sbjct: 849  CKGNNWMKVEEVLGLMVRKNIICSVKSYREYVRKMCLEPQSLSAISLKEFLLLGESNPGG 908

Query: 169  TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
             + YN L+  +       +  ++L  +  +G+ P+  T++FL+ G         +++ L 
Sbjct: 909  VIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLS 968

Query: 229  DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS--PSVVSYNILLRSLCY 286
             +I++G +PN  S   + + LC  G  + A++L++ + +KG++   SVV   I+  +L  
Sbjct: 969  AMISKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNLGSSVVQTKIV-ETLIS 1027

Query: 287  EGRWEEANGLLAEMDEEDL-SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
            +G   +A   L  +    + +P+   Y+ +I  LS  G  + A  +L+ M ++     ++
Sbjct: 1028 KGEIPKAEDFLTRVTRNGMMAPN---YDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSS 1084

Query: 346  SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSL 404
            SY+ +I  L +  ++D  +    +M+    SP+  T++ +    CE  +V E+  + +S+
Sbjct: 1085 SYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSM 1144

Query: 405  GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
                  P  +  K VI     + NT  A +M+  M KCG+  D  T+ SL+  M
Sbjct: 1145 VGLGESPSQEMFKTVIDRFRVEKNTVKASEMMEMMQKCGYEVDFETHWSLISNM 1198



 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 102/495 (20%), Positives = 202/495 (40%), Gaps = 95/495 (19%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +PDV    ++L+ LC+   + +A   ME +   G   D   +  L+ + C  G+I  A+ 
Sbjct: 320 EPDVFVGNRILHSLCRRFGSERAYVYMEELEHLGFKQDEVTFGILIGWCCYEGDIKRAVL 379

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
            + ++   G++    +YN ++ GL   G    +  +LD + + G+  ++ T+  ++ G  
Sbjct: 380 YLSEIMSKGYKPDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYC 439

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           K R  +EA ++++ +                 GL +  + ED +         GF P  V
Sbjct: 440 KARQFEEAKRIVNKMFG--------------YGLIEASKVEDPLS--EAFSLVGFDPLAV 483

Query: 276 SYNILLRSLCYEGRW--EEANGLLAEMDEED--------LSPSVV-TYNILITSLSLHGR 324
                  S   +  +  +  NGL    D +         L  SV+  +N LI   S  G 
Sbjct: 484 RLKRDNDSTFSKAEFFDDLGNGLYLHTDLDAYEQRVNMVLDRSVLPEFNSLIVRASEDGD 543

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            + A  +LDEM R G  ++  S+  ++  LC   +  L V                   +
Sbjct: 544 LQTALRLLDEMARWGQKLSRRSFAVLMRSLCA-SRAHLRV-------------------S 583

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           I++L +  K+      +Q  G   N  + +YCK        KG +  +  + ++M +   
Sbjct: 584 ISLLEKWPKLA-----YQLDGETLNFLVQEYCK--------KGFSRHSKLIFHKMVQMHH 630

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI----DNYNALILG-------- 492
             D+ TY+SL+R  C++  L++ L ++   + ++++PD+    D +N L+          
Sbjct: 631 PIDNVTYTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQ 690

Query: 493 -----FCKYQRTD------------------LSIEIFQRMVNKGCVPNEITYTILVEGLA 529
                F  Y  +                   ++  + +R+  +GC+  +  Y  L++GL 
Sbjct: 691 LFERVFISYPLSQSEACRIFVEKLTVLGFSCIAHSVVKRLEGEGCIVEQEVYNHLIKGLC 750

Query: 530 FENELDIAAGLMKEL 544
            E +   A  ++ E+
Sbjct: 751 TEKKDSAAFAILDEM 765



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/454 (20%), Positives = 188/454 (41%), Gaps = 54/454 (11%)

Query: 115 ARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNT 174
           +RKAV + + +   G++P  +CY  L++ L R      A ++     E   +   +  ++
Sbjct: 199 SRKAVMLFDWMRRKGLVPLTSCYQILIDQLVRVHRTESAYRICLDWVETRAELNHMNIDS 258

Query: 175 L---VKGLCSHGKLNQSLQLLDRLTKKG-------------------------------- 199
           +   ++ LC   K+ ++  L  +L   G                                
Sbjct: 259 IGKVIELLCLDQKVQEARVLARKLVALGCILNSSIYSKITIGYNEKQDFEDLLSFIGEVK 318

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
            +P+VF  + +L    +  G + A   ++++   G + + V++ +L+   C EG  + A+
Sbjct: 319 YEPDVFVGNRILHSLCRRFGSERAYVYMEELEHLGFKQDEVTFGILIGWCCYEGDIKRAV 378

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL 319
               ++ +KG+ P V SYN +L  L  +G W+  + +L EM E  +  S+ T+ I++T  
Sbjct: 379 LYLSEIMSKGYKPDVYSYNAILSGLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGY 438

Query: 320 SLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNE 379
               + E+A  ++++M   G    +   +P+       G         D +  R    N+
Sbjct: 439 CKARQFEEAKRIVNKMFGYGLIEASKVEDPLSEAFSLVG--------FDPLAVRLKRDND 490

Query: 380 GTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI----SMLCR---KGNTYPA 432
            T++      + G      ++   L   +        ++V+    S++ R    G+   A
Sbjct: 491 STFSKAEFFDDLGN---GLYLHTDLDAYEQRVNMVLDRSVLPEFNSLIVRASEDGDLQTA 547

Query: 433 FQMLYEMTKCGFTPDSYTYSSLVRGMC-REGMLDEALEIFRILEENDYMPDIDNYNALIL 491
            ++L EM + G      +++ L+R +C     L  ++ +     +  Y  D +  N L+ 
Sbjct: 548 LRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLRVSISLLEKWPKLAYQLDGETLNFLVQ 607

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            +CK   +  S  IF +MV      + +TYT L+
Sbjct: 608 EYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLI 641



 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 128/267 (47%), Gaps = 5/267 (1%)

Query: 90   MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
            M G+G  PD      L++    S     ++R +  ++  G+ P+      + + LC  G+
Sbjct: 935  MQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKPNNRSLRAVTSSLCDNGD 994

Query: 150  IGYAMQLVEKVEEHGFQTGT-VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTY 207
            +  A+ L + +E  G+  G+ V    +V+ L S G++ ++   L R+T+ G+  PN   Y
Sbjct: 995  VKKALDLWQVMESKGWNLGSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMMAPN---Y 1051

Query: 208  SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
              +++       +D A+ LL+ ++     P   SY+ ++ GL +  + + A++   ++  
Sbjct: 1052 DNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSVINGLLRYNQLDKAMDFHTEMVE 1111

Query: 268  KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
             G SPS+ +++ L+   C   +  E+  L+  M     SPS   +  +I    +   T +
Sbjct: 1112 LGLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQEMFKTVIDRFRVEKNTVK 1171

Query: 328  AFEVLDEMTRSGFNVTATSYNPIIARL 354
            A E+++ M + G+ V   ++  +I+ +
Sbjct: 1172 ASEMMEMMQKCGYEVDFETHWSLISNM 1198



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 179/426 (42%), Gaps = 49/426 (11%)

Query: 124 MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC-SH 182
           M++   ++P+   +  L+      G++  A++L++++   G +    ++  L++ LC S 
Sbjct: 521 MVLDRSVLPE---FNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASR 577

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP-NLVS 241
             L  S+ LL++  K   + +  T +FL++  Y ++G     KL+   + +   P + V+
Sbjct: 578 AHLRVSISLLEKWPKLAYQLDGETLNFLVQ-EYCKKGFSRHSKLIFHKMVQMHHPIDNVT 636

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           Y  L+   CK+    D + ++       + P +     L   L  +G  EE   L   + 
Sbjct: 637 YTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERV- 695

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
                   ++Y +         ++E     ++++T  GF+  A S   ++ RL  EG   
Sbjct: 696 -------FISYPL--------SQSEACRIFVEKLTVLGFSCIAHS---VVKRLEGEG--- 734

Query: 362 LVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI 420
               C+ +         +  YN  I  LC + K   AF I   + +K++ P    C  +I
Sbjct: 735 ----CIVE---------QEVYNHLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLI 781

Query: 421 SMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
             LCR      AF +  ++        SY + +L++G+   G + +A    RI+  N   
Sbjct: 782 PRLCRANKAGTAFNLAEQI------DSSYVHYALIKGLSLAGKMLDAENQLRIMLSNGLS 835

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
                YN +  G+CK        E+   MV K  + +  +Y   V  +  E +  ++A  
Sbjct: 836 SYNKIYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSVKSYREYVRKMCLEPQ-SLSAIS 894

Query: 541 MKELYM 546
           +KE  +
Sbjct: 895 LKEFLL 900



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 95/219 (43%), Gaps = 34/219 (15%)

Query: 86   HLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAV--------------------RVMEMI 125
            +L  M+ KG KP+      +   LC +   +KA+                    +++E +
Sbjct: 966  YLSAMISKGMKPNNRSLRAVTSSLCDNGDVKKALDLWQVMESKGWNLGSSVVQTKIVETL 1025

Query: 126  VGSGIIPDA--------------ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVT 171
            +  G IP A                Y +++  L  RGN+  A+ L+  + ++    G+ +
Sbjct: 1026 ISKGEIPKAEDFLTRVTRNGMMAPNYDNIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSS 1085

Query: 172  YNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDII 231
            Y++++ GL  + +L++++     + + GL P++ T+S L+    +   V E+ +L+  ++
Sbjct: 1086 YDSVINGLLRYNQLDKAMDFHTEMVELGLSPSISTWSGLVHKFCEACQVLESERLIKSMV 1145

Query: 232  ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
              G  P+   +  ++     E  T  A E+   +   G+
Sbjct: 1146 GLGESPSQEMFKTVIDRFRVEKNTVKASEMMEMMQKCGY 1184


>AT4G36680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17292479-17293717 REVERSE
           LENGTH=412
          Length = 412

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 37/303 (12%)

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           Y+ L+    +      A+  F  +   G   S VS+N LL +  +   +++   L  E+ 
Sbjct: 105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIP 164

Query: 302 EE--DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           +    + P  ++Y ILI S    G  E+A E++ +M   G  VT  ++  I++ L K+G+
Sbjct: 165 QRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGE 224

Query: 360 VDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
           +++     ++M+                                   K+ C + +   NV
Sbjct: 225 LEVADNLWNEMV-----------------------------------KKGCELDNAAYNV 249

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDY 479
             M  +K +     +++ EM+  G  PD+ +Y+ L+   C  GMLDEA +++  LE N+ 
Sbjct: 250 RIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNC 309

Query: 480 MPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAG 539
            P+   +  LI   C  +  +    IF++ V    +P+  T   LV GL    + D A G
Sbjct: 310 APNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKG 369

Query: 540 LMK 542
           L++
Sbjct: 370 LIR 372



 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           IIPD   Y  L+   C  G    A++++ +++  G +  T+ + T++  L   G+L  + 
Sbjct: 170 IIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVAD 229

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            L + + KKG + +   Y+  +  A KE   +   +L++++ + G +P+ +SYN L+T  
Sbjct: 230 NLWNEMVKKGCELDNAAYNVRIMSAQKE-SPERVKELIEEMSSMGLKPDTISYNYLMTAY 288

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           C+ G  ++A +++  L     +P+  ++  L+  LCY   +E+   + 
Sbjct: 289 CERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIF 336



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 20/305 (6%)

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           YS L+    +    + AM+  + +   G   + VS+N LL         +   +LF ++P
Sbjct: 105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIP 164

Query: 267 AK--GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
            +     P  +SY IL++S C  G  E+A  ++ +M  + +  + + +  +++SL   G 
Sbjct: 165 QRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGE 224

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            E A  + +EM + G  +   +YN  I    KE   + V + +++M      P+  +YN 
Sbjct: 225 LEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESP-ERVKELIEEMSSMGLKPDTISYNY 283

Query: 385 I-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
           +    CE+G + EA  +++ L      P     + +I  LC        +  LYE     
Sbjct: 284 LMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLC--------YSRLYEQGYAI 335

Query: 444 FT--------PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           F         PD  T   LV G+      D+A  + R +++      ++ +  L      
Sbjct: 336 FKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

Query: 496 YQRTD 500
           Y +TD
Sbjct: 396 YSKTD 400



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 140/329 (42%), Gaps = 15/329 (4%)

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY--NILLRSLCYEGRWEEANGLL 297
           +S +   + L KE   + A++++ ++     SP    Y   + +R L    R+ +   L+
Sbjct: 31  ISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLI 90

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKE 357
                +        Y+ LI S         A    ++M + G   +A S+N ++      
Sbjct: 91  ESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHS 150

Query: 358 GKVDLVVQCLDQMICRRYS---PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
              D V Q  D+ I +RY+   P++ +Y   I   C+ G  ++A  I + +  K      
Sbjct: 151 KNFDKVPQLFDE-IPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 209

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRI 473
                ++S L +KG    A  +  EM K G   D+  Y+  VR M  +    E ++   +
Sbjct: 210 IAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYN--VRIMSAQKESPERVK--EL 265

Query: 474 LEENDYM---PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAF 530
           +EE   M   PD  +YN L+  +C+    D + ++++ +    C PN  T+  L+  L +
Sbjct: 266 IEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCY 325

Query: 531 ENELDIAAGLMKE-LYMREVLSRSTVDRL 558
               +    + K+ +YM ++   +T+  L
Sbjct: 326 SRLYEQGYAIFKKSVYMHKIPDFNTLKHL 354



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 7/233 (3%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD      L+   C S    KA+ +M  + G G+      +T +++ L ++G +  A  L
Sbjct: 172 PDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNL 231

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL-QLLDRLTKKGLKPNVFTYSFLLEGAY 215
             ++ + G +     YN  V+ + +  +  + + +L++ ++  GLKP+  +Y++L+  AY
Sbjct: 232 WNEMVKKGCELDNAAYN--VRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLM-TAY 288

Query: 216 KERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            ERG +DEA K+ + +      PN  ++  L+  LC     E    +F+        P  
Sbjct: 289 CERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDF 348

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV-TYNILITSLSLHGRTE 326
            +   L+  L    + ++A GL+  + ++   PS +  +  L   L L+ +T+
Sbjct: 349 NTLKHLVVGLVENKKRDDAKGLIRTV-KKKFPPSFLNAWKKLEEELGLYSKTD 400


>AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:11238421-11240125 FORWARD
           LENGTH=540
          Length = 540

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 187/430 (43%), Gaps = 56/430 (13%)

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
           L R   +  A++L + +   G Q      N+ +  L  +G + ++  + + + KK    N
Sbjct: 117 LSRLDKVRSALELFDSMRFLGLQPNAHACNSFLSCLLRNGDIQKAFTVFEFMRKK---EN 173

Query: 204 V--FTYSFLLEGAYKERGVDEAMKLLDDI---IARGGEPNLVSYNVLLTGLCKEGRTEDA 258
           V   TYS +L+   + +G + A+++  ++     R    ++V YN  ++ LC  GR  + 
Sbjct: 174 VTGHTYSLMLKAVAEVKGCESALRMFRELEREPKRRSCFDVVLYNTAIS-LC--GRINNV 230

Query: 259 IE---LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
            E   ++R +   G   + ++Y++L+      GR E A  +  EM    +S        +
Sbjct: 231 YETERIWRVMKGDGHIGTEITYSLLVSIFVRCGRSELALDVYDEMVNNKISLREDAMYAM 290

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I++ +   + + A ++   M + G      + N +I  L K GKV LV +    +    +
Sbjct: 291 ISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGH 350

Query: 376 SPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK-GNTYPAF 433
            P+E T+NA+   L +  + ++   +F  + ++  C +++Y  N   + C+K G    A 
Sbjct: 351 KPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWEKAV 410

Query: 434 QMLYEMTKCGFT-----------------------------------PDSYTYSSLVRGM 458
           ++LYEM   G T                                   P+++TY SLVR  
Sbjct: 411 KLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKPNTFTYLSLVRSC 470

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
               + DE  +I + +E     PD+  YNA I G C  +    + E++ +M   G  P+ 
Sbjct: 471 IWGSLWDEVEDILKKVE-----PDVSLYNAAIHGMCLRREFKFAKELYVKMREMGLEPDG 525

Query: 519 ITYTILVEGL 528
            T  ++++ L
Sbjct: 526 KTRAMMLQNL 535



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 177/388 (45%), Gaps = 24/388 (6%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T +  ++ L    K+  +L+L D +   GL+PN    +  L    +   + +A  + +  
Sbjct: 109 TLSKRLRKLSRLDKVRSALELFDSMRFLGLQPNAHACNSFLSCLLRNGDIQKAFTVFE-F 167

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL---PAKGFSPSVVSYNILLRSLCYE 287
           + +       +Y+++L  + +    E A+ +FR+L   P +     VV YN  + SLC  
Sbjct: 168 MRKKENVTGHTYSLMLKAVAEVKGCESALRMFRELEREPKRRSCFDVVLYNTAI-SLC-- 224

Query: 288 GRWE---EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
           GR     E   +   M  +    + +TY++L++     GR+E A +V DEM  +  ++  
Sbjct: 225 GRINNVYETERIWRVMKGDGHIGTEITYSLLVSIFVRCGRSELALDVYDEMVNNKISLRE 284

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIF-- 401
            +   +I+   KE K DL ++    M+ +   PN    N  I  L + GKV   F ++  
Sbjct: 285 DAMYAMISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSV 344

Query: 402 -QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK----CGFTPDSYTYSSLVR 456
            +SLG+K +    +Y  N +     K N Y     L++M +    C    + Y Y++ + 
Sbjct: 345 LKSLGHKPD----EYTWNALLTALYKANRYEDVLQLFDMIRSENLCCL--NEYLYNTAMV 398

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
              + G  ++A+++   +E +       +YN +I    K +++ +++ +++ M  + C P
Sbjct: 399 SCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKP 458

Query: 517 NEITYTILVEGLAFENELDIAAGLMKEL 544
           N  TY  LV    + +  D    ++K++
Sbjct: 459 NTFTYLSLVRSCIWGSLWDEVEDILKKV 486



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 124/275 (45%), Gaps = 10/275 (3%)

Query: 113 NKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTY 172
           N   +  R+  ++ G G I     Y+ LV+   R G    A+ + +++  +         
Sbjct: 228 NNVYETERIWRVMKGDGHIGTEITYSLLVSIFVRCGRSELALDVYDEMVNNKISLREDAM 287

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
             ++       K + +L++   + KKG+KPN+   + L+    K   V    K+   + +
Sbjct: 288 YAMISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKS 347

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP-SVVSYNILLRSLCYEGRWE 291
            G +P+  ++N LLT L K  R ED ++LF  + ++     +   YN  + S    G WE
Sbjct: 348 LGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWE 407

Query: 292 EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
           +A  LL EM+   L+ S  +YN++I++     +++ A  V + M +        +Y  ++
Sbjct: 408 KAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKPNTFTYLSLV 467

Query: 352 ARLCKEGKVDLVVQCLDQM--ICRRYSPNEGTYNA 384
            R C  G +       D++  I ++  P+   YNA
Sbjct: 468 -RSCIWGSL------WDEVEDILKKVEPDVSLYNA 495



 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +KE + + A    + M+ KG KP++     L+  L K+ K     +V  ++   G  PD 
Sbjct: 295 TKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGHKPDE 354

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQT-GTVTYNTLVKGLCSHGKLNQSLQLLD 193
             +  L+  L +       +QL + +            YNT +      G   ++++LL 
Sbjct: 355 YTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWEKAVKLLY 414

Query: 194 RLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
            +   GL  +  +Y+ ++    K R    A+ + + +  R  +PN  +Y  L+   C  G
Sbjct: 415 EMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKPNTFTYLSLVRS-CIWG 473

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
              D +E   D+  K   P V  YN  +  +C    ++ A  L  +M E  L P   T  
Sbjct: 474 SLWDEVE---DI-LKKVEPDVSLYNAAIHGMCLRREFKFAKELYVKMREMGLEPDGKTRA 529

Query: 314 ILITSLSLHGR 324
           +++ +L  H +
Sbjct: 530 MMLQNLKKHQK 540



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 18/241 (7%)

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLC 355
            L E +EE LS         +  LS   +   A E+ D M   G    A + N  ++ L 
Sbjct: 101 FLEERNEETLSKR-------LRKLSRLDKVRSALELFDSMRFLGLQPNAHACNSFLSCLL 153

Query: 356 KEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           + G +       + M  ++ +    TY+  +  + E    + A  +F+ L  +   P   
Sbjct: 154 RNGDIQKAFTVFEFMR-KKENVTGHTYSLMLKAVAEVKGCESALRMFRELERE---PKRR 209

Query: 415 YCKNV------ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
            C +V      IS+  R  N Y   ++   M   G      TYS LV    R G  + AL
Sbjct: 210 SCFDVVLYNTAISLCGRINNVYETERIWRVMKGDGHIGTEITYSLLVSIFVRCGRSELAL 269

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           +++  +  N      D   A+I    K ++ DL+++IFQ M+ KG  PN +    L+  L
Sbjct: 270 DVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSL 329

Query: 529 A 529
            
Sbjct: 330 G 330


>AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:16599976-16605994 REVERSE
           LENGTH=1089
          Length = 1089

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 157/354 (44%), Gaps = 18/354 (5%)

Query: 105 LLYDLCKSNKARKAVR-VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           +L  +C S++  +  R V+ ++  SG+  D   YT L++   + G +    ++  ++   
Sbjct: 472 MLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQMSNS 531

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           G +    T+  L+ G    G++ ++      L  K +KP+   ++ L+    +   VD A
Sbjct: 532 GVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRA 591

Query: 224 MKLLDDIIARGG--EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
             +L ++ A     +P+ +S   L+   C  G+ E A E+++ +   G   +   Y I +
Sbjct: 592 FDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAV 651

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
            S    G W+ A  +  +M E+D++P  V ++ LI         ++AF +L +    G  
Sbjct: 652 NSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIR 711

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFI 400
           +   SY+ ++   C        ++  +++   +  P   T NA I  LCE  ++ +A   
Sbjct: 712 LGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEY 771

Query: 401 F---QSLGNKQNCPMHDYCKNVISMLC----RKGNTYPAFQMLYEMTKCGFTPD 447
               ++LG K N   +       SML     RK +   +F++L +    G +P+
Sbjct: 772 LDEIKTLGLKPNTITY-------SMLMLASERKDDFEVSFKLLSQAKGDGVSPN 818



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 173/407 (42%), Gaps = 10/407 (2%)

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           N L R G I   + L+E +++         Y+      C   K  ++++   R TK  L 
Sbjct: 408 NRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHASFFKAC---KKQRAVKEAFRFTKLILN 464

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           P + T++ L+      + ++ A  +L  +   G   +   Y  L++   K G+ +   E+
Sbjct: 465 PTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEV 524

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           F  +   G   ++ ++  L+      G+  +A G    +  +++ P  V +N LI++   
Sbjct: 525 FHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQ 584

Query: 322 HGRTEQAFEVLDEMTRSGFNVTA--TSYNPIIARLCKEGKVDLVVQCLDQMICR---RYS 376
            G  ++AF+VL EM      +     S   ++   C  G+V+   +   QMI +   R +
Sbjct: 585 SGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVY-QMIHKYGIRGT 643

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
           P   T  A+    + G    A  I++ +  K   P   +   +I +         AF +L
Sbjct: 644 PEVYTI-AVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGIL 702

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            +    G    + +YSSL+   C      +ALE++  ++     P I   NALI   C+ 
Sbjct: 703 QDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEG 762

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
            +   ++E    +   G  PN ITY++L+     +++ +++  L+ +
Sbjct: 763 NQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQ 809



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 142/353 (40%), Gaps = 5/353 (1%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T+N L+    S   +  +  +L  + + G+  +   Y+ L+    K   VD   ++   +
Sbjct: 469 TFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQM 528

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
              G E NL ++  L+ G  + G+   A   +  L +K   P  V +N L+ +    G  
Sbjct: 529 SNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAV 588

Query: 291 EEANGLLAEMDEE--DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           + A  +LAEM  E   + P  ++   L+ +    G+ E+A EV   + + G   T   Y 
Sbjct: 589 DRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYT 648

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK-VQEAFFIFQSLGNK 407
             +    K G  D        M  +  +P+E  ++A+  +    K + EAF I Q     
Sbjct: 649 IAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQD-AKS 707

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKC-GFTPDSYTYSSLVRGMCREGMLDE 466
           Q   +     + +   C     +     LYE  K     P   T ++L+  +C    L +
Sbjct: 708 QGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPK 767

Query: 467 ALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEI 519
           A+E    ++     P+   Y+ L+L   +    ++S ++  +    G  PN I
Sbjct: 768 AMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLI 820



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 137/321 (42%), Gaps = 6/321 (1%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +K  +++  F     M   G + ++     L+    ++ +  KA     ++    + PD 
Sbjct: 513 AKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDR 572

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVE--KVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
             +  L++   + G +  A  ++   K E H      ++   L+K  C+ G++ ++ ++ 
Sbjct: 573 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVY 632

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             + K G++     Y+  +    K    D A  +  D+  +   P+ V ++ L+      
Sbjct: 633 QMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHA 692

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
              ++A  + +D  ++G     +SY+ L+ + C    W++A  L  ++    L P++ T 
Sbjct: 693 KMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTM 752

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV--QCLDQM 370
           N LIT+L    +  +A E LDE+   G      +Y+ ++  L  E K D  V  + L Q 
Sbjct: 753 NALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLM--LASERKDDFEVSFKLLSQA 810

Query: 371 ICRRYSPNEGTYNAIAMLCEQ 391
                SPN      I  LC++
Sbjct: 811 KGDGVSPNLIMCRCITSLCKR 831



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 45/312 (14%)

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           +YN LL    ++GR +D I L  DL  +        Y+      C + R  +      ++
Sbjct: 406 AYNRLL----RDGRIKDCISLLEDLDQRDLLDMDKIYHASFFKACKKQRAVKEAFRFTKL 461

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
               L+P++ T+N+L++  +     E A  VL  +  SG       Y  +I+   K GKV
Sbjct: 462 I---LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKV 518

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
           D + +   QM       N  T+ A+   C + G+V +AF  +  L            KNV
Sbjct: 519 DAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGIL----------RSKNV 568

Query: 420 ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL--EEN 477
                                     PD   +++L+    + G +D A ++   +  E +
Sbjct: 569 -------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 603

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
              PD  +  AL+   C   + + + E++Q +   G       YTI V   +   + D A
Sbjct: 604 PIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFA 663

Query: 538 AGLMKELYMREV 549
             + K++  ++V
Sbjct: 664 CSIYKDMKEKDV 675


>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:18694816-18696657 REVERSE
           LENGTH=613
          Length = 613

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 191/442 (43%), Gaps = 35/442 (7%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           +G+  D      L+    + G +G + Q+ +++     +  +V+YN+++ G    G +  
Sbjct: 150 TGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMP----KRDSVSYNSMIDGYVKCGLIVS 205

Query: 188 SLQLLDRLTKKGLKPNVFTYSFLLEG-AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
           + +L D +  +    N+ +++ ++ G A    GVD A KL  D+     E +L+S+N ++
Sbjct: 206 ARELFDLMPME--MKNLISWNSMISGYAQTSDGVDIASKLFADM----PEKDLISWNSMI 259

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
            G  K GR EDA  LF  +P +     VV++  ++      G    A  L  +M   D  
Sbjct: 260 DGYVKHGRIEDAKGLFDVMPRR----DVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD-- 313

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF----NVTATSYNPIIARLCKEGK-VD 361
             VV YN ++     +    +A E+  +M +       + T     P IA+L +  K +D
Sbjct: 314 --VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAID 371

Query: 362 LVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
           + +  +++     Y   +     I M  + G +Q A  +F+ + NK      D+   +I 
Sbjct: 372 MHLYIVEKQF---YLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI----DHWNAMIG 424

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM- 480
            L   G    AF ML ++ +    PD  T+  ++      G++ E L  F ++     + 
Sbjct: 425 GLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIE 484

Query: 481 PDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGL 540
           P + +Y  ++    +    +L+  + + M  +   PN++ +   +   +   E +    +
Sbjct: 485 PRLQHYGCMVDILSRSGSIELAKNLIEEMPVE---PNDVIWRTFLTACSHHKEFETGELV 541

Query: 541 MKELYMREVLSRSTVDRLSMQY 562
            K L ++   + S+   LS  Y
Sbjct: 542 AKHLILQAGYNPSSYVLLSNMY 563


>AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23488884-23489530 REVERSE
           LENGTH=189
          Length = 189

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 10/182 (5%)

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           ++L   ++++GL  N  TY+ L++G ++    D A ++  ++++ G  P++++YN+LL G
Sbjct: 1   MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDG 60

Query: 249 LCKE---------GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
           LCK          G+ ED  +LF  L  KG  P+VV+Y  ++   C +G  EEA  L  +
Sbjct: 61  LCKNGKLEKALVAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRK 120

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M E+   P   TYN LI +    G    + E++ EM    F   A++Y  ++  +  +G+
Sbjct: 121 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYG-LVTDMLHDGR 179

Query: 360 VD 361
           +D
Sbjct: 180 LD 181



 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M+L  ++ + G    TVTY TL++GL   G  + + ++   +   G+ P++ TY+ LL+G
Sbjct: 1   MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDG 60

Query: 214 AYKERGVDEAM---------KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
             K   +++A+          L   +  +G +PN+V+Y  +++G CK+G  E+A  LFR 
Sbjct: 61  LCKNGKLEKALVAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRK 120

Query: 265 LPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
           +   G  P   +YN L+R+   +G    +  L+ EM     +    TY  L+T +   GR
Sbjct: 121 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYG-LVTDMLHDGR 179

Query: 325 TEQAF 329
            ++ F
Sbjct: 180 LDKGF 184



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           M+L  ++  RG   N V+Y  L+ GL + G  + A E+F+++ + G  P +++YNILL  
Sbjct: 1   MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDG 60

Query: 284 LCYEGRWEEA-------NG--LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           LC  G+ E+A       +G  L   +  + + P+VVTY  +I+     G  E+A+ +  +
Sbjct: 61  LCKNGKLEKALVAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRK 120

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV 394
           M   G    + +YN +I    ++G      + + +M   R++ +  TY  +  +   G++
Sbjct: 121 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRL 180

Query: 395 QEAFF 399
            + F 
Sbjct: 181 DKGFL 185



 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 10/174 (5%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G++ +   YT L+  L + G+   A ++ +++   G     +TYN L+ GLC +GKL ++
Sbjct: 11  GLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKA 70

Query: 189 L---------QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           L          L   L+ KG+KPNV TY+ ++ G  K+   +EA  L   +   G  P+ 
Sbjct: 71  LVAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDS 130

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            +YN L+    ++G    + EL +++ +  F+    +Y  L+  + ++GR ++ 
Sbjct: 131 GTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYG-LVTDMLHDGRLDKG 183



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 27/200 (13%)

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AML 388
           E+  EM++ G      +Y  +I  L + G  D+  +   +M+     P+  TYN +   L
Sbjct: 2   ELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGL 61

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C+ GK+++A                             G     + +   ++  G  P+ 
Sbjct: 62  CKNGKLEKALV--------------------------AGKVEDGWDLFCSLSLKGVKPNV 95

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
            TY++++ G C++G  +EA  +FR ++E+  +PD   YN LI    +      S E+ + 
Sbjct: 96  VTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKE 155

Query: 509 MVNKGCVPNEITYTILVEGL 528
           M +     +  TY ++ + L
Sbjct: 156 MRSCRFAGDASTYGLVTDML 175



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%)

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL--------- 468
            +I  L + G+   A ++  EM   G  PD  TY+ L+ G+C+ G L++AL         
Sbjct: 21  TLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKALVAGKVEDGW 80

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           ++F  L      P++  Y  +I GFCK    + +  +F++M   G +P+  TY  L+   
Sbjct: 81  DLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAH 140

Query: 529 AFENELDIAAGLMKEL 544
             + +   +A L+KE+
Sbjct: 141 LRDGDKAASAELIKEM 156



 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M  +G   +    T L+  L ++     A  + + +V  G+ PD   Y  L++ LC+ G 
Sbjct: 7   MSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGK 66

Query: 150 IGYAMQLVEKVEE----------HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           +  A+ +  KVE+           G +   VTY T++ G C  G   ++  L  ++ + G
Sbjct: 67  LEKAL-VAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDG 125

Query: 200 LKPNVFTYSFLLEGAYKE 217
             P+  TY+ L+    ++
Sbjct: 126 PLPDSGTYNTLIRAHLRD 143


>AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:3035443-3037560 FORWARD LENGTH=705
          Length = 705

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 184/405 (45%), Gaps = 64/405 (15%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           +++N LV G   +G+++++ ++ D + ++    NV +++ L++G      VD A    + 
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVA----ES 131

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +  +  E N VS+ V+L G  ++GR +DA +L+  +P K      ++   ++  LC EGR
Sbjct: 132 LFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGR 187

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA---FEVLDEMTRSGFNVTATS 346
            +EA  +  EM E     SV+T+  ++T    + R + A   F+V+ E T   +      
Sbjct: 188 VDEAREIFDEMSER----SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG 243

Query: 347 Y------------------------NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY 382
           Y                        N +I+ L ++G++    +  D M  R    N+ ++
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKER----NDASW 299

Query: 383 NAIAMLCEQGKVQ-EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
             +  + E+   + EA  +F  +  +   P      +++S+     + +   Q+  ++ +
Sbjct: 300 QTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR 359

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP--DIDNYNALILGFCKYQRT 499
           C F  D Y  S L+    + G L ++  IF      D  P  DI  +N++I G+  +   
Sbjct: 360 CQFDVDVYVASVLMTMYIKCGELVKSKLIF------DRFPSKDIIMWNSIISGYASHGLG 413

Query: 500 DLSIEIFQRMVNKGCV-PNEITYTILVEGLAFENELDIAAGLMKE 543
           + ++++F  M   G   PNE+T+   +   ++       AG+++E
Sbjct: 414 EEALKVFCEMPLSGSTKPNEVTFVATLSACSY-------AGMVEE 451



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 150/335 (44%), Gaps = 48/335 (14%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T N  +  L   GK++++ +L D    K +     +++ ++ G +      +A KL D++
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSIS----SWNSMVAGYFANLMPRDARKLFDEM 74

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
             R    N++S+N L++G  K G  ++A ++F  +P +    +VVS+  L++   + G+ 
Sbjct: 75  PDR----NIISWNGLVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKV 126

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           + A  L  +M E++     V++ +++      GR + A + L EM     N+  TS   +
Sbjct: 127 DVAESLFWKMPEKN----KVSWTVMLIGFLQDGRIDDACK-LYEMIPDKDNIARTS---M 178

Query: 351 IARLCKEGKVDLVVQCLDQMICRR----------YSPNEGTYNAIAMLCEQGKVQEAFFI 400
           I  LCKEG+VD   +  D+M  R           Y  N    +A  +     +  E  + 
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWT 238

Query: 401 FQSLGNKQNCPMHD--------------YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
              +G  QN  + D               C  +IS L +KG    A ++   M +     
Sbjct: 239 SMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKE----R 294

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
           +  ++ ++++   R G   EAL++F ++++    P
Sbjct: 295 NDASWQTVIKIHERNGFELEALDLFILMQKQGVRP 329



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 129/309 (41%), Gaps = 62/309 (20%)

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           NV +T L + G+  +A +LF    +K    S+ S+N ++          +A  L  EM +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSK----SISSWNSMVAGYFANLMPRDARKLFDEMPD 76

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
            +    ++++N L++    +G  ++A +V D M          S+  ++      GKVD+
Sbjct: 77  RN----IISWNGLVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDV 128

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
                 +M      P +   +   ML               +G  Q+  + D CK     
Sbjct: 129 AESLFWKM------PEKNKVSWTVML---------------IGFLQDGRIDDACK----- 162

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
                        LYEM       D+   +S++ G+C+EG +DEA EIF  + E   +  
Sbjct: 163 -------------LYEMIP---DKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVI-- 204

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
              +  ++ G+ +  R D + +IF  M  K     E+++T ++ G      ++ A  L +
Sbjct: 205 --TWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELFE 258

Query: 543 ELYMREVLS 551
            + ++ V++
Sbjct: 259 VMPVKPVIA 267


>AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4857241-4858959 FORWARD
           LENGTH=572
          Length = 572

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 5/255 (1%)

Query: 133 DAACYTHLVNFLCRR-GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           DA  +  ++N  C   G+   A ++  ++   G +   V+Y++++      G LN+ L+L
Sbjct: 265 DAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKL 324

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVSYNVLLTGLC 250
            DR+ K+ ++P+   Y+ ++    K   V EA  L+  +   +G EPN+V+YN L+  LC
Sbjct: 325 FDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLC 384

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K  +TE+A ++F ++  KG  P++ +Y+  +R L      EE   LLA+M +    P+V 
Sbjct: 385 KARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKMRKMGCEPTVE 441

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TY +LI  L      +    + DEM         +SY  +I  L   GK++       +M
Sbjct: 442 TYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEM 501

