Miyakogusa Predicted Gene

Lj3g3v0950580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950580.1 Non Chatacterized Hit- tr|G7JC10|G7JC10_MEDTR
Putative ribosome biogenesis GTPase RsgA OS=Medicago
t,88.01,0,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Nucleic acid-binding
proteins,N,NODE_48441_length_1250_cov_77.383202.path1.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MCM...   537   e-153
AT1G67460.1 | Symbols:  | Minichromosome maintenance (MCM2/3/5) ...   229   3e-60

>AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance
           (MCM2/3/5) family protein | chr1:25263905-25265551
           REVERSE LENGTH=433
          Length = 433

 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/368 (71%), Positives = 298/368 (80%), Gaps = 7/368 (1%)

Query: 9   GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDHL 68
           GVELLCVVRA+LKKI+RRV+VGDKVLVGSIDWVDRRGMIENVF R SEILDPPVANVDHL
Sbjct: 67  GVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIENVFHRRSEILDPPVANVDHL 126

Query: 69  LVLFSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNETVASWKARVRDWGYDPI 128
           LVLFSL  PK EPFTLTRFLVEAEST IPLTLALNK EL+  E + +WK R+R W Y+P+
Sbjct: 127 LVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELISEEELETWKIRLRGWNYEPL 186

Query: 129 LCSVESVHNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRTNPRVCETAEGENWFEPILG 188
            CSV +   LD +AF LRDQT+VIVGPSGVGKSSLIN LR+N       E ENWFEP+LG
Sbjct: 187 FCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRSN-HGGGVVEDENWFEPMLG 245

Query: 189 SKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKVTKQSLAETF 248
           +KWF+DQRV EVS+RSGRGKHTTR+VSLLP+S GGYLADTPGFNQPSL+KVTK SLA  F
Sbjct: 246 NKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCF 305

Query: 249 PEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGT 308
           PEIR M+   ES KC F +CLH+GEPGC+VKGDWERY +Y QLLDEIRIREEFQLRTFGT
Sbjct: 306 PEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGT 362

Query: 309 KRESDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSF---LXXXXXXXXXXXXXXXPV 365
           KRE DVR K+GDMGV+ AEPRL PKKHRR+SRK+  Q+    L               P+
Sbjct: 363 KREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMISELDEFEDEDSDLYIENDPI 422

Query: 366 LRALRNEN 373
           ++A+ NEN
Sbjct: 423 VQAIENEN 430


>AT1G67460.1 | Symbols:  | Minichromosome maintenance (MCM2/3/5)
           family protein | chr1:25270272-25271617 REVERSE
           LENGTH=299
          Length = 299

 Score =  229 bits (583), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 131/162 (80%)

Query: 9   GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDHL 68
           GVELLCVVR LLKKI R V+VGDKVLV  +DWVDRR  I NVF R SE+LDPPVANVDHL
Sbjct: 110 GVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHL 169

Query: 69  LVLFSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNETVASWKARVRDWGYDPI 128
           ++LFSL  PK +PFTLTRFLVEAES GI +T+ALNK ELV  E V SWK R+R W Y+P+
Sbjct: 170 VILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPL 229

Query: 129 LCSVESVHNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRTN 170
            CSV +   +D +AF LR+QT+VIVGPSGVGKSSLIN LR++
Sbjct: 230 FCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSS 271