Miyakogusa Predicted Gene

Lj3g3v0950230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950230.1 Non Chatacterized Hit- tr|C0HIA6|C0HIA6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,62.5,5e-16,SLT,Lytic
transglycosylase-like, catalytic; Lysozyme-like,Lysozyme-like domain;
no description,NULL,CUFF.41785.1
         (422 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   520   e-147

>AT1G16290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast, vacuole; EXPRESSED IN: 19 plant structures;
           EXPRESSED DURING: 11 growth stages; CONTAINS InterPro
           DOMAIN/s: Lytic transglycosylase-like, catalytic
           (InterPro:IPR008258); Has 171 Blast hits to 155 proteins
           in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0;
           Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes -
           62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE
           LENGTH=419
          Length = 419

 Score =  520 bits (1338), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/422 (58%), Positives = 314/422 (74%), Gaps = 12/422 (2%)

Query: 1   MAINFSYWDDCVDPEDLEAMWNVPEVRTEWLKAGEARCQKVHLSRDPDGQPYLTQTEMRA 60
           MA +F++W+DCV+PEDLE MW  P V  EW+  GE + QKVHLSRDPDGQPYLTQTEMRA
Sbjct: 1   MANSFTFWNDCVEPEDLEEMWMDPAVSAEWIDVGETKGQKVHLSRDPDGQPYLTQTEMRA 60

Query: 61  VSKIVIGRHFDSEIDPGMICAIAELESDRQLLVMRSGHKSKEPTVGLMQILPKTAEWLMS 120
           VS I + RHFDS +D  MICAIAELESDR+ L+MR   K+KE  +G++Q+  KTA WL  
Sbjct: 61  VSDITVRRHFDSILDSEMICAIAELESDRKPLIMRYSKKTKETGLGILQVFEKTAAWLAG 120

Query: 121 ELGYRSYSAEGNIQFLCKPFISVYFGAAYIKWLSNFDNKKRSEEFIVRAYKGGTKKATHK 180
             GY++Y+ + N   L KPFI+VYFGAAY+KWL+++ N +RSEEF+VRAY GGTKKATHK
Sbjct: 121 GQGYQAYNVDDNPDLLHKPFINVYFGAAYLKWLTDYQNNQRSEEFVVRAYNGGTKKATHK 180

Query: 181 STLSFWKSYLSIKGSFPSRKSVDDGPPLSNASAPVHCPAGSPIPSLENSKDASVDTYWDS 240
           STL +WK YL++K S PSRK  D GP     + P    + +              TYWDS
Sbjct: 181 STLPYWKRYLAVKESLPSRKHGDAGPSSFRPTNPASPGSNTDF------------TYWDS 228

Query: 241 RASPEDMEAMWNHPEIHKVWSKSKQKQGKVRFTHDEKKRPYLSRVEIKAVADIVLFKYLN 300
           RASPEDME MWN  EI K W+KSK+++GKVRF+ D +KRPYLSR E+KAVA+I++ KY +
Sbjct: 229 RASPEDMEDMWNQSEICKEWTKSKEERGKVRFSQDGEKRPYLSRGELKAVAEIIVSKYFS 288

Query: 301 TLKIKSRVLCAIAEVASTRFVDGVEGRPGIMGIDYSTAFWLYLELGHRAYKLESADDLNS 360
           T  I+  ++CAIA+    RFV+G++   GI+G+DYSTA WLY ELG+RAY+++SADDL  
Sbjct: 289 TKGIRVPLVCAIADTVCMRFVNGIKKHVGILGVDYSTASWLYSELGYRAYRVDSADDLTK 348

Query: 361 PFVSMYFGAAYVAWLSEYEGRERAPQFFVQAYFVGPKNVNPQDVSPLWLKFEESLSKYEE 420
           PF+SMYFG AY+ WLSEYEG +R+ QF VQAY  GP +V+ ++  PLWLKFE++LS YEE
Sbjct: 349 PFISMYFGVAYLVWLSEYEGSQRSNQFIVQAYMKGPDHVDLEESCPLWLKFEQALSYYEE 408

Query: 421 TK 422
           +K
Sbjct: 409 SK 410