Query: 371 ICRRYSPNEGTYNAI 385
             +   PNE   + I
Sbjct: 502 KDKGMRPNENVEDMI 516



 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 4/235 (1%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G K DV   + ++    K     K +++ + +    I PD   Y  +V+ L +   +  A
Sbjct: 297 GVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEA 356

Query: 154 MQLVEKVEEH-GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
             L++ +EE  G +   VTYN+L+K LC   K  ++ Q+ D + +KGL P + TY   + 
Sbjct: 357 RNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 416

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
                R  +E  +LL  +   G EP + +Y +L+  LC+    ++ + L+ ++  K   P
Sbjct: 417 IL---RTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGP 473

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQ 327
            + SY +++  L   G+ EEA G   EM ++ + P+    +++ +  S     EQ
Sbjct: 474 DLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYAEQ 528



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 153/365 (41%), Gaps = 14/365 (3%)

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
           ++ G+      Y++++  L    K + +  L+D + K    P++     LL    K   V
Sbjct: 153 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRK--FSPSLVNSQTLLIMIRKYCAV 210

Query: 221 DEAMKLLDDIIARGG---EPNLVSYNVLLTGLCKEGRTEDAIEL-FRDLPAKGFSPSVVS 276
            +  K ++   A      E  +  +  LL+ LC+     DA  L F +     F     S
Sbjct: 211 HDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK--S 268

Query: 277 YNILLRSLC-YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +NI+L   C   G   EA  +  EM    +   VV+Y+ +I+  S  G   +  ++ D M
Sbjct: 269 FNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRM 328

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR-YSPNEGTYNA-IAMLCEQGK 393
            +         YN ++  L K   V      +  M   +   PN  TYN+ I  LC+  K
Sbjct: 329 KKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARK 388

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
            +EA  +F  +  K   P        + +L R G     F++L +M K G  P   TY  
Sbjct: 389 TEEAKQVFDEMLEKGLFPTIRTYHAFMRIL-RTGEE--VFELLAKMRKMGCEPTVETYIM 445

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+R +CR    D  L ++  ++E    PD+ +Y  +I G     + + +   ++ M +KG
Sbjct: 446 LIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKG 505

Query: 514 CVPNE 518
             PNE
Sbjct: 506 MRPNE 510



 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 163/394 (41%), Gaps = 14/394 (3%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL---VKGLCSHGKL 185
           G +     Y  +++ L +      A  L++++ +  F    V   TL   ++  C+   +
Sbjct: 156 GYVRSVREYHSMISILGKMRKFDTAWTLIDEMRK--FSPSLVNSQTLLIMIRKYCAVHDV 213

Query: 186 NQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEP-NLVSYNV 244
            +++       +  L+  +  +  LL    + + V +A  L+     +   P +  S+N+
Sbjct: 214 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLI--FCNKDKYPFDAKSFNI 271

Query: 245 LLTGLCKE-GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           +L G C   G   +A  ++ ++   G    VVSY+ ++      G   +   L   M +E
Sbjct: 272 VLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKE 331

Query: 304 DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR-SGFNVTATSYNPIIARLCKEGKVDL 362
            + P    YN ++ +L+      +A  ++  M    G      +YN +I  LCK  K + 
Sbjct: 332 CIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEE 391

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNC-PMHDYCKNVIS 421
             Q  D+M+ +   P   TY+A   +   G  +E F +   +  K  C P  +    +I 
Sbjct: 392 AKQVFDEMLEKGLFPTIRTYHAFMRILRTG--EEVFELLAKM-RKMGCEPTVETYIMLIR 448

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            LCR  +      +  EM +    PD  +Y  ++ G+   G ++EA   ++ +++    P
Sbjct: 449 KLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
           + +  + +   F   Q  +  I   +  VNKG +
Sbjct: 509 NENVEDMIQSWFSGKQYAEQRITDSKGEVNKGAI 542



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 19/265 (7%)

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSL----SLHG 323
           +G+  SV  Y+ ++  L    +++ A  L+ EM     SPS+V    L+  +    ++H 
Sbjct: 155 QGYVRSVREYHSMISILGKMRKFDTAWTLIDEM--RKFSPSLVNSQTLLIMIRKYCAVHD 212

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR--YSPNEGT 381
              +A        R    +    +  +++ LC+   V      +    C +  Y  +  +
Sbjct: 213 -VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLI---FCNKDKYPFDAKS 268

Query: 382 YNAIAM-LCEQ-GKVQEAFFIFQSLGNKQNCPMHDYCK--NVISMLCRKGNTYPAFQMLY 437
           +N +    C   G  +EA  ++  +GN      HD     ++IS   + G+     ++  
Sbjct: 269 FNIVLNGWCNVIGSPREAERVWMEMGNVG--VKHDVVSYSSMISCYSKGGSLNKVLKLFD 326

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM-PDIDNYNALILGFCKY 496
            M K    PD   Y+++V  + +   + EA  + + +EE   + P++  YN+LI   CK 
Sbjct: 327 RMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKA 386

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITY 521
           ++T+ + ++F  M+ KG  P   TY
Sbjct: 387 RKTEEAKQVFDEMLEKGLFPTIRTY 411


>AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 |
           chr1:22865326-22866552 REVERSE LENGTH=408
          Length = 408

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 2/257 (0%)

Query: 99  VAQATQLLYDLCKSNKARKAVRV-MEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           V     LL+    +   ++A RV +EM    GI PD   Y  ++   C  G+   +  +V
Sbjct: 151 VKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIV 210

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++E  G +  + ++  ++ G  +  K ++  ++L  +  +G+   V TY+  ++   K 
Sbjct: 211 AEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGVNIGVSTYNIRIQSLCKR 270

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           +   EA  LLD +++ G +PN V+Y+ L+ G C E   E+A +LF+ +  +G  P    Y
Sbjct: 271 KKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECY 330

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L+  LC  G +E A  L  E  E++  PS      L+  L+   + E+A E++ ++ +
Sbjct: 331 FTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQV-K 389

Query: 338 SGFNVTATSYNPIIARL 354
             F      +N + A L
Sbjct: 390 EKFTRNVELWNEVEAAL 406



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +PD+    +++   C+S  A  +  ++  +   GI P+++ +  +++           
Sbjct: 182 GIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEV 241

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            +++  +++ G   G  TYN  ++ LC   K  ++  LLD +   G+KPN  TYS L+ G
Sbjct: 242 GKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHG 301

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
              E   +EA KL   ++ RG +P+   Y  L+  LCK G  E A+ L ++   K + PS
Sbjct: 302 FCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPS 361

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
                 L+  L  + + EEA  L+ ++ E+
Sbjct: 362 FSIMKSLVNGLAKDSKVEEAKELIGQVKEK 391



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           +E  + +G +    TYN ++K  C  G  + S  ++  + +KG+KPN  ++  ++ G Y 
Sbjct: 175 IEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYA 234

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
           E   DE  K+L  +  RG    + +YN+ +  LCK  ++++A  L   + + G  P+ V+
Sbjct: 235 EDKSDEVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVT 294

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           Y+ L+   C E  +EEA  L   M      P    Y  LI  L   G  E A  +  E  
Sbjct: 295 YSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESM 354

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
              +  + +    ++  L K+ KV+   + + Q +  +++ N   +N +
Sbjct: 355 EKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQ-VKEKFTRNVELWNEV 402



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 38/298 (12%)

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNI 314
           + ++ +FRDL     S +V S N LL +      ++EA  +  EM +   + P + TYN 
Sbjct: 133 DHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNR 192

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           +I      G    ++ ++ EM R G    ++S+  +I+    E K D V + L  M  R 
Sbjct: 193 MIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRG 252

Query: 375 YSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQ 434
            +    TYN                                    I  LC++  +  A  
Sbjct: 253 VNIGVSTYNI----------------------------------RIQSLCKRKKSKEAKA 278

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           +L  M   G  P++ TYS L+ G C E   +EA ++F+I+      PD + Y  LI   C
Sbjct: 279 LLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLC 338

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAA---GLMKELYMREV 549
           K    + ++ + +  + K  VP+      LV GLA +++++ A    G +KE + R V
Sbjct: 339 KGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNV 396


>AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:568135-569865 FORWARD
           LENGTH=576
          Length = 576

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 145/310 (46%), Gaps = 9/310 (2%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNI--G 151
           G  P+       L  LCK +    A  V E ++ SG++ +     +++ + C+ G     
Sbjct: 261 GFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQMGNIITWFCKEGKAEEA 320

Query: 152 YAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPNVFTYSFL 210
           Y++  + K +E       V   TL+  LC + G +  + ++L  L+ +  +  +  +S +
Sbjct: 321 YSVYELAKTKEKSLPPRFVA--TLITALCKNDGTITFAQEMLGDLSGEARRRGIKPFSDV 378

Query: 211 LEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF 270
           +    + R V +A  LL D+I++G  P    +N+++    K G  ++A E+ + + ++G 
Sbjct: 379 IHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRGL 438

Query: 271 SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE 330
            P V +Y +++      G  +EA  +LAE  ++    S VTY+ LI         ++A +
Sbjct: 439 KPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALK 498

Query: 331 VLDEMTRSGFNVTATSYNPIIARLCKEG----KVDLVVQCLDQMICRRYSPNEGTYNAIA 386
           +L+EM R G    A  YN +I   C +     K +++ + + Q      + ++G   A+ 
Sbjct: 499 LLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQKGLHLNAISQGLIRAVK 558

Query: 387 MLCEQGKVQE 396
            +  + KV E
Sbjct: 559 EMESEAKVTE 568



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 6/278 (2%)

Query: 88  EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMI-VGSGIIPDAACYTHLVNFLCR 146
           E M+  G   +  Q   ++   CK  KA +A  V E+       +P     T L+  LC+
Sbjct: 290 EKMLKSGVLSEGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVAT-LITALCK 348

Query: 147 R-GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF 205
             G I +A +++  +     + G   ++ ++  LC    +  +  LL  +  KG  P   
Sbjct: 349 NDGTITFAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNA 408

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
            ++ ++    K   +DEA ++L  + +RG +P++ +Y V+++G  K G  ++A E+  + 
Sbjct: 409 VFNLVVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEA 468

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             K    S V+Y+ L+R  C    ++EA  LL EMD   + P+   YN LI S  L    
Sbjct: 469 KKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALD 528

Query: 326 EQAFEVL-DEMTRSGFNVTATSYNPI--IARLCKEGKV 360
            +  EVL +EM + G ++ A S   I  +  +  E KV
Sbjct: 529 WEKAEVLFEEMKQKGLHLNAISQGLIRAVKEMESEAKV 566



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 3/284 (1%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           +L+    K  K++ A  V       G  P+A  Y   +  LC+R  + +A  + EK+ + 
Sbjct: 236 ELIALFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKS 295

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQL--LDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
           G  +       ++   C  GK  ++  +  L +  +K L P  F  + +      +  + 
Sbjct: 296 GVLSEGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPR-FVATLITALCKNDGTIT 354

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
            A ++L D+        +  ++ ++  LC+    +DA  L  D+ +KG +P    +N+++
Sbjct: 355 FAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVV 414

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
            +    G  +EA  +L  M+   L P V TY ++I+  +  G  ++A E+L E  +    
Sbjct: 415 HACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKK 474

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           ++  +Y+ +I   CK  + D  ++ L++M      PN   YN +
Sbjct: 475 LSPVTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKL 518



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 238 NLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           NL   N L+    K G+++ A ++F      GF+P+  +Y + L +LC     + A  + 
Sbjct: 230 NLEILNELIALFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVC 289

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK- 356
            +M +  +         +IT     G+ E+A+ V +       ++       +I  LCK 
Sbjct: 290 EKMLKSGVLSEGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKN 349

Query: 357 EGKVDLVVQCLDQMI--CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHD 414
           +G +    + L  +    RR      + + I  LC    V++A  +   + +K   P + 
Sbjct: 350 DGTITFAQEMLGDLSGEARRRGIKPFS-DVIHSLCRMRNVKDAKALLLDMISKGPAPGNA 408

Query: 415 YCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRIL 474
               V+    + G+   A ++L  M   G  PD YTY+ ++ G  + GM+DEA EI    
Sbjct: 409 VFNLVVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEA 468

Query: 475 EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
           ++         Y+ALI G+CK +  D ++++   M   G  PN   Y  L++  
Sbjct: 469 KKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSF 522



 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 116/292 (39%), Gaps = 48/292 (16%)

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI- 371
           N LI      G+++ AF+V  +    GF   A +Y   +  LCK   +D      ++M+ 
Sbjct: 235 NELIALFGKLGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLK 294

Query: 372 CRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ-NCP-------MHDYCKN----- 418
               S  E   N I   C++GK +EA+ +++    K+ + P       +   CKN     
Sbjct: 295 SGVLSEGEQMGNIITWFCKEGKAEEAYSVYELAKTKEKSLPPRFVATLITALCKNDGTIT 354

Query: 419 -----------------------VISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
                                  VI  LCR  N   A  +L +M   G  P +  ++ +V
Sbjct: 355 FAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVV 414

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
               + G LDEA E+ +++E     PD+  Y  +I G+ K    D + EI      K   
Sbjct: 415 HACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKK 474

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEF 567
            + +TY  L+ G     E D A  L+ E+           DR  +Q +  E+
Sbjct: 475 LSPVTYHALIRGYCKIEEYDEALKLLNEM-----------DRFGVQPNADEY 515



 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 188/466 (40%), Gaps = 60/466 (12%)

Query: 70  KNDQKSKEVRLN--DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG 127
           ++D++S E  LN  +  LHL+++V   + P ++     L    K     + + V   +V 
Sbjct: 138 RSDEESLEFGLNALNVDLHLDFVVRVFESPGISGKN--LIRFLKWATQNEEITVTTSLVE 195

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           S ++  A+          RR +      LV+++ E     G +    L + +   GKL +
Sbjct: 196 SLLVAIASD--------TRRMDAYGLWDLVKEIGEKE-SCGVLNLEILNELIALFGKLGK 246

Query: 188 SLQLLDRLTKK---GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           S    D  +K    G  PN  TY   LE   K   +D A  + + ++  G          
Sbjct: 247 SKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQMGN 306

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           ++T  CKEG+ E+A  ++                                  LA+  E+ 
Sbjct: 307 IITWFCKEGKAEEAYSVYE---------------------------------LAKTKEKS 333

Query: 305 LSPSVVTYNILITSLSLH-GRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
           L P  V    LIT+L  + G    A E+L +++          ++ +I  LC+   V   
Sbjct: 334 LPPRFVA--TLITALCKNDGTITFAQEMLGDLSGEARRRGIKPFSDVIHSLCRMRNVKDA 391

Query: 364 VQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
              L  MI +  +P    +N +   C + G + EA  + + + ++   P       +IS 
Sbjct: 392 KALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISG 451

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
             + G    A ++L E  K        TY +L+RG C+    DEAL++   ++     P+
Sbjct: 452 YAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPN 511

Query: 483 IDNYNALILGFC----KYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            D YN LI  FC     +++ ++   +F+ M  KG   N I+  ++
Sbjct: 512 ADEYNKLIQSFCLKALDWEKAEV---LFEEMKQKGLHLNAISQGLI 554


>AT1G77405.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29087145-29088521 FORWARD
           LENGTH=458
          Length = 458

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQ--TGTVTYNTLVKGLCSHG------ 183
           PD   Y  ++N LCR GN   A  L+++++  GF+    T TY  L+   C +G      
Sbjct: 198 PDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCR 257

Query: 184 -----KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPN 238
                ++ ++ ++   +  +G  P+V TY+ L++G  K   +  A++L +D+  +G  PN
Sbjct: 258 KAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPN 317

Query: 239 LVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS-PSVVSYNILLRSLCYEGRWEEANGLL 297
            V+YN  +         E AIE+ R +   G   P   +Y  L+ +L    R  EA  L+
Sbjct: 318 QVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDLV 377

Query: 298 AEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
            EM E  L P   TY ++  +LS  G      E L +  R G
Sbjct: 378 VEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKRMREG 419



 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQMLYEMTKCGF-- 444
           L E+G V+EA   F  +  + +C    Y  N +I+ LCR GN   A  +L +M   GF  
Sbjct: 175 LGEEGFVKEALATFYRM-KEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRY 233

Query: 445 TPDSYTYSSLVRGMCREGM-----------LDEALEIFRILEENDYMPDIDNYNALILGF 493
            PD+YTY+ L+   CR GM           + EA  +FR +    ++PD+  YN LI G 
Sbjct: 234 PPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGC 293

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           CK  R   ++E+F+ M  KGCVPN++TY   +   +  NE++ A  +M+ +
Sbjct: 294 CKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTM 344



 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 15/246 (6%)

Query: 127 GSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN 186
           G  ++  A+  T L+  L   G +  A+    +++E+  +     YNT++  LC  G   
Sbjct: 159 GKNVVTTASI-TCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFK 217

Query: 187 QSLQLLDRLTKKGLK--PNVFTYSFLLE---------GAYK--ERGVDEAMKLLDDIIAR 233
           ++  LLD++   G +  P+ +TY+ L+          G  K   R + EA ++  +++ R
Sbjct: 218 KARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFR 277

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G  P++V+YN L+ G CK  R   A+ELF D+  KG  P+ V+YN  +R        E A
Sbjct: 278 GFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGA 337

Query: 294 NGLLAEMDEEDLS-PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
             ++  M +     P   TY  LI +L    R  +A +++ EM  +G      +Y  +  
Sbjct: 338 IEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCD 397

Query: 353 RLCKEG 358
            L  EG
Sbjct: 398 ALSSEG 403



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 22/235 (9%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T +   L+K L   G + ++L    R+ +   KP+V+ Y+ ++    +     +A  LLD
Sbjct: 165 TASITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLD 224

Query: 229 DIIARGGE--PNLVSYNVLLTGLCKEG-----------RTEDAIELFRDLPAKGFSPSVV 275
            +   G    P+  +Y +L++  C+ G           R  +A  +FR++  +GF P VV
Sbjct: 225 QMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVV 284

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +YN L+   C   R   A  L  +M  +   P+ VTYN  I   S+    E A E++  M
Sbjct: 285 TYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTM 344

Query: 336 TRSGFNVTATS-YNPIIARLCKEGKV----DLVVQCLDQMICRRYSPNEGTYNAI 385
            + G  V  +S Y P+I  L +  +     DLVV+ ++  +     P E TY  +
Sbjct: 345 KKLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGLV----PREYTYKLV 395



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 18/248 (7%)

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
            S   L+  L +EG  ++A+  F  +      P V +YN ++ +LC  G +++A  LL +
Sbjct: 166 ASITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQ 225

Query: 300 MDEEDL--SPSVVTYNILITSLSLHG-----------RTEQAFEVLDEMTRSGFNVTATS 346
           M        P   TY ILI+S   +G           R  +A  +  EM   GF     +
Sbjct: 226 MQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVT 285

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLG 405
           YN +I   CK  ++   ++  + M  +   PN+ TYN+ I       +++ A  + +++ 
Sbjct: 286 YNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMK 345

Query: 406 N-KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM- 463
                 P       +I  L        A  ++ EM + G  P  YTY  +   +  EG+ 
Sbjct: 346 KLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLA 405

Query: 464 --LDEALE 469
             LDE L 
Sbjct: 406 STLDEELH 413



 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 21/222 (9%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI--IPDAACYTHLVNFLCRRG----- 148
           KPDV     ++  LC+    +KA  +++ +   G    PD   YT L++  CR G     
Sbjct: 197 KPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGC 256

Query: 149 ------NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
                  +  A ++  ++   GF    VTYN L+ G C   ++ ++L+L + +  KG  P
Sbjct: 257 RKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVP 316

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARG-GEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           N  TY+  +        ++ A++++  +   G G P   +Y  L+  L +  R  +A +L
Sbjct: 317 NQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDL 376

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
             ++   G  P   +Y ++  +L  E       GL + +DEE
Sbjct: 377 VVEMVEAGLVPREYTYKLVCDALSSE-------GLASTLDEE 411



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 25/276 (9%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +  S   L++ L  EG  +EA      M E    P V  YN +I +L   G  ++A  +L
Sbjct: 164 TTASITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLL 223

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
           D+M   GF     +Y   I               L    C RY    G   AI     + 
Sbjct: 224 DQMQLPGFRYPPDTYTYTI---------------LISSYC-RYGMQTGCRKAI-----RR 262

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYS 452
           ++ EA  +F+ +  +   P       +I   C+      A ++  +M   G  P+  TY+
Sbjct: 263 RMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYN 322

Query: 453 SLVRGMCREGMLDEALEIFRILEENDY-MPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           S +R       ++ A+E+ R +++  + +P    Y  LI    + +R   + ++   MV 
Sbjct: 323 SFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVE 382

Query: 512 KGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
            G VP E TY ++ + L+ E    +A+ L +EL+ R
Sbjct: 383 AGLVPREYTYKLVCDALSSEG---LASTLDEELHKR 415



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 39/268 (14%)

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVT---YNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
           ++G W+     L ++   +   +VVT      L+  L   G  ++A      M       
Sbjct: 143 FKGLWD----FLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYRMKEYHCKP 198

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICR--RYSPNEGTYNAIAMLCEQGKVQEAFFI 400
              +YN II  LC+ G        LDQM     RY P+  TY  +               
Sbjct: 199 DVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTIL--------------- 243

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKG---NTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
                      +  YC+  +   CRK      + A +M  EM   GF PD  TY+ L+ G
Sbjct: 244 -----------ISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDG 292

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG-CVP 516
            C+   +  ALE+F  ++    +P+   YN+ I  +      + +IE+ + M   G  VP
Sbjct: 293 CCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVP 352

Query: 517 NEITYTILVEGLAFENELDIAAGLMKEL 544
              TYT L+  L        A  L+ E+
Sbjct: 353 GSSTYTPLIHALVETRRAAEARDLVVEM 380



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 73  QKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIP 132
           +K+   R+ +A      M+ +G  PDV     L+   CK+N+  +A+ + E +   G +P
Sbjct: 257 RKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVP 316

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEE--HGFQTGTVTYNTLVKGLCSHGKLNQSLQ 190
           +   Y   + +      I  A++++  +++  HG   G+ TY  L+  L    +  ++  
Sbjct: 317 NQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGV-PGSSTYTPLIHALVETRRAAEARD 375

Query: 191 LLDRLTKKGLKPNVFTYSFLLEGAYKE 217
           L+  + + GL P  +TY  + +    E
Sbjct: 376 LVVEMVEAGLVPREYTYKLVCDALSSE 402


>AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:1221116-1223461 REVERSE
           LENGTH=781
          Length = 781

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 55/377 (14%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
            V++NT++ G    GK++++ QL D    +    +VFT++ ++ G  + R V+EA +L D
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDESPVQ----DVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +  R    N VS+N +L G  +  R E A ELF  +P +    +V ++N ++      G
Sbjct: 306 KMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVSTWNTMITGYAQCG 357

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           +  EA  L  +M + D     V++  +I   S  G + +A  +  +M R G  +  +S++
Sbjct: 358 KISEAKNLFDKMPKRD----PVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNK 407
             ++       ++L  Q   +++   Y       NA+  M C+ G ++EA  +F+ +  K
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                +     +I+   R G    A +    M + G  PD  T  +++      G++D+ 
Sbjct: 474 DIVSWN----TMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            + F  + + DY                                 G +PN   Y  +V+ 
Sbjct: 530 RQYFYTMTQ-DY---------------------------------GVMPNSQHYACMVDL 555

Query: 528 LAFENELDIAAGLMKEL 544
           L     L+ A  LMK +
Sbjct: 556 LGRAGLLEDAHNLMKNM 572



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 165/360 (45%), Gaps = 47/360 (13%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           +V+YN ++ G   +G+   + +L D + ++ L     +++ +++G  + R + +A +L +
Sbjct: 95  SVSYNGMISGYLRNGEFELARKLFDEMPERDL----VSWNVMIKGYVRNRNLGKARELFE 150

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            +  R    ++ S+N +L+G  + G  +DA  +F  +P K    + VS+N LL +     
Sbjct: 151 IMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNS 202

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV-TATSY 347
           + EEA  L    +    + ++V++N L+       +  +A +  D M     NV    S+
Sbjct: 203 KMEEACMLFKSRE----NWALVSWNCLLGGFVKKKKIVEARQFFDSM-----NVRDVVSW 253

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC---EQGKVQEAFFIFQSL 404
           N II    + GK+D   Q  D+      SP +  +   AM+    +   V+EA  +F  +
Sbjct: 254 NTIITGYAQSGKIDEARQLFDE------SPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
             +     +      +     +G      + L+++  C    +  T+++++ G  + G +
Sbjct: 308 PERNEVSWNAMLAGYV-----QGERMEMAKELFDVMPC---RNVSTWNTMITGYAQCGKI 359

Query: 465 DEALEIFRILEENDYMPDID--NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            EA  +F      D MP  D  ++ A+I G+ +   +  ++ +F +M  +G   N  +++
Sbjct: 360 SEAKNLF------DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413



 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/440 (19%), Positives = 185/440 (42%), Gaps = 74/440 (16%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D   +  ++    R  N+G A +L E + E        ++NT++ G   +G ++ +  + 
Sbjct: 125 DLVSWNVMIKGYVRNRNLGKARELFEIMPERD----VCSWNTMLSGYAQNGCVDDARSVF 180

Query: 193 DRLTKKG-LKPNVF--------------------------TYSFLLEGAYKERGVDEAMK 225
           DR+ +K  +  N                            +++ LL G  K++ + EA +
Sbjct: 181 DRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQ 240

Query: 226 LLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLC 285
             D +  R    ++VS+N ++TG  + G+ ++A +LF + P +     V ++  ++    
Sbjct: 241 FFDSMNVR----DVVSWNTIITGYAQSGKIDEARQLFDESPVQ----DVFTWTAMVSGYI 292

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
                EEA  L  +M E +     V++N ++       R E A E+ D M         +
Sbjct: 293 QNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVS 344

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC---EQGKVQEAFFIFQ 402
           ++N +I    + GK+       D+M      P     +  AM+    + G   EA  +F 
Sbjct: 345 TWNTMITGYAQCGKISEAKNLFDKM------PKRDPVSWAAMIAGYSQSGHSFEALRLFV 398

Query: 403 SL---GNKQN----CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
            +   G + N          C +V+++   K       Q+   + K G+    +  ++L+
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGK-------QLHGRLVKGGYETGCFVGNALL 451

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
              C+ G ++EA ++F+ +       DI ++N +I G+ ++   ++++  F+ M  +G  
Sbjct: 452 LMYCKCGSIEEANDLFKEMAGK----DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507

Query: 516 PNEITYTILVEGLAFENELD 535
           P++ T   ++   +    +D
Sbjct: 508 PDDATMVAVLSACSHTGLVD 527



 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 146/364 (40%), Gaps = 44/364 (12%)

Query: 6   NTVSPAANLSA--KTRRTNSSCFLYSQVLNLRTFSLN---KGF---SRVLASAQI--SIS 55
           N VS  A LSA  +  +   +C L+    N    S N    GF    +++ + Q   S++
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246

Query: 56  PKDSIFTLPNWRV--------GKNDQKSK---EVRLNDAFLHLEYMVGKGQKPDVAQATQ 104
            +D +    +W          GK D+  +   E  + D F     + G  Q   V +A +
Sbjct: 247 VRDVV----SWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARE 302

Query: 105 LLYDLCKSNKARKAVRVMEMIVGS---------GIIP--DAACYTHLVNFLCRRGNIGYA 153
           L   + + N+      +   + G           ++P  + + +  ++    + G I  A
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
             L +K+     +   V++  ++ G    G   ++L+L  ++ ++G + N  ++S  L  
Sbjct: 363 KNLFDKMP----KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
                 ++   +L   ++  G E      N LL   CK G  E+A +LF+++  K     
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK----D 474

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
           +VS+N ++      G  E A      M  E L P   T   ++++ S  G  ++  +   
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534

Query: 334 EMTR 337
            MT+
Sbjct: 535 TMTQ 538


>AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5117489-5119060 REVERSE
           LENGTH=523
          Length = 523

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 159/362 (43%), Gaps = 41/362 (11%)

Query: 123 EMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
           EM    G + +   Y  L+N       +  A+ + E+ +E G     V ++ L+  LC +
Sbjct: 168 EMSKRDGFV-NEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRY 226

Query: 183 GKLNQSLQLL-DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVS 241
             +  +  L   R  + G   ++   + +L G      V EA +   DIIA    P++VS
Sbjct: 227 KHVEFAETLFCSRRREFGC--DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVS 284

Query: 242 YNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMD 301
           Y  ++  L K+G+   A+EL+R +     +P V   N ++ +LC++ R  EA  +  E+ 
Sbjct: 285 YGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREIS 344

Query: 302 EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVD 361
           E+   P+VVTYN L+  L    RTE+ +E+++EM   G +                    
Sbjct: 345 EKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSC------------------- 385

Query: 362 LVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
                         SPN+ T++ +    ++ K  +   + + +  K  C M     N++ 
Sbjct: 386 --------------SPNDVTFSYLLKYSQRSK--DVDIVLERMA-KNKCEMTSDLYNLMF 428

Query: 422 MLCRKGNTYPAFQMLY-EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYM 480
            L  + +     + ++ EM + G  PD  TY+  + G+  +G + EAL  F+ +     +
Sbjct: 429 RLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMV 488

Query: 481 PD 482
           P+
Sbjct: 489 PE 490



 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 9/265 (3%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D      ++N  C  GN+  A +  + +     +   V+Y T++  L   GKL ++++L 
Sbjct: 246 DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELY 305

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             +      P+V   + +++    ++ + EA+++  +I  +G +PN+V+YN LL  LCK 
Sbjct: 306 RAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKI 365

Query: 253 GRTEDAIELFRDLPAKG--FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
            RTE   EL  ++  KG   SP+ V+++ LL+   Y  R ++ + +L  M +     +  
Sbjct: 366 RRTEKVWELVEEMELKGGSCSPNDVTFSYLLK---YSQRSKDVDIVLERMAKNKCEMTSD 422

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
            YN++        + E+  E+  EM RSG      +Y   I  L  +GK+   +    +M
Sbjct: 423 LYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEM 482

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQ 395
           + +   P   T     ML  Q K +
Sbjct: 483 MSKGMVPEPRT----EMLLNQNKTK 503



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 5/244 (2%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D+     +L   C      +A R  + I+ S   PD   Y  ++N L ++G +G AM+L 
Sbjct: 246 DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELY 305

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
             + +          N ++  LC   ++ ++L++   +++KG  PNV TY+ LL+   K 
Sbjct: 306 RAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKI 365

Query: 218 RGVDEAMKLLDDIIARGG--EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           R  ++  +L++++  +GG   PN V+++ LL       R++D   +   +       +  
Sbjct: 366 RRTEKVWELVEEMELKGGSCSPNDVTFSYLLK---YSQRSKDVDIVLERMAKNKCEMTSD 422

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            YN++ R      + E+   + +EM+   L P   TY I I  L   G+  +A     EM
Sbjct: 423 LYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEM 482

Query: 336 TRSG 339
              G
Sbjct: 483 MSKG 486



 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 10/275 (3%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           S + YN +L  L    R+EE + +  EM + D   +  TY +L+   +   + ++A  V 
Sbjct: 142 SSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVF 201

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML---- 388
           +     G +    +++ ++  LC+   V+      + + C R         A+ M+    
Sbjct: 202 ERRKEFGIDDDLVAFHGLLMWLCRYKHVEFA----ETLFCSRRREFGCDIKAMNMILNGW 257

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
           C  G V EA   ++ +   +  P       +I+ L +KG    A ++   M      PD 
Sbjct: 258 CVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDV 317

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
              ++++  +C +  + EALE+FR + E    P++  YN+L+   CK +RT+   E+ + 
Sbjct: 318 KICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEE 377

Query: 509 MVNKG--CVPNEITYTILVEGLAFENELDIAAGLM 541
           M  KG  C PN++T++ L++      ++DI    M
Sbjct: 378 MELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERM 412



 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +PDV     ++  L K  K  KA+ +   +  +   PD     ++++ LC +  I  A++
Sbjct: 279 RPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALE 338

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFLLEG 213
           +  ++ E G     VTYN+L+K LC   +  +  +L++ +  KG    PN  T+S+LL+ 
Sbjct: 339 VFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKY 398

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
           + + + VD    +L+ +     E     YN++     +  + E   E++ ++   G  P 
Sbjct: 399 SQRSKDVD---IVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPD 455

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
             +Y I +  L  +G+  EA     EM  + + P   T  +L
Sbjct: 456 QRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLL 497


>AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21824233 REVERSE
           LENGTH=583
          Length = 583

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 143/326 (43%), Gaps = 7/326 (2%)

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A ++L  +   G  PN++SY  L+    + G+  +A  +FR + + G  PS ++Y I+L+
Sbjct: 158 AERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILK 217

Query: 283 SLCYEGRWEEANGLLAEMDEED---LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSG 339
           +     +++EA  +   + +E    L P    Y+++I      G  E+A +V   M   G
Sbjct: 218 TFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKG 277

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAF 398
              +  +YN +++    E     V +  DQM      P+  +Y   I       + +EA 
Sbjct: 278 VPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEAL 334

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +F+ + +    P H     ++      G    A  +   M +    PD ++Y++++   
Sbjct: 335 SVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAY 394

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
                ++ A + F+ ++ + + P+I  Y  LI G+ K    +  +E++++M   G   N+
Sbjct: 395 VNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQ 454

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
              T +++          A G  KE+
Sbjct: 455 TILTTIMDASGRCKNFGSALGWYKEM 480



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 13/366 (3%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A RV+ ++   G  P+   YT L+    R G    A  +  +++  G +   +TY  ++K
Sbjct: 158 AERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILK 217

Query: 178 GLCSHGKLNQSLQLLDRL---TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
                 K  ++ ++ + L    K  LKP+   Y  ++    K    ++A K+   ++ +G
Sbjct: 218 TFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKG 277

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
              + V+YN L++    E   ++  +++  +      P VVSY +L+++     R EEA 
Sbjct: 278 VPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEAL 334

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            +  EM +  + P+   YNIL+ + ++ G  EQA  V   M R        SY  +++  
Sbjct: 335 SVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAY 394

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNC 410
                ++   +   ++    + PN  TY   I    +   V++   +++ +   G K N 
Sbjct: 395 VNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKAN- 453

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                   ++    R  N   A     EM  CG  PD    + L+     +  L+EA E+
Sbjct: 454 --QTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511

Query: 471 FRILEE 476
             I  E
Sbjct: 512 TGIRNE 517



 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 6/274 (2%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG---SGIIPDAACY 137
           N+A      M   G +P       +L    + +K ++A  V E ++    S + PD   Y
Sbjct: 191 NNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMY 250

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             ++    + GN   A ++   +   G    TVTYN+L+    S+ ++++   + D++ +
Sbjct: 251 HMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQR 307

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
             ++P+V +Y+ L++   + R  +EA+ + ++++  G  P   +YN+LL      G  E 
Sbjct: 308 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 367

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A  +F+ +      P + SY  +L +       E A      +  +   P++VTY  LI 
Sbjct: 368 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIK 427

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
             +     E+  EV ++M  SG     T    I+
Sbjct: 428 GYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 461



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 40/338 (11%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           +  L+    + GN   A +++  + + G     ++Y  L++     GK N +  +  R+ 
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG---EPNLVSYNVLLTGLCKEG 253
             G +P+  TY  +L+   +     EA ++ + ++       +P+   Y++++    K G
Sbjct: 202 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             E A ++F  +  KG   S V+YN L   + +E  ++E + +  +M   D+ P VV+Y 
Sbjct: 262 NYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYA 318

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           +LI +     R E+A  V +EM  +G   T  +YN ++                      
Sbjct: 319 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF------------------- 359

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
                     AI+ + EQ K      +F+S+   +  P       ++S      +   A 
Sbjct: 360 ----------AISGMVEQAKT-----VFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAE 404

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
           +    +   GF P+  TY +L++G  +   +++ +E++
Sbjct: 405 KFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVY 442



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 118/275 (42%), Gaps = 40/275 (14%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           S + + +L+ +    G +  A  +L+ + +   +P+V++Y  L+ S    G+   A  + 
Sbjct: 138 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 197

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
             M  SG   +A +Y                     Q+I + +              E  
Sbjct: 198 RRMQSSGPEPSAITY---------------------QIILKTF-------------VEGD 223

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCK---NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           K +EA  +F++L +++  P+    K    +I M  + GN   A ++   M   G    + 
Sbjct: 224 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 283

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY+SL   M  E    E  +I+  ++ +D  PD+ +Y  LI  + + +R + ++ +F+ M
Sbjct: 284 TYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 340

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           ++ G  P    Y IL++  A    ++ A  + K +
Sbjct: 341 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 375



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%), Gaps = 6/204 (2%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +PDV     L+    ++ +  +A+ V E ++ +G+ P    Y  L++     G +  A  
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           + + +          +Y T++    +   +  + +   R+   G +PN+ TY  L++G  
Sbjct: 371 VFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYA 430

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED---AIELFRDLPAKGFSP 272
           K   V++ M++ + +   G + N     +L T +   GR ++   A+  ++++ + G  P
Sbjct: 431 KANDVEKMMEVYEKMRLSGIKAN---QTILTTIMDASGRCKNFGSALGWYKEMESCGVPP 487

