Miyakogusa Predicted Gene
- Lj3g3v0951100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0951100.1 Non Chatacterized Hit- tr|I3T584|I3T584_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.71,0,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; seg,,CUFF.41840.1
(341 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36000.1 | Symbols: | Mitochondrial transcription terminatio... 291 4e-79
AT2G36000.2 | Symbols: | Mitochondrial transcription terminatio... 277 7e-75
AT2G34620.1 | Symbols: | Mitochondrial transcription terminatio... 192 2e-49
AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcrip... 173 1e-43
AT3G18870.1 | Symbols: | Mitochondrial transcription terminatio... 124 1e-28
AT5G55580.1 | Symbols: | Mitochondrial transcription terminatio... 110 2e-24
AT4G14605.1 | Symbols: | Mitochondrial transcription terminatio... 100 3e-21
AT1G78930.1 | Symbols: | Mitochondrial transcription terminatio... 91 9e-19
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription ter... 87 2e-17
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription term... 78 7e-15
AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription term... 78 9e-15
AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription term... 77 1e-14
AT2G44020.1 | Symbols: | Mitochondrial transcription terminatio... 77 2e-14
AT4G02990.1 | Symbols: | Mitochondrial transcription terminatio... 75 8e-14
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active... 64 1e-10
AT1G61960.1 | Symbols: | Mitochondrial transcription terminatio... 54 2e-07
AT1G62120.1 | Symbols: | Mitochondrial transcription terminatio... 51 1e-06
AT3G46950.1 | Symbols: | Mitochondrial transcription terminatio... 50 2e-06
AT1G62110.1 | Symbols: | Mitochondrial transcription terminatio... 49 6e-06
AT1G61970.2 | Symbols: | Mitochondrial transcription terminatio... 49 6e-06
AT1G61970.1 | Symbols: | Mitochondrial transcription terminatio... 49 6e-06
AT1G74120.1 | Symbols: | Mitochondrial transcription terminatio... 49 7e-06
>AT2G36000.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118182 FORWARD
LENGTH=333
Length = 333
Score = 291 bits (745), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/252 (57%), Positives = 195/252 (77%), Gaps = 4/252 (1%)
Query: 92 EKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITS--MDFSAIEFQRIVGMCPEI 149
EK++YL+S+GID +LI HP L++ +L+ ++S V+Y+T+ ++F+ +F+R+V MCPE+
Sbjct: 75 EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134
Query: 150 LTTKV-SDIIPVFTFLHREVHVKGS-DIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE 207
LT+ + S IPV TFL REV V D+++ + RRPRL+ CSV+++LRPTLYFLQ IGI
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194
Query: 208 EVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYF 267
+ KHT LLSCSV++K +PRIDYFE +GFSR AT+MF+RFPQLF SI N EPK Y
Sbjct: 195 DPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYL 254
Query: 268 VVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRLDLC 327
+VEMGRD++E+ EFPQYFSFSLENRIKPRH+ C GV F LPV+LKT+E FR+ L++C
Sbjct: 255 MVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTLEVC 314
Query: 328 VNSSTPLETSPL 339
+SS PL+TS L
Sbjct: 315 CDSSPPLKTSRL 326
>AT2G36000.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118333 FORWARD
LENGTH=318
Length = 318
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 185/239 (77%), Gaps = 4/239 (1%)
Query: 92 EKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITS--MDFSAIEFQRIVGMCPEI 149
EK++YL+S+GID +LI HP L++ +L+ ++S V+Y+T+ ++F+ +F+R+V MCPE+
Sbjct: 75 EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134
Query: 150 LTTKV-SDIIPVFTFLHREVHVKGS-DIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE 207
LT+ + S IPV TFL REV V D+++ + RRPRL+ CSV+++LRPTLYFLQ IGI
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194
Query: 208 EVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYF 267
+ KHT LLSCSV++K +PRIDYFE +GFSR AT+MF+RFPQLF SI N EPK Y
Sbjct: 195 DPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYL 254
Query: 268 VVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRLDL 326
+VEMGRD++E+ EFPQYFSFSLENRIKPRH+ C GV F LPV+LKT+E FR+ L++
