Miyakogusa Predicted Gene
- Lj3g3v0965630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0965630.1 tr|B9SHS2|B9SHS2_RICCO DNA-directed RNA
polymerase OS=Ricinus communis GN=RCOM_0620590 PE=3
SV=1,90,0.0000000000003,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; RNA_pol_Rpb2_6,DNA-directed RNA p,CUFF.41883.1
(134 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:... 244 1e-65
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA p... 155 9e-39
AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:... 110 2e-25
AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr... 110 3e-25
AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclea... 110 3e-25
AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | chr... 108 1e-24
ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chrC... 55 1e-08
>AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 |
chr5:18247416-18257713 REVERSE LENGTH=1161
Length = 1161
Score = 244 bits (623), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 112/133 (84%), Positives = 123/133 (92%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
MGPIYYQKLKHMVLDKMHARG+GPR + RQPTEGK++NGGLR+GEMERDCLIAYGASML
Sbjct: 1028 MGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASML 1087
Query: 61 IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
I+ERLM+SSDPFEVQVCR+CGLLGYYNYKLK VC +CKNGD I+ MKLPYACKLL QEL
Sbjct: 1088 IYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQEL 1147
Query: 121 QSMNIVPRLKLEE 133
QSMN+VPRLKL E
Sbjct: 1148 QSMNVVPRLKLTE 1160
>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
polymerase family protein | chr4:11535684-11542200
REVERSE LENGTH=1188
Length = 1188
Score = 155 bits (391), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 88/129 (68%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
+GP YYQ+LKHMV DK+H+RG GP L RQP EG++R+GGLR GEMERDC+IA+GA+
Sbjct: 1048 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1107
Query: 61 IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
+ ERL SD + V VC CGL+ N K C CKN I + +PYACKLL QEL
Sbjct: 1108 LKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQEL 1167
Query: 121 QSMNIVPRL 129
SM I PR+
Sbjct: 1168 MSMAIAPRM 1176
>AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 |
chr1:10479322-10486670 REVERSE LENGTH=1178
Length = 1178
Score = 110 bits (276), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 19/152 (12%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
MGP+YYQ+L+HMV DK R G + L QP +G+ R GG+R GEMERD L+A+GAS L
Sbjct: 1021 MGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYL 1080
Query: 61 IFERLMLSSDPFEVQVCRSCGLL---GYYNYKLK-----IG-----------VCPSCKNG 101
+ +RL SSD VC CG L N + K IG C SCK
Sbjct: 1081 LHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTS 1140
Query: 102 DQISNMKLPYACKLLIQELQSMNIVPRLKLEE 133
+ + +PY + L EL SMNI L+L +
Sbjct: 1141 KGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1172
>AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A |
chr3:8567971-8573819 REVERSE LENGTH=1172
Length = 1172
Score = 110 bits (275), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/134 (43%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
MGP +YQ+L HM DK+ R GP + L RQP + R GG++ GEMERDCLIA+GAS
Sbjct: 1032 MGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1091
Query: 61 IFERLMLSSDPFEVQVCRSCGLLGYYNY---------KLKIGVCPSCKNGDQISNMKLPY 111
+ ERL SD ++ +CR C Y N K++ C C + D + + +PY
Sbjct: 1092 LHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPY 1149
Query: 112 ACKLLIQELQSMNI 125
KLL QEL SM I
Sbjct: 1150 GAKLLCQELFSMGI 1163
>AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclear RNA
polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172
Length = 1172
Score = 110 bits (275), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/134 (43%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
MGP +YQ+L HM DK+ R GP + L RQP + R GG++ GEMERDCLIA+GAS
Sbjct: 1032 MGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1091
Query: 61 IFERLMLSSDPFEVQVCRSCGLLGYYNY---------KLKIGVCPSCKNGDQISNMKLPY 111
+ ERL SD ++ +CR C Y N K++ C C + D + + +PY
Sbjct: 1092 LHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPY 1149
Query: 112 ACKLLIQELQSMNI 125
KLL QEL SM I
Sbjct: 1150 GAKLLCQELFSMGI 1163
>AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B |
chr3:6195323-6200204 FORWARD LENGTH=1055
Length = 1055
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
MGP +YQ+L HM +K+ R GP + L RQP + R GG+R GEMERDCLIA+GAS
Sbjct: 915 MGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASAN 974
Query: 61 IFERLMLSSDPFEVQVCRSCGLLGYYNY---------KLKIGVCPSCKNGDQISNMKLPY 111
+ ERL SD ++ +CR C Y N K++ C C + D + + +PY
Sbjct: 975 LHERLFTLSDSSQMHICRKCKT--YANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPY 1032
Query: 112 ACKLLIQELQSMNIV 126
KLL QEL SM I
Sbjct: 1033 GAKLLCQELFSMGIT 1047
>ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta |
chrC:23111-26329 REVERSE LENGTH=1072
Length = 1072
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 1 MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
+G Y KL H V DK+H R +G + +QP G+++ GG R+GEME L +G + +
Sbjct: 944 IGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHI 1003
Query: 61 IFERLMLSSDPFEV-QVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQE 119
+ E L SD Q ++G G P ++ P + +LL++E
Sbjct: 1004 LQEMLTYKSDHIRARQEVLGTTIIG--------GTIPKPEDA--------PESFRLLVRE 1047
Query: 120 LQSM 123
L+S+
Sbjct: 1048 LRSL 1051