Query: 273 SVVSYNILLRSLCYEGRWEEANGL 296
              + N+LL     +   EEA  L
Sbjct: 488 DQKAKNVLLSLASTQDELEEAKEL 511


>AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21821495-21823919 REVERSE
           LENGTH=590
          Length = 590

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 150/341 (43%), Gaps = 8/341 (2%)

Query: 209 FLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
            +L  AY + G  + A ++L  +   G  PN++SY  L+    + G+  +A  +FR + +
Sbjct: 150 LMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQS 209

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED---LSPSVVTYNILITSLSLHGR 324
            G  PS ++Y I+L++     +++EA  +   + +E    L P    Y+++I      G 
Sbjct: 210 SGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGN 269

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            E+A +V   M   G   +  +YN +++    E     V +  DQM      P+  +Y  
Sbjct: 270 YEKARKVFSSMVGKGVPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYAL 326

Query: 385 -IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCG 443
            I       + +EA  +F+ + +    P H     ++      G    A  +   M +  
Sbjct: 327 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDR 386

Query: 444 FTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI 503
             PD ++Y++++        ++ A + F+ ++ + + P+I  Y  LI G+ K    +  +
Sbjct: 387 IFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMM 446

Query: 504 EIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           E++++M   G   N+   T +++          A G  KE+
Sbjct: 447 EVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEM 487



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 13/366 (3%)

Query: 118 AVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVK 177
           A RV+ ++   G  P+   YT L+    R G    A  +  +++  G +   +TY  ++K
Sbjct: 165 AERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILK 224

Query: 178 GLCSHGKLNQSLQLLDRL---TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
                 K  ++ ++ + L    K  LKP+   Y  ++    K    ++A K+   ++ +G
Sbjct: 225 TFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKG 284

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
              + V+YN L++    E   ++  +++  +      P VVSY +L+++     R EEA 
Sbjct: 285 VPQSTVTYNSLMSF---ETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEAL 341

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            +  EM +  + P+   YNIL+ + ++ G  EQA  V   M R        SY  +++  
Sbjct: 342 SVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAY 401

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSL---GNKQNC 410
                ++   +   ++    + PN  TY   I    +   V++   +++ +   G K N 
Sbjct: 402 VNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKAN- 460

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                   ++    R  N   A     EM  CG  PD    + L+     +  L+EA E+
Sbjct: 461 --QTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 518

Query: 471 FRILEE 476
             I  E
Sbjct: 519 TGIRNE 524



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 6/274 (2%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG---SGIIPDAACY 137
           N+A      M   G +P       +L    + +K ++A  V E ++    S + PD   Y
Sbjct: 198 NNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMY 257

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
             ++    + GN   A ++   +   G    TVTYN+L+    S+ ++++   + D++ +
Sbjct: 258 HMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQR 314

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED 257
             ++P+V +Y+ L++   + R  +EA+ + ++++  G  P   +YN+LL      G  E 
Sbjct: 315 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 374

Query: 258 AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILIT 317
           A  +F+ +      P + SY  +L +       E A      +  +   P++VTY  LI 
Sbjct: 375 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIK 434

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
             +     E+  EV ++M  SG     T    I+
Sbjct: 435 GYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 468



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 40/338 (11%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           +  L+    + GN   A +++  + + G     ++Y  L++     GK N +  +  R+ 
Sbjct: 149 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 208

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG---EPNLVSYNVLLTGLCKEG 253
             G +P+  TY  +L+   +     EA ++ + ++       +P+   Y++++    K G
Sbjct: 209 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 268

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
             E A ++F  +  KG   S V+YN L   + +E  ++E + +  +M   D+ P VV+Y 
Sbjct: 269 NYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYA 325

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICR 373
           +LI +     R E+A  V +EM  +G   T  +YN ++                      
Sbjct: 326 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAF------------------- 366

Query: 374 RYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
                     AI+ + EQ K      +F+S+   +  P       ++S      +   A 
Sbjct: 367 ----------AISGMVEQAKT-----VFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAE 411

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF 471
           +    +   GF P+  TY +L++G  +   +++ +E++
Sbjct: 412 KFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVY 449



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 118/275 (42%), Gaps = 40/275 (14%)

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           S + + +L+ +    G +  A  +L+ + +   +P+V++Y  L+ S    G+   A  + 
Sbjct: 145 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 204

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
             M  SG   +A +Y                     Q+I + +              E  
Sbjct: 205 RRMQSSGPEPSAITY---------------------QIILKTF-------------VEGD 230

Query: 393 KVQEAFFIFQSLGNKQNCPMHDYCK---NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           K +EA  +F++L +++  P+    K    +I M  + GN   A ++   M   G    + 
Sbjct: 231 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 290

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           TY+SL   M  E    E  +I+  ++ +D  PD+ +Y  LI  + + +R + ++ +F+ M
Sbjct: 291 TYNSL---MSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 347

Query: 510 VNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           ++ G  P    Y IL++  A    ++ A  + K +
Sbjct: 348 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 382



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%), Gaps = 6/204 (2%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +PDV     L+    ++ +  +A+ V E ++ +G+ P    Y  L++     G +  A  
Sbjct: 318 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 377

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           + + +          +Y T++    +   +  + +   R+   G +PN+ TY  L++G  
Sbjct: 378 VFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYA 437

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED---AIELFRDLPAKGFSP 272
           K   V++ M++ + +   G + N     +L T +   GR ++   A+  ++++ + G  P
Sbjct: 438 KANDVEKMMEVYEKMRLSGIKAN---QTILTTIMDASGRCKNFGSALGWYKEMESCGVPP 494

Query: 273 SVVSYNILLRSLCYEGRWEEANGL 296
              + N+LL     +   EEA  L
Sbjct: 495 DQKAKNVLLSLASTQDELEEAKEL 518


>AT1G80880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:30395194-30396921 REVERSE
           LENGTH=540
          Length = 540

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 151/313 (48%), Gaps = 8/313 (2%)

Query: 98  DVAQATQLLYD-LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           D  +A  L+ D    +N   +A+R  +++      P    +  L+  LCR G+I  A + 
Sbjct: 187 DTRKAMFLMMDRYAAANDTSQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEF 246

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCS-HGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           +    +  F      +N ++ G C+    + ++ ++   +    + PN  +YS ++    
Sbjct: 247 M-LASKKLFPVDVEGFNVILNGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFS 305

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           K   + ++++L D++  RG  P +  YN L+  L +E   ++A++L + L  +G  P  V
Sbjct: 306 KVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSV 365

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           +YN ++R LC  G+ + A  +LA M  E+LSP+V T++  + +++     E+  EVL +M
Sbjct: 366 TYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLEAVNF----EKTLEVLGQM 421

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKV 394
             S    T  ++  I+ +L K  + +  ++   +M       N   Y A I  L   G +
Sbjct: 422 KISDLGPTEETFLLILGKLFKGKQPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWL 481

Query: 395 QEAFFIFQSLGNK 407
           ++A  I+  + +K
Sbjct: 482 EKAREIYSEMKSK 494



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 325 TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN--EGTY 382
           T QA    D M +        ++  ++  LC+ G ++   + +  +  ++  P   EG  
Sbjct: 205 TSQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFM--LASKKLFPVDVEGFN 262

Query: 383 NAIAMLCE-QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
             +   C     V EA  I++ +GN    P  D   ++IS   + GN + + ++  EM K
Sbjct: 263 VILNGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKK 322

Query: 442 CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDL 501
            G  P    Y+SLV  + RE   DEA+++ + L E    PD   YN++I   C+  + D+
Sbjct: 323 RGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDV 382

Query: 502 SIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
           +  +   M+++   P   T+   +E + FE  L++  G MK
Sbjct: 383 ARNVLATMISENLSPTVDTFHAFLEAVNFEKTLEV-LGQMK 422



 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 11/309 (3%)

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           +A++  D +      P   ++  LL  LC+ G  E A E F     K F   V  +N++L
Sbjct: 207 QAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKA-EEFMLASKKLFPVDVEGFNVIL 265

Query: 282 RSLCYEGRWE---EANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
              C    W    EA  +  EM    ++P+  +Y+ +I+  S  G    +  + DEM + 
Sbjct: 266 NGWC--NIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKR 323

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G       YN ++  L +E   D  ++ + ++      P+  TYN+ I  LCE GK+  A
Sbjct: 324 GLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVA 383

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
             +  ++ ++   P  D     +  +    N     ++L +M      P   T+  ++  
Sbjct: 384 RNVLATMISENLSPTVDTFHAFLEAV----NFEKTLEVLGQMKISDLGPTEETFLLILGK 439

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPN 517
           + +    + AL+I+  ++  + + +   Y A I G       + + EI+  M +KG V N
Sbjct: 440 LFKGKQPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGN 499

Query: 518 EITYTILVE 526
            +   +L E
Sbjct: 500 PMLQKLLEE 508



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 88/196 (44%), Gaps = 4/196 (2%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           SK   L D+    + M  +G  P +     L+Y L + +   +A+++M+ +   G+ PD+
Sbjct: 305 SKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDS 364

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
             Y  ++  LC  G +  A  ++  +          T++  ++ +       ++L++L +
Sbjct: 365 VTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLEAV----NFEKTLEVLGQ 420

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +    L P   T+  +L   +K +  + A+K+  ++       N   Y   + GL   G 
Sbjct: 421 MKISDLGPTEETFLLILGKLFKGKQPENALKIWAEMDRFEIVANPALYLATIQGLLSCGW 480

Query: 255 TEDAIELFRDLPAKGF 270
            E A E++ ++ +KGF
Sbjct: 481 LEKAREIYSEMKSKGF 496


>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29900617-29903127 FORWARD
           LENGTH=836
          Length = 836

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 166/377 (44%), Gaps = 2/377 (0%)

Query: 104 QLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           Q++  L K+ K   A    +    SG   D   Y +L+     +G    A ++ E +E+ 
Sbjct: 248 QVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKT 307

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                  TY  ++  L   G+L+ + +L  ++ ++ L+P+   +S L++   K   +D +
Sbjct: 308 DSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTS 367

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           MK+  ++   G  P+   +  L+    K G+ + A+ L+ ++   GF P+   Y +++ S
Sbjct: 368 MKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIES 427

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
               G+ E A  +  +M++    P+  TY+ L+   +  G+ + A ++ + MT +G    
Sbjct: 428 HAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPG 487

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQS 403
            +SY  ++  L  +  VD+  + L +M    YS +    + + +  +   V  A    + 
Sbjct: 488 LSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKDASVDLALKWLRF 547

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE-MTKCGFTPDSYTYSSLVRGMCREG 462
           +G+      +++    +   C K   Y + + L E +       D   Y+S++  + R  
Sbjct: 548 MGS-SGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQ 606

Query: 463 MLDEALEIFRILEENDY 479
             D+  ++  IL    +
Sbjct: 607 DEDKERQLMSILSATKH 623



 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 137/296 (46%), Gaps = 1/296 (0%)

Query: 75  SKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDA 134
           +K  +L  AF   +     G K D      L+          KA  + E +  +  + D 
Sbjct: 254 AKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDG 313

Query: 135 ACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
           + Y  ++  L + G +  A +L ++++E   +     +++LV  +   G+L+ S+++   
Sbjct: 314 STYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYME 373

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           +   G +P+   +  L++   K   +D A++L D++   G  PN   Y +++    K G+
Sbjct: 374 MQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGK 433

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            E A+ +F+D+   GF P+  +Y+ LL      G+ + A  +   M    L P + +Y  
Sbjct: 434 LEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYIS 493

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           L+T L+     + A ++L EM   G++V   + + ++    K+  VDL ++ L  M
Sbjct: 494 LLTLLANKRLVDVAGKILLEMKAMGYSVDVCASD-VLMIYIKDASVDLALKWLRFM 548



 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 141/309 (45%), Gaps = 8/309 (2%)

Query: 242 YNVLLTGLCKEGRTEDAI-----ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           Y VL  GL  +GR    I     E+ +D  + G   S  +YN +++ L    + E A   
Sbjct: 208 YVVLFDGL-NQGRDFVGIQSLFEEMVQDSSSHG-DLSFNAYNQVIQYLAKAEKLEVAFCC 265

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
             +  E        TYN L+      G   +AFE+ + M ++   +  ++Y  II  L K
Sbjct: 266 FKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAK 325

Query: 357 EGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQNCPMHDY 415
            G++D   +   QM  R+  P+   ++++   + + G++  +  ++  +    + P    
Sbjct: 326 SGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATM 385

Query: 416 CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILE 475
             ++I    + G    A ++  EM K GF P+   Y+ ++    + G L+ A+ +F+ +E
Sbjct: 386 FVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDME 445

Query: 476 ENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELD 535
           +  ++P    Y+ L+       + D +++I+  M N G  P   +Y  L+  LA +  +D
Sbjct: 446 KAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVD 505

Query: 536 IAAGLMKEL 544
           +A  ++ E+
Sbjct: 506 VAGKILLEM 514



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 156/367 (42%), Gaps = 4/367 (1%)

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRL 195
            Y  ++ +L +   +  A    +K +E G +  T TYN L+    + G   ++ ++ + +
Sbjct: 245 AYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESM 304

Query: 196 TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
            K     +  TY  ++    K   +D A KL   +  R   P+   ++ L+  + K GR 
Sbjct: 305 EKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRL 364

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
           + +++++ ++   G  PS   +  L+ S    G+ + A  L  EM +    P+   Y ++
Sbjct: 365 DTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMI 424

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           I S +  G+ E A  V  +M ++GF  T ++Y+ ++      G+VD  ++  + M     
Sbjct: 425 IESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGL 484

Query: 376 SPNEGTY-NAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYPAF 433
            P   +Y + + +L  +  V  A  I   L  K      D C  +V+ +  +  +   A 
Sbjct: 485 RPGLSSYISLLTLLANKRLVDVAGKIL--LEMKAMGYSVDVCASDVLMIYIKDASVDLAL 542

Query: 434 QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
           + L  M   G   +++    L     + G+ D A  +   L  +    D+  Y +++   
Sbjct: 543 KWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHL 602

Query: 494 CKYQRTD 500
            + Q  D
Sbjct: 603 VRCQDED 609



 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 115/243 (47%), Gaps = 6/243 (2%)

Query: 307 PSVVTYNILITSLSLHGR----TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
           PS   Y +L   L+  GR     +  FE + + + S  +++  +YN +I  L K  K+++
Sbjct: 203 PSDECYVVLFDGLN-QGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEV 261

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAML-CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVIS 421
              C  +        +  TYN + ML   +G   +AF I++S+    +       + +I 
Sbjct: 262 AFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIP 321

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
            L + G    AF++  +M +    P    +SSLV  M + G LD +++++  ++   + P
Sbjct: 322 SLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRP 381

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
               + +LI  + K  + D ++ ++  M   G  PN   YT+++E  A   +L++A  + 
Sbjct: 382 SATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVF 441

Query: 542 KEL 544
           K++
Sbjct: 442 KDM 444



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 1/248 (0%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K  RL+ +      M G G +P       L+    K+ K   A+R+ + +  SG  
Sbjct: 356 DSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFR 415

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
           P+   YT ++    + G +  AM + + +E+ GF     TY+ L++     G+++ ++++
Sbjct: 416 PNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475

Query: 192 LDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCK 251
            + +T  GL+P + +Y  LL     +R VD A K+L ++ A G   ++ + +VL+  + K
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYI-K 534

Query: 252 EGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
           +   + A++  R + + G   +      L  S    G ++ A  LL  +        +V 
Sbjct: 535 DASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVL 594

Query: 312 YNILITSL 319
           Y  ++  L
Sbjct: 595 YTSILAHL 602



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
           RW+    L  ++D+    P++V    +  SL +    + A  +     +  + + +    
Sbjct: 152 RWKWGPELETQLDKLQFVPNMVH---ITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECY 208

Query: 349 PIIARLCKEGKVDLVVQCL-DQMICRRYSPNEGTYNA----IAMLCEQGKVQEAFFIFQS 403
            ++     +G+  + +Q L ++M+    S  + ++NA    I  L +  K++ AF  F+ 
Sbjct: 209 VVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKK 268

Query: 404 LGNKQNCPMHDYCKNVISML-CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREG 462
              +  C +     N + ML   KG  Y AF++   M K     D  TY  ++  + + G
Sbjct: 269 -AQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSG 327

Query: 463 MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
            LD A ++F+ ++E    P    +++L+    K  R D S++++  M   G  P+   + 
Sbjct: 328 RLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFV 387

Query: 523 ILVEGLAFENELDIAAGLMKEL 544
            L++  A   +LD A  L  E+
Sbjct: 388 SLIDSYAKAGKLDTALRLWDEM 409


>AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 |
           chr1:22997826-22999796 REVERSE LENGTH=656
          Length = 656

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 183/465 (39%), Gaps = 97/465 (20%)

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           +N + R G I  A  + EK+E       TVT+NT++ G     ++NQ+ +L D + K+  
Sbjct: 47  LNQMIRSGYIAEARDIFEKLEARN----TVTWNTMISGYVKRREMNQARKLFDVMPKR-- 100

Query: 201 KPNVFTYSFLLEGAYKERGV---DEAMKLLDDIIARGG---------------------- 235
             +V T++ ++ G     G+   +EA KL D++ +R                        
Sbjct: 101 --DVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLL 158

Query: 236 -----EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
                E N VS++ ++TG C+ G  + A+ LFR +P K  SP       L+  L    R 
Sbjct: 159 FEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCA----LVAGLIKNERL 214

Query: 291 EEANGLLAEM-----DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT--------- 336
            EA  +L +        EDL   V  YN LI      G+ E A  + D++          
Sbjct: 215 SEAAWVLGQYGSLVSGREDL---VYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGG 271

Query: 337 --RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
             R  F     S+N +I    K G V       DQM  R    +  ++N  I       +
Sbjct: 272 EFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDR----DTISWNTMIDGYVHVSR 327

Query: 394 VQEAFFIFQSLGNK-------------------------QNCP-MHDYCKNVISMLCRKG 427
           +++AF +F  + N+                         +  P  H    N I     K 
Sbjct: 328 MEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKN 387

Query: 428 NTYP-AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
             Y  A  +   M   G  PD +T +SL+        L   +++ +I+ +   +PD+  +
Sbjct: 388 KDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKT-VIPDVPVH 446

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFE 531
           NALI  + +      S  IF  M  K  V   IT+  ++ G AF 
Sbjct: 447 NALITMYSRCGEIMESRRIFDEMKLKREV---ITWNAMIGGYAFH 488



 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 183/421 (43%), Gaps = 42/421 (9%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D+  +  +++   +   IG A+ L EK+ E       V+++ ++ G C +G+++ ++ L 
Sbjct: 135 DSFSWNTMISGYAKNRRIGEALLLFEKMPERN----AVSWSAMITGFCQNGEVDSAVVLF 190

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI--IARGGEPNLVSYNVLLTGLC 250
            ++  K   P       L+ G  K   + EA  +L     +  G E  + +YN L+ G  
Sbjct: 191 RKMPVKDSSP----LCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYG 246

Query: 251 KEGRTEDAIELFRDLP-----------AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
           + G+ E A  LF  +P            + F  +VVS+N ++++    G    A  L  +
Sbjct: 247 QRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQ 306

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M + D     +++N +I       R E AF +  EM     N  A S+N +++     G 
Sbjct: 307 MKDRD----TISWNTMIDGYVHVSRMEDAFALFSEMP----NRDAHSWNMMVSGYASVGN 358

Query: 360 VDLVVQCLDQMICRRYSPNEGT--YNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYC 416
           V+L     ++      +P + T  +N+I    E+ K  +EA  +F  +  +   P     
Sbjct: 359 VELARHYFEK------TPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTL 412

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEE 476
            +++S      N     QM +++      PD   +++L+    R G   E +E  RI +E
Sbjct: 413 TSLLSASTGLVNLRLGMQM-HQIVVKTVIPDVPVHNALITMYSRCG---EIMESRRIFDE 468

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
                ++  +NA+I G+  +     ++ +F  M + G  P+ IT+  ++   A    +D 
Sbjct: 469 MKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDE 528

Query: 537 A 537
           A
Sbjct: 529 A 529



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 93  KGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGY 152
           +G+KPD    T LL         R  +++ +++V + +IPD   +  L+    R G I  
Sbjct: 403 EGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKT-VIPDVPVHNALITMYSRCGEI-- 459

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
            M+     +E   +   +T+N ++ G   HG  +++L L   +   G+ P+  T+  +L 
Sbjct: 460 -MESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLN 518

Query: 213 GAYKERGVDEA-MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFS 271
                  VDEA  + +  +     EP +  Y+ L+     +G+ E+A+ +   +P   F 
Sbjct: 519 ACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMP---FE 575

Query: 272 PSVVSYNILL---RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
           P    +  LL   R     G    A   ++ ++ E  +P V+ YN+
Sbjct: 576 PDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNM 621



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 35/407 (8%)

Query: 136 CYTHLVNFLCRRGNIGYAMQLVEKV-----EEHG------FQTGTVTYNTLVKGLCSHGK 184
            Y  L+    +RG +  A  L +++     ++HG      F    V++N+++K     G 
Sbjct: 237 AYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGD 296

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           +  +  L D++  +    +  +++ +++G      +++A  L  ++  R       S+N+
Sbjct: 297 VVSARLLFDQMKDR----DTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAH----SWNM 348

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           +++G    G  E A   F   P K      VS+N ++ +      ++EA  L   M+ E 
Sbjct: 349 MVSGYASVGNVELARHYFEKTPEK----HTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEG 404

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
             P   T   L+++ +         ++   + ++        +N +I    + G++    
Sbjct: 405 EKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPV-HNALITMYSRCGEIMESR 463

Query: 365 QCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML 423
           +  D+M  +R      T+NA I      G   EA  +F S+ +    P H    +V++  
Sbjct: 464 RIFDEMKLKREVI---TWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520

Query: 424 CRKGNTYPA-FQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
              G    A  Q +  M+     P    YSSLV     +G  +EA+ I   +    + PD
Sbjct: 521 AHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMP---FEPD 577

Query: 483 IDNYNALILGFCKYQRTDL---SIEIFQRMVNKGCVPNEITYTILVE 526
              + AL+     Y    L   + E   R+  +   P  + Y +  +
Sbjct: 578 KTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYAD 624


>AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19704600-19706417 REVERSE
           LENGTH=499
          Length = 499

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 173/395 (43%), Gaps = 44/395 (11%)

Query: 161 EEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGV 220
           ++H ++    TY  L K L +  + +Q+  L + +  +GLKP +  Y+ L+    K   +
Sbjct: 136 KQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELL 195

Query: 221 DEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI 279
           D+A   L+ + +    +P++ ++ VL++  CK GR +    +  ++   G   S V+YN 
Sbjct: 196 DKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNT 255

Query: 280 LLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVL-DEMTR 337
           ++      G +EE   +LA+M E+ D  P V T N +I S   +GR  +  E        
Sbjct: 256 IIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYG-NGRNMRKMESWYSRFQL 314

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN-AIAMLCEQGKVQE 396
            G     T++N +I    K G    +   +D M  R +S    TYN  I    + G++++
Sbjct: 315 MGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
              +F+                               +M Y+    G  P+S TY SLV 
Sbjct: 375 MDDVFR-------------------------------KMKYQ----GVKPNSITYCSLVN 399

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI--EIFQRMVNKGC 514
              + G++ +   + R +  +D + D   +N +I  +   Q  DL+   E++ +M  + C
Sbjct: 400 AYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYG--QAGDLATMKELYIQMEERKC 457

Query: 515 VPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
            P++IT+  +++        D    L K++   ++
Sbjct: 458 KPDKITFATMIKTYTAHGIFDAVQELEKQMISSDI 492



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 10/308 (3%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVME-MIVGSGIIPDAACYTH 139
           + A L  E M+ +G KP +   T L+    KS    KA   +E M   S   PD   +T 
Sbjct: 161 DQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTV 220

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L++  C+ G       +V ++   G    TVTYNT++ G    G   +   +L  + + G
Sbjct: 221 LISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDG 280

Query: 200 LK-PNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR----GGEPNLVSYNVLLTGLCKEGR 254
              P+V T + ++ G+Y   G    M+ ++   +R    G +P++ ++N+L+    K G 
Sbjct: 281 DSLPDVCTLNSII-GSY---GNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM 336

Query: 255 TEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
            +    +   +  + FS + V+YNI++ +    GR E+ + +  +M  + + P+ +TY  
Sbjct: 337 YKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCS 396

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           L+ + S  G   +   VL ++  S   +    +N II    + G +  + +   QM  R+
Sbjct: 397 LVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERK 456

Query: 375 YSPNEGTY 382
             P++ T+
Sbjct: 457 CKPDKITF 464



 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 130/322 (40%), Gaps = 37/322 (11%)

Query: 211 LEGAYKERGVDEAMKLLDDIIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
           L+ A KE     A+K+ + +  +   EP   +Y  L   L    + + A  LF  + ++G
Sbjct: 115 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 174

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE-EDLSPSVVTYNILITSLSLHGRTEQA 328
             P++  Y  L+         ++A   L  M    D  P V T+ +LI+     GR +  
Sbjct: 175 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLV 234

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS-PNEGTYNAIAM 387
             ++ EM+  G   +  +YN II    K G  + +   L  MI    S P+  T N+I  
Sbjct: 235 KSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSI-- 292

Query: 388 LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
                          S GN +N             + +  + Y  FQ++      G  PD
Sbjct: 293 -------------IGSYGNGRN-------------MRKMESWYSRFQLM------GVQPD 320

Query: 448 SYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQ 507
             T++ L+    + GM  +   +   +E+  +      YN +I  F K  R +   ++F+
Sbjct: 321 ITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFR 380

Query: 508 RMVNKGCVPNEITYTILVEGLA 529
           +M  +G  PN ITY  LV   +
Sbjct: 381 KMKYQGVKPNSITYCSLVNAYS 402


>AT1G11630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:3913168-3914385 REVERSE
           LENGTH=405
          Length = 405

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 2/223 (0%)

Query: 81  NDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHL 140
           N  +L +  M G   +PD+    +++  LC+S     +  ++  +    I P AA +  +
Sbjct: 166 NRVYLEMPKMYG--IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLM 223

Query: 141 VNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGL 200
           ++   +        +++  ++E G   G  TYN +++ LC   K  ++  L+D +    +
Sbjct: 224 IDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRM 283

Query: 201 KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
           +PN  TYS L+ G   E  +DEAM L + ++  G +P+   Y  L+  LCK G  E A+ 
Sbjct: 284 RPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALI 343

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           L R+   K + PS      L+  L    + +EA  L+A + E+
Sbjct: 344 LCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEK 386



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 2/257 (0%)

Query: 99  VAQATQLLYDLCKSNKARKAVRV-MEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           V     LL+    +   ++A RV +EM    GI PD   Y  ++  LC  G+   +  +V
Sbjct: 146 VKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIV 205

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++E    +    ++  ++ G     K ++  +++  + + G+   V TY+ +++   K 
Sbjct: 206 AEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKR 265

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
           +   EA  L+D +++    PN V+Y++L+ G C E   ++A+ LF  +   G+ P    Y
Sbjct: 266 KKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECY 325

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
             L+  LC  G +E A  L  E  E++  PS      L+  L+   + ++A E++  + +
Sbjct: 326 FTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELI-AVVK 384

Query: 338 SGFNVTATSYNPIIARL 354
             F      +N + A L
Sbjct: 385 EKFTRNVDLWNEVEAAL 401



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 142/339 (41%), Gaps = 39/339 (11%)

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTED-AIELFRDLPAKGFSPSV 274
           +E+      +LLD  I    +P   S+ V    L       D +I+ FR+L       +V
Sbjct: 87  REKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTV 146

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            S N LL +      ++EAN +  EM +   + P + TYN +I  L   G T  ++ ++ 
Sbjct: 147 KSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVA 206

Query: 334 EMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK 393
           EM R     TA S+  +I    KE K D V + +  M          TYN +        
Sbjct: 207 EMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIM-------- 258

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
                                     I  LC++  +  A  ++  +  C   P+S TYS 
Sbjct: 259 --------------------------IQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSL 292

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           L+ G C E  LDEA+ +F ++  N Y PD + Y  LI   CK    + ++ + +  + K 
Sbjct: 293 LIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKN 352

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLM---KELYMREV 549
            VP+      LV GLA  +++D A  L+   KE + R V
Sbjct: 353 WVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNV 391



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 1/223 (0%)

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
           +G +    TYN +++ LC  G  + S  ++  + +K +KP   ++  +++G YKE   DE
Sbjct: 176 YGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDE 235

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
             K++  +   G    + +YN+++  LCK  ++ +A  L   + +    P+ V+Y++L+ 
Sbjct: 236 VRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIH 295

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
             C E   +EA  L   M      P    Y  LI  L   G  E A  +  E     +  
Sbjct: 296 GFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVP 355

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
           + +    ++  L    KVD   + L  ++  +++ N   +N +
Sbjct: 356 SFSVMKWLVNGLASRSKVDEAKE-LIAVVKEKFTRNVDLWNEV 397



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 70  KNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG 129
           K D+  K +R+ D F         G    VA    ++  LCK  K+ +A  +++ ++   
Sbjct: 232 KFDEVRKVMRMMDEF---------GVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCR 282

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           + P++  Y+ L++  C   N+  AM L E +  +G++  +  Y TL+  LC  G    +L
Sbjct: 283 MRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETAL 342

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
            L     +K   P+     +L+ G      VDEA +L+
Sbjct: 343 ILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELI 380


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/454 (21%), Positives = 198/454 (43%), Gaps = 25/454 (5%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG 164
           LL + C S K  +  +++ ++  +G+  +    T LV+  CR G++  A ++ E ++   
Sbjct: 42  LLLERCSSLKELR--QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID--- 96

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
                V Y+T++KG      L+++LQ   R+    ++P V+ +++LL+    E  +    
Sbjct: 97  -SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGK 155

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
           ++   ++  G   +L +   L     K  +  +A ++F  +P +     +VS+N ++   
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER----DLVSWNTIVAGY 211

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
              G    A  ++  M EE+L PS +T   ++ ++S         E+     RSGF+   
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQS 403
                ++    K G ++   Q  D M+ R    N  ++N+ I    +    +EA  IFQ 
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLER----NVVSWNSMIDAYVQNENPKEAMLIFQK 327

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
           + ++   P        +      G+      +     + G   +    +SL+   C+   
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
           +D A  +F  L+    +    ++NA+ILGF +  R   ++  F +M ++   P+  TY  
Sbjct: 388 VDTAASMFGKLQSRTLV----SWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443

Query: 524 LVEGLAFENELDIAAGLMKELYMREVLSRSTVDR 557
           ++  +A   EL I        ++  V+ RS +D+
Sbjct: 444 VITAIA---ELSITH---HAKWIHGVVMRSCLDK 471



 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/461 (20%), Positives = 195/461 (42%), Gaps = 26/461 (5%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQ 155
           +P V   T LL       + R    +  ++V SG   D    T L N   +   +  A +
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARK 191

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           + +++ E       V++NT+V G   +G    +L+++  + ++ LKP+  T   +L    
Sbjct: 192 VFDRMPERDL----VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVS 247

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL-CKEGRTEDAIELFRDLPAKGFSPSV 274
             R +    K +     R G  +LV+ +  L  +  K G  E A +LF  +  +    +V
Sbjct: 248 ALRLISVG-KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER----NV 302

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
           VS+N ++ +       +EA  +  +M +E + P+ V+    + + +  G  E+   +   
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGK 393
               G +   +  N +I+  CK  +VD       ++  R       ++NA+ +   + G+
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLV----SWNAMILGFAQNGR 418

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
             +A   F  + ++   P      +VI+ +     T+ A  +   + +     + +  ++
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478

Query: 454 LVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKG 513
           LV    + G +  A  IF ++ E      +  +NA+I G+  +     ++E+F+ M    
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERH----VTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534

Query: 514 CVPNEITYTILVEGLAFENELDIAAGL-----MKELYMREV 549
             PN +T+  ++   +    ++  AGL     MKE Y  E+
Sbjct: 535 IKPNGVTFLSVISACSHSGLVE--AGLKCFYMMKENYSIEL 573



 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/355 (18%), Positives = 142/355 (40%), Gaps = 49/355 (13%)

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T LV+   + G++  A QL + + E       V++N+++     +    +++ +  ++  
Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERN----VVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 198 KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI-IARGGEPNLVSYNVLLTGLCKEGRTE 256
           +G+KP   +    L  A  + G  E  + +  + +  G + N+   N L++  CK    +
Sbjct: 331 EGVKPTDVSVMGALH-ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
            A  +F  L ++    ++VS+N ++      GR  +A    ++M    + P   TY  +I
Sbjct: 390 TAASMFGKLQSR----TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
           T+++    T  A  +   + RS  +        ++    K G + +     D M  R  +
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505

Query: 377 PNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQML 436
               T+NA+                                  I      G    A ++ 
Sbjct: 506 ----TWNAM----------------------------------IDGYGTHGFGKAALELF 527

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP-DIDNYNALI 490
            EM K    P+  T+ S++      G+++  L+ F +++EN  +   +D+Y A++
Sbjct: 528 EEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582


>AT3G17370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5949006-5949644 REVERSE
           LENGTH=212
          Length = 212

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAY 215
           + + + E      T  YN ++ GLC  GK +++  +   L   GL+P+V TY+ ++  + 
Sbjct: 1   MFKVMRESNMDMDTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMIRFS- 59

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
               +  A KL  ++I RG  P+ ++YN ++ GLCK+ +            A+  S S  
Sbjct: 60  ---SLGRAEKLYAEMIRRGLVPDTITYNSMIHGLCKQNKLAQ---------ARKVSKSCS 107

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           ++N L+   C   R ++   L  EM    +  +V+TY  LI      G    A ++  EM
Sbjct: 108 TFNTLINGYCKATRVKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEM 167

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQ 369
             +G   ++ ++  I+ +LC   ++   V  L Q
Sbjct: 168 VSNGVYSSSITFRDILPQLCSRKELRKAVAMLLQ 201



 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 13/202 (6%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D A    +++ LCK+ K  +A  +   ++ SG+ PD   Y    N + R  ++G A +L 
Sbjct: 13  DTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTY----NMMIRFSSLGRAEKLY 68

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++   G    T+TYN+++ GLC   KL Q+         + +  +  T++ L+ G  K 
Sbjct: 69  AEMIRRGLVPDTITYNSMIHGLCKQNKLAQA---------RKVSKSCSTFNTLINGYCKA 119

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             V + M L  ++  RG   N+++Y  L+ G  + G    A+++F+++ + G   S +++
Sbjct: 120 TRVKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSNGVYSSSITF 179

Query: 278 NILLRSLCYEGRWEEANGLLAE 299
             +L  LC      +A  +L +
Sbjct: 180 RDILPQLCSRKELRKAVAMLLQ 201



 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 50/229 (21%)

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAML 388
           F+V+ E   S  ++    YN II  LCK GK D        ++     P+  TYN +   
Sbjct: 2   FKVMRE---SNMDMDTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMIR- 57

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
                       F SLG  +                         ++  EM + G  PD+
Sbjct: 58  ------------FSSLGRAE-------------------------KLYAEMIRRGLVPDT 80

Query: 449 YTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
            TY+S++ G+C++  L +A ++ +             +N LI G+CK  R    + +F  
Sbjct: 81  ITYNSMIHGLCKQNKLAQARKVSK---------SCSTFNTLINGYCKATRVKDGMNLFCE 131

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDR 557
           M  +G V N ITYT L+ G     + + A  + +E+    V S S   R
Sbjct: 132 MYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSNGVYSSSITFR 180



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           D A Y  +++ LC+ G    A  +   +   G Q    TYN +++       L ++ +L 
Sbjct: 13  DTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMIR----FSSLGRAEKLY 68

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             + ++GL P+  TY+ ++ G  K+  + +A K+           +  ++N L+ G CK 
Sbjct: 69  AEMIRRGLVPDTITYNSMIHGLCKQNKLAQARKV---------SKSCSTFNTLINGYCKA 119

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
            R +D + LF ++  +G   +V++Y  L+      G +  A  +  EM    +  S +T+
Sbjct: 120 TRVKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSNGVYSSSITF 179

Query: 313 NILITSLSLHGRTEQAFEVL 332
             ++  L       +A  +L
Sbjct: 180 RDILPQLCSRKELRKAVAML 199



 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 49/260 (18%)

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +F+ +           YNI++  LC  G+++EA  +   +    L P V TYN++I   S
Sbjct: 1   MFKVMRESNMDMDTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMIRFSS 60

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
           L GR E+ +    EM R G      +YN +I  LCK+ K                     
Sbjct: 61  L-GRAEKLYA---EMIRRGLVPDTITYNSMIHGLCKQNK--------------------- 95

Query: 381 TYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
                  L +  KV ++   F +L               I+  C+         +  EM 
Sbjct: 96  -------LAQARKVSKSCSTFNTL---------------INGYCKATRVKDGMNLFCEMY 133

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           + G   +  TY++L+ G  + G  + AL+IF+ +  N        +  ++   C   R +
Sbjct: 134 RRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSNGVYSSSITFRDILPQLC--SRKE 191