Sbjct: 255 MVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTLEV 313
>AT2G34620.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:14577196-14578203 FORWARD
LENGTH=303
Length = 303
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 156/240 (65%), Gaps = 5/240 (2%)
Query: 90 FEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEI 149
+EK+L LE +GIDS + +P L +A L I+S + ++ S + RI+GMCP+I
Sbjct: 55 MKEKILCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKI 114
Query: 150 LTTKV-SDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE- 207
LT+ V +++ PVF FL ++HV + +RVI + PRL++ SV ++L+P L++LQ +G++
Sbjct: 115 LTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKD 174
Query: 208 -EVSKHTD--LLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKY 264
E + D LL SVE +P++ + E+IGFSR +A M R P LF SI+NN +PK
Sbjct: 175 LEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKL 234
Query: 265 NYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRL 324
+YF+ E+ L+ LKEFPQYF+FSLE RIKPRH + +E G+ L ++LK+++ F L
Sbjct: 235 DYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294
>AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial
transcription termination factor family protein |
chr2:900094-900945 REVERSE LENGTH=283
Length = 283
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 86 NDTG--FEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIV 143
+DTG F EK++YL+ + +D + +P L +A ++ + S ++S S RI+
Sbjct: 26 SDTGILFREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRIL 85
Query: 144 GMCPEILTTK-VSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQ 202
M P++LT+ S+I+PV FL E+ + DI + I+R PRL++ SV+ +LRP L FL+
Sbjct: 86 DMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLK 145
Query: 203 SIGIEE----VSKHTDLLSCSVEDKFLPRIDYFE-NIGFSRDDATSMFRRFPQLFCCSIK 257
++G S++T LL +VE +P+I+Y E +GF+R++ M R P L S+
Sbjct: 146 TLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVD 205
Query: 258 NNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSE 317
NNL PK +F+ EM D+KELK FPQYFSFSLE +IKPRH+ E G+ L +LK S+
Sbjct: 206 NNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSD 265
Query: 318 VTFRNRL 324
F + L
Sbjct: 266 GQFNHWL 272
>AT3G18870.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:6508515-6509339 REVERSE
LENGTH=274
Length = 274
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 14/245 (5%)
Query: 87 DTGFEEKVLYLESIGIDSFSLIENHPMLI--TASLADIKSTVEYITSMDFSAIEFQRIVG 144
T E + +L S+GI + +P L L+ I S V + S S +F R+V
Sbjct: 33 QTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSVILSAVNLLKSKGISDEDFPRLVF 87
Query: 145 MCPEIL--TTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQ 202
+CP++ T +S + PVF FL E+ + + +I P ++ V LRPTL +L+
Sbjct: 88 LCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVYLK 147
Query: 203 SIGIEEVSK----HTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKN 258
+G+ +++ + +L+ VE K ++ + ++IGF ++A + R P +F S+++
Sbjct: 148 ELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVED 206
Query: 259 NLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEV 318
NL PK+ + V +M R+L+ELK+FPQYF+FSL RI+PRH + V +L +L +
Sbjct: 207 NLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQ 266
Query: 319 TFRNR 323
F ++
Sbjct: 267 KFYSK 271
>AT5G55580.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:22515601-22517408 FORWARD
LENGTH=496
Length = 496
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 121/225 (53%), Gaps = 12/225 (5%)
Query: 91 EEKVLYLESIGI---DSFSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGMC 146
+E++ YL S+G+ D ++ P ++ ++ + +K+ + ++ + + +IV
Sbjct: 220 QERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAAT 279
Query: 147 PEILTTKVSDII-PVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFL-QSI 204
P + + V + + P +L EV +K +D+ +V+ P+++V ++ FL + +
Sbjct: 280 PSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKEL 339
Query: 205 G------IEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKN 258
G ++ V KH LL S++D FLPRI++ +IG D + Q+ S+++
Sbjct: 340 GAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLED 399
Query: 259 NLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVEL 303
