Miyakogusa Predicted Gene

Lj3g3v0950950.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950950.2 Non Chatacterized Hit- tr|B4FL76|B4FL76_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,46.81,0.0000000000009,seg,NULL; NUFIP1,Nuclear fragile X mental
retardation-interacting protein 1, conserved domain,CUFF.41829.2
         (554 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18440.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   182   5e-46
AT5G18440.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear fr...   182   5e-46

>AT5G18440.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; EXPRESSED IN:
           22 plant structures; EXPRESSED DURING: 13 growth stages;
           CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental
           retardation-interacting protein 1, conserved region
           (InterPro:IPR019496); Has 1333 Blast hits to 1211
           proteins in 205 species: Archae - 0; Bacteria - 137;
           Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6;
           Other Eukaryotes - 619 (source: NCBI BLink). |
           chr5:6113092-6115748 FORWARD LENGTH=470
          Length = 470

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 40/381 (10%)

Query: 136 PMFGFPNQVPVSQPMFPQNSIFS-ANPQ-MGHVPGNQVRPQIDPNEKKLVPPNVNTNAFV 193
           P F  PN +    P    N  F+ AN   MGH   N  +P ++P+            AF 
Sbjct: 87  PQFAMPNHINQLLPNLLGNLQFAVANSNLMGHSLPNFFQPSLEPH------------AFS 134

Query: 194 SSPFPSQQLQGNGSAPVNPHLAQPHHTNNSQPSAFMNSNSQEKPNSNIKANVPNSNWKGP 253
           S P    QL    S P  P +  PH  + S P  F    S+ +P      +V N+N  GP
Sbjct: 135 SRP----QLNSFNSLPY-PPVPNPHQNHQSGPPGF----SEPRPQG---QSVDNTNGSGP 182

Query: 254 PSKNFKNKPSRXXX----XXXXXKSKFVNINNGKRGNGFPEXXXXXXXXXXXXXXLNSEE 309
              +F+NK  +            + +    +NGKR +GF +              L+  +
Sbjct: 183 NGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHRGKGNNNKMKTGLDGSD 242

Query: 310 ---LKQEAKRS--VTYSEQEIQQWREARRKNHPFKDNIQKSEDQKDTKVI---DRGVLQK 361
              + +E KRS  + Y+ +E+QQWREARRKN+P K  ++K   +  +  I   +  + ++
Sbjct: 243 TGNIAKEKKRSYALMYTPREVQQWREARRKNYPTKFLVEKKVKKNVSASILDEEAKMRRQ 302

Query: 362 ELKEVLAKQAELGIEVAEIPSHYLKNSENQGFQTEGKNSFTDKRKFQNKFNKKS-DRRGR 420
           +L+EVLAKQAELG+EVAE+PSHYL N++ Q     G N+    R   N+ NK+  DR+ +
Sbjct: 303 QLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNNGRKGRFQNNRRNKRRHDRKDK 362

Query: 421 F-GKRQKFSHNDISEKPALNKKKPTLLEKLLSADIKRDKSHLLQVFRFMVMNSFFKDSPD 479
           F  K+ +      S+  ++  +KPTLLEKLLSADIKRDKS LLQVFRFMVMNS  K+ P+
Sbjct: 363 FDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPE 422

Query: 480 KPLIYPSVKVKEIGSEGGCEE 500
           +PL  P + VKE G E   E+
Sbjct: 423 QPLKLPLITVKETGCEDAMED 443


>AT5G18440.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear
           fragile X mental retardation-interacting protein 1,
           conserved region (InterPro:IPR019496); Has 1333 Blast
           hits to 1211 proteins in 205 species: Archae - 0;
           Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70;
           Viruses - 6; Other Eukaryotes - 619 (source: NCBI
           BLink). | chr5:6113092-6115748 FORWARD LENGTH=470
          Length = 470

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 40/381 (10%)

Query: 136 PMFGFPNQVPVSQPMFPQNSIFS-ANPQ-MGHVPGNQVRPQIDPNEKKLVPPNVNTNAFV 193
           P F  PN +    P    N  F+ AN   MGH   N  +P ++P+            AF 
Sbjct: 87  PQFAMPNHINQLLPNLLGNLQFAVANSNLMGHSLPNFFQPSLEPH------------AFS 134

Query: 194 SSPFPSQQLQGNGSAPVNPHLAQPHHTNNSQPSAFMNSNSQEKPNSNIKANVPNSNWKGP 253
           S P    QL    S P  P +  PH  + S P  F    S+ +P      +V N+N  GP
Sbjct: 135 SRP----QLNSFNSLPY-PPVPNPHQNHQSGPPGF----SEPRPQG---QSVDNTNGSGP 182

Query: 254 PSKNFKNKPSRXXX----XXXXXKSKFVNINNGKRGNGFPEXXXXXXXXXXXXXXLNSEE 309
              +F+NK  +            + +    +NGKR +GF +              L+  +
Sbjct: 183 NGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHRGKGNNNKMKTGLDGSD 242

Query: 310 ---LKQEAKRS--VTYSEQEIQQWREARRKNHPFKDNIQKSEDQKDTKVI---DRGVLQK 361
              + +E KRS  + Y+ +E+QQWREARRKN+P K  ++K   +  +  I   +  + ++
Sbjct: 243 TGNIAKEKKRSYALMYTPREVQQWREARRKNYPTKFLVEKKVKKNVSASILDEEAKMRRQ 302

Query: 362 ELKEVLAKQAELGIEVAEIPSHYLKNSENQGFQTEGKNSFTDKRKFQNKFNKKS-DRRGR 420
           +L+EVLAKQAELG+EVAE+PSHYL N++ Q     G N+    R   N+ NK+  DR+ +
Sbjct: 303 QLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNNGRKGRFQNNRRNKRRHDRKDK 362

Query: 421 F-GKRQKFSHNDISEKPALNKKKPTLLEKLLSADIKRDKSHLLQVFRFMVMNSFFKDSPD 479
           F  K+ +      S+  ++  +KPTLLEKLLSADIKRDKS LLQVFRFMVMNS  K+ P+
Sbjct: 363 FDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPE 422

Query: 480 KPLIYPSVKVKEIGSEGGCEE 500
           +PL  P + VKE G E   E+
Sbjct: 423 QPLKLPLITVKETGCEDAMED 443