Query: 501 LSIEIFQRMVNKGCVPNEIT 520
           L   +   +     V N +T
Sbjct: 192 LRKAVAMLLQKSSMVSNNVT 211



 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 19/188 (10%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G +PDV Q   ++       +A K    M   +  G++PD   Y  +++ LC++  +  A
Sbjct: 44  GLQPDV-QTYNMMIRFSSLGRAEKLYAEM---IRRGLVPDTITYNSMIHGLCKQNKLAQA 99

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
            ++ +            T+NTL+ G C   ++   + L   + ++G+  NV TY+ L+ G
Sbjct: 100 RKVSKSCS---------TFNTLINGYCKATRVKDGMNLFCEMYRRGIVANVITYTTLIHG 150

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             +    + A+ +  ++++ G   + +++  +L  LC       A+ +           S
Sbjct: 151 FRQVGDFNTALDIFQEMVSNGVYSSSITFRDILPQLCSRKELRKAVAMLLQ------KSS 204

Query: 274 VVSYNILL 281
           +VS N+ L
Sbjct: 205 MVSNNVTL 212



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 435 MLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFC 494
           M   M +     D+  Y+ ++ G+C+ G  DEA  IF  L  +   PD+  YN +I    
Sbjct: 1   MFKVMRESNMDMDTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMI---- 56

Query: 495 KYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKE 543
           ++     + +++  M+ +G VP+ ITY  ++ GL  +N+L  A  + K 
Sbjct: 57  RFSSLGRAEKLYAEMIRRGLVPDTITYNSMIHGLCKQNKLAQARKVSKS 105



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +G  PD      +++ LCK NK  +A +V +           + +  L+N  C+   
Sbjct: 71  MIRRGLVPDTITYNSMIHGLCKQNKLAQARKVSK---------SCSTFNTLINGYCKATR 121

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +   M L  ++   G     +TY TL+ G    G  N +L +   +   G+  +  T+  
Sbjct: 122 VKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIFQEMVSNGVYSSSITFRD 181

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
           +L      + + +A+ +L        + ++VS NV L
Sbjct: 182 ILPQLCSRKELRKAVAMLLQ------KSSMVSNNVTL 212


>AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:448336-450642 REVERSE LENGTH=768
          Length = 768

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/465 (20%), Positives = 195/465 (41%), Gaps = 51/465 (10%)

Query: 95  QKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
           ++ D+A    ++ +L +S    KAV +   +  SG     +    L+     +       
Sbjct: 51  KRDDLAWNEIVMVNL-RSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGR 109

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
           Q+   V   G ++     N+L+     +GKL  S ++ + +  +    N+ +++ +L   
Sbjct: 110 QIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDR----NLSSWNSILSSY 165

Query: 215 YKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSV 274
            K   VD+A+ LLD++   G +P++V++N LL+G   +G ++DAI + + +   G  PS 
Sbjct: 166 TKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPST 225

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDL----------------------------- 305
            S + LL+++   G  +    +   +    L                             
Sbjct: 226 SSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDM 285

Query: 306 --SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLV 363
             + ++V +N L++ LS     + A  ++  M + G    A ++N + +     GK +  
Sbjct: 286 MDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKA 345

Query: 364 VQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
           +  + +M  +  +PN  ++ AI   C + G  + A  +F  +  +   P       ++ +
Sbjct: 346 LDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405

Query: 423 -----LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
                L   G     F +     +     D+Y  ++LV    + G L  A+EIF  ++  
Sbjct: 406 LGCLSLLHSGKEVHGFCL-----RKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNK 460

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYT 522
                + ++N +++G+  + R +  I  F  M+  G  P+ IT+T
Sbjct: 461 ----SLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFT 501



 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 188/422 (44%), Gaps = 29/422 (6%)

Query: 120 RVMEMIVGSGII------PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYN 173
           R + + +  G+I       D    +  + F  R  ++G+A +L +++ +       + +N
Sbjct: 3   RFLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRD----DLAWN 58

Query: 174 TLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR 233
            +V      G   ++++L   +   G K    T   LL+    + G  E  ++   ++  
Sbjct: 59  EIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRL 118

Query: 234 GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           G E N+   N L+    + G+ E + ++F  +  +  S    S+N +L S    G  ++A
Sbjct: 119 GLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLS----SWNSILSSYTKLGYVDDA 174

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
            GLL EM+   L P +VT+N L++  +  G ++ A  VL  M  +G   + +S + ++  
Sbjct: 175 IGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQA 234

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA------IAMLCEQGKVQEAFFIFQSLGNK 407
           + + G + L  + +   I R    N+  Y+       I M  + G +  A  +F  +  K
Sbjct: 235 VAEPGHLKLG-KAIHGYILR----NQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAK 289

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                +    +++S L        A  ++  M K G  PD+ T++SL  G    G  ++A
Sbjct: 290 NIVAWN----SLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKA 345

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
           L++   ++E    P++ ++ A+  G  K      ++++F +M  +G  PN  T + L++ 
Sbjct: 346 LDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405

Query: 528 LA 529
           L 
Sbjct: 406 LG 407



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 187/421 (44%), Gaps = 29/421 (6%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           DA   L+ M   G KP  +  + LL  + +    +    +   I+ + +  D    T L+
Sbjct: 208 DAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLI 267

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           +   + G + YA  + + ++        V +N+LV GL     L  +  L+ R+ K+G+K
Sbjct: 268 DMYIKTGYLPYARMVFDMMDAKNI----VAWNSLVSGLSYACLLKDAEALMIRMEKEGIK 323

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           P+  T++ L  G       ++A+ ++  +  +G  PN+VS+  + +G  K G   +A+++
Sbjct: 324 PDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKV 383

Query: 262 FRDLPAKGFSPSVVSYNILLR-----SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILI 316
           F  +  +G  P+  + + LL+     SL + G+  E +G       ++L         L+
Sbjct: 384 FIKMQEEGVGPNAATMSTLLKILGCLSLLHSGK--EVHGFCL---RKNLICDAYVATALV 438

Query: 317 TSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYS 376
                 G  + A E+   +     N +  S+N ++      G+ +  +     M+     
Sbjct: 439 DMYGKSGDLQSAIEIFWGIK----NKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGME 494

Query: 377 PNEGTYNAIAMLCE-QGKVQEAFFIFQSLGNKQN-CPMHDYCKNVISMLCRKGNTYPAFQ 434
           P+  T+ ++  +C+  G VQE +  F  + ++    P  ++C  ++ +L R G    A+ 
Sbjct: 495 PDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWD 554

Query: 435 MLYEMTKCGFTPDSYTYSSLVRG--MCREGMLDE-ALEIFRILEEN---DYMPDIDNYNA 488
            +  M+     PD+  + + +    + R+  L E A +  ++LE +   +YM  I+ Y+ 
Sbjct: 555 FIQTMS---LKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSN 611

Query: 489 L 489
           L
Sbjct: 612 L 612



 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 153/384 (39%), Gaps = 24/384 (6%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L DA   +  M  +G KPD      L        K  KA+ V+  +   G+ P+   +T 
Sbjct: 307 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 366

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           + +   + GN   A+++  K++E G      T +TL+K L     L+   ++     +K 
Sbjct: 367 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKN 426

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           L  + +  + L++   K   +  A+++   I  +    +L S+N +L G    GR E+ I
Sbjct: 427 LICDAYVATALVDMYGKSGDLQSAIEIFWGIKNK----SLASWNCMLMGYAMFGRGEEGI 482

Query: 260 ELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITS 318
             F  +   G  P  +++  +L      G  +E       M     + P++   + ++  
Sbjct: 483 AAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDL 542

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP- 377
           L   G  ++A++ +  M+       AT +   ++  CK  + DL +  +     +   P 
Sbjct: 543 LGRSGYLDEAWDFIQTMS---LKPDATIWGAFLSS-CKIHR-DLELAEIAWKRLQVLEPH 597

Query: 378 NEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV-----ISMLCRKGNTYP- 431
           N   Y  +  L       E     ++L       + D    +     + +   +G T+P 
Sbjct: 598 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPD 657

Query: 432 -------AFQMLYEMTKCGFTPDS 448
                   ++++ EM K G+ PD+
Sbjct: 658 EGDIYFELYKLVSEMKKSGYVPDT 681


>AT1G10270.1 | Symbols: GRP23 | glutamine-rich protein 23 |
           chr1:3363535-3366276 FORWARD LENGTH=913
          Length = 913

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 157/354 (44%), Gaps = 11/354 (3%)

Query: 128 SGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHG-FQTGTVTYNTLVKGLCSHGKLN 186
           S I+P+   Y  ++N  C  GN+  A+++   +  +  F   +VTY  L KGL   G++ 
Sbjct: 210 SNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIG 269

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLL 246
            +  LL  +  KG   +   Y+ L+ G       D+A++  D++ ++    + +     +
Sbjct: 270 DAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVNATFM 329

Query: 247 TGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
               ++G  ++A+E +R L  K F     + N+LL      G+ +EA  L  EM +    
Sbjct: 330 EYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAP 389

Query: 307 PSVVTYN-----ILITSLSLHGRTEQAF----EVLDEMTRSGFNVTATSYNPIIARLCKE 357
           P++++ N     I++      G   +A     +V  ++T   F +    Y  I+ R C++
Sbjct: 390 PNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRFCEQ 449

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYC 416
           G +    +   + + R    +  ++ A I    +  ++ +A  +   + +     + D+ 
Sbjct: 450 GMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFG 509

Query: 417 KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
             V   L + G    + ++L +M +    PD   Y  +VRG+C    LD+A +I
Sbjct: 510 ARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDI 563



 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 22/353 (6%)

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
           V+ L     L+ + +L  +      +P VFT + ++   Y+ +   E++ L      +  
Sbjct: 152 VQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSN 211

Query: 236 -EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG-FSPSVVSYNILLRSLCYEGRWEEA 293
             PN+VSYN ++   C EG  ++A+E++R + A   F+PS V+Y  L + L   GR  +A
Sbjct: 212 IVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDA 271

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             LL EM  +  +     YN LI      G  ++A E  DE+         T Y+ I+  
Sbjct: 272 ASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSK-----CTVYDGIVNA 326

Query: 354 LCKE-----GKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNK 407
              E     G     ++    ++ +++  +  T N +  +  + GK  EA+ +F  + + 
Sbjct: 327 TFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDN 386

Query: 408 QNCPM-----HDYCKNVISMLCRKGNTYPAFQML----YEMTKCGFTPDSYTYSSLVRGM 458
              P       D    +++   + G    A         ++T   F  D   Y ++V   
Sbjct: 387 HAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRF 446

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           C +GML EA   F          D  ++ A+I  + K +R D ++++  RMV+
Sbjct: 447 CEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVD 499



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 136/348 (39%), Gaps = 48/348 (13%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSG-IIPDAACYTHLVNFLCRRGNIGYAMQ 155
           P+V    Q++   C      +A+ V   I+ +    P +  Y HL   L + G IG A  
Sbjct: 214 PNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDAAS 273

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-----GLKPNVFTYSFL 210
           L+ ++   G    +  YN L++G    G  +++++  D L  K     G+    F   + 
Sbjct: 274 LLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVNATFMEYWF 333

Query: 211 LEGAYKE-----RGV-------------------------DEAMKLLDDIIARGGEPNLV 240
            +G  KE     R +                         DEA  L ++++     PN++
Sbjct: 334 EKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAPPNIL 393

Query: 241 SYNVLLTGLC-----KEGRTEDAIELFRDLPAKGFS-PSVVSY----NILLRSLCYEGRW 290
           S N    G+      K G   +AI  F+ + +K  S P V+ Y    NI+ R  C +G  
Sbjct: 394 SVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTR-FCEQGML 452

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
            EA    AE     L     ++  +I +     R + A ++LD M      V A     +
Sbjct: 453 TEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFGARV 512

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEA 397
              L K GK+    + L +M  R   P+   Y+ +   LC+   + +A
Sbjct: 513 FGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQA 560



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR-ILEE 476
           N +  L R  +   A ++  +       P  +T ++++  M R     E++ +F+   ++
Sbjct: 150 NRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQYFFKQ 209

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQR-MVNKGCVPNEITYTILVEGLAFENELD 535
           ++ +P++ +YN +I   C     D ++E+++  + N    P+ +TY  L +GL     + 
Sbjct: 210 SNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIG 269

Query: 536 IAAGLMKELYMREVLSRSTV 555
            AA L++E+  +   + STV
Sbjct: 270 DAASLLREMLSKGQAADSTV 289



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 3/179 (1%)

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQN 409
           +  L +   +D   +   Q +     P   T NAI A +    +  E+  +FQ    + N
Sbjct: 152 VQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSN 211

Query: 410 -CPMHDYCKNVISMLCRKGNTYPAFQMLYE-MTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
             P       +I+  C +GN   A ++    +    F P S TY  L +G+ + G + +A
Sbjct: 212 IVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDA 271

Query: 468 LEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
             + R +       D   YN LI G+      D ++E F  + +K  V + I     +E
Sbjct: 272 ASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVNATFME 330


>AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:493683-495158 FORWARD
           LENGTH=491
          Length = 491

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 19/276 (6%)

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT---YSFLLEGAYKERGVDEAMKLLDDIIA 232
           V  LCS  +  +S     RL      P+ F    ++ LL    +E+ + +A  +   +  
Sbjct: 154 VAKLCSVRQTVESFWKFKRLV-----PDFFDTACFNALLRTLCQEKSMTDARNVYHSL-K 207

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
              +P+L ++N+LL+G       E   E  +    KG  P VV+YN L+   C +   E+
Sbjct: 208 HQFQPDLQTFNILLSGWKSSEEAEAFFEEMK---GKGLKPDVVTYNSLIDVYCKDREIEK 264

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIA 352
           A  L+ +M EE+ +P V+TY  +I  L L G+ ++A EVL EM   G      +YN  I 
Sbjct: 265 AYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIR 324

Query: 353 RLCKEGKVDLVVQCLDQMICRRYSPNEGTYN----AIAMLCEQGKVQEAFFIFQSLGNKQ 408
             C   ++    + +D+M+ +  SPN  TYN     +++  + G+  E +   + LGN +
Sbjct: 325 NFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELY--VRMLGN-E 381

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
             P    C  +I M  R      A ++  +M   GF
Sbjct: 382 CLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGF 417



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 153/354 (43%), Gaps = 54/354 (15%)

Query: 89  YMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVG------------------SGI 130
           Y++G+ +K D  Q  +LL +  + +++  + R M++++G                    +
Sbjct: 116 YILGRNRKFD--QIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRL 173

Query: 131 IPD---AACYTHLVNFLCRRGNIGYAMQLVEKVEEH------------------------ 163
           +PD    AC+  L+  LC+  ++  A  +   ++                          
Sbjct: 174 VPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 233

Query: 164 -------GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
                  G +   VTYN+L+   C   ++ ++ +L+D++ ++   P+V TY+ ++ G   
Sbjct: 234 FEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGL 293

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVS 276
               D+A ++L ++   G  P++ +YN  +   C   R  DA +L  ++  KG SP+  +
Sbjct: 294 IGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATT 353

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           YN+  R L        +  L   M   +  P+  +   LI     H + + A  + ++M 
Sbjct: 354 YNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMV 413

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCE 390
             GF   +   + ++  LC   KV+   +CL +M+ + + P+  ++  I +L E
Sbjct: 414 VKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLME 467



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M GKG KPDV     L+   CK  +  KA ++++ +      PD   YT ++  L   G 
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
              A +++++++E+G       YN  ++  C   +L  + +L+D + KKGL PN  TY+ 
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKG 269
                     +  + +L   ++     PN  S   L+    +  + + A+ L+ D+  KG
Sbjct: 357 FFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKG 416

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F    +  ++LL  LC   + EEA   L EM E+   PS V++  +   + L  + ++  
Sbjct: 417 FGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVN 476

Query: 330 EVLDEMT 336
            ++ +M 
Sbjct: 477 NLIQKMA 483



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 252 EGRTEDAIELFRDLPA-KGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED---LSP 307
            G     +E +R   A +GF  S  S + +L  L    ++++   LL E   +D   +SP
Sbjct: 85  HGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKRKDRSLISP 144

Query: 308 SVVTYNI-LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
             +   +  +  L    +T ++F     +    F+     +N ++  LC+E K     + 
Sbjct: 145 RTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTAC--FNALLRTLCQE-KSMTDARN 201

Query: 367 LDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRK 426
           +   +  ++ P+  T+N   +L      +EA   F+ +  K   P      ++I + C+ 
Sbjct: 202 VYHSLKHQFQPDLQTFNI--LLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKD 259

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
                A++++ +M +   TPD  TY++++ G+   G  D+A E+ + ++E    PD+  Y
Sbjct: 260 REIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAY 319

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYM 546
           NA I  FC  +R   + ++   MV KG  PN  TY +    L+  N+L    G   ELY+
Sbjct: 320 NAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDL----GRSWELYV 375

Query: 547 R 547
           R
Sbjct: 376 R 376



 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/375 (20%), Positives = 150/375 (40%), Gaps = 51/375 (13%)

Query: 181 SHGKLNQSLQLLDRLTK-KGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           SHG   Q+L+     +  +G   + F+   +L    + R  D+  +LL  I  +  + +L
Sbjct: 84  SHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELL--IETKRKDRSL 141

Query: 240 VSYNVL------LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           +S   +      +  LC   +T ++   F+ L    F  +   +N LLR+LC E    +A
Sbjct: 142 ISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTAC--FNALLRTLCQEKSMTDA 199

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIAR 353
             +   +  +   P + T+NIL+                     SG+  +  +       
Sbjct: 200 RNVYHSLKHQ-FQPDLQTFNILL---------------------SGWKSSEEAEAFFEEM 237

Query: 354 LCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPM 412
             K  K D+V                 TYN+ I + C+  ++++A+ +   +  ++  P 
Sbjct: 238 KGKGLKPDVV-----------------TYNSLIDVYCKDREIEKAYKLIDKMREEEETPD 280

Query: 413 HDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
                 VI  L   G    A ++L EM + G  PD   Y++ +R  C    L +A ++  
Sbjct: 281 VITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVD 340

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFEN 532
            + +    P+   YN              S E++ RM+   C+PN  +   L++      
Sbjct: 341 EMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHE 400

Query: 533 ELDIAAGLMKELYMR 547
           ++D+A  L +++ ++
Sbjct: 401 KVDMAMRLWEDMVVK 415


>AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9472763-9474803 FORWARD
           LENGTH=656
          Length = 656

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 180/408 (44%), Gaps = 36/408 (8%)

Query: 146 RRGNIGYAMQLVEKVEEHGFQT-GTVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPN 203
           R G+I  A+++      HG +   T+T+N+L+ G+     ++ ++ QL D + +    P+
Sbjct: 73  RSGDIDGALRVF-----HGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPE----PD 123

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
            F+Y+ +L    +    ++A    D    R    +  S+N ++TG  + G  E A ELF 
Sbjct: 124 TFSYNIMLSCYVRNVNFEKAQSFFD----RMPFKDAASWNTMITGYARRGEMEKARELFY 179

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSP--SVVTYNILITSLSL 321
            +  K    + VS+N ++      G  E+A+          ++P   VV +  +IT    
Sbjct: 180 SMMEK----NEVSWNAMISGYIECGDLEKASHFF------KVAPVRGVVAWTAMITGYMK 229

Query: 322 HGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT 381
             + E A  +  +MT    N    ++N +I+   +  + +  ++    M+     PN   
Sbjct: 230 AKKVELAEAMFKDMT---VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286

Query: 382 YNAIAMLC-EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMT 440
            ++  + C E   +Q    I Q +     C       ++ISM C+ G    A+++   M 
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK 346

Query: 441 KCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTD 500
           K     D   +++++ G  + G  D+AL +FR + +N   PD   + A++L        +
Sbjct: 347 K----KDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402

Query: 501 LSIEIFQRMVNKGCV-PNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           + +  F+ MV    V P    YT +V+ L    +L+ A  L++ +  R
Sbjct: 403 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450



 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 137/330 (41%), Gaps = 21/330 (6%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           DAA +  ++    RRG +  A +L   + E       V++N ++ G    G L ++    
Sbjct: 154 DAASWNTMITGYARRGEMEKARELFYSMME----KNEVSWNAMISGYIECGDLEKASHFF 209

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
                +G    V  ++ ++ G  K + V+ A  +  D+       NLV++N +++G  + 
Sbjct: 210 KVAPVRG----VVAWTAMITGYMKAKKVELAEAMFKDMTV---NKNLVTWNAMISGYVEN 262

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
            R ED ++LFR +  +G  P+    +  L         +    +   + +  L   V   
Sbjct: 263 SRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTAL 322

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
             LI+     G    A+++ + M +        ++N +I+   + G  D  +    +MI 
Sbjct: 323 TSLISMYCKCGELGDAWKLFEVMKKK----DVVAWNAMISGYAQHGNADKALCLFREMID 378

Query: 373 RRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTY 430
            +  P+  T+ A+ + C   G V      F+S+       P  D+   ++ +L R G   
Sbjct: 379 NKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLE 438

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
            A +++  M    F P +  + +L+ G CR
Sbjct: 439 EALKLIRSMP---FRPHAAVFGTLL-GACR 464



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 133/332 (40%), Gaps = 65/332 (19%)

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
           D LTK   +  +F  + ++    +   +D A+++   + A+    N +++N LL G+ K+
Sbjct: 50  DYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKD 105

Query: 253 -GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT 311
             R  +A +LF ++P     P   SYNI+L        +E+A      M  +D      +
Sbjct: 106 PSRMMEAHQLFDEIP----EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKD----AAS 157

Query: 312 YNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
           +N +IT  +  G  E+A E+   M          S+N +I+   + G ++          
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEK----NEVSWNAMISGYIECGDLEKASHFF---- 209

Query: 372 CRRYSPNEGTYNAIAMLC---EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
             + +P  G     AM+    +  KV+ A  +F+ +   +N                   
Sbjct: 210 --KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNL------------------ 249

Query: 429 TYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
                                T+++++ G       ++ L++FR + E    P+    ++
Sbjct: 250 --------------------VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSS 289

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
            +LG  +     L  +I Q +V+K  + N++T
Sbjct: 290 ALLGCSELSALQLGRQIHQ-IVSKSTLCNDVT 320


>AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:6951349-6952845 REVERSE
           LENGTH=498
          Length = 498

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 6/254 (2%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVM-EMIVGSGIIPDAACYTHLVNFLCRRG 148
           M+GK  KP+      ++    +  +     R+  EM    G  P+   Y  L+   C RG
Sbjct: 237 MIGK-IKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARG 295

Query: 149 NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYS 208
            +  A ++ E+++  G     V YNT++ GLCS+ ++ ++ +L   +  KG++    TY 
Sbjct: 296 LMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYE 355

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLC--KEG-RTEDAIELFRDL 265
            L+ G  K   VD  + +  ++  +G E + ++   L+ GLC  ++G R  +A ++ +D 
Sbjct: 356 HLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDA 415

Query: 266 PAKG-FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGR 324
             +  F PS   Y +L++ LC +G+ + A  + AEM  +   PS  TY   I    + G 
Sbjct: 416 VREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVGD 475

Query: 325 TEQAFEVLDEMTRS 338
            E +  +  EM  S
Sbjct: 476 EETSALLAIEMAES 489



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 155/359 (43%), Gaps = 54/359 (15%)

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
           F +  L++     + +D A+ ++  + +RG    + + N L+T + +     +  +++R+
Sbjct: 163 FVFDLLIKSCLDSKEIDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYRE 222

Query: 265 L---------PAKG----FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVV 310
           +          AK       P+  ++N ++ S   EG  E    +  EM+EE   SP+V 
Sbjct: 223 VFGLDDVSVDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVY 282

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           +YN+L+ +    G   +A +V +EM   G      +YN +I  LC               
Sbjct: 283 SYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCS-------------- 328

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRKGNT 429
                                 +V +A  +F+ +G K   C    Y +++++  C+ G+ 
Sbjct: 329 --------------------NFEVVKAKELFRDMGLKGIECTCLTY-EHLVNGYCKAGDV 367

Query: 430 YPAFQMLYEMTKCGFTPDSYTYSSLVRGMC--REGM-LDEALEIFR-ILEENDYMPDIDN 485
                +  EM + GF  D  T  +LV G+C  R+G  + EA +I +  + E  + P  + 
Sbjct: 368 DSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDAVREAMFYPSRNC 427

Query: 486 YNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           Y  L+   C+  + D ++ I   MV KG  P++ TY   ++G     + + +A L  E+
Sbjct: 428 YELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVGDEETSALLAIEM 486



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK-GLKPNVFTYSFLLEGAYKERGV-DE 222
            +    T+N+++      G+     ++   + ++ G  PNV++Y+ L+E AY  RG+  E
Sbjct: 241 IKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLME-AYCARGLMSE 299

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A K+ +++  RG   ++V+YN ++ GLC       A ELFRD+  KG   + ++Y  L+ 
Sbjct: 300 AEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVN 359

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFE----VLDEMTRS 338
             C  G  +    +  EM  +      +T   L+  L      ++  E    V D +  +
Sbjct: 360 GYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDAVREA 419

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA 384
            F  +   Y  ++ RLC++GK+D  +    +M+ + + P++ TY A
Sbjct: 420 MFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRA 465



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 44/322 (13%)

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLV------KGLCSHGKLNQSLQLLDRLT----KK- 198
           I  A+ ++ K+   G      T N L+      +G  +  K+ + +  LD ++    KK 
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDDVSVDEAKKM 237

Query: 199 --GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIAR-GGEPNLVSYNVLLTGLCKEGRT 255
              +KPN  T++ ++   Y+E   +   ++  ++    G  PN+ SYNVL+   C  G  
Sbjct: 238 IGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLM 297

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNIL 315
            +A +++ ++  +G    +V+YN ++  LC      +A  L  +M  + +  + +TY  L
Sbjct: 298 SEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHL 357

Query: 316 ITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRY 375
           +      G  +    V  EM R GF     +   ++  LC +     VV+  D +     
Sbjct: 358 VNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIV----- 412

Query: 376 SPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
                          +  V+EA F           P  +  + ++  LC  G    A  +
Sbjct: 413 ---------------KDAVREAMFY----------PSRNCYELLVKRLCEDGKMDRALNI 447

Query: 436 LYEMTKCGFTPDSYTYSSLVRG 457
             EM   GF P   TY + + G
Sbjct: 448 QAEMVGKGFKPSQETYRAFIDG 469



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 33/216 (15%)

Query: 88  EYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRR 147
           E M  +G   D+     ++  LC + +  KA  +   +   GI      Y HLVN  C+ 
Sbjct: 305 EEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKA 364

Query: 148 GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTY 207
           G++   + +  +++  GF+   +T   LV+GLC      + ++  D + K  ++  +F  
Sbjct: 365 GDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAAD-IVKDAVREAMFY- 422

Query: 208 SFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA 267
                                        P+   Y +L+  LC++G+ + A+ +  ++  
Sbjct: 423 -----------------------------PSRNCYELLVKRLCEDGKMDRALNIQAEMVG 453

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLLA-EMDE 302
           KGF PS  +Y   +      G  EE + LLA EM E
Sbjct: 454 KGFKPSQETYRAFIDGYGIVGD-EETSALLAIEMAE 488


>AT2G18520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8034036-8035292 REVERSE
           LENGTH=418
          Length = 418

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 44/318 (13%)

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRT---EDAIELFRDLPAKGFSPSVVSYNILLRSLCY 286
           I +    P + +   L T +   GR    + A+++F ++   G   +VVS+N LL +  +
Sbjct: 90  IESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLH 149

Query: 287 EGRWEEANGLLAEMDEE--DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
              +E    L  E  +   +++P  ++Y +LI S    G+ E+A E++ +M   G  VT 
Sbjct: 150 SDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTI 209

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSL 404
            ++  I+  L K G VD                                  EA  ++  +
Sbjct: 210 IAFTTILGSLYKNGLVD----------------------------------EAESLWIEM 235

Query: 405 GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
            NK  C + +   NV  M   K +     +++ EM+  G  PD+ +Y+ L+   C +GM+
Sbjct: 236 VNK-GCDLDNTVYNVRLMNAAKESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMM 294

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EA +++  LE+    P+   +  LI   C     D  + +F++      +P+  T   L
Sbjct: 295 SEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHL 350

Query: 525 VEGLAFENELDIAAGLMK 542
            EGL   N ++ A G+ +
Sbjct: 351 TEGLVKNNRMEDARGVAR 368



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 15/280 (5%)

Query: 173 NTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           +TL++        + ++++ + + K G    V +++ LL         +   +L D+   
Sbjct: 106 STLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQ 165

Query: 233 RGGE--PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           R     P+ +SY +L+   C  G+ E A+E+ RD+  KG   +++++  +L SL   G  
Sbjct: 166 RYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLV 225

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           +EA  L  EM  +        YN+ + + +     E+  E+++EM+  G      SYN +
Sbjct: 226 DEAESLWIEMVNKGCDLDNTVYNVRLMNAAKES-PERVKELMEEMSSVGLKPDTVSYNYL 284

Query: 351 IARLCKEG---KVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGN 406
           +   C +G   +   V + L+Q       PN  T+   I  LC  G   +   +F+    
Sbjct: 285 MTAYCVKGMMSEAKKVYEGLEQ-------PNAATFRTLIFHLCINGLYDQGLTVFKKSAI 337

Query: 407 KQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTP 446
               P    CK++   L  K N     + +  + K  F P
Sbjct: 338 VHKIPDFKTCKHLTEGLV-KNNRMEDARGVARIVKKKFPP 376



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           ++Y  L+K  C  GK  ++++++  +  KG++  +  ++ +L   YK   VDEA  L  +
Sbjct: 175 ISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIE 234

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           ++ +G + +   YNV L    KE   E   EL  ++ + G  P  VSYN L+ + C +G 
Sbjct: 235 MVNKGCDLDNTVYNVRLMNAAKES-PERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGM 293

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
             EA  +   +++    P+  T+  LI  L ++G  +Q   V 
Sbjct: 294 MSEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVF 332



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 5/164 (3%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           I PD   Y  L+   C  G    AM+++  +E  G +   + + T++  L  +G ++++ 
Sbjct: 170 ITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAE 229

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            L   +  KG   +   Y+  L  A KE   +   +L++++ + G +P+ VSYN L+T  
Sbjct: 230 SLWIEMVNKGCDLDNTVYNVRLMNAAKE-SPERVKELMEEMSSVGLKPDTVSYNYLMTAY 288

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
           C +G   +A +++  L      P+  ++  L+  LC  G +++ 
Sbjct: 289 CVKGMMSEAKKVYEGLE----QPNAATFRTLIFHLCINGLYDQG 328



 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 17/248 (6%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD      L+   C S K  KA+ +M  +   G+      +T ++  L + G +  A  L
Sbjct: 172 PDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESL 231

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
             ++   G       YN  +          +  +L++ ++  GLKP+  +Y++L+  AY 
Sbjct: 232 WIEMVNKGCDLDNTVYNVRLMNAAKESP-ERVKELMEEMSSVGLKPDTVSYNYLM-TAYC 289

Query: 217 ERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
            +G + EA K+ + +     +PN  ++  L+  LC  G  +  + +F+        P   
Sbjct: 290 VKGMMSEAKKVYEGL----EQPNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFK 345

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVT-YNILITSLSLHGR--------TE 326
           +   L   L    R E+A G +A + ++   P +VT +  L   L L+ +        + 
Sbjct: 346 TCKHLTEGLVKNNRMEDARG-VARIVKKKFPPRLVTEWKKLEEKLGLYSKGNAAAVSSSS 404

Query: 327 QAFEVLDE 334
           Q  EVLD+
Sbjct: 405 QTREVLDQ 412


>AT3G25210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9180348-9181487 FORWARD
           LENGTH=379
          Length = 379

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 86/153 (56%)

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNV 244
           L+    L  ++   G+ P+ F  + +++   K   VDEA+++  ++   G EPN  +Y+ 
Sbjct: 204 LHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSY 263

Query: 245 LLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
           L+ G+C++GR    +  ++++  KG  P+   Y +L+ SL  E R +EA  ++ +M    
Sbjct: 264 LVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDMLANS 323

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           LSP ++TYN ++T L   GR  +A E+++E  +
Sbjct: 324 LSPDMLTYNTVLTELCRGGRGSEALEMVEEWKK 356



 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 132 PDAACYTHLVNFLCRRGN--------IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHG 183
           PD   YT L++ L +R N        +     L ++++ +G    T   N ++K      
Sbjct: 178 PDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCL 237

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           ++++++++   +   G +PN +TYS+L++G  ++  V + +    ++  +G  PN   Y 
Sbjct: 238 EVDEAIRVFKEMALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYM 297

Query: 244 VLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE 303
           VL+  L  E R ++A+E+  D+ A   SP +++YN +L  LC  GR  EA  ++ E  + 
Sbjct: 298 VLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKR 357

Query: 304 D 304
           D
Sbjct: 358 D 358



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 103/214 (48%), Gaps = 10/214 (4%)

Query: 156 LVEKVEEHGFQTGTVTYNTLVKGLCSHGKL-NQSLQLLDRLTKKG-LKPNVFTYSFLLEG 213
           L+E+V     +     YN +++  C    L N++  + +++ +    KP++ TY+ LL  
Sbjct: 130 LIEEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSS 189

Query: 214 AYKERG--------VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
             K           +     L   + + G  P+    N+++    K    ++AI +F+++
Sbjct: 190 LLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEM 249

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
              G  P+  +Y+ L++ +C +GR  +  G   EM  + + P+   Y +LI SLS+  R 
Sbjct: 250 ALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRL 309

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           ++A EV+ +M  +  +    +YN ++  LC+ G+
Sbjct: 310 DEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGR 343



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 35/179 (19%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G  PD      ++    K  +  +A+RV + +   G  P+A  Y++LV  +C +G 
Sbjct: 214 MKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYLVKGVCEKGR 273

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSF 209
           +G                                   Q L     +  KG+ PN   Y  
Sbjct: 274 VG-----------------------------------QGLGFYKEMQVKGMVPNGSCYMV 298

Query: 210 LLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
           L+     ER +DEA++++ D++A    P++++YN +LT LC+ GR  +A+E+  +   +
Sbjct: 299 LICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKR 357



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 432 AFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALIL 491
           A ++  EM   G  P++YTYS LV+G+C +G + + L  ++ ++    +P+   Y  LI 
Sbjct: 242 AIRVFKEMALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLIC 301

Query: 492 GFCKYQRTDLSIEIFQRMVNKGCVPNEITY-TILVE 526
                +R D ++E+   M+     P+ +TY T+L E
Sbjct: 302 SLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTE 337



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%)

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ 497
           +M   G  PD++  + +++   +   +DEA+ +F+ +      P+   Y+ L+ G C+  
Sbjct: 213 QMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYLVKGVCEKG 272

Query: 498 RTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           R    +  ++ M  KG VPN   Y +L+  L+ E  LD A  ++ ++
Sbjct: 273 RVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDM 319



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 393 KVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
           +V EA  +F+ +   G++ N   + Y   ++  +C KG          EM   G  P+  
Sbjct: 238 EVDEAIRVFKEMALYGSEPNAYTYSY---LVKGVCEKGRVGQGLGFYKEMQVKGMVPNGS 294

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
            Y  L+  +  E  LDEA+E+   +  N   PD+  YN ++   C+  R   ++E+ +  
Sbjct: 295 CYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEW 354

Query: 510 VNKGCVPNEITYTILVEGLAFENE 533
             +  V  E  Y  L++ + F N+
Sbjct: 355 KKRDPVMGERNYRTLMDEVYFLNK 378


>AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23587613-23588220 FORWARD
           LENGTH=152
          Length = 152

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 79/137 (57%)

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           P   TY+ +++G  K+  VD+A ++LD + ++G  P++V+++ L+ G CK  R ++ +E+
Sbjct: 8   PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 67

Query: 262 FRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSL 321
           F ++  +G   + V+Y  L+   C  G  + A  LL EM    ++P  +T++ ++  L  
Sbjct: 68  FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCS 127

Query: 322 HGRTEQAFEVLDEMTRS 338
                +AF +L+++ +S
Sbjct: 128 KKELRKAFAILEDLQKS 144



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 78/136 (57%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           T+TYN+++ G C   +++ + ++LD +  KG  P+V T+S L+ G  K + VD  M++  
Sbjct: 10  TITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFC 69

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
           ++  RG   N V+Y  L+ G C+ G  + A +L  ++ + G +P  ++++ +L  LC + 
Sbjct: 70  EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKK 129

Query: 289 RWEEANGLLAEMDEED 304
              +A  +L ++ + +
Sbjct: 130 ELRKAFAILEDLQKSE 145



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 72/136 (52%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           I P    Y  +++  C++  +  A ++++ +   G     VT++TL+ G C   +++  +
Sbjct: 6   IFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGM 65

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           ++   + ++G+  N  TY+ L+ G  +   +D A  LL+++I+ G  P+ ++++ +L GL
Sbjct: 66  EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGL 125