NL+PKY Y V E+ ++ L ++P Y S SL+ RI+PRH+ VEL
Sbjct: 400 NLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVEL 444
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 168 VHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGI------EEVSKHTDLLSCSVE 221
V VK DIKR++ R+P+++ +V N L+ + FL +GI + V+ L S SVE
Sbjct: 229 VGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVE 288
Query: 222 DKFLPRIDYF-ENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMG--RD--LK 276
+ P I Y E +G D + + PQ+ + +Y + E+G RD +K
Sbjct: 289 NSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVK 348
Query: 277 ELKEFPQYFSFSLENRIKPRHKQCVELGVCFT--LPVLLKTSEV 318
+K+ PQ +S+++ PR +G+C + L VL ++V
Sbjct: 349 MVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQV 392
>AT4G14605.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:8378815-8380564 FORWARD
LENGTH=493
Length = 493
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 9/234 (3%)
Query: 94 VLYLESIGI---DSFSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGMCPEI 149
V +L +GI D +++ P + SL D +K T+ ++ ++ ++ +I+ P I
Sbjct: 236 VEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAI 295
Query: 150 LTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE-E 208
LT + FL + + I R++ R P ++ SV ++LRPT+ + +S+ ++
Sbjct: 296 LTYSRQKLTSTVEFLS-QTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVA 354
Query: 209 VSKHT--DLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNY 266
V H S+E P ++F GF D+ M R+ L+ S+K N+ PK++Y
Sbjct: 355 VLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDY 414
Query: 267 FVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTF 320
F M EL +FPQ+F +SL+ RIKPR++ GV L +L S + F
Sbjct: 415 FQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEF 467
>AT1G78930.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:29678285-29680648 REVERSE
LENGTH=591
Length = 591
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 8/232 (3%)
Query: 96 YLESI-GIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKV 154
Y ES+ +D I P+L+ S ++++ V+ + +++ P++L K
Sbjct: 344 YSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKP 403
Query: 155 SDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE------ 208
+ + V FL ++ + + +++ R P + CS+ L+ L FL G+
Sbjct: 404 QEFLKVVCFLE-DLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRI 462
Query: 209 VSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFV 268
+ K+ + L + LPR+ Y IG S + M R+F + SI L PK+ + V
Sbjct: 463 IKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLV 522
Query: 269 VEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTF 320
M + ++E+ E+P+YFS+SLE RIKPR + + TL +L ++ F
Sbjct: 523 NSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574
>AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
termination factor family protein | chr2:9270886-9273307
FORWARD LENGTH=641
Length = 641
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 16/248 (6%)
Query: 90 FEEKVLYLESIGIDS---FSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGM 145
E+K+ YL+ G+ + L+ P L+ S+ + K V+Y + +RI+ +
Sbjct: 352 MEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVV 411
Query: 146 CPEILTTKVSD-IIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFL--- 201
P + + I P FL E+ + I ++ + P L+ S+ ++RP + FL
Sbjct: 412 KPILYCIDLEKTIAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470
Query: 202 -----QSIGIEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSI 256
+ IG + ++ LL CS+ K P + Y+ ++G M FP L ++
Sbjct: 471 AGVTQKDIG-KVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV 529
Query: 257 KNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTS 316
+NL PKY Y M R L++L EFP++FS+SLE RI PRH VE V F L +L +
Sbjct: 530 -DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACT 588
Query: 317 EVTFRNRL 324
+ F R+
Sbjct: 589 DEEFERRV 596
>AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903904 FORWARD LENGTH=378
Length = 378
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 126 VEYITSMDFSAIEFQRIVGMCPEILTTKV-SDIIPVFTFLHREVHVKGSDIKRVINRRPR 184
+ + ++ + +++ P +++ + + + + +FL + I +V+ + P
Sbjct: 118 LAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPF 177