Query: 250 CKEGRTEDAIELFRDL 265
           C +     A  +  DL
Sbjct: 126 CSKKELRKAFAILEDL 141



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 272 PSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           P+ ++YN ++   C + R ++A  +L  M  +  SP VVT++ LI       R +   E+
Sbjct: 8   PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 67

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCE 390
             EM R G      +Y  +I   C+ G +D     L++MI    +P+  T++  +A LC 
Sbjct: 68  FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCS 127

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHD 414
           + ++++AF I + L   ++  + D
Sbjct: 128 KKELRKAFAILEDLQKSEDHHLED 151



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%)

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
           M +    P + TY+S++ G C++  +D+A  +   +      PD+  ++ LI G+CK +R
Sbjct: 1   MLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKR 60

Query: 499 TDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            D  +EIF  M  +G V N +TYT L+ G     +LD A  L+ E+
Sbjct: 61  VDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM 106



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 66/134 (49%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P       ++   CK ++   A R+++ +   G  PD   ++ L+N  C+   +   M++
Sbjct: 8   PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 67

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
             ++   G    TVTY TL+ G C  G L+ +  LL+ +   G+ P+  T+  +L G   
Sbjct: 68  FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCS 127

Query: 217 ERGVDEAMKLLDDI 230
           ++ + +A  +L+D+
Sbjct: 128 KKELRKAFAILEDL 141



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 61/121 (50%)

Query: 237 PNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           P  ++YN ++ G CK+ R +DA  +   + +KG SP VV+++ L+   C   R +    +
Sbjct: 8   PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 67

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
             EM    +  + VTY  LI      G  + A ++L+EM   G      +++ ++A LC 
Sbjct: 68  FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCS 127

Query: 357 E 357
           +
Sbjct: 128 K 128



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%)

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
           ++I   C++     A +ML  M   G +PD  T+S+L+ G C+   +D  +EIF  +   
Sbjct: 15  SMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 74

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIA 537
             + +   Y  LI GFC+    D + ++   M++ G  P+ IT+  ++ GL  + EL  A
Sbjct: 75  GIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKA 134

Query: 538 AGLMKELYMRE 548
             ++++L   E
Sbjct: 135 FAILEDLQKSE 145



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 65/126 (51%)

Query: 72  DQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGII 131
           D   K+ R++DA   L+ M  KG  PDV   + L+   CK+ +    + +   +   GI+
Sbjct: 18  DGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIV 77

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQL 191
            +   YT L++  C+ G++  A  L+ ++   G     +T++ ++ GLCS  +L ++  +
Sbjct: 78  ANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAI 137

Query: 192 LDRLTK 197
           L+ L K
Sbjct: 138 LEDLQK 143



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 335 MTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGK 393
           M R     T  +YN +I   CK+ +VD   + LD M  +  SP+  T++  I   C+  +
Sbjct: 1   MLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKR 60

Query: 394 VQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
           V     IF  +  +           +I   C+ G+   A  +L EM  CG  PD  T+  
Sbjct: 61  VDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHC 120

Query: 454 LVRGMCREGMLDEALEIFRILEEND 478
           ++ G+C +  L +A  I   L++++
Sbjct: 121 MLAGLCSKKELRKAFAILEDLQKSE 145



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 374 RYS--PNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           R+S  P   TYN+ I   C+Q +V +A  +  S+ +K   P       +I+  C+     
Sbjct: 3   RWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVD 62

Query: 431 PAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALI 490
              ++  EM + G   ++ TY++L+ G C+ G LD A ++   +      PD   ++ ++
Sbjct: 63  NGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCML 122

Query: 491 LGFC 494
            G C
Sbjct: 123 AGLC 126


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 176/413 (42%), Gaps = 56/413 (13%)

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T L+NF C+ G I YA    E V +  F+   VT+N ++ G    G +  ++ +   +  
Sbjct: 313 TSLLNFYCKVGLIEYA----EMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRL 368

Query: 198 KGLKPNVFTYSFLLEGAYKER-----------------------------------GVDE 222
           + LK +  T + L+  A +                                      + +
Sbjct: 369 EKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVD 428

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A K+ D  +    E +L+ +N LL    + G + +A+ LF  +  +G  P+V+++N+++ 
Sbjct: 429 AKKVFDSTV----EKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIIL 484

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
           SL   G+ +EA  +  +M    + P+++++  ++  +  +G +E+A   L +M  SG   
Sbjct: 485 SLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRP 544

Query: 343 TATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGT---YNAIAMLCEQGKVQEAFF 399
            A S    ++  C       + + +   I R    +       + + M  + G + +A  
Sbjct: 545 NAFSITVALSA-CAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEK 603

Query: 400 IFQSLGNK--QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
           +F   G+K     P+ +    +IS     GN   A  +   +   G  PD+ T ++++  
Sbjct: 604 VF---GSKLYSELPLSN---AMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSA 657

Query: 458 MCREGMLDEALEIFR-ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
               G +++A+EIF  I+ +    P +++Y  ++        T+ ++ + + M
Sbjct: 658 CNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEM 710



 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 170/380 (44%), Gaps = 23/380 (6%)

Query: 163 HGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD- 221
           H F++  V  +T++      G +  + ++ D   +K L      ++ LL  AY E G+  
Sbjct: 404 HSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDL----ILWNTLL-AAYAESGLSG 458

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           EA++L   +   G  PN++++N+++  L + G+ ++A ++F  + + G  P+++S+  ++
Sbjct: 459 EALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMM 518

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITS----LSLH-GRTEQAFEVLDEMT 336
             +   G  EEA   L +M E  L P+  +  + +++     SLH GRT   + ++  + 
Sbjct: 519 NGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGY-IIRNLQ 577

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQE 396
            S      TS   + A+     K + V         + YS    +   I+     G ++E
Sbjct: 578 HSSLVSIETSLVDMYAKCGDINKAEKVFG------SKLYSELPLSNAMISAYALYGNLKE 631

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEM-TKCGFTPDSYTYSSLV 455
           A  +++SL      P +    NV+S     G+   A ++  ++ +K    P    Y  +V
Sbjct: 632 AIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMV 691

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCV 515
             +   G  ++AL   R++EE  + PD     +L+    K ++T+L ++   R + +   
Sbjct: 692 DLLASAGETEKAL---RLIEEMPFKPDARMIQSLVASCNKQRKTEL-VDYLSRKLLESEP 747

Query: 516 PNEITYTILVEGLAFENELD 535
            N   Y  +    A E   D
Sbjct: 748 ENSGNYVTISNAYAVEGSWD 767



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 181/437 (41%), Gaps = 56/437 (12%)

Query: 108 DLCKSNKARKAVR----VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEH 163
           ++CK+  A K  R    V   +V SG+       + L +   + G +  A ++ +++ + 
Sbjct: 178 NVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDR 237

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
                 V +N L+ G   +GK  ++++L   + K+G++P   T S  L  +    GV+E 
Sbjct: 238 N----AVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG 293

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
            +     I  G E + +    LL   CK G  E A  +F  +    F   VV++N+++  
Sbjct: 294 KQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRM----FEKDVVTWNLIISG 349

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
              +G  E+A  +   M  E L    VT   L T +S   RTE                 
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVT---LATLMSAAARTEN---------------- 390

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA---IAMLCEQGKVQEAFFI 400
                    +L KE      VQC     C R+S       A   + M  + G + +A  +
Sbjct: 391 --------LKLGKE------VQCY----CIRHSFESDIVLASTVMDMYAKCGSIVDAKKV 432

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           F S   K     +     +++     G +  A ++ Y M   G  P+  T++ ++  + R
Sbjct: 433 FDSTVEKDLILWN----TLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLR 488

Query: 461 EGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEIT 520
            G +DEA ++F  ++ +  +P++ ++  ++ G  +   ++ +I   ++M   G  PN  +
Sbjct: 489 NGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFS 548

Query: 521 YTILVEGLAFENELDIA 537
            T+ +   A    L I 
Sbjct: 549 ITVALSACAHLASLHIG 565



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 136/322 (42%), Gaps = 37/322 (11%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLV 157
           D+     LL    +S  + +A+R+   +   G+ P+   +  ++  L R G +  A  + 
Sbjct: 440 DLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMF 499

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG---- 213
            +++  G     +++ T++ G+  +G   +++  L ++ + GL+PN F+ +  L      
Sbjct: 500 LQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHL 559

Query: 214 ----------AYKERGVDEAMKL-----LDDIIARGGEPN-------------LVSYNVL 245
                      Y  R +  +  +     L D+ A+ G+ N             L   N +
Sbjct: 560 ASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAM 619

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM-DEED 304
           ++     G  ++AI L+R L   G  P  ++   +L +  + G   +A  +  ++  +  
Sbjct: 620 ISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRS 679

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
           + P +  Y +++  L+  G TE+A  +++EM    F   A     ++A   K+ K +L V
Sbjct: 680 MKPCLEHYGLMVDLLASAGETEKALRLIEEMP---FKPDARMIQSLVASCNKQRKTEL-V 735

Query: 365 QCLDQMICRRYSPNEGTYNAIA 386
             L + +      N G Y  I+
Sbjct: 736 DYLSRKLLESEPENSGNYVTIS 757



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 133/298 (44%), Gaps = 19/298 (6%)

Query: 251 KEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVV 310
           K G  +DA ++F ++P +    + V++N L+      G+ EEA  L ++M ++ + P+ V
Sbjct: 220 KCGVLDDASKVFDEIPDR----NAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRV 275

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           T +  +++ +  G  E+  +       +G  +       ++   CK G ++      D+M
Sbjct: 276 TVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRM 335

Query: 371 ICRRYSPNEGTYN-AIAMLCEQGKVQEAFFIFQSL---GNKQNCPMHDYCKNVISMLCRK 426
               +  +  T+N  I+   +QG V++A ++ Q +     K +C        ++S   R 
Sbjct: 336 ----FEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVT---LATLMSAAART 388

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
            N     ++     +  F  D    S+++    + G + +A ++F    E D +     +
Sbjct: 389 ENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLIL----W 444

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           N L+  + +   +  ++ +F  M  +G  PN IT+ +++  L    ++D A  +  ++
Sbjct: 445 NTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQM 502


>AT3G61360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22704630-22706126 REVERSE
           LENGTH=498
          Length = 498

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 144/321 (44%), Gaps = 11/321 (3%)

Query: 132 PDAACYTHLVNFLCRRGNIGYAMQLVE---KVEEHGFQT--GTVTYNTLVKGLCSHGKLN 186
           P+   +  +   LC+    G   + +E   K+E+  F+   G   +N L++  C+  ++ 
Sbjct: 134 PNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNILLRAFCTEREMK 193

Query: 187 QSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL-DDIIARGGEPNLVSYNVL 245
           ++  + ++L  +   P+V T + LL G +KE G   A +L   +++ RG +PN V+Y + 
Sbjct: 194 EARSIFEKLHSR-FNPDVKTMNILLLG-FKEAGDVTATELFYHEMVKRGFKPNSVTYGIR 251

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL 305
           + G CK+    +A+ LF D+    F  +V     L+          +A  L  E+ +  L
Sbjct: 252 IDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGL 311

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL--CKEGKVDLV 363
           +P    YN L++SL   G    A +V+ EM   G    + +++ +   +   KE   + V
Sbjct: 312 TPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGV 371

Query: 364 VQCLDQMICRRYSPNEGTYNAI-AMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
            +   +M  R   P   T   +  + C  G+V     +++ +  K  CP     + + + 
Sbjct: 372 CEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKGYCPHGHALELLTTA 431

Query: 423 LCRKGNTYPAFQMLYEMTKCG 443
           LC +     AF+  ++  + G
Sbjct: 432 LCARRRANDAFECSWQTVERG 452



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 17/322 (5%)

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSY---NVLLTGLCKEGRTEDAIELFRDLPAKGFSPS- 273
           R  D+A  L+ ++  R   PNL+S+   ++LL  + K G  E+ +E F  +  + F    
Sbjct: 117 RYFDQAWALMAEV--RKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKF 174

Query: 274 -VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            V  +NILLR+ C E   +EA  +  ++     +P V T NIL+      G         
Sbjct: 175 GVDEFNILLRAFCTEREMKEARSIFEKLHSR-FNPDVKTMNILLLGFKEAGDVTATELFY 233

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG 392
            EM + GF   + +Y   I   CK+      ++  + M    +   + T   +  L    
Sbjct: 234 HEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDF---DITVQILTTLIHGS 290

Query: 393 KVQ----EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            V     +A  +F  +  +   P       ++S L + G+   A +++ EM + G  PDS
Sbjct: 291 GVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDS 350

Query: 449 YTYSSLVRGM--CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
            T+ S+  GM   +E   +   E ++ ++E   +P       L+  FC     +L ++++
Sbjct: 351 VTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLW 410

Query: 507 QRMVNKGCVPNEITYTILVEGL 528
           + M+ KG  P+     +L   L
Sbjct: 411 KYMLEKGYCPHGHALELLTTAL 432



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 2/253 (0%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PDV     LL    ++            +V  G  P++  Y   ++  C++ N G A++L
Sbjct: 208 PDVKTMNILLLGFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRL 267

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
            E ++   F        TL+ G        ++ QL D ++K+GL P+   Y+ L+    K
Sbjct: 268 FEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMK 327

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL--CKEGRTEDAIELFRDLPAKGFSPSV 274
              V  A+K++ ++  +G EP+ V+++ +  G+   KE       E ++ +  +   P  
Sbjct: 328 CGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKT 387

Query: 275 VSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE 334
            +  +L++  C+ G       L   M E+   P      +L T+L    R   AFE   +
Sbjct: 388 PTIVMLMKLFCHNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDAFECSWQ 447

Query: 335 MTRSGFNVTATSY 347
               G  V+   Y
Sbjct: 448 TVERGRCVSEPVY 460



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 2/170 (1%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           KA ++ + I   G+ PD   Y  L++ L + G++  A+++++++EE G +  +VT++++ 
Sbjct: 298 KARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMF 357

Query: 177 KGLCSHGK--LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
            G+    +   N   +   ++ ++ L P   T   L++       V+  + L   ++ +G
Sbjct: 358 IGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKG 417

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
             P+  +  +L T LC   R  DA E       +G   S   Y +L  SL
Sbjct: 418 YCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEPVYRMLETSL 467


>AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8177215-8179743 REVERSE
           LENGTH=842
          Length = 842

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/454 (20%), Positives = 178/454 (39%), Gaps = 42/454 (9%)

Query: 117 KAVRVMEMIVGSGIIP-DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           +AV + E     G    +   Y  ++  L +     Y   L +++   G +    TY TL
Sbjct: 169 RAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTL 228

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGG 235
           +      G    +L  L +++K G++P+  T   +L+   K R   +A +          
Sbjct: 229 IDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDEN 288

Query: 236 EPNL------VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           + +        +YN ++    K G+ ++A E F+ +  +G  P+ V++N ++      G+
Sbjct: 289 KADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQ 348

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
             E   L+  M +   +P   TYNILI+  + +   E+A     EM   G      SY  
Sbjct: 349 LGEVTSLMKTM-KLHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRT 407

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQ 408
           ++        V+     + +M       +E T +A+  M  E   +++++  F+      
Sbjct: 408 LLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAG 467

Query: 409 NCPMHDYCKNV--------------ISMLCRKGNTY-------------------PAFQM 435
           N     Y  N+              + + C++ N                      A ++
Sbjct: 468 NMSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACEL 527

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
              M   G TPD  TY++LV+ +    M  +       + E  Y+ D   Y A+I  F K
Sbjct: 528 FESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVK 587

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
             + +++ E+++ MV     P+ + Y +L+   A
Sbjct: 588 LGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 621



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 162/386 (41%), Gaps = 22/386 (5%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           + TYNT++      G++ ++ +   R+ ++G+ P   T++ ++   Y   G    +  L 
Sbjct: 298 SYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIH-IYGNNGQLGEVTSLM 356

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
             +     P+  +YN+L++   K    E A   F+++   G  P  VSY  LL +     
Sbjct: 357 KTMKLHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRH 416

Query: 289 RWEEANGLLAEMDEED----------LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
             EEA GL+AEMD+++          L+   V   +L  S S   R    F V   M+  
Sbjct: 417 MVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKR----FHVAGNMSSE 472

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAF 398
           G++    +Y      L +  +V +  Q +++     Y+     Y  I+  CE+     A 
Sbjct: 473 GYSANIDAYGER-GYLSEAERVFICCQEVNKRTVIEYNVMIKAY-GISKSCEK-----AC 525

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +F+S+ +    P       ++ +L      +     L +M + G+  D   Y +++   
Sbjct: 526 ELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSF 585

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
            + G L+ A E+++ + E +  PD+  Y  LI  F        ++   + M   G   N 
Sbjct: 586 VKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNS 645

Query: 519 ITYTILVEGLAFENELDIAAGLMKEL 544
           + Y  L++       LD A  + ++L
Sbjct: 646 VIYNSLIKLYTKVGYLDEAEAIYRKL 671



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 86  HLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLC 145
           +LE M   G   D      ++    K  +   A  V + +V   I PD   Y  L+N   
Sbjct: 562 YLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFA 621

Query: 146 RRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK---KGLKP 202
             GN+  AM  VE ++E G    +V YN+L+K     G L+++  +  +L +   K   P
Sbjct: 622 DTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYP 681

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +V+T + ++   Y ER +    + + D + + GE N  ++ ++L    K GR E+A ++ 
Sbjct: 682 DVYTSNCMI-NLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYKKNGRFEEATQIA 740

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLH 322
           + +         +SYN +L     +GR++EA     EM    + P   T+  L T L   
Sbjct: 741 KQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKL 800

Query: 323 GRTEQAFEVLDEMTR 337
           G +++A   ++E+ +
Sbjct: 801 GMSKKAVRKIEEIRK 815



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 176/445 (39%), Gaps = 68/445 (15%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           PD      L+    K+N   +A    + +   G+ PD   Y  L+     R  +  A  L
Sbjct: 365 PDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGL 424

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR------LTKKGLKPNVFTYSFL 210
           + ++++   +    T + L +       L +S     R      ++ +G   N+      
Sbjct: 425 IAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANI------ 478

Query: 211 LEGAYKERG-VDEAMKLL---DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
              AY ERG + EA ++     ++  R     ++ YNV++         E A ELF  + 
Sbjct: 479 --DAYGERGYLSEAERVFICCQEVNKR----TVIEYNVMIKAYGISKSCEKACELFESMM 532

Query: 267 AKGFSPSVVSYNILLRSL----------CYEGRWEE------------------------ 292
           + G +P   +YN L++ L          CY  +  E                        
Sbjct: 533 SYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLN 592

Query: 293 -ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPII 351
            A  +  EM E ++ P VV Y +LI + +  G  +QA   ++ M  +G    +  YN +I
Sbjct: 593 MAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLI 652

Query: 352 ARLCKEGKVD---LVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNK 407
               K G +D    + + L Q   +   P+  T N  I +  E+  V++A  IF S+  K
Sbjct: 653 KLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSM--K 710

Query: 408 QNCPMHDYCKNVISMLC---RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
           Q    +++      MLC   + G    A Q+  +M +     D  +Y+S++     +G  
Sbjct: 711 QRGEANEF--TFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRF 768

Query: 465 DEALEIFRILEENDYMPDIDNYNAL 489
            EA+E F+ +  +   PD   + +L
Sbjct: 769 KEAVETFKEMVSSGIQPDDSTFKSL 793



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 125/293 (42%), Gaps = 5/293 (1%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A +L E +  +G      TYNTLV+ L S    ++    L+++ + G   +   Y  ++ 
Sbjct: 524 ACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVIS 583

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              K   ++ A ++  +++    EP++V Y VL+      G  + A+     +   G   
Sbjct: 584 SFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPG 643

Query: 273 SVVSYNILLRSLCYEGRWEEANGL---LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           + V YN L++     G  +EA  +   L +   +   P V T N +I   S      +A 
Sbjct: 644 NSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAE 703

Query: 330 EVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI-AML 388
            + D M + G      ++  ++    K G+ +   Q   QM   +   +  +YN++  + 
Sbjct: 704 AIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLF 762

Query: 389 CEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTK 441
              G+ +EA   F+ + +    P     K++ ++L + G +  A + + E+ K
Sbjct: 763 ALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRK 815



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 117/297 (39%), Gaps = 44/297 (14%)

Query: 256 EDAIELFRDLPAKG-FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNI 314
           E A+E+F    +KG +  +V+ YNI+LR L    +W     L  EM  + + P   TY  
Sbjct: 168 ERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGT 227

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           LI                D  ++ G  V A         LC  GK+  +           
Sbjct: 228 LI----------------DVYSKGGLKVHA---------LCWLGKMSKIGM--------- 253

Query: 375 YSPNEGTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMHDYC------KNVISMLCRKG 427
             P+E T   +  + ++ +  Q+A   F+     +N      C        +I    + G
Sbjct: 254 -QPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSG 312

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
               A +    M + G  P + T+++++      G L E   + + ++ +   PD   YN
Sbjct: 313 QIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLH-CAPDTRTYN 371

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            LI    K    + +   F+ M + G  P+ ++Y  L+   +  + ++ A GL+ E+
Sbjct: 372 ILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEM 428


>AT5G61370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24672008-24673471 REVERSE
           LENGTH=487
          Length = 487

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 23/284 (8%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
            +K D      LL DL K N+A                 D   ++ +   L + G    A
Sbjct: 114 AEKKDHTAMQILLSDLRKENRAM----------------DKQTFSIVAETLVKVGKEEDA 157

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           + + + +++        T   ++  LCS G + ++L ++           +  Y  LL G
Sbjct: 158 IGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGNELSVYRSLLFG 217

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE-------GRTEDAIELFRDLP 266
              +R V EA +++ D+ + G  P+L  +N LLT LC+        G   +A+ +  ++ 
Sbjct: 218 WSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMR 277

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
           +    P+ +SYNILL  L    R  E+  +L +M      P   +Y  ++  L L GR  
Sbjct: 278 SYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFG 337

Query: 327 QAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           +  +++DEM   GF      Y  +I  LC   +V+  +Q  ++M
Sbjct: 338 KGNQIVDEMIERGFRPERKFYYDLIGVLCGVERVNFALQLFEKM 381



 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 9/261 (3%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           L K  K   A+ + +++       D    T +++ LC RG++  A+ ++   ++      
Sbjct: 148 LVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGNE 207

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD------- 221
              Y +L+ G      + ++ +++  +   G+ P++F ++ LL     ER V+       
Sbjct: 208 LSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLT-CLCERNVNRNPSGLV 266

Query: 222 -EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNIL 280
            EA+ ++ ++ +   +P  +SYN+LL+ L +  R  ++ ++   +   G  P   SY  +
Sbjct: 267 PEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFV 326

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
           +R L   GR+ + N ++ EM E    P    Y  LI  L    R   A ++ ++M RS  
Sbjct: 327 VRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSV 386

Query: 341 NVTATSYNPIIARLCKEGKVD 361
                 Y+ +I +LCK G  +
Sbjct: 387 GGYGQVYDLLIPKLCKGGNFE 407



 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 105 LLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRR-------GNIGYAMQLV 157
           LL+        ++A RV++ +  +GI PD  C+  L+  LC R       G +  A+ ++
Sbjct: 214 LLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIM 273

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKE 217
            ++  +  Q  +++YN L+  L    ++ +S Q+L+++ + G  P+  +Y F++   Y  
Sbjct: 274 LEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLT 333

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
               +  +++D++I RG  P    Y  L+  LC   R   A++LF  +           Y
Sbjct: 334 GRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVY 393

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           ++L+  LC  G +E+   L  E    D++ S
Sbjct: 394 DLLIPKLCKGGNFEKGRELWEEALSIDVTLS 424



 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 18/274 (6%)

Query: 166 QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMK 225
           QT ++   TLVK     GK   ++ +   L K     + FT + ++        V  A+ 
Sbjct: 139 QTFSIVAETLVKV----GKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALG 194

Query: 226 LLD---DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           ++    D+I+ G E  L  Y  LL G   +   ++A  + +D+ + G +P +  +N LL 
Sbjct: 195 VMHHHKDVIS-GNE--LSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLT 251

Query: 283 SLCYE-------GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            LC         G   EA  ++ EM    + P+ ++YNIL++ L    R  ++ ++L++M
Sbjct: 252 CLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQM 311

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG-TYNAIAMLCEQGKV 394
            RSG +    SY  ++  L   G+     Q +D+MI R + P     Y+ I +LC   +V
Sbjct: 312 KRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVERV 371

Query: 395 QEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGN 428
             A  +F+ +              +I  LC+ GN
Sbjct: 372 NFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGN 405



 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 15/248 (6%)

Query: 98  DVAQATQLLYDLCKSNKARKAVRVM----EMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           D    T ++  LC     ++A+ VM    ++I G+    + + Y  L+     + N+  A
Sbjct: 172 DGFTVTAIISALCSRGHVKRALGVMHHHKDVISGN----ELSVYRSLLFGWSVQRNVKEA 227

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSH-------GKLNQSLQLLDRLTKKGLKPNVFT 206
            ++++ ++  G       +N+L+  LC         G + ++L ++  +    ++P   +
Sbjct: 228 RRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMS 287

Query: 207 YSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLP 266
           Y+ LL    + R V E+ ++L+ +   G +P+  SY  ++  L   GR     ++  ++ 
Sbjct: 288 YNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMI 347

Query: 267 AKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTE 326
            +GF P    Y  L+  LC   R   A  L  +M    +      Y++LI  L   G  E
Sbjct: 348 ERGFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFE 407

Query: 327 QAFEVLDE 334
           +  E+ +E
Sbjct: 408 KGRELWEE 415



 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 113/283 (39%), Gaps = 51/283 (18%)

Query: 277 YNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA---FEVLD 333
           +N +LR L  +        LL+++ +E+ +    T++I+  +L   G+ E A   F++LD
Sbjct: 106 FNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSIVAETLVKVGKEEDAIGIFKILD 165

Query: 334 EMT--RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
           + +  + GF VTA                                        I+ LC +
Sbjct: 166 KFSCPQDGFTVTAI---------------------------------------ISALCSR 186

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
           G V+ A  +     +  +       ++++     + N   A +++ +M   G TPD + +
Sbjct: 187 GHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCF 246

Query: 452 SSLVRGMCRE-------GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
           +SL+  +C         G++ EAL I   +      P   +YN L+    + +R   S +
Sbjct: 247 NSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQ 306

Query: 505 IFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           I ++M   GC P+  +Y  +V  L           ++ E+  R
Sbjct: 307 ILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIER 349


>AT3G48250.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:17870064-17871929 REVERSE
           LENGTH=621
          Length = 621

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 144/310 (46%), Gaps = 20/310 (6%)

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN--IGYAMQLVEKVEEHGFQTG 168
           KS    + V++ E ++     P     + L+ +L    N  +    ++  K E  G    
Sbjct: 310 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 369

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
              Y+ + + L S G+ +++ ++   +   G +P+  TYS L+ G  K + ++EA  +LD
Sbjct: 370 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 429

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            + A+G  P++ ++ +L+ G CK    + A+  F ++  KGF       ++L+       
Sbjct: 430 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDVLIDGFVIHN 489

Query: 289 RWEEANGLLAEM-DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
           ++E A+  L EM    ++ P   TY +LI  L    ++E+A ++L  M +  +   A ++
Sbjct: 490 KFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEAF 549

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTY-NAIAMLCEQGKVQEA---FFIFQS 403
           +  +A+    G ++   + LD ++  + SP+   Y + I     +G++ +A    FI   
Sbjct: 550 DGYLAKF---GTLEDAKKFLD-VLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFI--- 602

Query: 404 LGNKQNCPMH 413
                 CP H
Sbjct: 603 ------CPHH 606



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G +PD    +QL++ LCK+ +  +A  V++ +   G  PD   +T L+   C+   
Sbjct: 396 MRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNE 455

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLN-QSLQLLDRLTKKGLKPNVFTYS 208
           +  A+     + E GF   +   + L+ G   H K    S+ L++ +    +KP   TY 
Sbjct: 456 LDKALACFANMLEKGFDIDSNLLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYK 515

Query: 209 FLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG-LCKEGRTEDAIELFRDLPA 267
            L++   K +  +EA+    D++    + N  +Y     G L K G  EDA +    L +
Sbjct: 516 LLIDKLLKIKKSEEAL----DLLQMMKKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSS 571

Query: 268 KGFSPSVVSYNILLRSLCYEGRWEEANGLL 297
           K  SPS  +Y  ++ +   EGR  +A  LL
Sbjct: 572 KD-SPSFAAYFHVIEAFYREGRLTDAKNLL 600



 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 212/538 (39%), Gaps = 72/538 (13%)

Query: 28  YSQVLNLRTFSLNK-GFSRVLASAQISISPKDSIFTLPN---WRV----GKNDQKSKEVR 79
           YSQ+      S +K GFS  L+S      P DS   +P+   W+      K D   + V 
Sbjct: 15  YSQISTRSYLSRSKVGFSSNLSS------PLDSFAIVPSRFLWKFRTFSSKPDSMLQLVL 68

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQL-LYDLCKSNK-ARKAVRVMEMIV-GSGIIPDAAC 136
            ND    +E  +   +KPD++   +  +Y L K  K   KA   ++ ++  SG+ P    
Sbjct: 69  ENDWSKEVEEGL---RKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPL 125

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y+ ++  L ++ ++      + ++++ GF     TY T+      +G+L          +
Sbjct: 126 YSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTI------YGEL----------S 169

Query: 197 KKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K+  K +    +   E   KE  +      +  ++ +G               C+  R  
Sbjct: 170 KEKSKADAVAVAHFYERMLKENAMSVVAGEVSAVVTKGDWS------------CEVEREL 217

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL------LAEMDEEDLSPSVV 310
             ++L            V+S N ++R L  E R      L                 S V
Sbjct: 218 QEMKL------------VLSDNFVIRVLK-ELREHPLKALAFFHWVGGGGSSSGYQHSTV 264

Query: 311 TYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           TYN  +  L+      + + V+DEM  +G+++   +Y  +  +  K   +   V+  + M
Sbjct: 265 TYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYM 324

Query: 371 ICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTY 430
           +   + P+    + +          +   +F+ +  K         K V   + R   + 
Sbjct: 325 MDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFR-VSRKYESTGKSLSKAVYDGIHRSLTSV 383

Query: 431 PAFQMLYEMTKC----GFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
             F    E+TK     G+ PD+ TYS LV G+C+   L+EA  +   +E     PDI  +
Sbjct: 384 GRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGCFPDIKTW 443

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
             LI G CK    D ++  F  M+ KG   +     +L++G    N+ + A+  + E+
Sbjct: 444 TILIQGHCKNNELDKALACFANMLEKGFDIDSNLLDVLIDGFVIHNKFEGASIFLMEM 501



 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 20/344 (5%)

Query: 165 FQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAM 224
           +Q  TVTYN  ++ L     + +   ++D +   G   ++ TY  +     K R + E +
Sbjct: 259 YQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQKSRMMAETV 318

Query: 225 KLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF----RDLPAKGFSPSVVSYNIL 280
           KL + ++    +P++   ++LL  L   G     ++L     R   + G S S   Y+ +
Sbjct: 319 KLYEYMMDGPFKPSIQDCSLLLRYLS--GSPNPDLDLVFRVSRKYESTGKSLSKAVYDGI 376

Query: 281 LRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGF 340
            RSL   GR++EA  +   M      P  +TY+ L+  L    R E+A  VLD+M   G 
Sbjct: 377 HRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQGC 436

Query: 341 NVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAF-- 398
                ++  +I   CK  ++D  + C   M+ + +  +    N + +L +   +   F  
Sbjct: 437 FPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDS---NLLDVLIDGFVIHNKFEG 493

Query: 399 ---FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLV 455
              F+ + + N    P     K +I  L +   +  A  +L  M K  +      Y+   
Sbjct: 494 ASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYP----AYAEAF 549

Query: 456 RG-MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQR 498
            G + + G L++A +   +L   D  P    Y  +I  F +  R
Sbjct: 550 DGYLAKFGTLEDAKKFLDVLSSKD-SPSFAAYFHVIEAFYREGR 592



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 5/187 (2%)

Query: 76  KEVRLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAA 135
           K  RL +A   L+ M  +G  PD+   T L+   CK+N+  KA+     ++  G   D+ 
Sbjct: 417 KAKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSN 476

Query: 136 CYTHLVN-FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDR 194
               L++ F+      G ++ L+E V+    +    TY  L+  L    K  ++L LL  
Sbjct: 477 LLDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQM 536

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGR 254
           + K+    N   Y+   +G   + G  E  K   D+++    P+  +Y  ++    +EGR
Sbjct: 537 MKKQ----NYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGR 592

Query: 255 TEDAIEL 261
             DA  L
Sbjct: 593 LTDAKNL 599



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 148/353 (41%), Gaps = 34/353 (9%)

Query: 206 TYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
           TY+  L    +   V E   ++D++   G + +L +Y  +     K     + ++L+  +
Sbjct: 265 TYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYM 324

Query: 266 PAKGFSPSVVSYNILLRSLCYE-----------GRWEEANGLLAEMDEEDLSPSVVTYNI 314
               F PS+   ++LLR L               R  E+ G       + LS +V  Y+ 
Sbjct: 325 MDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTG-------KSLSKAV--YDG 375

Query: 315 LITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRR 374
           +  SL+  GR ++A E+   M  +G+     +Y+ ++  LCK  +++     LDQM  + 
Sbjct: 376 IHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLDQMEAQG 435

Query: 375 YSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAF 433
             P+  T+   I   C+  ++ +A   F ++  K      D   N++ +L      +  F
Sbjct: 436 CFPDIKTWTILIQGHCKNNELDKALACFANMLEKG----FDIDSNLLDVLIDGFVIHNKF 491

Query: 434 Q----MLYEMTK-CGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNA 488
           +     L EM K     P   TY  L+  + +    +EAL++ +++++ +Y    + ++ 
Sbjct: 492 EGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEAFDG 551

Query: 489 LILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
            +  F   +      + F  +++    P+   Y  ++E    E  L  A  L+
Sbjct: 552 YLAKFGTLE----DAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLL 600


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 181/399 (45%), Gaps = 26/399 (6%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G   D A    ++N  C+  ++G A  L +++E    Q   V++NT++ G  S G +++ 
Sbjct: 174 GFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQME----QRDMVSWNTMISGYASVGNMSEI 229

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           L+LL R+   GL+P+  T+   L  +     ++    L   I+  G + ++     L+T 
Sbjct: 230 LKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITM 289

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE--EDLS 306
             K G+ E +  +   +P K     VV + +++  L   GR E+A  + +EM +   DLS
Sbjct: 290 YLKCGKEEASYRVLETIPNK----DVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLS 345

Query: 307 PSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQC 366
              +    ++ S +  G  +    V   + R G+ +   + N +I    K G +D  +  
Sbjct: 346 SEAIAS--VVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVI 403

Query: 367 LDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISML-- 423
            ++M  R       ++NA I+   +   + +A  +F+ +  K    +  +   V+S+L  
Sbjct: 404 FERMNERDLV----SWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSF--TVVSLLQA 457

Query: 424 CRKGNTYPAFQMLYEMTKCGFT-PDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           C      P  ++++ +    F  P S   ++LV    + G L+ A   F    ++    D
Sbjct: 458 CSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCF----DSISWKD 513

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITY 521
           + ++  LI G+  + + D+++EI+   ++ G  PN + +
Sbjct: 514 VVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIF 552



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/441 (19%), Positives = 190/441 (43%), Gaps = 32/441 (7%)

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           ++ +     ++ + ++PD   +  L+        + + + + ++V  +GF +     ++L
Sbjct: 28  KQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSL 87

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARG 234
           V      G L  + ++ + + ++    +V  ++ ++ G Y   G V EA  L++++  +G
Sbjct: 88  VNLYAKFGLLAHARKVFEEMRER----DVVHWTAMI-GCYSRAGIVGEACSLVNEMRFQG 142

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA-KGFSPSVVSYNILLRSLCYEGRWEEA 293
            +P  V+   +L+G+ +  +    ++   D     GF   +   N +L   C      +A
Sbjct: 143 IKPGPVTLLEMLSGVLEITQ----LQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDA 198

Query: 294 NGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP---I 350
             L  +M++ D+    V++N +I+  +  G   +  ++L  M   G      ++     +
Sbjct: 199 KDLFDQMEQRDM----VSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSV 254

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQN 409
              +C + ++  ++ C  Q++   +  +     A I M  + GK + ++ + +++ NK  
Sbjct: 255 SGTMC-DLEMGRMLHC--QIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDV 311

Query: 410 CPMHDYCKNV-ISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEAL 468
                 C  V IS L R G    A  +  EM + G    S   +S+V    + G  D   
Sbjct: 312 -----VCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGA 366

Query: 469 EIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            +   +  + Y  D    N+LI  + K    D S+ IF+RM  +    + +++  ++ G 
Sbjct: 367 SVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNER----DLVSWNAIISGY 422

Query: 529 AFENELDIAAGLMKELYMREV 549
           A   +L  A  L +E+  + V
Sbjct: 423 AQNVDLCKALLLFEEMKFKTV 443



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 172/437 (39%), Gaps = 30/437 (6%)

Query: 85  LHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFL 144
           LH + +V  G   D+   T L+    K  K   + RV+E I       D  C+T +++ L
Sbjct: 267 LHCQ-IVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPN----KDVVCWTVMISGL 321

Query: 145 CRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNV 204
            R G    A+ +  ++ + G    +    ++V      G  +    +   + + G   + 
Sbjct: 322 MRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDT 381

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
              + L+    K   +D+++ + +    R  E +LVS+N +++G  +      A+ LF +
Sbjct: 382 PALNSLITMYAKCGHLDKSLVIFE----RMNERDLVSWNAIISGYAQNVDLCKALLLFEE 437

Query: 265 LPAKGF----SPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +  K      S +VVS   LL++    G       +   +    + P  +    L+   S
Sbjct: 438 MKFKTVQQVDSFTVVS---LLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYS 494

Query: 321 LHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEG 380
             G  E A    D ++         S+  +IA     GK D+ ++   + +     PN  
Sbjct: 495 KCGYLEAAQRCFDSISWK----DVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHV 550

Query: 381 TYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYE 438
            + A+   C   G VQ+   IF S+       P H++   V+ +LCR      AF+   E
Sbjct: 551 IFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKE 610

Query: 439 MTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN-DYMP-DIDNYNALILGFCKY 496
                FT  S     ++   CR     E  +I  I E+  +  P D  +Y  L   F   
Sbjct: 611 ----NFTRPSIDVLGIILDACRANGKTEVEDI--ICEDMIELKPGDAGHYVKLGHSFAAM 664

Query: 497 QRTDLSIEIFQRMVNKG 513
           +R D   E + +M + G
Sbjct: 665 KRWDDVSESWNQMRSLG 681


>AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4954080-4955702 FORWARD
           LENGTH=540
          Length = 540

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 171/401 (42%), Gaps = 63/401 (15%)

Query: 123 EMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
            +I  S   P+      +  +  +       ++L E+    G      ++  ++K     
Sbjct: 60  RLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRF 119

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           G L Q+L     + K G   + +  + +++   K   V+ A K+ D I  R G      +
Sbjct: 120 GILFQAL-----VEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGS----DW 170

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           NV+++G  K G  E+A +LF  +P       VVS+ +++         E A      M E
Sbjct: 171 NVMISGYWKWGNKEEACKLFDMMPEN----DVVSWTVMITGFAKVKDLENARKYFDRMPE 226

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
           +    SVV++N +++  + +G TE A  + ++M R G     T++  +I+  C       
Sbjct: 227 K----SVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVIS-ACS------ 275

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
                       +  +     ++  L ++ +V+   F+  +L       MH  C+++ S 
Sbjct: 276 ------------FRADPSLTRSLVKLIDEKRVRLNCFVKTAL-----LDMHAKCRDIQS- 317

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP- 481
                    A ++  E+   G   +  T+++++ G  R G +  A ++F      D MP 
Sbjct: 318 ---------ARRIFNEL---GTQRNLVTWNAMISGYTRIGDMSSARQLF------DTMPK 359

Query: 482 -DIDNYNALILGFCKYQRTDLSIEIFQRMVNKG-CVPNEIT 520
            ++ ++N+LI G+    +  L+IE F+ M++ G   P+E+T
Sbjct: 360 RNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVT 400



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/499 (21%), Positives = 197/499 (39%), Gaps = 102/499 (20%)

Query: 97  PDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQL 156
           P+V     +     K + A   +R+ E     GI+PDA  +  ++    R G +  A+  
Sbjct: 69  PNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQAL-- 126

Query: 157 VEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT-KKGLKPNVFTYSFLLEGAY 215
              VE+ GF       N ++     H  +  + ++ D+++ +KG   NV     ++ G +
Sbjct: 127 ---VEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNV-----MISGYW 178

Query: 216 KERGVDEAMKLLD-----DIIA----------------------RGGEPNLVSYNVLLTG 248
           K    +EA KL D     D+++                      R  E ++VS+N +L+G
Sbjct: 179 KWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSG 238

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
             + G TEDA+ LF D+   G  P+  ++ I++ +  +         L+  +DE+ +  +
Sbjct: 239 YAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLN 298

Query: 309 VVTYNILITSLSLHGR---TEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
                 L   L +H +    + A  + +E+   G      ++N +I+   + G +    Q
Sbjct: 299 CFVKTAL---LDMHAKCRDIQSARRIFNEL---GTQRNLVTWNAMISGYTRIGDMSSARQ 352

Query: 366 CLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
             D M  R    N  ++N+ IA     G+   A   F+         M DY         
Sbjct: 353 LFDTMPKR----NVVSWNSLIAGYAHNGQAALAIEFFED--------MIDY--------- 391

Query: 425 RKGNTYP-AFQMLYEMTKCGFTPD-------------------SYTYSSLVRGMCREGML 464
             G++ P    M+  ++ CG   D                      Y SL+    R G L
Sbjct: 392 --GDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNL 449

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
            EA  +F  ++E     D+ +YN L   F        ++ +  +M ++G  P+ +TYT +
Sbjct: 450 WEAKRVFDEMKER----DVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSV 505

Query: 525 VEGLAFENELDIAAGLMKE 543
           +            AGL+KE
Sbjct: 506 LTACN-------RAGLLKE 517


>AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:19214445-19215878 REVERSE
           LENGTH=477
          Length = 477

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 8/252 (3%)

Query: 238 NLVSYNVLLTGLCKEGRTED-AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGL 296
           N+ +  ++LT LC +    D A+ + R  P        V+YN+++R    +G    A+ L
Sbjct: 129 NVKTMRIVLT-LCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGDLNIADML 187

Query: 297 LAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCK 356
           + EMD   L P V+TY  +I      G+ + A+ +  EM++    + + +Y+ I+  +CK
Sbjct: 188 IKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCK 247

Query: 357 EGKVDLVVQCLDQMICRR----YSPNEGTYN-AIAMLCEQGKVQEAFFIFQSLGNKQNCP 411
            G ++  ++ L +M         SPN  TY   I   CE+ +V+EA  +   +GN+   P
Sbjct: 248 SGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMP 307

Query: 412 MH-DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                C  +  +L    +     +++ ++ K G    S  +SS    + R    +EA +I
Sbjct: 308 NRVTACVLIQGVLENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMKRWEEAEKI 367

Query: 471 FRILEENDYMPD 482
           FR++      PD
Sbjct: 368 FRLMLVRGVRPD 379



 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 131/301 (43%), Gaps = 43/301 (14%)

Query: 101 QATQLLYDLC-KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEK 159
           +  +++  LC ++N A +A+ V+       +  D   Y  ++     +G++  A  L+++
Sbjct: 131 KTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGDLNIADMLIKE 190

Query: 160 VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG 219
           ++  G     +TY +++ G C+ GK++ + +L   ++K     N  TYS +LEG  K   
Sbjct: 191 MDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGD 250

Query: 220 VDEAMKLLDDIIARGG----EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVV 275
           ++ A++LL ++    G     PN V+Y +++   C++ R E+A+ +   +  +G  P+ V
Sbjct: 251 MERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMPNRV 310

Query: 276 SYNILLR---------------------------SLCYEG---------RWEEANGLLAE 299
           +  +L++                           S C+           RWEEA  +   
Sbjct: 311 TACVLIQGVLENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMKRWEEAEKIFRL 370

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS--YNPIIARLCKE 357
           M    + P  +  + +   L L  R    F +  E+ +     T  S  +  ++  LC++
Sbjct: 371 MLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDIHAVLLLGLCQQ 430

Query: 358 G 358
           G
Sbjct: 431 G 431


>AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:21253817-21255931 FORWARD
           LENGTH=704
          Length = 704

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 189/452 (41%), Gaps = 78/452 (17%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A QL +++ E       V++N LV G   +  + ++  + + + ++    NV +++ +++
Sbjct: 67  ARQLFDEMSERN----VVSWNGLVSGYIKNRMIVEARNVFELMPER----NVVSWTAMVK 118

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G  +E  V EA    + +  R  E N VS+ V+  GL  +GR + A +L+  +P K    
Sbjct: 119 GYMQEGMVGEA----ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK---- 170

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA---F 329
            VV+   ++  LC EGR +EA  +  EM E +    VVT+  +IT    + R + A   F
Sbjct: 171 DVVASTNMIGGLCREGRVDEARLIFDEMRERN----VVTWTTMITGYRQNNRVDVARKLF 226

Query: 330 EVLDEMTRSGFNVTATSY------------------------NPIIARLCKEGKVDLVVQ 365
           EV+ E T   +      Y                        N +I    + G++    +
Sbjct: 227 EVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARR 286

Query: 366 CLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMH------------ 413
             D M  R  +   G   A      + +  + F   Q  G + + P              
Sbjct: 287 VFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLAS 346

Query: 414 -DYCKNVISMLCR---KGNTYPAFQMLYEMTKCG------------FTPDSYTYSSLVRG 457
             Y + V + L R     + Y A  ++    KCG             + D   ++S++ G
Sbjct: 347 LQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISG 406

Query: 458 MCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQ-RTDLSIEIFQRMVNKGCV- 515
               G+ +EAL+IF  +  +  MP+     A IL  C Y  + +  +EIF+ M +K CV 
Sbjct: 407 YASHGLGEEALKIFHEMPSSGTMPNKVTLIA-ILTACSYAGKLEEGLEIFESMESKFCVT 465

Query: 516 PNEITYTILVEGLAFENELDIAAGLMKELYMR 547
           P    Y+  V+ L    ++D A  L++ + ++
Sbjct: 466 PTVEHYSCTVDMLGRAGQVDKAMELIESMTIK 497



 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 136/305 (44%), Gaps = 17/305 (5%)

Query: 79  RLNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           R+ DA    E M     KP +A    ++    +  +  KA RV +++       D A + 
Sbjct: 249 RIEDAEEFFEVM---PMKPVIA-CNAMIVGFGEVGEISKARRVFDLMEDR----DNATWR 300

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            ++    R+G    A+ L  ++++ G +    +  +++    +   L    Q+   L + 
Sbjct: 301 GMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 199 GLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
               +V+  S L+   Y + G     KL+ D   R    +++ +N +++G    G  E+A
Sbjct: 361 QFDDDVYVASVLMT-MYVKCGELVKAKLVFD---RFSSKDIIMWNSIISGYASHGLGEEA 416

Query: 259 IELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED-LSPSVVTYNILIT 317
           +++F ++P+ G  P+ V+   +L +  Y G+ EE   +   M+ +  ++P+V  Y+  + 
Sbjct: 417 LKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476

Query: 318 SLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
            L   G+ ++A E+++ MT       AT +  ++       ++DL  +   + +      
Sbjct: 477 MLGRAGQVDKAMELIESMT---IKPDATVWGALLGACKTHSRLDL-AEVAAKKLFENEPD 532

Query: 378 NEGTY 382
           N GTY
Sbjct: 533 NAGTY 537



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 74/365 (20%)

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSY 242
           GK+N++ +  D L  K +     +++ ++ G +      EA +L D++     E N+VS+
Sbjct: 31  GKINEARKFFDSLQFKAIG----SWNSIVSGYFSNGLPKEARQLFDEM----SERNVVSW 82

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           N L++G  K     +A  +F  +P +    +VVS+  +++    EG   EA  L   M E
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPER----NVVSWTAMVKGYMQEGMVGEAESLFWRMPE 138

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
            +     V++ ++   L   GR ++A ++ D M     +V A++   +I  LC+EG+VD 
Sbjct: 139 RN----EVSWTVMFGGLIDDGRIDKARKLYDMMPVK--DVVAST--NMIGGLCREGRVDE 190

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
                D+M  R    N  T+  +                   G +QN  +          
Sbjct: 191 ARLIFDEMRER----NVVTWTTMIT-----------------GYRQNNRVD--------- 220

Query: 423 LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPD 482
           + RK      F+++ E T+  +T       S++ G    G +++A E F ++     M  
Sbjct: 221 VARK-----LFEVMPEKTEVSWT-------SMLLGYTLSGRIEDAEEFFEVMP----MKP 264

Query: 483 IDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV---EGLAFENE-LDIAA 538
           +   NA+I+GF +      +  +F  M ++    +  T+  ++   E   FE E LD+ A
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDR----DNATWRGMIKAYERKGFELEALDLFA 320

Query: 539 GLMKE 543
            + K+
Sbjct: 321 QMQKQ 325


>AT3G06430.1 | Symbols: EMB2750 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:1956658-1958240
           REVERSE LENGTH=486
          Length = 486

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 147/372 (39%), Gaps = 4/372 (1%)

Query: 99  VAQATQLLYDLCKSNKARKAVRVMEMIVGSGII-PDAACYTHLVNFLCRRGNIGYAMQLV 157
           V   T+ L DL    +  +A+ V +M+       P    Y  L+  L + G    A +L 
Sbjct: 88  VNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLF 147

Query: 158 EKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK-KGLKPNVFTYSFLLEGAYK 216
           +++ E G +     Y  L+        ++ +  +LD++      +P+VFTYS LL+    
Sbjct: 148 DEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVD 207

Query: 217 ERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD-LPAKGFSPSVV 275
               D    L  ++  R   PN V+ N++L+G  + GR +   ++  D L +    P V 
Sbjct: 208 ASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVW 267

Query: 276 SYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
           + NI+L      G+ +       +     + P   T+NILI S       ++   V++ M
Sbjct: 268 TMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 327

Query: 336 TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQ 395
            +  F  T ++YN II      G    +    DQM       +  T+  +        + 
Sbjct: 328 RKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLF 387

Query: 396 EAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLY-EMTKCGFTPDSYTYSSL 454
                   L  K   P +    N +   C K +     + +Y  M +     DS T+  +
Sbjct: 388 HKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIM 447

Query: 455 VRGMCREGMLDE 466
           V    +EGM D+
Sbjct: 448 VEAYEKEGMNDK 459



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 171/407 (42%), Gaps = 16/407 (3%)

Query: 158 EKVEEHGFQTGTV-TYNTLVKGLCSHGKLNQSLQLLDRLTKKGL-KPNVFTYSFLLEGAY 215
           +K++      G V T    +  L +  +  Q+L++ D L ++   +P   TY  LL    
Sbjct: 76  KKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLG 135

Query: 216 KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGF---SP 272
           K    + A KL D+++  G EP +  Y  LL    +    +DA  +   +  K F    P
Sbjct: 136 KSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKM--KSFPQCQP 193

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            V +Y+ LL++     +++  + L  EMDE  ++P+ VT NI+++     GR +Q  +VL
Sbjct: 194 DVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVL 253

Query: 333 DEM-TRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
            +M   +       + N I++     GK+D++    ++       P   T+N +     +
Sbjct: 254 SDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGK 313

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYT 450
            ++ +          K   P       N+I      G+         +M   G   D+ T
Sbjct: 314 KRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKT 373

Query: 451 YSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMV 510
           +  L+ G    G+  + +   ++  + +   +   YNA+I    K         ++ RM 
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMK 433

Query: 511 NKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDR 557
            + CV +  T+ I+VE  A+E E     G+  ++Y  E   +  +DR
Sbjct: 434 ERQCVCDSRTFEIMVE--AYEKE-----GMNDKIYYLEQERQKLMDR 473


>AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:18226954-18229600
           REVERSE LENGTH=850
          Length = 850

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 52/373 (13%)

Query: 126 VGSGIIPDAACYTHLVNFLCR---RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSH 182
           + SG++ D  C   LV+   +    G++    ++ +++E+H      +++  L+ G   +
Sbjct: 296 IRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHS----VMSWTALITGYMKN 349

Query: 183 GKL-NQSLQLLDRLTKKG-LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLV 240
             L  +++ L   +  +G ++PN FT+S   +            ++L     RG   N  
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 241 SYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
             N +++   K  R EDA   F  L  K    ++VSYN  L   C    +E+A  LL+E+
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFESLSEK----NLVSYNTFLDGTCRNLNFEQAFKLLSEI 465

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
            E +L  S  T+  L++ ++  G   +  ++  ++ + G +      N +I+   K G +
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query: 361 DL-------------------------------VVQCLDQMICRRYSPNEGTYNAIAMLC 389
           D                                V++  +QMI     PNE TY AI   C
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585

Query: 390 EQ-GKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPD 447
              G V E +  F S+       P  ++   ++ +LCR G    AF+ +  M    F  D
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP---FQAD 642

Query: 448 SYTYSSLVRGMCR 460
              + + + G CR
Sbjct: 643 VLVWRTFL-GACR 654



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 110/558 (19%), Positives = 212/558 (37%), Gaps = 125/558 (22%)

Query: 80  LNDAFLHLEYMVGKGQKP-DVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYT 138
           L  A   L+ M   G +P D    + LL    ++   R    V   ++   I PD+  Y 
Sbjct: 42  LRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYN 101

Query: 139 HLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKK 198
            L++   + G+   A  + E +   G +   V+++ ++    ++G+   ++++     + 
Sbjct: 102 SLISLYSKSGDSAKAEDVFETMRRFG-KRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160

Query: 199 GLKPNVFTYS--------------------FLLEGAYKERGVDEAMKLLD---------- 228
           GL PN + Y+                    FL++  + E  V     L+D          
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFE 220

Query: 229 ---DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLC 285
               +  +  E N+V++ +++T   + G   +AI  F D+   GF     + + +  S C
Sbjct: 221 NAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF-SAC 279

Query: 286 YE----------GRWEEANGLLAEMD----------EEDLS-------------PSVVTY 312
            E            W   +GL+ +++            D S              SV+++
Sbjct: 280 AELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSW 339

Query: 313 NILITSLSLH-GRTEQAFEVLDEMTRSGF----NVTATSYNPIIARLC--KEGKVDLVVQ 365
             LIT    +     +A  +  EM   G     + T +S       L   + GK     Q
Sbjct: 340 TALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK-----Q 394

Query: 366 CLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
            L Q   R  + N    N+ I+M  +  ++++A   F+SL  K     + +    +   C
Sbjct: 395 VLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTF----LDGTC 450

Query: 425 RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM----------------------CRE- 461
           R  N   AF++L E+T+      ++T++SL+ G+                      C + 
Sbjct: 451 RNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510

Query: 462 ------------GMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
                       G +D A  +F  +E  + +    ++ ++I GF K+      +E F +M
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVI----SWTSMITGFAKHGFAIRVLETFNQM 566

Query: 510 VNKGCVPNEITYTILVEG 527
           + +G  PNE+TY  ++  
Sbjct: 567 IEEGVKPNEVTYVAILSA 584



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/255 (19%), Positives = 103/255 (40%), Gaps = 46/255 (18%)

Query: 120 RVMEMIVGS----GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           RV + ++G     G+  +++    +++   +   +  A +  E + E       V+YNT 
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNL----VSYNTF 445

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG- 234
           + G C +    Q+ +LL  +T++ L  + FT++ LL G      + +  ++   ++  G 
Sbjct: 446 LDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505

Query: 235 --GEP----------------------------NLVSYNVLLTGLCKEGRTEDAIELFRD 264
              +P                            N++S+  ++TG  K G     +E F  
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQ 565

Query: 265 LPAKGFSPSVVSYNILLRSLCYEG----RWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +  +G  P+ V+Y  +L +  + G     W   N +    ++  + P +  Y  ++  L 
Sbjct: 566 MIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMY---EDHKIKPKMEHYACMVDLLC 622

Query: 321 LHGRTEQAFEVLDEM 335
             G    AFE ++ M
Sbjct: 623 RAGLLTDAFEFINTM 637


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 171/419 (40%), Gaps = 22/419 (5%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLC---SHGKLNQSL 189
           D   +  L++   R G     + L+ K+   G    T    +++K  C   + G + + +
Sbjct: 213 DQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGM 272

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
            +     K G++ ++   + LL+   K   + EA+KL   + ++    N+V+YN +++G 
Sbjct: 273 AIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSK----NVVTYNAMISGF 328

Query: 250 CKEGRTED-----AIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEED 304
            +     D     A +LF D+  +G  PS  +++++L++       E    + A + + +
Sbjct: 329 LQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNN 388

Query: 305 LSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVV 364
                   + LI   +L G TE   +     ++        S+  +I    +  +++   
Sbjct: 389 FQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDI----ASWTSMIDCHVQNEQLESAF 444

Query: 365 QCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK-NVISML 423
               Q+      P E T + +   C       +    Q    K         K + ISM 
Sbjct: 445 DLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMY 504

Query: 424 CRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDI 483
            + GN   A Q+  E+      PD  TYS+++  + + G  +EAL IF  ++ +   P+ 
Sbjct: 505 AKSGNMPLANQVFIEVQN----PDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQ 560

Query: 484 DNYNALILGFCKYQRTDLSIEIFQRMVNKGCV-PNEITYTILVEGLAFENELDIAAGLM 541
             +  +++  C        ++ FQ M N   + PNE  +T LV+ L     L  A  L+
Sbjct: 561 QAFLGVLIACCHGGLVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLI 619



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 164/413 (39%), Gaps = 58/413 (14%)

Query: 145 CRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNV 204
           C+   +G+A QL +++ E       +++N+L+ G    G   Q+++L     +  LK + 
Sbjct: 93  CKCRELGFARQLFDRMPERNI----ISFNSLISGYTQMGFYEQAMELFLEAREANLKLDK 148

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRD 264
           FTY+  L                                    G C E    D  EL   
Sbjct: 149 FTYAGAL------------------------------------GFCGERCDLDLGELLHG 172

Query: 265 L-PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           L    G S  V   N+L+      G+ ++A  L    DE D     V++N LI+     G
Sbjct: 173 LVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERD----QVSWNSLISGYVRVG 228

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLC---KEGKVD--LVVQCLDQMICRRYSPN 378
             E+   +L +M R G N+T  +   ++   C    EG ++  + + C    +   +   
Sbjct: 229 AAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIV 288

Query: 379 EGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM--LCRKGNTYPAFQML 436
             T   + M  + G ++EA  +F  + +K     +      + M  +  + ++  AF++ 
Sbjct: 289 VRT-ALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASS-EAFKLF 346

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            +M + G  P   T+S +++       L+   +I  ++ +N++  D    +ALI  +   
Sbjct: 347 MDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALM 406

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKELYMREV 549
             T+  ++ F     +       ++T +++      +L+ A  L ++L+   +
Sbjct: 407 GSTEDGMQCFASTSKQDIA----SWTSMIDCHVQNEQLESAFDLFRQLFSSHI 455


>AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:24011315-24012919 REVERSE
           LENGTH=534
          Length = 534

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 149/347 (42%), Gaps = 48/347 (13%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           DA   + L++   + G +G A ++   + E       V +N ++ G  ++ + +++L L+
Sbjct: 151 DAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDL----VVFNAMISGYANNSQADEALNLV 206

Query: 193 DRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
             +   G+KP+V T++ L+ G    R  ++  ++L+ +   G +P++VS+  +++GL   
Sbjct: 207 KDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHN 266

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILL---RSLCYEGRWEEANGLLAEMDEEDLSPSV 309
            + E A + F+ +   G  P+  +   LL    +L Y    +E +G              
Sbjct: 267 FQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHG-------------- 312

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGF------------NVTATSYNPIIARLCKE 357
             Y++ +T L  HG    A  +LD   + GF              T  ++N +I      
Sbjct: 313 --YSV-VTGLEDHGFVRSA--LLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANH 367

Query: 358 GKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKV----QEAFFIFQSLGNKQNCPMH 413
           G  D  V+  DQM       +  T+ AI   C    +    Q  F + Q+    +  P  
Sbjct: 368 GLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQN--KYRIVPRL 425

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCR 460
           ++   ++ +L R G    A++M+  M      PD + + +L+   CR
Sbjct: 426 EHYACMVDLLGRAGKLVEAYEMIKAMR---MEPDLFVWGALLAA-CR 468



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 173/437 (39%), Gaps = 40/437 (9%)

Query: 125 IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK 184
           +V SGI         LV F    G +  A ++ +++ +       V    ++     +G 
Sbjct: 42  LVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVV----MIGACARNGY 97

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK--ERGVDEAMKLLDDIIARGGEPNLVSY 242
             +SL     + K GLK + F    LL+ +    +R   + +  L  ++    E +    
Sbjct: 98  YQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCL--VLKFSYESDAFIV 155

Query: 243 NVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDE 302
           + L+    K G   +A ++F DL  +     +V +N ++       + +EA  L+ +M  
Sbjct: 156 SSLIDMYSKFGEVGNARKVFSDLGEQ----DLVVFNAMISGYANNSQADEALNLVKDMKL 211

Query: 303 EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDL 362
             + P V+T+N LI+  S     E+  E+L+ M   G+     S+  II+ L    + + 
Sbjct: 212 LGIKPDVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEK 271

Query: 363 VVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISM 422
                 QM+     PN  T   +   C                 K    +H Y  +V++ 
Sbjct: 272 AFDAFKQMLTHGLYPNSATIITLLPACTTLAYM-----------KHGKEIHGY--SVVTG 318

Query: 423 LCRKGNTYPAFQMLYEMTKCGF----------TPD--SYTYSSLVRGMCREGMLDEALEI 470
           L   G    A   +Y   KCGF          TP   + T++S++      G+ D+A+E+
Sbjct: 319 LEDHGFVRSALLDMY--GKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVEL 376

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK-GCVPNEITYTILVEGLA 529
           F  +E      D   + A++        TDL   +F  M NK   VP    Y  +V+ L 
Sbjct: 377 FDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLG 436

Query: 530 FENELDIAAGLMKELYM 546
              +L  A  ++K + M
Sbjct: 437 RAGKLVEAYEMIKAMRM 453



 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 5/243 (2%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G KPDV     L+          K   ++E++   G  PD   +T +++ L        A
Sbjct: 213 GIKPDVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKA 272

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
               +++  HG    + T  TL+    +   +    ++       GL+ + F  S LL+ 
Sbjct: 273 FDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDM 332

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS 273
             K   + EAM L      +  +   V++N ++      G  + A+ELF  + A G    
Sbjct: 333 YGKCGFISEAMILFR----KTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLD 388

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVL 332
            +++  +L +  + G  +    L   M  +  + P +  Y  ++  L   G+  +A+E++
Sbjct: 389 HLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMI 448

Query: 333 DEM 335
             M
Sbjct: 449 KAM 451


>AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:7563503-7565074 FORWARD
           LENGTH=523
          Length = 523

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 181/416 (43%), Gaps = 27/416 (6%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G+  D    + L++   + G +  A ++ +++ E        T+N ++ G  S+G    +
Sbjct: 76  GVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERN----VATWNAMIGGYMSNGDAVLA 131

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
             L + ++   +  N  T+  +++G  K   +++A +L + +       N+ +++V+L  
Sbjct: 132 SGLFEEIS---VCRNTVTWIEMIKGYGKRIEIEKARELFERMPFE--LKNVKAWSVMLGV 186

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
                + EDA + F D+P K    +   +++++      G   EA  +   +   DL   
Sbjct: 187 YVNNRKMEDARKFFEDIPEK----NAFVWSLMMSGYFRIGDVHEARAIFYRVFARDL--- 239

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
            V +N LI   + +G ++ A +    M   G+   A + + I++   + G++D+  +   
Sbjct: 240 -VIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHS 298

Query: 369 QMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQ-NCPMHDYCKNVISMLCRK 426
            +  R    N+   NA I M  + G ++ A  +F+S+  +   C     C ++IS L   
Sbjct: 299 LINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVAC-----CNSMISCLAIH 353

Query: 427 GNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNY 486
           G    A +M   M      PD  T+ +++      G L E L+IF  ++  D  P++ ++
Sbjct: 354 GKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHF 413

Query: 487 NALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMK 542
             LI    +  +   +  + + M  K   PN+     L+       + ++A  +MK
Sbjct: 414 GCLIHLLGRSGKLKEAYRLVKEMHVK---PNDTVLGALLGACKVHMDTEMAEQVMK 466



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 158/363 (43%), Gaps = 38/363 (10%)

Query: 116 RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTL 175
           R  V  +EMI G G                +R  I  A +L E++    F+   V   ++
Sbjct: 142 RNTVTWIEMIKGYG----------------KRIEIEKARELFERMP---FELKNVKAWSV 182

Query: 176 VKGL-CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARG 234
           + G+  ++ K+  + +  + + +K    N F +S ++ G ++   V EA  +   + AR 
Sbjct: 183 MLGVYVNNRKMEDARKFFEDIPEK----NAFVWSLMMSGYFRIGDVHEARAIFYRVFAR- 237

Query: 235 GEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEAN 294
              +LV +N L+ G  + G ++DAI+ F ++  +G+ P  V+ + +L +    GR +   
Sbjct: 238 ---DLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGR 294

Query: 295 GLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARL 354
            + + ++   +  +    N LI   +  G  E A  V + ++      +    N +I+ L
Sbjct: 295 EVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVR----SVACCNSMISCL 350

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK-VQEAFFIFQSLGNKQNCPMH 413
              GK    ++    M      P+E T+ A+   C  G  + E   IF  +  +   P  
Sbjct: 351 AIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNV 410

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE-ALEIFR 472
            +   +I +L R G    A++++ EM      P+     +L+ G C+  M  E A ++ +
Sbjct: 411 KHFGCLIHLLGRSGKLKEAYRLVKEMH---VKPNDTVLGALL-GACKVHMDTEMAEQVMK 466

Query: 473 ILE 475
           I+E
Sbjct: 467 IIE 469



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           DAF +++   G+G +PD    + +L    +S +      V  +I   GI  +      L+
Sbjct: 260 DAFFNMQ---GEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALI 316

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
           +   + G++  A  + E +            N+++  L  HGK  ++L++   +    LK
Sbjct: 317 DMYAKCGDLENATSVFESIS----VRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLK 372

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIEL 261
           P+  T+  +L        + E +K+  ++  +  +PN+  +  L+  L + G+ ++A  L
Sbjct: 373 PDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRL 432

Query: 262 FRDLPAK 268
            +++  K
Sbjct: 433 VKEMHVK 439


>AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:172256-174137 FORWARD
           LENGTH=577
          Length = 577

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 40/388 (10%)

Query: 164 GFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEA 223
           GF+    TY T++      G++     +   + +KG+  +  TY+ L+        VD A
Sbjct: 117 GFKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGA 176

Query: 224 MKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           M+L +++   G EP +VSY   +  L  +GR E+A E+++++     SP+  +Y +L+  
Sbjct: 177 MRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEY 236

Query: 284 LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVT 343
           L   G+ EEA  +  +M E  + P     NILI      G T     VL  M  +G  + 
Sbjct: 237 LVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVVLR 296

Query: 344 ATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQS 403
              +   +  L   G+ D +++ ++  I            ++  LC    + E       
Sbjct: 297 YPIFVEALETLKAAGESDDLLREVNSHI------------SVESLC-SSDIDET-----P 338

Query: 404 LGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMC---- 459
                +    D  + + S+L  K N      +L +M       DS+  S+++   C    
Sbjct: 339 TAEVNDTKNSDDSRVISSVLLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCR 398

Query: 460 REG---MLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK---- 512
            EG     D +LE+   L+++ Y+       ALI  F +       IE+ + MV      
Sbjct: 399 TEGASLAFDYSLEMGIHLKKSAYL-------ALIGNFLRSNELPKVIEVVKEMVKAQHSL 451

Query: 513 GCVPNEITYTILVEGLAFENELDIAAGL 540
           GC        +L+  L F     +AA +
Sbjct: 452 GCYQG----AMLIHRLGFGRRPRLAADV 475



 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/438 (21%), Positives = 182/438 (41%), Gaps = 31/438 (7%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G   D   YT +++     G I     +   ++E G    TVTY +L+  + S G ++ +
Sbjct: 117 GFKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGA 176

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           ++L + +   G +P V +Y+  ++  + +  V+EA ++  +++     PN  +Y VL+  
Sbjct: 177 MRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEY 236

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
           L   G+ E+A+++F  +   G  P   + NIL+      G       +L  M E  +   
Sbjct: 237 LVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGV--- 293

Query: 309 VVTYNILITSLSLHGRTEQAFEVL-----------------DEMTRSGFNVTATSYNPII 351
           V+ Y I + +L       ++ ++L                 DE   +  N T  S +  +
Sbjct: 294 VLRYPIFVEALETLKAAGESDDLLREVNSHISVESLCSSDIDETPTAEVNDTKNSDDSRV 353

Query: 352 ARLCKEGKVDLVVQ--CLDQMICRRYSPNEGTYNAIAML-CEQGKVQEAFFIFQ-SLGNK 407
                  K +LV     L+QM  R    +    +AI    C++ + + A   F  SL   
Sbjct: 354 ISSVLLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCRTEGASLAFDYSLEMG 413

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR--GMCREGMLD 465
            +     Y   +I    R        +++ EM K   +   Y  + L+   G  R   L 
Sbjct: 414 IHLKKSAYLA-LIGNFLRSNELPKVIEVVKEMVKAQHSLGCYQGAMLIHRLGFGRRPRL- 471

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            A ++F +L ++     +  Y AL+  +      + +++I + M  +  +P+  TY +L+
Sbjct: 472 -AADVFDLLPDDQ--KGVAAYTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLL 528

Query: 526 EGLAFENELDIAAGLMKE 543
            GL   ++      L+++
Sbjct: 529 SGLEKTSDFQKEVALLRK 546


>AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167),
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: Pentatricopeptide
           repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has
           26268 Blast hits to 8959 proteins in 289 species: Archae
           - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants -
           25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI
           BLink). | chr4:573098-577243 REVERSE LENGTH=1110
          Length = 1110

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKP 202
            +  RG +  A +L +    HG    T +YN L++  C +  L+ + QL  ++ ++ + P
Sbjct: 164 LVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVP 223

Query: 203 NVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
           +V +Y  L++G  ++  V+ AM+LLDD++ +G  P+      L+ GLC +G  ++  +  
Sbjct: 224 DVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPD----RTLIGGLCDQGMFDEGKKYL 279

Query: 263 RDLPAKGFSPSVVSYNILLRSLCYEGRWEEA 293
            ++ +KGFSP     N L++  C  G+ EEA
Sbjct: 280 EEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 310



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 5/197 (2%)

Query: 253 GRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTY 312
           G  + A ELF+     G  P+  SYN+L+++ C       A  L  +M E D+ P V +Y
Sbjct: 169 GYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSY 228

Query: 313 NILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMIC 372
            ILI      G+   A E+LD+M   GF    T    +I  LC +G  D   + L++MI 
Sbjct: 229 KILIQGFCRKGQVNGAMELLDDMLNKGFVPDRT----LIGGLCDQGMFDEGKKYLEEMIS 284

Query: 373 RRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYP 431
           + +SP+    N +    C  GKV+EA  + + +         D  + VI ++C +  +  
Sbjct: 285 KGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEK 344

Query: 432 AFQMLYEMTKCGFTPDS 448
               L +  K   T D+
Sbjct: 345 IKLFLEDAVKEEITGDT 361



 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           G++P+   Y  L+   C   ++  A QL  K+ E        +Y  L++G C  G++N +
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGA 244

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
           ++LLD +  KG  P+      L+ G   +   DE  K L+++I++G  P+    N L+ G
Sbjct: 245 MELLDDMLNKGFVPD----RTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKG 300

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLS 306
            C  G+ E+A ++   +   G +    ++ +++  +C E   E+    L +  +E+++
Sbjct: 301 FCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEIT 358



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 377 PNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQM 435
           PN  +YN +    C    +  A+ +F  +  +   P  D  K +I   CRKG    A ++
Sbjct: 188 PNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMEL 247

Query: 436 LYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCK 495
           L +M   GF PD     +L+ G+C +GM DE  +    +    + P     N L+ GFC 
Sbjct: 248 LDDMLNKGFVPDR----TLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCS 303

Query: 496 YQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENE 533
           + + + + ++ + ++  G   +  T+ +++  +  E+E
Sbjct: 304 FGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDE 341



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G  P+      L+   C ++    A ++   ++   ++PD   Y  L+   CR+G +  A
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGA 244

Query: 154 MQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEG 213
           M+L++ +   GF    V   TL+ GLC  G  ++  + L+ +  KG  P+    + L++G
Sbjct: 245 MELLDDMLNKGF----VPDRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKG 300

Query: 214 AYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELF 262
                 V+EA  +++ ++  G   +  ++ +++  +C E  +E  I+LF
Sbjct: 301 FCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESE-KIKLF 348



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 411 PMHDYCKNVISMLC-RKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
           P   +   ++ +L   +G    AF++       G  P++ +Y+ L++  C    L  A +
Sbjct: 152 PQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQ 211

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +F  + E D +PD+D+Y  LI GFC+  + + ++E+   M+NKG VP+      L+ GL 
Sbjct: 212 LFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDR----TLIGGLC 267

Query: 530 FENELDIAAGLMKEL 544
            +   D     ++E+
Sbjct: 268 DQGMFDEGKKYLEEM 282



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M+ +   PDV     L+   C+  +   A+ +++ ++  G +PD      L+  LC +G 
Sbjct: 216 MLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRT----LIGGLCDQGM 271

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
                + +E++   GF       N LVKG CS GK+ ++  +++ + K G
Sbjct: 272 FDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNG 321


>AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7009570-7011852 FORWARD
           LENGTH=760
          Length = 760