Query: 185 LIVCSVNNRLRPTLYFLQSI------GIEEVSKHTDLLSCSVEDKFL-PRIDYFENIGFS 237
L+ SV+ RLRPT FL+S GI+ V + L C +K L P DY + GF
Sbjct: 178 LMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFG 237
Query: 238 RDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRH 297
+M +PQ+ S+KN+L+P+ + V MGR + E+ +P++F L+ +++ R
Sbjct: 238 DSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRF 297
Query: 298 K 298
K
Sbjct: 298 K 298
>AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903413 FORWARD LENGTH=333
Length = 333
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 175 IKRVINRRPRLIVCSVNNRLRPTLYFLQSI------GIEEVSKHTDLLSCSVEDKFL-PR 227
I +V+ + P L+ SV+ RLRPT FL+S GI+ V + L C +K L P
Sbjct: 168 IGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPN 227
Query: 228 IDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSF 287
DY + GF +M +PQ+ S+KN+L+P+ + V MGR + E+ +P++F
Sbjct: 228 YDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHH 287
Query: 288 SLENRIKPRHK 298
L+ +++ R K
Sbjct: 288 GLKKKVESRFK 298
>AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903784 FORWARD LENGTH=363
Length = 363
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 126 VEYITSMDFSAIEFQRIVGMCPEILTTKV-SDIIPVFTFLHREVHVKGSDIKRVINRRPR 184
+ + ++ + +++ P +++ + + + + +FL + I +V+ + P
Sbjct: 118 LAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPF 177
Query: 185 LIVCSVNNRLRPTLYFLQSI------GIEEVSKHTDLLSCSVEDKFL-PRIDYFENIGFS 237
L+ SV+ RLRPT FL+S GI+ V + L C +K L P DY + GF
Sbjct: 178 LMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFG 237
Query: 238 RDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRH 297
+M +PQ+ S+KN+L+P+ + V MGR + E+ +P++F L+ +++ R
Sbjct: 238 DSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRF 297
Query: 298 K 298
K
Sbjct: 298 K 298
>AT2G44020.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:18217737-18219260 REVERSE
LENGTH=507
Length = 507
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 11/242 (4%)
Query: 94 VLYLESIGI---DSFSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGMCPEI 149
V YL SIG+ D ++ +P L+ + IK V+Y+ S+ R++ I
Sbjct: 220 VAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYI 279
Query: 150 LTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYF------LQS 203
+ + + + VK + +I + P+++ V ++ YF +
Sbjct: 280 VGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDP 339
Query: 204 IGIEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPK 263
G V + + ++ + I++ F +D M R PQ+ C ++ ++
Sbjct: 340 EGFARVVEKMPQIVSLKQNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVEL-MKNS 398
Query: 264 YNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNR 323
Y ++ EMGR +KEL E+P+YF++SLE+RIKPR+++ G+ +L L S+ F R
Sbjct: 399 YYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEER 458
Query: 324 LD 325
L
Sbjct: 459 LQ 460
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 99/214 (46%), Gaps = 14/214 (6%)
Query: 96 YLESIGIDSFSL---IENHPMLITASLA-DIKSTVEYITSMDFSAIEFQRIVGMCPEILT 151
YLE IGI L ++N+P ++ AS+ ++ V+++ +D + ++ PE+L
Sbjct: 150 YLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKYPELLG 209
Query: 152 TKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE--- 208
K+ + + V DI ++ + P L+ V ++P + +L SIG+ +
Sbjct: 210 FKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIV 269
Query: 209 ---VSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYN 265
+ K + ++ ++E+ P +D + G ++ + ++PQ+ +K + +
Sbjct: 270 ARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAKMSTQQY 329
Query: 266 YFVVEMGRD----LKELKEFPQYFSFSLENRIKP 295
+F +++ D + +++ PQ S +KP
Sbjct: 330 FFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKP 363
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 200 FLQSIG--IEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIK 257
FLQ +G I++++++ +L CSV +P + Y E IG SR + +PQ+ S+
Sbjct: 118 FLQKLGLTIDDINEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVV 177
Query: 258 NNLEPKYNYFVVEMGRDLKE------LKEFPQYFSFSLENRIKPRHKQCVELGV 305
L P + G D+++ L ++P+ F LE + V +GV
Sbjct: 178 VELAPVVKFL---RGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGV 228
>AT4G02990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:1322158-1323783 FORWARD