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/507 (21%), Positives = 207/507 (40%), Gaps = 63/507 (12%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
            NDA L L+ +      P +   + L+Y L K+    +++ V   +   G+IPD+    +
Sbjct: 66  FNDADLVLQSI----PDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPN 121

Query: 140 LVNFLCRRG--NIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           L           +G  +  V  V   G         ++       G++  + ++ DR++ 
Sbjct: 122 LFKVCAELSAFKVGKQIHCVSCVS--GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSD 179

Query: 198 KGLKPNVFTYSFLLEGAYKERG-VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTE 256
           K    +V T S LL  AY  +G ++E +++L ++ + G E N+VS+N +L+G  + G  +
Sbjct: 180 K----DVVTCSALL-CAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHK 234

Query: 257 DAIELFRDLPAKGFSPSVVSYNILLRSL-------------------------CY----- 286
           +A+ +F+ +   GF P  V+ + +L S+                         C      
Sbjct: 235 EAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294

Query: 287 --EGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTA 344
              G+     G+++  ++ ++  + V  N  IT LS +G  ++A E+ +        +  
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNV 353

Query: 345 TSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC------EQGKVQEAF 398
            S+  IIA   + GK    ++   +M      PN  T  ++   C        G+    F
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413

Query: 399 FIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGM 458
            +   L +  +         +I M  + G    + Q+++ M     T +   ++SL+ G 
Sbjct: 414 AVRVHLLDNVHVG-----SALIDMYAKCGRINLS-QIVFNMMP---TKNLVCWNSLMNGF 464

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK-GCVPN 517
              G   E + IF  L      PD  ++ +L+    +   TD   + F+ M  + G  P 
Sbjct: 465 SMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPR 524

Query: 518 EITYTILVEGLAFENELDIAAGLMKEL 544
              Y+ +V  L    +L  A  L+KE+
Sbjct: 525 LEHYSCMVNLLGRAGKLQEAYDLIKEM 551



 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDD 229
           V +N+L+ G   HGK  + + + + L +  LKP+  +++ LL    +    DE  K    
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 230 IIARGG-EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRS 283
           +    G +P L  Y+ ++  L + G+ ++A +L +++P   F P    +  LL S
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP---FEPDSCVWGALLNS 566


>AT5G02830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:644458-648421 REVERSE
           LENGTH=852
          Length = 852

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 163/401 (40%), Gaps = 77/401 (19%)

Query: 88  EYMVGKGQKPDVAQATQLL----YDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNF 143
           E ++ +  KP++     L+    +DL  + K  K +++++      +  D   Y  L+  
Sbjct: 291 EDLLKENIKPNIYVINSLMNVNSHDLGYTLKVYKNMQILD------VTADMTSYNILLKT 344

Query: 144 LCRRGNIGYAMQL---VEKVEEHGF-QTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
            C  G +  A  +    +++E  G  +    TY T++K          +L++ D +   G
Sbjct: 345 CCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVG 404

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAI 259
           + PN  T+S L+        V++A  L ++++A G EPN   +N+LL    +  + + A 
Sbjct: 405 VTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAF 464

Query: 260 ELFR--------------DLPAKG---------------------------------FSP 272
            LF+              D+ +KG                                 F P
Sbjct: 465 RLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASKRFCFKP 524

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +  +YNILL++   +  +     L+ EM    LSP+ +T++ LI      G  E A  +L
Sbjct: 525 TTATYNILLKACGTD--YYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRIL 582

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGK-VDLVVQCLDQMICRRYS--PNEGTYNAIAMLC 389
             M  +G      +Y   I ++C E K + L     ++M  RRY   PN  TYN   +L 
Sbjct: 583 RTMHSAGTRPDVVAYTTAI-KICAENKCLKLAFSLFEEM--RRYQIKPNWVTYN--TLLK 637

Query: 390 EQGK------VQEAFFIFQSLGNKQNCPMHDYCKNVISMLC 424
            + K      V++   I+Q + N    P   + K +I   C
Sbjct: 638 ARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWC 678



 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 166/420 (39%), Gaps = 39/420 (9%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           K+  + E ++   I P+      L+N      ++GY +++ + ++         +YN L+
Sbjct: 285 KSRYIYEDLLKENIKPNIYVINSLMNV--NSHDLGYTLKVYKNMQILDVTADMTSYNILL 342

Query: 177 KGLCSHGKLNQSLQL---LDRLTKKGL-KPNVFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
           K  C  G+++ +  +     R+   GL K + FTY  +++     +    A+K+ DD+ +
Sbjct: 343 KTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKS 402

Query: 233 RGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEE 292
            G  PN  +++ L++     G  E A  LF ++ A G  P+   +NILL +     +++ 
Sbjct: 403 VGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDR 462

Query: 293 ANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS-YNPII 351
           A  L        ++ S+   +I+       GRT     + +    S  N  + S Y    
Sbjct: 463 AFRLFQSWKGSSVNESLYADDIVS-----KGRTSSPNILKNNGPGSLVNRNSNSPYIQAS 517

Query: 352 ARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC--EQGKVQEAFFIFQSLGNKQN 409
            R C                   + P   TYN +   C  +  + +E     +SLG    
Sbjct: 518 KRFC-------------------FKPTTATYNILLKACGTDYYRGKELMDEMKSLGLS-- 556

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
            P       +I M    G+   A ++L  M   G  PD   Y++ ++       L  A  
Sbjct: 557 -PNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFS 615

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQ---RTDLSIEIFQRMVNKGCVPNEITYTILVE 526
           +F  +      P+   YN L+    KY         + I+Q M N G  PN+     L+E
Sbjct: 616 LFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIE 675



 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 160/378 (42%), Gaps = 41/378 (10%)

Query: 176 VKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERG----VDEAMKLLDDII 231
           V GLC  G   +S  + + L K+ +KPN++  + L+     + G    V + M++LD   
Sbjct: 276 VCGLC--GDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLKVYKNMQILD--- 330

Query: 232 ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPS------VVSYNILLRSLC 285
                 ++ SYN+LL   C  GR + A +++++  AK    S        +Y  +++   
Sbjct: 331 ---VTADMTSYNILLKTCCLAGRVDLAQDIYKE--AKRMESSGLLKLDAFTYCTIIKVFA 385

Query: 286 YEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTAT 345
               W+ A  +  +M    ++P+  T++ LI++ +  G  EQA  + +EM  SG    + 
Sbjct: 386 DAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQ 445

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQ--- 402
            +N ++    +  + D   +       +  S NE  Y     +  +G+      +     
Sbjct: 446 CFNILLHACVEACQYDRAFRLFQSW--KGSSVNESLY--ADDIVSKGRTSSPNILKNNGP 501

Query: 403 -SLGNK-QNCPMHDYCK-----------NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
            SL N+  N P     K           N++   C   + Y   +++ EM   G +P+  
Sbjct: 502 GSLVNRNSNSPYIQASKRFCFKPTTATYNILLKAC-GTDYYRGKELMDEMKSLGLSPNQI 560

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRM 509
           T+S+L+      G ++ A+ I R +      PD+  Y   I    + +   L+  +F+ M
Sbjct: 561 TWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEM 620

Query: 510 VNKGCVPNEITYTILVEG 527
                 PN +TY  L++ 
Sbjct: 621 RRYQIKPNWVTYNTLLKA 638



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 24/299 (8%)

Query: 90  MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN 149
           M   G  P+    + L+     +    +A  + E ++ SG  P++ C+  L++       
Sbjct: 400 MKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQ 459

Query: 150 IGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKL---NQSLQLLDRLTKKG------- 199
              A +L +  +           + + KG  S   +   N    L++R +          
Sbjct: 460 YDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASKR 519

Query: 200 --LKPNVFTYSFLLEGAYKERGVD--EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRT 255
              KP   TY+ LL+      G D     +L+D++ + G  PN ++++ L+      G  
Sbjct: 520 FCFKPTTATYNILLKAC----GTDYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDV 575

Query: 256 EDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR-WEEANGLLAEMDEEDLSPSVVTYNI 314
           E A+ + R + + G  P VV+Y   ++ +C E +  + A  L  EM    + P+ VTYN 
Sbjct: 576 EGAVRILRTMHSAGTRPDVVAYTTAIK-ICAENKCLKLAFSLFEEMRRYQIKPNWVTYNT 634

Query: 315 LITSLSLHG---RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           L+ + S +G      Q   +  +M  +G+         +I   C EG +    Q  D++
Sbjct: 635 LLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWC-EGVIQENGQSQDKI 692


>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr1:1721523-1723025
           FORWARD LENGTH=500
          Length = 500

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 183/416 (43%), Gaps = 31/416 (7%)

Query: 159 KVEEHGFQTG--TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYK 216
           K++ H   T   TV++ + +  L  +G+L ++ +    +T  G++PN  T+  LL G   
Sbjct: 24  KIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD 83

Query: 217 ERGVDEAM-KLLDDIIARGG-EPNLVSYNVLLTGL-CKEGRTEDAIELFRDLPAKGFSPS 273
                EA+  LL     + G + N V     + G+  K GR + A  +F  +  K    +
Sbjct: 84  FTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDK----N 139

Query: 274 VVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLD 333
            V++N ++      G+ + A  +  +M E DL    +++  +I      G  E+A     
Sbjct: 140 SVTWNTMIDGYMRSGQVDNAAKMFDKMPERDL----ISWTAMINGFVKKGYQEEALLWFR 195

Query: 334 EMTRSGFNVTATSYNPIIARL--CKE-GKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLC 389
           EM  SG       Y  IIA L  C   G +   +     ++ + +  N    N+ I + C
Sbjct: 196 EMQISG---VKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYC 252

Query: 390 EQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSY 449
             G V+ A  +F ++  +     +    +VI      GN + +     +M + GF PD+ 
Sbjct: 253 RCGCVEFARQVFYNMEKRTVVSWN----SVIVGFAANGNAHESLVYFRKMQEKGFKPDAV 308

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEENDYM--PDIDNYNALILGFCKYQRTDLSIEIFQ 507
           T++  +      G+++E L  F+I+ + DY   P I++Y  L+  + +  R + ++++ Q
Sbjct: 309 TFTGALTACSHVGLVEEGLRYFQIM-KCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQ 367

Query: 508 RMVNKGCVPNEITYTILVEGLA-FENELDIAAGLMKELYMREVLSRSTVDRLSMQY 562
            M  K   PNE+    L+   +   N + +A  LMK L    V S S    LS  Y
Sbjct: 368 SMPMK---PNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMY 420



 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 40/237 (16%)

Query: 133 DAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLL 192
           ++  +  +++   R G +  A ++ +K+ E       +++  ++ G    G   ++L   
Sbjct: 139 NSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDL----ISWTAMINGFVKKGYQEEALLWF 194

Query: 193 DRLTKKGLKPN--------------------VFTYSFLLEGAYKERGVDEAMKLLDDIIA 232
             +   G+KP+                    ++ + ++L   +K   V  +  L+D +  
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNN-VRVSNSLID-LYC 252

Query: 233 RGG-------------EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNI 279
           R G             +  +VS+N ++ G    G   +++  FR +  KGF P  V++  
Sbjct: 253 RCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTG 312

Query: 280 LLRSLCYEGRWEEANGLLAEMD-EEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            L +  + G  EE       M  +  +SP +  Y  L+   S  GR E A +++  M
Sbjct: 313 ALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369


>AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8672774-8674881 FORWARD
           LENGTH=665
          Length = 665

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 155/389 (39%), Gaps = 48/389 (12%)

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
           L+N   + G++  A ++ EK+ +  F    VT+ TL+ G   H +   +L   +++ + G
Sbjct: 101 LLNMYAKCGSLEEARKVFEKMPQRDF----VTWTTLISGYSQHDRPCDALLFFNQMLRFG 156

Query: 200 LKPNVFTYSFLLEGAYKER---------------GVDEAMKL---LDDIIARGG------ 235
             PN FT S +++ A  ER               G D  + +   L D+  R G      
Sbjct: 157 YSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQ 216

Query: 236 -------EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
                    N VS+N L+ G  +   TE A+ELF+ +   GF PS  SY  L  +    G
Sbjct: 217 LVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTG 276

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
             E+   + A M +          N L+   +  G    A ++ D + +        S+N
Sbjct: 277 FLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR----DVVSWN 332

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNK 407
            ++    + G     V   ++M      PNE ++ ++   C   G + E +  ++ +   
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDE- 466
              P   +   V+ +L R G+   A + + EM      P +  + +L+   CR     E 
Sbjct: 393 GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP---IEPTAAIWKALLNA-CRMHKNTEL 448

Query: 467 ---ALEIFRILEENDYMPDIDNYNALILG 492
              A E    L+ +D  P +  YN    G
Sbjct: 449 GAYAAEHVFELDPDDPGPHVILYNIYASG 477



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 52/253 (20%)

Query: 277 YNILLRS-----LCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEV 331
           YN LL+      L  +GR   A+ +L  +   D    +V  N L+   +  G  E+A +V
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAH-ILQSIFRHD----IVMGNTLLNMYAKCGSLEEARKV 117

Query: 332 LDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ 391
            ++M +  F     ++  +I+   +  +    +   +QM+   YSPNE T +++      
Sbjct: 118 FEKMPQRDF----VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSV------ 167

Query: 392 GKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY 451
                   I  +   ++ C     C + +   C                KCGF  + +  
Sbjct: 168 --------IKAAAAERRGC-----CGHQLHGFC---------------VKCGFDSNVHVG 199

Query: 452 SSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVN 511
           S+L+    R G++D+A  +F  LE  +   D+ ++NALI G  +   T+ ++E+FQ M+ 
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRN---DV-SWNALIAGHARRSGTEKALELFQGMLR 255

Query: 512 KGCVPNEITYTIL 524
            G  P+  +Y  L
Sbjct: 256 DGFRPSHFSYASL 268


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 178/411 (43%), Gaps = 35/411 (8%)

Query: 144 LCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPN 203
           LC + ++  AM+ ++ ++ HG    + TY+ L+K   S+  +++   +   L   G +P 
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           +F  + L+    K   +++A +L D +  R    N++S+  +++   K    + A+EL  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQR----NVISWTTMISAYSKCKIHQKALELLV 151

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
            +      P+V +Y+ +LRS        +   L   + +E L   V   + LI   +  G
Sbjct: 152 LMLRDNVRPNVYTYSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLG 208

Query: 324 RTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYN 383
             E A  V DEM        A  +N II    +  + D+ ++   +M    +   + T  
Sbjct: 209 EPEDALSVFDEMVTG----DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264

Query: 384 AIAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI------SMLCRKGNTYPAFQMLY 437
           ++   C    + E       LG + +  +  Y +++I       M C+ G+   A ++  
Sbjct: 265 SVLRACTGLALLE-------LGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFN 317

Query: 438 EMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNAL--ILGFCK 495
           +M +     D  T+S+++ G+ + G   EAL++F  ++ +   P   NY  +  +L  C 
Sbjct: 318 QMKE----RDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKP---NYITIVGVLFACS 370

Query: 496 YQRTDLSIEIFQRMVNK--GCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           +         + R + K  G  P    Y  +++ L    +LD A  L+ E+
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEM 421



 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/431 (18%), Positives = 179/431 (41%), Gaps = 22/431 (5%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           LC      +A++ M+ +   G+  D+A Y+ L+        +     +   +  +G +  
Sbjct: 36  LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
               N L+        LN + QL D++ ++    NV +++ ++    K +   +A++LL 
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQR----NVISWTTMISAYSKCKIHQKALELLV 151

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            ++     PN+ +Y+ +L          D   L   +  +G    V   + L+      G
Sbjct: 152 LMLRDNVRPNVYTYSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLG 208

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYN 348
             E+A  +  EM    ++   + +N +I   + + R++ A E+   M R+GF     +  
Sbjct: 209 EPEDALSVFDEM----VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264

Query: 349 PIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNK 407
            ++        ++L +Q    ++  +Y  +    NA+  M C+ G +++A  +F  +  +
Sbjct: 265 SVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322

Query: 408 QNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEA 467
                      +IS L + G +  A ++   M   G  P+  T   ++      G+L++ 
Sbjct: 323 DVITW----STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 468 LEIFRILEE-NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVE 526
              FR +++     P  ++Y  +I    K  + D ++++   M    C P+ +T+  L+ 
Sbjct: 379 WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEM---ECEPDAVTWRTLLG 435

Query: 527 GLAFENELDIA 537
               +  + +A
Sbjct: 436 ACRVQRNMVLA 446


>AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9158380-9159897 FORWARD
           LENGTH=505
          Length = 505

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 38/297 (12%)

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           I + G  N  ++ ++L  L      +  +  F  +   G+  +V + N  + +LC E   
Sbjct: 138 IGKRGLVNDKTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLV 197

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           EEA  +  ++ +E + P  +TY  +I      G   +A ++ + M   GF+V   +   I
Sbjct: 198 EEAKFVFIKL-KEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKI 256

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQNC 410
           +  L K+ + D   +    M+ +R    +G +  +                         
Sbjct: 257 METLLKKNQFDEASKVFYVMVSKRGGDLDGGFYRV------------------------- 291

Query: 411 PMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEI 470
                   +I  LC+ G    A ++  EM + G   D+ T++SL+ G+  +  + EA  +
Sbjct: 292 --------MIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGL 343

Query: 471 FRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
              +E     PDI  Y+ LI G  K +R   + E+F++M+ +GC P   TY +L++G
Sbjct: 344 VEGVEN----PDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQG 396



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 122/259 (47%), Gaps = 6/259 (2%)

Query: 82  DAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLV 141
           D F  L   +GK    +      +L  L  + + +K V    ++ G G + +       V
Sbjct: 129 DLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGV 188

Query: 142 NFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLK 201
             LC+   +  A  +  K++E   +   +TY T+++G C  G L ++ +L + +  +G  
Sbjct: 189 ETLCKEKLVEEAKFVFIKLKEF-IKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFD 247

Query: 202 PNVFTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVSYNVLLTGLCKEGRTEDAIE 260
            ++     ++E   K+   DEA K+   +++ RGG+ +   Y V++  LCK GR + A +
Sbjct: 248 VDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGGFYRVMIDWLCKNGRIDMARK 307

Query: 261 LFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS 320
           +F ++  +G     +++  L+  L  + R  EA GL+  ++  D+S     Y+ LI  L 
Sbjct: 308 VFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGVENPDIS----IYHGLIKGLV 363

Query: 321 LHGRTEQAFEVLDEMTRSG 339
              R  +A EV  +M + G
Sbjct: 364 KIKRASEATEVFRKMIQRG 382


>AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2761195-2764281 REVERSE
           LENGTH=1028
          Length = 1028

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 188/450 (41%), Gaps = 52/450 (11%)

Query: 117 KAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLV 176
           KAV    +I+G  I  +      +V+   +   + YA +  + +E+         +N+++
Sbjct: 80  KAVHSKSLILG--IDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEKD-----VTAWNSML 132

Query: 177 KGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGE 236
               S GK  + L+    L +  + PN FT+S +L    +E  V+   ++   +I  G E
Sbjct: 133 SMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLE 192

Query: 237 -------------------------------PNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
                                          PN V +  L +G  K G  E+A+ +F  +
Sbjct: 193 RNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERM 252

Query: 266 PAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRT 325
             +G  P  +++  ++ +    G+ ++A  L  EM     SP VV +N++I+     G  
Sbjct: 253 RDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS----SPDVVAWNVMISGHGKRGCE 308

Query: 326 EQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA- 384
             A E    M +S    T ++   +++ +     +DL +    + I    + N    ++ 
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 385 IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGF 444
           ++M  +  K++ A  +F++L  K +     +   +I      G ++   ++  +M   G+
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDV----FWNAMIRGYAHNGESHKVMELFMDMKSSGY 424

Query: 445 TPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIE 504
             D +T++SL+        L+   +   I+ +     ++   NAL+  + K    + + +
Sbjct: 425 NIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQ 484

Query: 505 IFQRMVNKGCVPNEITY-TILVEGLAFENE 533
           IF+RM    C  + +T+ TI+   +  ENE
Sbjct: 485 IFERM----CDRDNVTWNTIIGSYVQDENE 510



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/454 (18%), Positives = 192/454 (42%), Gaps = 59/454 (12%)

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           K ++   A RV E IV     P+  C+T L +   + G    A+ + E++ + G +   +
Sbjct: 207 KCDRISDARRVFEWIVD----PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHL 262

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE-AMKLLDD 229
            + T++      GKL  +  L   ++     P+V  ++ ++ G + +RG +  A++   +
Sbjct: 263 AFVTVINTYIRLGKLKDARLLFGEMSS----PDVVAWNVMISG-HGKRGCETVAIEYFFN 317

Query: 230 IIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGR 289
           +     +    +   +L+ +      +  + +  +    G + ++   + L+       +
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
            E A  +   ++E++     V +N +I   + +G + +  E+  +M  SG+N+   ++  
Sbjct: 378 MEAAAKVFEALEEKN----DVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTS 433

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLGNKQ 408
           +++       +++  Q    +I ++ + N    NA+  M  + G +++A  IF+ + ++ 
Sbjct: 434 LLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRD 493

Query: 409 NCPMHDYCKNVISMLCRKGNTYPAFQMLYEM----------------------------- 439
           N   +     +I    +  N   AF +   M                             
Sbjct: 494 NVTWN----TIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549

Query: 440 ------TKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGF 493
                  KCG   D +T SSL+    + G++ +A ++F  L E      + + NALI G+
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE----WSVVSMNALIAGY 605

Query: 494 CKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEG 527
            +    + ++ +FQ M+ +G  P+EIT+  +VE 
Sbjct: 606 SQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEA 638



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 136/324 (41%), Gaps = 27/324 (8%)

Query: 147 RGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFT 206
           + N+  A+ L +++   G     +T+ T+V+       L    Q   ++TK+G       
Sbjct: 607 QNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEY 666

Query: 207 YSFLLEGAY-KERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDL 265
               L G Y   RG+ EA  L  ++       ++V +  +++G  + G  E+A++ ++++
Sbjct: 667 LGISLLGMYMNSRGMTEACALFSEL---SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM 723

Query: 266 PAKGFSPSVVSYNILLR-----SLCYEGRWEEA--NGLLAEMDEEDLSPSVVTYNILITS 318
              G  P   ++  +LR     S   EGR   +    L  ++DE       +T N LI  
Sbjct: 724 RHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDE-------LTSNTLIDM 776

Query: 319 LSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPN 378
            +  G  + + +V DEM R        S+N +I    K G  +  ++  D M      P+
Sbjct: 777 YAKCGDMKGSSQVFDEMRRRS---NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPD 833

Query: 379 EGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNCPMH-DYCKNVISMLCRKGNTYPAFQML 436
           E T+  +   C   GKV +   IF+ +  +       D+   ++ +L R G    A   +
Sbjct: 834 EITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFI 893

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCR 460
                    PD+  +SSL+ G CR
Sbjct: 894 EAQN---LKPDARLWSSLL-GACR 913


>AT2G27800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:11849789-11851351 REVERSE
           LENGTH=442
          Length = 442

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 171 TYNTLVKGLCSHGK--------LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDE 222
           TY+ L K L   G         +     L  ++   G++P+VF  + L++G      V++
Sbjct: 247 TYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVND 306

Query: 223 AMKLLDDI-IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
           A+++   + +    EPN  +Y+ L+ GLC +GRT +A EL  ++  KGF P+  SYN L+
Sbjct: 307 ALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLV 366

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
            +    G  ++A   L EM E       ++Y  L+      G+ ++A  +L EM R    
Sbjct: 367 NAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLL-EMLREKQL 425

Query: 342 VTATSYNPIIARLCKE 357
           V   SY+ ++  L K+
Sbjct: 426 VDRDSYDKLVNVLHKD 441



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 14/212 (6%)

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRL-TKKGL--KPNVFTYSFLLEGAYKERG--------- 219
           YN+++      GKL +++ +   + T K L  +P + TY  L + A   RG         
Sbjct: 210 YNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFK-ALLGRGNNSYINHVY 268

Query: 220 VDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPA-KGFSPSVVSYN 278
           ++    L   ++  G EP++ + N L+ G        DA+ +F  +       P+  +Y+
Sbjct: 269 METVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYD 328

Query: 279 ILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS 338
            L+  LC +GR   A  LL+EM  +   P+  +YN L+ + +L G  + A + L EM  +
Sbjct: 329 YLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIEN 388

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
           G  V   SY  ++   C++GK D   + L+ +
Sbjct: 389 GRVVDFISYRTLVDESCRKGKYDEATRLLEML 420



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 21/216 (9%)

Query: 346 SYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSL 404
           SY+  I +L        +   ++Q++  R+  NE  YN+I     + GK+  A  IF+ +
Sbjct: 174 SYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHM 233

Query: 405 GNKQNCPMHDYCKNVI--------SMLCRKGNTY-------PAFQMLYEMTKCGFTPDSY 449
              +N      C+  I        ++L R  N+Y           +  +M   G  PD +
Sbjct: 234 VTSKNLE----CRPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVF 289

Query: 450 TYSSLVRGMCREGMLDEALEIFRILEE-NDYMPDIDNYNALILGFCKYQRTDLSIEIFQR 508
             + LV+G      +++AL IF  +    D  P+   Y+ LI G C   RT  + E+   
Sbjct: 290 ALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSE 349

Query: 509 MVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
           M  KG VPN  +Y  LV   A   E+D A   + E+
Sbjct: 350 MKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEM 385



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 236 EPNLVSYNVLLTGLCKEGRT--------EDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
            P + +Y++L   L   G          E    LFR +   G  P V + N L++     
Sbjct: 242 RPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLS 301

Query: 288 GRWEEANGLLAEMDE-EDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATS 346
               +A  +  +M    D  P+  TY+ LI  L   GRT  A E+L EM   GF     S
Sbjct: 302 LHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKS 361

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA-MLCEQGKVQEAFFIFQSLG 405
           YN ++      G++D  V+CL +MI      +  +Y  +    C +GK  EA  + + L 
Sbjct: 362 YNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLLEMLR 421

Query: 406 NKQ 408
            KQ
Sbjct: 422 EKQ 424



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 121 VMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEE-HGFQTGTVTYNTLVKGL 179
           +   +V SGI PD      LV       ++  A+++  ++   +  +  + TY+ L+ GL
Sbjct: 275 LFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 334

Query: 180 CSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           C+ G+   + +LL  +  KG  PN  +Y+ L+        +D+A+K L ++I  G   + 
Sbjct: 335 CAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDF 394

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
           +SY  L+   C++G+ ++A  L   L  K
Sbjct: 395 ISYRTLVDESCRKGKYDEATRLLEMLREK 423



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 14/272 (5%)

Query: 270 FSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAF 329
           F+    SY+I +R L     ++E + ++ ++       +   YN +I   +  G+  +A 
Sbjct: 168 FTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIFYFTKAGKLIRAV 227

Query: 330 EVLDEMTRSG---FNVTATSYNPIIARLCKEGK--------VDLVVQCLDQMICRRYSPN 378
            +   M  S       T  +Y+ +   L   G         ++ V     QM+     P+
Sbjct: 228 NIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPD 287

Query: 379 EGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKN-VISMLCRKGNTYPAFQML 436
               N +         V +A  IF  +    +C  + +  + +I  LC +G T  A ++L
Sbjct: 288 VFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELL 347

Query: 437 YEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKY 496
            EM   GF P+  +Y+SLV      G +D+A++    + EN  + D  +Y  L+   C+ 
Sbjct: 348 SEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRK 407

Query: 497 QRTDLSIEIFQRMVNKGCVPNEITYTILVEGL 528
            + D +  + + +  K  V  + +Y  LV  L
Sbjct: 408 GKYDEATRLLEMLREKQLVDRD-SYDKLVNVL 438



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 78  VRLNDAFLHLEYM-VGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAAC 136
           + +NDA      M V    +P+      L++ LC   +   A  ++  + G G +P+   
Sbjct: 302 LHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKS 361

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           Y  LVN     G I  A++ + ++ E+G     ++Y TLV   C  GK +++ +LL+ L 
Sbjct: 362 YNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLLEMLR 421

Query: 197 KKGL 200
           +K L
Sbjct: 422 EKQL 425


>AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:771641-773482 REVERSE
           LENGTH=613
          Length = 613

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 177/416 (42%), Gaps = 44/416 (10%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           T+  L+K     G + Q   L  ++ K G   +VFT + L+    K + V +A+K+LD++
Sbjct: 33  TFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEM 92

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
             RG    + S N  ++GL + G   DA  +F D    G   + V+   +L      G  
Sbjct: 93  PERG----IASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDI 145

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           E    L     +      V     L++  S  G    A  + +++       +  +YN  
Sbjct: 146 EGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK----SVVTYNAF 201

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYS---PNEGTY-NAIAMLCE----------QGKVQE 396
           I+ L + G ++LV    + M  R++S   PN+ T+ NAI                G V +
Sbjct: 202 ISGLMENGVMNLVPSVFNLM--RKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMK 259

Query: 397 AFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVR 456
             F F+++       M+  C+      C K + Y  F  L +      T +  +++S++ 
Sbjct: 260 KEFQFETMVGTALIDMYSKCR------CWK-SAYIVFTELKD------TRNLISWNSVIS 306

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           GM   G  + A+E+F  L+     PD   +N+LI GF +  +   + + F+RM++   VP
Sbjct: 307 GMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVP 366

Query: 517 NEITYTILVEG----LAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEFT 568
           +    T L+         +N  +I   ++K    R++   +++  + M+  L  + 
Sbjct: 367 SLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWA 422



 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 38/235 (16%)

Query: 137 YTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT 196
           +  +++ +   G    A++L EK++  G +  + T+N+L+ G    GK+ ++ +  +R+ 
Sbjct: 301 WNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERML 360

Query: 197 KKGLKPNVFTYSFLLEG-------------------AYKERGV----------------D 221
              + P++   + LL                     A  ER +                 
Sbjct: 361 SVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSS 420

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
            A ++ D    +  +P  V +NV+++G  K G  E AIE+F  L  +   PS+ ++  +L
Sbjct: 421 WARRIFDRFEPKPKDP--VFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVL 478

Query: 282 RSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLDEM 335
            +  + G  E+ + +   M EE    PS      +I  L   GR  +A EV+D+M
Sbjct: 479 SACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 144/370 (38%), Gaps = 72/370 (19%)

Query: 138 THLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTK 197
           T LV+   R G    A ++ EKV         VTYN  + GL  +G +N    + + + K
Sbjct: 168 TSLVSMYSRCGEWVLAARMFEKVP----HKSVVTYNAFISGLMENGVMNLVPSVFNLMRK 223

Query: 198 -KGLKPNVFTY-------SFLLEGAYKERGVDEAMK-----------LLDDIIAR----- 233
               +PN  T+       + LL   Y  +     MK            L D+ ++     
Sbjct: 224 FSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWK 283

Query: 234 ---------GGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSL 284
                        NL+S+N +++G+   G+ E A+ELF  L ++G  P   ++N L+   
Sbjct: 284 SAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGF 343

Query: 285 CYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLS----------LHGRTEQAF----- 329
              G+  EA      M    + PS+     L+++ S          +HG   +A      
Sbjct: 344 SQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDI 403

Query: 330 ----EVLDEMTRSGFNVTA--------------TSYNPIIARLCKEGKVDLVVQCLDQMI 371
                ++D   + G +  A                +N +I+   K G+ +  ++  + + 
Sbjct: 404 FVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLR 463

Query: 372 CRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQNC-PMHDYCKNVISMLCRKGNT 429
             +  P+  T+ A+   C   G V++   IF+ +  +    P  ++   +I +L R G  
Sbjct: 464 EEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRL 523

Query: 430 YPAFQMLYEM 439
             A +++ +M
Sbjct: 524 REAKEVIDQM 533


>AT1G68980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:25933023-25934882 FORWARD
           LENGTH=619
          Length = 619

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 165/402 (41%), Gaps = 46/402 (11%)

Query: 96  KPDVAQATQLLYDLCKSNKA-RKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAM 154
           KPD+  +   L   C+  ++   A  ++E +   G+ PD   +  L     R+G      
Sbjct: 184 KPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKIS 243

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVF---TYSFLL 211
           +L + ++  GF +  + Y++++ G    G L+ +  ++    K   + + F   TY  L+
Sbjct: 244 ELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVILCSLKGVGEASSFSEETYCELV 303

Query: 212 EGAYKERGVD-------EAMKL-----------------------------LDDIIARGG 235
            G  + + V+       EA KL                             LD++ A+GG
Sbjct: 304 RGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKSILDELNAQGG 363

Query: 236 EPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANG 295
              +  Y  +L   CKEGRT +A +L  ++ + G    V +YN ++ +   +  +  A  
Sbjct: 364 SGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFLSALT 423

Query: 296 LLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDE-MTRSGFNVTATSYNPIIARL 354
           L  +M E  ++     Y  ++T L  + R E   E ++E M      V +  +N II   
Sbjct: 424 LFRDMRETRVADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAF 483

Query: 355 CKEGKVDLVVQCLDQMICRRYSPNEGTYNAIA---MLCEQGKVQEAFFIFQSLGNKQNCP 411
           CK G++        +M   +Y PN  TY ++    + CE  K  E   I++   +K+   
Sbjct: 484 CKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCE--KYFEVVVIWKEFKDKKAKL 541

Query: 412 MHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSS 453
            H      ++ L + G    A Q++ +  +     D + Y +
Sbjct: 542 EHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKA 583



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 146/356 (41%), Gaps = 19/356 (5%)

Query: 170 VTYNTLVKGLCSHGK-LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
           V  N  ++  C   + L  +  L++ +   G+KP+  ++ FL    Y  +G+ E +  L+
Sbjct: 188 VASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFL-AYLYARKGLREKISELE 246

Query: 229 DII-ARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR-DLPAKGFSPSVV--SYNILLRSL 284
           D++   G     + Y+ +++G  K G  + A ++    L   G + S    +Y  L+R  
Sbjct: 247 DLMDGLGFASRRILYSSMISGYVKSGDLDSASDVILCSLKGVGEASSFSEETYCELVRGF 306

Query: 285 CYEGRWEEANGLLAEMDE-EDLSPSV---VTYNIL--ITSLSLHGRTEQAFEVLDEMTRS 338
                 E    L+ E  + E +S  V   V + I+     L   G++     +LDE+   
Sbjct: 307 IESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKS-----ILDELNAQ 361

Query: 339 GFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEA 397
           G +     Y PI+   CKEG+     Q + ++       +  TYN  I     +     A
Sbjct: 362 GGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFLSA 421

Query: 398 FFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE-MTKCGFTPDSYTYSSLVR 456
             +F+ +   +   +      +++ L          + + E M        S+ ++S++ 
Sbjct: 422 LTLFRDMRETRVADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIH 481

Query: 457 GMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNK 512
             C+ G L +A   FR +    Y P+   Y +LI G+   ++    + I++   +K
Sbjct: 482 AFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKDK 537


>AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15009605-15012319 FORWARD
           LENGTH=904
          Length = 904

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/508 (20%), Positives = 209/508 (41%), Gaps = 59/508 (11%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIV----GSGIIPDAACYTHLVNFLCRRGN 149
           G++ +  +A  L+ +LC  ++ +K+ +V   ++      G +  A+ + H++     R N
Sbjct: 185 GRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHMMLEFGVRPN 244

Query: 150 ---IGYAMQLVEK---VEE------HGFQTGTV---TYNTLVKGLCSHGKLNQSLQLLDR 194
              IG  M L +K   VEE      H  + G V    Y++++         +++ +++D 
Sbjct: 245 VATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMITIYTRLRLYDKAEEVIDL 304

Query: 195 LTKKGLKPNVFTYSFLLEGAYKERGVDE-AMKLLDDIIARGGEPNLVSYNVLLTGLCKEG 253
           + +  ++  +  +  +L  AY ++G  E A  +L  + A G  PN+++YN L+TG  K  
Sbjct: 305 MKQDRVRLKLENWLVML-NAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIF 363

Query: 254 RTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYN 313
           + E A  LF  L   G  P   SY  ++        +EEA     E+      P+     
Sbjct: 364 KMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLF 423

Query: 314 ILITSLSLHGRTEQAFEVLDEMTRSG---------------------------------- 339
            LI   + +G  + A + +++MT  G                                  
Sbjct: 424 TLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGIILQAYEKVGKIDVVPCVLKGSFHNH 483

Query: 340 FNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLC-EQGKVQEAF 398
             +  TS++ ++    K G VD  +  L +   R  +     Y+ +   C E G++ +A 
Sbjct: 484 IRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKESGQLTDAV 543

Query: 399 FIF-QSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRG 457
            I+   + + +   +H     +I +    G    A ++   +   G   D   +S +VR 
Sbjct: 544 KIYNHKMESDEEINLH-ITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRM 602

Query: 458 MCREGMLDEALEIFRIL-EENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
             + G L+EA  +  I+ E+ D +PD+  +  ++  + K    D    ++ R+   G   
Sbjct: 603 YVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHW 662

Query: 517 NEITYTILVEGLAFENELDIAAGLMKEL 544
           N+  Y  ++   A    LD  +G  +E+
Sbjct: 663 NQEMYNCVINCCARALPLDELSGTFEEM 690



 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 117/608 (19%), Positives = 230/608 (37%), Gaps = 109/608 (17%)

Query: 48  ASAQISISPKDSI-FTLPNWRVGKNDQKSKEVRLNDAFLHLEYMVGKGQKPDVAQATQLL 106
           A   I +  +D +   L NW V  N   S++ ++  A   L  M   G  P++     L+
Sbjct: 298 AEEVIDLMKQDRVRLKLENWLVMLN-AYSQQGKMELAESILVSMEAAGFSPNIIAYNTLI 356

Query: 107 YDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQ 166
               K  K   A  +   +   G+ PD   Y  ++    R  N   A    ++++  G++
Sbjct: 357 TGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYK 416

Query: 167 TGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--------------------------- 199
             +    TL+     +G  + +++ ++ +T  G                           
Sbjct: 417 PNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGIILQAYEKVGKIDVVPCVL 476

Query: 200 -------LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKE 252
                  ++ N  ++S L+    K   VD+ + LL +   R        Y++L+    + 
Sbjct: 477 KGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKES 536

Query: 253 GRTEDAI-----------------------------------ELFRDLPAKGFSPSVVSY 277
           G+  DA+                                   +L+ +L + G     + +
Sbjct: 537 GQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGF 596

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMT 336
           +I++R     G  EEA  +L  MDE+ D+ P V  +  ++         ++   +   + 
Sbjct: 597 SIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIR 656

Query: 337 RSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG---- 392
           +SG +     YN +I    +   +D +    ++MI   ++PN  T+N +  +  +     
Sbjct: 657 KSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFK 716

Query: 393 KVQEAFFIFQSLG----------------NKQNCPMHDYCKNV----ISMLCRKGNT-YP 431
           KV E F + +  G                NK    M    KN+     S+     NT   
Sbjct: 717 KVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLD 776

Query: 432 AF----------QMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
           A+           +L  M K    PD YTY+ ++     +G +DE  ++ + L+E+   P
Sbjct: 777 AYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGP 836

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLM 541
           D+ +YN LI  +      + ++ + + M  +  +P+++TYT LV  L   +E      + 
Sbjct: 837 DLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEF--LEAIK 894

Query: 542 KELYMREV 549
             L+M+++
Sbjct: 895 WSLWMKQM 902



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/386 (19%), Positives = 163/386 (42%), Gaps = 11/386 (2%)

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           ++++LV     HG ++  L LL     +        Y  L+    +   + +A+K+ +  
Sbjct: 490 SFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHK 549

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           +    E NL   + ++      G   +A +L+ +L + G     + ++I++R     G  
Sbjct: 550 MESDEEINLHITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSL 609

Query: 291 EEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
           EEA  +L  MDE+ D+ P V  +  ++         ++   +   + +SG +     YN 
Sbjct: 610 EEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNC 669

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGK----VQEAFFIFQSLG 405
           +I    +   +D +    ++MI   ++PN  T+N +  +  + K    V E F +     
Sbjct: 670 VINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLL----- 724

Query: 406 NKQNCPMHDYCKNVISMLCRKGNTYPAFQ-MLYEMTKCGFTPDSYTYSSLVRGMCREGML 464
            K++  +     N I     K   Y      +  M   GF+     Y++L+    ++  +
Sbjct: 725 AKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQM 784

Query: 465 DEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTIL 524
           ++   I + ++++   PD   YN +I  + +    D   ++ + +   G  P+  +Y  L
Sbjct: 785 EKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTL 844

Query: 525 VEGLAFENELDIAAGLMKELYMREVL 550
           ++       ++ A GL+KE+  R ++
Sbjct: 845 IKAYGIGGMVEEAVGLVKEMRGRNII 870



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 134/342 (39%), Gaps = 38/342 (11%)

Query: 65  NWRVGKNDQKSKEVRLNDAFLHLEY-MVGKGQKPDVAQATQLLYDLCKSNKARKAVRVME 123
           ++R G ND + + + +N+  + + Y  +  GQ  +         + C    A K    M 
Sbjct: 106 SFRRGSNDLELENLFVNNGEIDVNYSAIKPGQSLEHCNGILKRLESCSDTNAIKFFDWMR 165

Query: 124 MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKV-EEHGFQTGTVTYNTLVKGLCSH 182
                 ++ +   Y+ ++  L RR     A  L++++   H FQ     +NT++      
Sbjct: 166 --CNGKLVGNFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKK 223

Query: 183 GKLNQSLQLLDRLTKKGLKPNVFTYSFLL--------------------------EGAYK 216
           G +  + +    + + G++PNV T   L+                          E AY 
Sbjct: 224 GNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYS 283

Query: 217 E--------RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAK 268
                    R  D+A +++D +        L ++ V+L    ++G+ E A  +   + A 
Sbjct: 284 SMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAA 343

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           GFSP++++YN L+       + E A GL   +    L P   +Y  +I         E+A
Sbjct: 344 GFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEA 403

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQM 370
                E+ R G+   + +   +I    K G  D  ++ ++ M
Sbjct: 404 KHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDM 445



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 15/259 (5%)

Query: 290 WEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY-- 347
           W   NG L          + V Y++++  L      ++A +++ E+   GF+    SY  
Sbjct: 163 WMRCNGKLV--------GNFVAYSLILRVLGRREEWDRAEDLIKELC--GFHEFQKSYQV 212

Query: 348 -NPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQG-KVQEAFFIFQSLG 405
            N +I    K+G V L  +    M+     PN  T   +  L ++   V+EA F F  + 
Sbjct: 213 FNTVIYACTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHM- 271

Query: 406 NKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLD 465
            K          ++I++  R      A +++  M +         +  ++    ++G ++
Sbjct: 272 RKFGIVCESAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKME 331

Query: 466 EALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILV 525
            A  I   +E   + P+I  YN LI G+ K  + + +  +F R+ N G  P+E +Y  ++
Sbjct: 332 LAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMI 391

Query: 526 EGLAFENELDIAAGLMKEL 544
           EG    +  + A    +EL
Sbjct: 392 EGWGRADNYEEAKHYYQEL 410


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 122/536 (22%), Positives = 208/536 (38%), Gaps = 126/536 (23%)

Query: 142 NFLCRR----GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS-LQLLDRLT 196
           NFL  +    G+  Y+  L    EE        ++N +++GL +    +++ L L  R+ 
Sbjct: 69  NFLIPKAVELGDFNYSSFLFSVTEE----PNHYSFNYMIRGLTNTWNDHEAALSLYRRMK 124

Query: 197 KKGLKPNVFTYSFLLEGAYK--ERGVDE-------------------------------- 222
             GLKP+ FTY+F+     K  E GV                                  
Sbjct: 125 FSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVG 184

Query: 223 -AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
            A KL D+I  R    + VS+N +++G  + G  +DA++LFR +  +GF P   +   +L
Sbjct: 185 YARKLFDEITER----DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSML 240

Query: 282 RSLCYEGRWEEANGLLAEMD--------------------------------EEDLSPSV 309
            +  + G       LL EM                                  + +    
Sbjct: 241 GACSHLGDLRTGR-LLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDR 299

Query: 310 VTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ---- 365
           V +  +IT  S +G++ +AF++  EM ++G +  A + + +++     G ++L  Q    
Sbjct: 300 VAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETH 359

Query: 366 ----CLDQMI------------CRRYS-----------PNEGTYNA-IAMLCEQGKVQEA 397
                L   I            C R              NE T+NA I     QG  +EA
Sbjct: 360 ASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEA 419

Query: 398 FFIFQSLGNKQNCPMHDYC-KNVISMLCRKGNTYPAFQMLYEMTKC-GFTPDSYTYSSLV 455
             +F    ++ + P  D     V+S     G  +   +  +EM+   G  P    Y++++
Sbjct: 420 LLLF----DRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNII 475

Query: 456 RGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSI--EIFQRMVNKG 513
             + R GMLDEA E    +E     PD +   A ILG C ++R D++I  +  + ++   
Sbjct: 476 DLLSRAGMLDEAWE---FMERFPGKPD-EIMLAAILGAC-HKRKDVAIREKAMRMLMEMK 530

Query: 514 CVPNEITYTILVEGLAFENELDIAAGLMKELYMREVLSRSTVDRLSMQYDLKEFTA 569
              N   Y I    LA     D +A +   +  R V+       + ++ +L EF A
Sbjct: 531 EAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLA 586



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 8/205 (3%)

Query: 130 IIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSL 189
           I  D   +T ++    + G    A +L  ++E+ G      T +T++    S G L    
Sbjct: 295 IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGK 354

Query: 190 QLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGL 249
           Q+    ++  L+ N++  + L++   K   V+EA+++ + +  +    N  ++N ++T  
Sbjct: 355 QIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVK----NEATWNAMITAY 410

Query: 250 CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEE-DLSPS 308
             +G  ++A+ LF  +      PS +++  +L +  + G   +      EM     L P 
Sbjct: 411 AHQGHAKEALLLFDRMSV---PPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPK 467

Query: 309 VVTYNILITSLSLHGRTEQAFEVLD 333
           +  Y  +I  LS  G  ++A+E ++
Sbjct: 468 IEHYTNIIDLLSRAGMLDEAWEFME 492


>AT2G28050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:11938265-11939653 REVERSE
           LENGTH=462
          Length = 462

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 4/262 (1%)

Query: 87  LEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGI-IPDAACYTHLVNFLC 145
            EYM     K D    T  L +L + ++   A     ++V SGI +      T +V  LC
Sbjct: 162 FEYMKNNEVKIDEKTCTLHLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLC 221

Query: 146 RRGNIGYAMQLVEKVE-EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLT-KKGLKPN 203
             G I  A +LVE++    G +   VT+ +++ G C      + L L+ +L  K+ +  +
Sbjct: 222 CNGEITRARELVEEMGLVKGVKANIVTFKSMI-GCCVKRWDFEELDLVLKLMEKESVMLD 280

Query: 204 VFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFR 263
           + +Y  L++G      V+EA +L+  +  +        YN+++ G  + G  E  IEL+ 
Sbjct: 281 LDSYKVLIDGFTSYGKVEEAERLVLMMHDKKLRVESYLYNLIMNGYSRFGLVEKVIELYS 340

Query: 264 DLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHG 323
           ++ ++G +P+  +Y +L+  LC  G+  EA   L E+   +       Y+ L       G
Sbjct: 341 EMSSRGVTPNKDTYWVLMNGLCKAGKVCEAMSFLNELRVNEFEIDEEMYSTLSEECYRVG 400

Query: 324 RTEQAFEVLDEMTRSGFNVTAT 345
             +++ EV+ EM R GF   AT
Sbjct: 401 MIDKSLEVVAEMIRDGFIPGAT 422



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 41/339 (12%)

Query: 114 KARKAVRVMEMIVGSGI-IPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV-T 171
           K  + V V E +  + + I +  C  HL+N L R   +  A      + E G    TV +
Sbjct: 154 KFSEVVEVFEYMKNNEVKIDEKTCTLHLLN-LKRCDQMELARDFFSLMVESGIDVVTVYS 212

Query: 172 YNTLVKGLCSHGKLNQSLQLLDRL-TKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
              +V  LC +G++ ++ +L++ +   KG+K N+ T+  ++    K    +E   +L  +
Sbjct: 213 LTVVVTVLCCNGEITRARELVEEMGLVKGVKANIVTFKSMIGCCVKRWDFEELDLVLKLM 272

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
                  +L SY VL+ G                           SY          G+ 
Sbjct: 273 EKESVMLDLDSYKVLIDGF-------------------------TSY----------GKV 297

Query: 291 EEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPI 350
           EEA  L+  M ++ L      YN+++   S  G  E+  E+  EM+  G      +Y  +
Sbjct: 298 EEAERLVLMMHDKKLRVESYLYNLIMNGYSRFGLVEKVIELYSEMSSRGVTPNKDTYWVL 357

Query: 351 IARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSLGNKQN 409
           +  LCK GKV   +  L+++    +  +E  Y+ ++  C + G + ++  +   +     
Sbjct: 358 MNGLCKAGKVCEAMSFLNELRVNEFEIDEEMYSTLSEECYRVGMIDKSLEVVAEMIRDGF 417

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDS 448
            P    C+ +   L  + N   A  ++  + KCG  P S
Sbjct: 418 IPGATICERLADSL-FEVNRKEAQMLITIVVKCGIKPKS 455



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 308 SVVTYNILITSLSLHGRTEQAFEVLDEM-TRSGFNVTATSYNPIIARLCKEG---KVDLV 363
           +V +  +++T L  +G   +A E+++EM    G      ++  +I    K     ++DLV
Sbjct: 209 TVYSLTVVVTVLCCNGEITRARELVEEMGLVKGVKANIVTFKSMIGCCVKRWDFEELDLV 268

Query: 364 VQCLDQMICRRYSPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVI-S 421
           ++ +++        +  +Y   I      GKV+EA  +   + +K+   +  Y  N+I +
Sbjct: 269 LKLMEK---ESVMLDLDSYKVLIDGFTSYGKVEEAERLVLMMHDKK-LRVESYLYNLIMN 324

Query: 422 MLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMP 481
              R G      ++  EM+  G TP+  TY  L+ G+C+ G + EA+     L  N++  
Sbjct: 325 GYSRFGLVEKVIELYSEMSSRGVTPNKDTYWVLMNGLCKAGKVCEAMSFLNELRVNEFEI 384

Query: 482 DIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVP 516
           D + Y+ L     +    D S+E+   M+  G +P
Sbjct: 385 DEEMYSTLSEECYRVGMIDKSLEVVAEMIRDGFIP 419


>AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5387444-5389690 FORWARD
           LENGTH=687
          Length = 687

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 177/412 (42%), Gaps = 32/412 (7%)

Query: 126 VGSGIIPDAACYTHLVNFLCRR--GNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHG 183
           +  G+ P+      L  F C R  G++ YA +L  K+ E       V +N ++KG     
Sbjct: 58  ITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE----PDVVVWNNMIKGWSKVD 113

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD-DIIARGGEPNLVSY 242
              + ++L   + K+G+ P+  T+ FLL G  ++ G     K L   ++  G   NL   
Sbjct: 114 CDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQ 173

Query: 243 NVLLT--GLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEM 300
           N L+    LC        +++ R +  +     V S+N+++        +EE+  LL EM
Sbjct: 174 NALVKMYSLC------GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM 227

Query: 301 DEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKV 360
           +   +SP+ VT  +++++ S     +    V + ++      +    N ++      G++
Sbjct: 228 ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEM 287

Query: 361 DLVVQCLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNV 419
           D+ V+    M  R    +  ++ +I     E+G ++ A   F  +      P+ D     
Sbjct: 288 DIAVRIFRSMKAR----DVISWTSIVKGYVERGNLKLARTYFDQM------PVRDRISWT 337

Query: 420 ISM--LCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEEN 477
           I +    R G    + ++  EM   G  PD +T  S++      G L+    I   +++N
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397

Query: 478 DYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
               D+   NALI  + K   ++ + ++F  M  +    ++ T+T +V GLA
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR----DKFTWTAMVVGLA 445



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/481 (18%), Positives = 190/481 (39%), Gaps = 59/481 (12%)

Query: 96  KPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGN-IGYAM 154
           +PDV     ++    K +   + VR+   ++  G+ PD+  +  L+N L R G  +    
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGK 155

Query: 155 QLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGA 214
           +L   V + G  +     N LVK     G ++ +  + DR  K+    +VF+++ ++ G 
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKE----DVFSWNLMISGY 211

Query: 215 YKERGVDEAMKLL---------------------------DDIIAR--------GGEPNL 239
            + +  +E+++LL                            D+  R          EP+L
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
              N L+      G  + A+ +FR + A+     V+S+  +++     G  + A     +
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKAR----DVISWTSIVKGYVERGNLKLARTYFDQ 327

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M   D     +++ I+I      G   ++ E+  EM  +G      +   ++      G 
Sbjct: 328 MPVRDR----ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383

Query: 360 VDLVVQCLDQMICRRYSPNEGTY-NA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMHDYCK 417
           ++ + + +   I +    N+    NA I M  + G  ++A  +F  +  +       +  
Sbjct: 384 LE-IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK---FTWTA 439

Query: 418 NVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIF-RILEE 476
            V+  L   G    A ++ ++M      PD  TY  ++      GM+D+A + F ++  +
Sbjct: 440 MVVG-LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSD 498

Query: 477 NDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDI 536
           +   P + +Y  ++    +      + EI ++M      PN I +  L+      N+  +
Sbjct: 499 HRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN---PNSIVWGALLGASRLHNDEPM 555

Query: 537 A 537
           A
Sbjct: 556 A 556


>AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1028292-1030361 FORWARD
           LENGTH=689
          Length = 689

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 192/448 (42%), Gaps = 42/448 (9%)

Query: 125 IVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGK 184
           +V SGI   +   T L++   + G+I  A ++     EH      V +  ++ G   +G 
Sbjct: 268 LVKSGIELSSCLVTSLLDMYVKCGDISNARRVFN---EHS-HVDLVMWTAMIVGYTHNGS 323

Query: 185 LNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI----IARG-GEPNL 239
           +N++L L  ++    +KPN  T + +L G     G+ E ++L   +    I  G  + N+
Sbjct: 324 VNEALSLFQKMKGVEIKPNCVTIASVLSGC----GLIENLELGRSVHGLSIKVGIWDTNV 379

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
            +  V +   C + R  DA  +F     K     +V++N ++      G   EA  L   
Sbjct: 380 ANALVHMYAKCYQNR--DAKYVFEMESEK----DIVAWNSIISGFSQNGSIHEALFLFHR 433

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M+ E ++P+ VT   L ++ +  G       +     + GF + ++S +   A L     
Sbjct: 434 MNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGF-LASSSVHVGTALL----- 487

Query: 360 VDLVVQCLDQMICRRY-----SPNEGTYNA-IAMLCEQGKVQEAFFIFQSLGNKQNCPMH 413
            D   +C D    R         N  T++A I    +QG    +  +F+ +  KQ  P  
Sbjct: 488 -DFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNE 546

Query: 414 DYCKNVISMLCRKGNTYPAFQMLYEMTK-CGFTPDSYTYSSLVRGMCREGMLDEALEIFR 472
               +++S     G      +    M K   FTP +  Y+ +V  + R G L++AL+I  
Sbjct: 547 STFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDI-- 604

Query: 473 ILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGL---- 528
            +E+    PD+  + A + G   + R DL   + ++M++    P++ +Y +LV  L    
Sbjct: 605 -IEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLH--PDDASYYVLVSNLYASD 661

Query: 529 AFENELDIAAGLMKELYMREVLSRSTVD 556
              N+      LMK+  + ++   ST++
Sbjct: 662 GRWNQAKEVRNLMKQRGLSKIAGHSTME 689



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 30/369 (8%)

Query: 169 TVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLD 228
            V + +++ G   +    + L L +R+ +  +  N +TY  L+    K   + +      
Sbjct: 207 VVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHG 266

Query: 229 DIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEG 288
            ++  G E +      LL    K G   +A  +F +         +V +  ++    + G
Sbjct: 267 CLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHS----HVDLVMWTAMIVGYTHNG 322

Query: 289 RWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRS--GFNVTATS 346
              EA  L  +M   ++ P+ VT   + + LS  G  E       E+ RS  G ++    
Sbjct: 323 SVNEALSLFQKMKGVEIKPNCVT---IASVLSGCGLIENL-----ELGRSVHGLSIKVGI 374

Query: 347 YNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAM------LCEQGKVQEAFFI 400
           ++  +A       V +  +C      +     E   + +A         + G + EA F+
Sbjct: 375 WDTNVAN----ALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFL 430

Query: 401 FQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTY--SSLVRGM 458
           F  + ++   P      ++ S     G+      +     K GF   S  +  ++L+   
Sbjct: 431 FHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFY 490

Query: 459 CREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNE 518
            + G    A  IF  +EE + +     ++A+I G+ K   T  S+E+F+ M+ K   PNE
Sbjct: 491 AKCGDPQSARLIFDTIEEKNTI----TWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNE 546

Query: 519 ITYTILVEG 527
            T+T ++  
Sbjct: 547 STFTSILSA 555



 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 174/431 (40%), Gaps = 45/431 (10%)

Query: 124 MIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHG 183
           ++ G+G++ D +  T LV+     G    A  + +++ E  F      +  +++  C + 
Sbjct: 66  VLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYL----WKVMLRCYCLNK 121

Query: 184 KLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYN 243
           +  + ++L D L K G + +   +S  L+   + + +D   K+   ++     P+    N
Sbjct: 122 ESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKV---PSFD--N 176

Query: 244 VLLTGL----CKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
           V+LTGL     K G  + A ++F D+  +    +VV +  ++         EE   L   
Sbjct: 177 VVLTGLLDMYAKCGEIKSAHKVFNDITLR----NVVCWTSMIAGYVKNDLCEEGLVLFNR 232

Query: 300 MDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGK 359
           M E ++  +  TY  LI + +      Q       + +SG  +++     ++        
Sbjct: 233 MRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLL-------- 284

Query: 360 VDLVVQCLDQMICRRYSPNEGTYNAIAMLC-------EQGKVQEAFFIFQSLGNKQNCPM 412
            D+ V+C D    RR   NE ++  + M           G V EA  +FQ +   +  P 
Sbjct: 285 -DMYVKCGDISNARRVF-NEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKP- 341

Query: 413 HDYCKNVISMLCRKG---NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
              C  + S+L   G   N      +     K G   D+   ++LV    +     +A  
Sbjct: 342 --NCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKY 398

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           +F +  E D    I  +N++I GF +      ++ +F RM ++   PN +T   L    A
Sbjct: 399 VFEMESEKD----IVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACA 454

Query: 530 FENELDIAAGL 540
               L + + L
Sbjct: 455 SLGSLAVGSSL 465


>AT1G80150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:30148738-30149931 FORWARD
           LENGTH=397
          Length = 397

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 162 EHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVD 221
           ++G     V++N  +K  C  G L+ +   +  + K GL P+V TY+ L+   YK     
Sbjct: 170 KYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCV 229

Query: 222 EAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILL 281
               L + ++ +G +PNL ++NV +  L    R  DA +L   +P     P  ++YN+++
Sbjct: 230 IGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVI 289

Query: 282 RSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFN 341
           +        + A  +   M  +   P++  Y  +I  L   G  + A+ +  +  R  + 
Sbjct: 290 KGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWY 349

Query: 342 VTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSP 377
               +   ++  L K+G++D   + + +++ RR  P
Sbjct: 350 PNLDTVEMLLKGLVKKGQLD-QAKSIMELVHRRVPP 384



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 38/332 (11%)

Query: 231 IARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRW 290
           + +G     +   ++L G  K G T+ A++ F ++   G   SV S+N  L+ L +    
Sbjct: 100 LPQGRREGFIVRIIMLYG--KAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDL 157

Query: 291 EEANGLLAEMDEE-DLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNP 349
                 L +   +  +    V++NI I S    G  + A+  + EM +SG      +Y  
Sbjct: 158 HTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTT 217

Query: 350 IIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAIAMLCEQGKVQEAFFIFQSLGNKQN 409
           +I+ L K  +  +     + M+ +   PN  T+N                          
Sbjct: 218 LISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNV------------------------- 252

Query: 410 CPMHDYCKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALE 469
                     I  L  +   + A  +L  M K    PDS TY+ +++G       D A  
Sbjct: 253 ---------RIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAER 303

Query: 470 IFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLA 529
           ++  +    Y P++  Y  +I   CK    DL+  + +  + K   PN  T  +L++GL 
Sbjct: 304 VYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLV 363

Query: 530 FENELDIAAGLMKELYMREVLSRSTVDRLSMQ 561
            + +LD A  +M EL  R V    +   LS++
Sbjct: 364 KKGQLDQAKSIM-ELVHRRVPPFRSKQLLSLK 394



 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 97/209 (46%)

Query: 129 GIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQS 188
           GI  DA  +   +   C  G +  A   + ++E+ G     VTY TL+  L  H +    
Sbjct: 172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query: 189 LQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTG 248
             L + +  KG KPN+ T++  ++     R   +A  LL  +     EP+ ++YN+++ G
Sbjct: 232 NGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 249 LCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
                  + A  ++  +  KG+ P++  Y  ++  LC  G ++ A  +  +   +   P+
Sbjct: 292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           + T  +L+  L   G+ +QA  +++ + R
Sbjct: 352 LDTVEMLLKGLVKKGQLDQAKSIMELVHR 380



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 124/273 (45%), Gaps = 7/273 (2%)

Query: 131 IPDAACYTHLVNFLCRRGNIGYAMQLVE---KVEEHGFQTGTVTYNTLVKGLCSHGKLNQ 187
           +P       +V  +   G  G   Q ++    ++ +G +    ++N  ++ L  +  L+ 
Sbjct: 100 LPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHT 159

Query: 188 SLQLL-DRLTKKGLKPNVFTYSFLLEGAYKERGV-DEAMKLLDDIIARGGEPNLVSYNVL 245
             + L D  +K G+  +  +++  ++ ++ E G+ D A   + ++   G  P++V+Y  L
Sbjct: 160 IWEFLHDAPSKYGIDIDAVSFNIAIK-SFCELGILDGAYMAMREMEKSGLTPDVVTYTTL 218

Query: 246 LTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDL 305
           ++ L K  R      L+  +  KG  P++ ++N+ ++ L    R  +AN LL  M +  +
Sbjct: 219 ISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQV 278

Query: 306 SPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQ 365
            P  +TYN++I    L    + A  V   M   G+      Y  +I  LCK G  DL   
Sbjct: 279 EPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYT 338

Query: 366 CLDQMICRRYSPNEGTYNAIAM-LCEQGKVQEA 397
                + +++ PN  T   +   L ++G++ +A
Sbjct: 339 MCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQA 371



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%)

Query: 80  LNDAFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTH 139
           L+ A++ +  M   G  PDV   T L+  L K  +      +  ++V  G  P+   +  
Sbjct: 193 LDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNV 252

Query: 140 LVNFLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
            + FL  R     A  L+  + +   +  ++TYN ++KG       + + ++   +  KG
Sbjct: 253 RIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKG 312

Query: 200 LKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDA 258
            KPN+  Y  ++    K    D A  +  D + +   PNL +  +LL GL K+G+ + A
Sbjct: 313 YKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQA 371


>AT5G67570.1 | Symbols: EMB246, DG1, EMB1408 | Tetratricopeptide
           repeat (TPR)-like superfamily protein |
           chr5:26952352-26955480 FORWARD LENGTH=798
          Length = 798

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/439 (19%), Positives = 182/439 (41%), Gaps = 42/439 (9%)

Query: 94  GQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYA 153
           G+K    QA+ +++    S+K RK +R                YT L++ L        A
Sbjct: 228 GRKQSWKQASAVVH-WVYSDKKRKHLR------------SRFVYTKLLSVLGFARRPQEA 274

Query: 154 MQLVEK-VEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           +Q+  + + +         Y+ +   L   G L + L++++R+ +K   P   T +    
Sbjct: 275 LQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK---PTKLTKNL--- 328

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
              +++  D  +           EP+LV YN +L       + +    +F +L   G  P
Sbjct: 329 ---RQKNWDPVL-----------EPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRP 374

Query: 273 SVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVL 332
           +  +Y + +  +   G+++  +    +M     +P  +TY +L+ +L   G+ E+A E +
Sbjct: 375 NGATYGLAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAV 434

Query: 333 DEMTRSGFNVTATSYNPIIARLCKEGKV-DLVVQCLDQMICRRYSPNEGTYNA-IAMLCE 390
            +M + G   T + Y  +   LC  G+  D +++           P E T+   IA    
Sbjct: 435 RDMEQKGVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLN 494

Query: 391 QGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKGNTYPAFQMLYE----MTKCGFTP 446
            G V +   IFQ + +K  C  +    N++  +  + + +   + L+E      +    P
Sbjct: 495 GGHVDDCMAIFQYMKDK--CDPNIGTANMMLKVYGRNDMFSEAKELFEEIVSRKETHLVP 552

Query: 447 DSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIF 506
           + YTYS ++    R    +    +++ +  + Y  D   + ++++   +  +  L    F
Sbjct: 553 NEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEHAF 612

Query: 507 QRMVNKGCVPNEITYTILV 525
             ++  G +P+ + +T L+
Sbjct: 613 DAVLEDGEIPHPLFFTELL 631



 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 140/345 (40%), Gaps = 55/345 (15%)

Query: 205 FTYSFLLEGAYKERGVDEAMKLLDDIIA-RGGEPNLVSYNVLLTGLCKEGRTED---AIE 260
           F Y+ LL      R   EA+++ + ++  R   P++ +Y+ +   L + G  ++    IE
Sbjct: 256 FVYTKLLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIE 315

Query: 261 LFRDLPAK------------GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPS 308
             R  P K               P +V YN +L +     +W+  + +  E+ +  L P+
Sbjct: 316 RMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPN 375

Query: 309 VVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLD 368
             TY + +  +   G+ ++  +   +M  SG    A +Y  ++  L +EGK++  V+ + 
Sbjct: 376 GATYGLAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVR 435

Query: 369 QMICRRYSPNEGTYNAIAM-LCEQGKVQEAFFIFQSLGNKQNCPMHDYCKNVISMLCRKG 427
            M  +        Y  +A  LC  G+  +A      +   +NC                 
Sbjct: 436 DMEQKGVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENC----------------- 478

Query: 428 NTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDIDNYN 487
                             P   T++ L+      G +D+ + IF+ +++    P+I   N
Sbjct: 479 -----------------RPLEITFTGLIAASLNGGHVDDCMAIFQYMKDK-CDPNIGTAN 520

Query: 488 ALILGFCKYQRTDLSIEIFQRMVNKG---CVPNEITYTILVEGLA 529
            ++  + +      + E+F+ +V++     VPNE TY+ ++E  A
Sbjct: 521 MMLKVYGRNDMFSEAKELFEEIVSRKETHLVPNEYTYSFMLEASA 565


>AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11960553-11962289 FORWARD
           LENGTH=578
          Length = 578

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 194/444 (43%), Gaps = 31/444 (6%)

Query: 109 LCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTG 168
           L +  K ++ V V   +  SGI P +   T ++    +  N+     +  +  ++G   G
Sbjct: 79  LSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGL-CG 137

Query: 169 TVTYNTLVKGLCSH-GKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLL 227
            V   T + GL S  G +  + +  D + +K    N  +++ LL G  +   +DEA ++ 
Sbjct: 138 CVYVQTGLVGLYSRLGYIELAKKAFDDIAEK----NTVSWNSLLHGYLESGELDEARRVF 193

Query: 228 DDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYE 287
           D I     E + VS+N++++   K+G   +A  LF  +P K  SP+  S+NIL+      
Sbjct: 194 DKI----PEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLK--SPA--SWNILIGGYVNC 245

Query: 288 GRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNVTATSY 347
              + A      M +++     V++  +I+  +  G  + A E+   M++    V    Y
Sbjct: 246 REMKLARTYFDAMPQKN----GVSWITMISGYTKLGDVQSAEELFRLMSKKDKLV----Y 297

Query: 348 NPIIARLCKEGKVDLVVQCLDQMICRR--YSPNEGTYNAIAMLCEQ-GKVQEAFFIFQSL 404
           + +IA   + GK    ++   QM+ R     P+E T +++     Q G      ++ +S 
Sbjct: 298 DAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWV-ESY 356

Query: 405 GNKQNCPMHDY-CKNVISMLCRKGNTYPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGM 463
             +    + D    ++I +  + G+   AF+M   + K     D+ +YS+++ G    GM
Sbjct: 357 ITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNK----KDTVSYSAMIMGCGINGM 412

Query: 464 LDEALEIFRILEENDYMPDIDNYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTI 523
             EA  +F  + E    P++  +  L+  +          + F  M +    P+   Y I
Sbjct: 413 ATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHYGI 472

Query: 524 LVEGLAFENELDIAAGLMKELYMR 547
           +V+ L     L+ A  L+K + M+
Sbjct: 473 MVDMLGRAGRLEEAYELIKSMPMQ 496



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 29/228 (12%)

Query: 170 VTYNTLVKGLCSHGKLNQSLQLLDRLTKKG--LKPNVFTYSFLLE----------GAYKE 217
           + Y+ ++     +GK   +L+L  ++ ++   ++P+  T S ++           G + E
Sbjct: 295 LVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVE 354

Query: 218 RGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSY 277
             + E    +DD+++            L+    K G    A ++F +L  K      VSY
Sbjct: 355 SYITEHGIKIDDLLSTS----------LIDLYMKGGDFAKAFKMFSNLNKK----DTVSY 400

Query: 278 NILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTR 337
           + ++      G   EAN L   M E+ + P+VVT+  L+++ S  G  ++ ++  + M  
Sbjct: 401 SAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD 460

Query: 338 SGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMICRRYSPNEGTYNAI 385
                +A  Y  ++  L + G+++   + +  M  +   PN G + A+
Sbjct: 461 HNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQ---PNAGVWGAL 505


>AT3G60040.1 | Symbols:  | F-box family protein |
           chr3:22175937-22179728 REVERSE LENGTH=838
          Length = 838

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (54%)

Query: 223 AMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLR 282
           A+  L+ +   G +P+++ Y  L+ G    G  + A E+FR++  KG  P+V +YN ++R
Sbjct: 708 ALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIR 767

Query: 283 SLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQAFEVLDEMTRSGFNV 342
            LC  G + EA  LL EM+    +P+ V Y+ L+  L   G+  +A +V+ EM + G  V
Sbjct: 768 GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEMVKKGHYV 827

Query: 343 TATS 346
              S
Sbjct: 828 HLVS 831



 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 67/124 (54%)

Query: 153 AMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLE 212
           A+  +  ++E G     + Y TL+ G    G+L+++ ++   +T KG  PNVFTY+ ++ 
Sbjct: 708 ALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIR 767

Query: 213 GAYKERGVDEAMKLLDDIIARGGEPNLVSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSP 272
           G        EA  LL ++ +RG  PN V Y+ L+  L K G+  +A ++ +++  KG   
Sbjct: 768 GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEMVKKGHYV 827

Query: 273 SVVS 276
            +VS
Sbjct: 828 HLVS 831



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 183 GKLNQ---SLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDIIARGGEPNL 239
           GK N+   +L  L+ + + G+ P+V  Y+ L++G      +D+A ++  ++  +G  PN+
Sbjct: 700 GKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNV 759

Query: 240 VSYNVLLTGLCKEGRTEDAIELFRDLPAKGFSPSVVSYNILLRSLCYEGRWEEANGLLAE 299
            +YN ++ GLC  G   +A  L +++ ++G +P+ V Y+ L+  L   G+  EA  ++ E
Sbjct: 760 FTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKE 819

Query: 300 M 300
           M
Sbjct: 820 M 820



 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 426 KGNT-YPAFQMLYEMTKCGFTPDSYTYSSLVRGMCREGMLDEALEIFRILEENDYMPDID 484
           KGN    A   L  M + G  P    Y++L+ G    G LD+A E+FR +     +P++ 
Sbjct: 701 KGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVF 760

Query: 485 NYNALILGFCKYQRTDLSIEIFQRMVNKGCVPNEITYTILVEGLAFENELDIAAGLMKEL 544
            YN++I G C       +  + + M ++GC PN + Y+ LV  L    +L  A  ++KE+
Sbjct: 761 TYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEM 820



 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%)

Query: 111 KSNKARKAVRVMEMIVGSGIIPDAACYTHLVNFLCRRGNIGYAMQLVEKVEEHGFQTGTV 170
           K NK   A+  +  +   GI P    YT L++     G +  A ++  ++   G      
Sbjct: 701 KGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVF 760

Query: 171 TYNTLVKGLCSHGKLNQSLQLLDRLTKKGLKPNVFTYSFLLEGAYKERGVDEAMKLLDDI 230
           TYN++++GLC  G+  ++  LL  +  +G  PN   YS L+    K   + EA K++ ++
Sbjct: 761 TYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEM 820

Query: 231 IARGGEPNLVS 241
           + +G   +LVS
Sbjct: 821 VKKGHYVHLVS 831



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%)

Query: 269 GFSPSVVSYNILLRSLCYEGRWEEANGLLAEMDEEDLSPSVVTYNILITSLSLHGRTEQA 328
           G  PSV+ Y  L+      G  ++A  +  EM  +   P+V TYN +I  L + G   +A
Sbjct: 719 GIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREA 778

Query: 329 FEVLDEMTRSGFNVTATSYNPIIARLCKEGKVDLVVQCLDQMI 371
             +L EM   G N     Y+ ++  L K GK+    + + +M+
Sbjct: 779 CWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEMV 821



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%)

Query: 83  AFLHLEYMVGKGQKPDVAQATQLLYDLCKSNKARKAVRVMEMIVGSGIIPDAACYTHLVN 142
           A   L +M   G  P V   T L+     S +  KA  +   +   G +P+   Y  ++ 
Sbjct: 708 ALTTLNHMKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIR 767

Query: 143 FLCRRGNIGYAMQLVEKVEEHGFQTGTVTYNTLVKGLCSHGKLNQSLQLLDRLTKKG 199
            LC  G    A  L++++E  G     V Y+TLV  L   GKL+++ +++  + KKG
Sbjct: 768 GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVGYLRKAGKLSEARKVIKEMVKKG 824