LENGTH=541
Length = 541
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 49/292 (16%)
Query: 94 VLYLESIGI---DSFSLIENHPMLITASLADIKST-VEYITSMDFSAIEFQRIVGMCPEI 149
V YL+ + I D ++E +P ++ L ST V Y+ + + E I+ PEI
Sbjct: 219 VKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEI 278
Query: 150 LTTKVSDII-PVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE 208
L +V+ II P+ +L + + R+I +RP ++ +++ ++P + LQ + E
Sbjct: 279 LGMRVARIIKPLVEYLE-VLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRE 337
Query: 209 VSK-----------HTDL---------LSCSV----------------------EDKFLP 226
S DL L CS E L
Sbjct: 338 TSLPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLK 397
Query: 227 RIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFS 286
ID+ GFS D M PQ+ ++ ++ + YF EM R L++L +FP +F+
Sbjct: 398 HIDFLTKCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFT 456
Query: 287 FSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRLDLCVNSSTPLETSP 338
+ LE+ +KPRHK+ ++ G+ +L +L S+ F R+ +ET P
Sbjct: 457 YGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRMSYDTIDIEEVETDP 508
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 90 FEEKVLYLESIGIDSFSLIENHPMLITASLA-DIKSTVEYITSMDFSAIEFQRIVGMCPE 148
+E+V +L +G+ + I N+P+++ S+ ++ ++Y+ + F + P+
Sbjct: 147 MKERVEFLHKLGL-TIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQ 205
Query: 149 IL-TTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE 207
+L ++ V D+ PV +L + +K SD+ RV+ R P ++ + + ++ +L IG+
Sbjct: 206 VLHSSVVIDLAPVVKYLQ-GLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVA 264
Query: 208 E------VSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLE 261
++++ ++L V P ++Y E +G R A + + P + + + ++
Sbjct: 265 RREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVK 324
Query: 262 P 262
P
Sbjct: 325 P 325
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 194 LRPTLYFLQSIG--IEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQL 251
++ + FL +G IE+++ + +L CSV+ +P +DY +G + T RR+PQ+
Sbjct: 147 MKERVEFLHKLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQV 206
Query: 252 FCCSIKNNLEPKYNYFVVEMGRDLKE------LKEFPQYFSFSLENRIKPRHKQCVELGV 305
S+ +L P Y G D+K L+ +P+ F LE + V +GV
Sbjct: 207 LHSSVVIDLAPVVKYL---QGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGV 263
Query: 306 C 306
Sbjct: 264 A 264
>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
| chr5:21988544-21990183 FORWARD LENGTH=500
Length = 500
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 13/235 (5%)
Query: 101 GIDSFS---LIENHPMLITASLADIKSTVEYITSM-DFSAIEFQRIVGMCPEILTT-KVS 155
G D F+ ++ P +++ S+ + VE++ S ++ + +IV + P +++T K
Sbjct: 262 GEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKER 321
Query: 156 DIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDL 215
+ P FL +E + + +++ P ++ S NN L L FL IG + +K
Sbjct: 322 KLRPRIEFL-KECGFDSPGMFKFLSKAPLILALSENN-LSHKLGFLVKIGYKHRTKELAF 379
Query: 216 LSCSV----EDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEM 271
+V D I + + G S +D +M + PQ+ + +LE K Y + M
Sbjct: 380 AMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNY-TSLEEKLEYLIEYM 438
Query: 272 GRDLKELKEFPQYFSFSLENRIKPRHKQCVE-LGVCFTLPVLLKTSEVTFRNRLD 325
GR+++EL FP + + L++RIK R+++ ++ G +L LL S F D
Sbjct: 439 GREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFSKAAD 493
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/350 (19%), Positives = 136/350 (38%), Gaps = 64/350 (18%)
Query: 32 TRLCKPFHSRVPTSIHFHCARPSFFV-----RATVIKWRCPKQTLPPKDTVFKEKVIPP- 85
T LC H P S F + R + +RC + P + E +
Sbjct: 28 TSLCS--HGTFPASSTFRSQLQPLLISCLNHREPALTFRCSCLSSPIESGSQIESLFSLF 85
Query: 86 NDTGFEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGM 145
D GF E+ ++ ++ +P + + SL I + V + S+ + Q ++
Sbjct: 86 RDIGFIEE---------ETEMILAKNPDIKSTSLDKIGARVASLQSLKINGFPLQGLIAK 136
Query: 146 CPEILTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLR---------- 195
CP +LT++ D++ F E + ++R+++ I+ S N ++R
Sbjct: 137 CPNLLTSEEFDLVISFLVDELEGRLDPELVERLLSVVDTSILLSFNQKVRLLLLHGIPKE 196
Query: 196 -----------PTLYFLQSI--------------GIEEVSKHTDLLSCSVEDKFLPRIDY 230
L + +S+ GI +++ +L+ ++ + +PR+D+
Sbjct: 197 KISHVLNKVYLNKLLYQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVDF 256
Query: 231 FENIGFSRDDAT-SMFRRFPQLFCCSIK---NNLEPKYNYFVVEMGRDLKELKEFPQYFS 286
N+ D AT ++ RR P + S++ +E ++ + + K + FP S
Sbjct: 257 IRNLSGEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVIS 316
Query: 287 FSLENRIKPRHKQCVELG--------VCFTLPVLLKTSEVTFRNRLDLCV 328
S E +++PR + E G P++L SE ++L V
Sbjct: 317 TSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLV 366
>AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902239-22903612 FORWARD
LENGTH=457
Length = 457
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 218 CSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKE 277
CS E K + I+ F +GFSRD+ M +R+PQ + + ++ K + V M L+
Sbjct: 322 CSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCIDYTAE-TVKKKTEFIVKNMNWPLEA 380
Query: 278 LKEFPQYFSFSLENRIKPR 296
L PQ F +SLE R PR
Sbjct: 381 LVSIPQVFGYSLEKRTVPR 399
>AT1G62120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22960326-22961639 REVERSE
LENGTH=437
Length = 437
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 221 EDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNL-EPKYNYFVVEMGRDLKELK 279
E K ++ F +GFSRD+ M +RFPQ C L + K + V EM LK +
Sbjct: 295 EKKIENSVETFLGLGFSRDEFLMMVKRFPQ--CIGYSTELMKTKTEFLVTEMNWPLKAVA 352
Query: 280 EFPQYFSFSLENRIKPR 296
PQ +SLE R PR
Sbjct: 353 SIPQVLGYSLEKRTVPR 369
>AT3G46950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:17289452-17290804 FORWARD
LENGTH=450
Length = 450
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 219 SVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNN--LEPKYNYFVVEMGRDLK 276
S E K L I+ F +GFSRDD M +R+P CC+ + L K+ V M L+
Sbjct: 318 SSEQKILDSIEMFLGLGFSRDDFKMMVKRYP---CCTAYSGETLRKKFEVLVKMMNWPLE 374
Query: 277 ELKEFPQYFSFSLENRIKPR 296
+ P +SLE RI PR
Sbjct: 375 AVVMIPTVLGYSLEKRIVPR 394
>AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22958094-22959482 REVERSE
LENGTH=462
Length = 462
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 221 EDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKE 280
E K L I+ F +GFSRD+ +M +RFPQ S + ++ K + V +M LK++
Sbjct: 326 EQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAE-TVKKKIEFVVKKMNWPLKDVVS 384
Query: 281 FPQYFSFSLENRIKPR 296
P ++LE R PR
Sbjct: 385 NPTVLGYNLEKRTVPR 400
>AT1G61970.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 221 EDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKE 280
E K L I+ F +GFSRD+ M + FP S + ++ K + V +M LK +
Sbjct: 289 EKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTE-TVKKKTEFLVKKMNWPLKAVVS 347
Query: 281 FPQYFSFSLENRIKPR 296
P F +SLE RI PR
Sbjct: 348 NPAVFGYSLEKRIVPR 363
>AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 221 EDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKE 280
E K L I+ F +GFSRD+ M + FP S + ++ K + V +M LK +
Sbjct: 289 EKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTE-TVKKKTEFLVKKMNWPLKAVVS 347
Query: 281 FPQYFSFSLENRIKPR 296
P F +SLE RI PR
Sbjct: 348 NPAVFGYSLEKRIVPR 363
>AT1G74120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:27871923-27873260 REVERSE
LENGTH=445
Length = 445
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 111/280 (39%), Gaps = 22/280 (7%)
Query: 63 KWRCPKQTLPPKDTVFKEKV---------IPPNDTGFEEKVLYLESIGI-DSF--SLIEN 110
KWR P V + I F E V L+S+G DS ++ +
Sbjct: 111 KWRVPLSNCGKHGVVSSSAIKSVLEHSSRIGIGPDKFNECVRVLKSLGFCDSTVSRILSS 170
Query: 111 HPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLHREVHV 170
P ++ + +I+ +E++ + + +R + PE+L + ++
Sbjct: 171 FPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGIGTETRLKPLLDEFMKMGF 230
Query: 171 KGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDLLSCSVEDKF--LPRI 228
D+K+ I R PR++ + R L + ++ EV + + + + F R+
Sbjct: 231 SKDDVKKEIAREPRVLGLELGELPR-CLELINTLKCREVIRVSIISEGAFRAGFEVKLRV 289
Query: 229 DYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFS 288
D G R DA + + P++ I++ +E K + MG + L + P+Y +
Sbjct: 290 DCLCKYGLIRRDAFKVVWKEPRVILYEIED-IEKKIEFLTNRMGFHINCLADVPEYLGVN 348
Query: 289 LENRIKPRH------KQCVELGVCFTLPVLLKTSEVTFRN 322
L+ +I PR+ K LG L L+K S F N
Sbjct: 349 LQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYN 388