Miyakogusa Predicted Gene
- Lj3g3v0938140.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0938140.1 Non Chatacterized Hit- tr|I1KTV2|I1KTV2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25709 PE,86,0,seg,NULL;
DNA-glycosylase,DNA glycosylase; Adenine_glyco,Methyladenine
glycosylase; no description,D,CUFF.41779.1
(399 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein | ... 402 e-112
AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein | ... 368 e-102
AT5G57970.2 | Symbols: | DNA glycosylase superfamily protein | ... 236 3e-62
AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein | ... 236 3e-62
AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein | ... 232 3e-61
AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein | ... 232 4e-61
AT1G13635.2 | Symbols: | DNA glycosylase superfamily protein | ... 230 2e-60
AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein | ... 230 2e-60
AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein | ... 223 2e-58
>AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein |
chr3:4040572-4041828 REVERSE LENGTH=312
Length = 312
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/279 (71%), Positives = 222/279 (79%), Gaps = 18/279 (6%)
Query: 114 TLERKKSKSFKEGSCGIGPVEASFSYSSSLITDSPGSIAAVRREQVALQQAQRKLKIAHY 173
+LERKKSKSFKEG SYSS LIT++PGSIAAVRREQVA QQA RKLKIAHY
Sbjct: 46 SLERKKSKSFKEGD----------SYSSWLITEAPGSIAAVRREQVAAQQALRKLKIAHY 95
Query: 174 GRSKSA---KFERVVPFDPSSTLASKTNEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDD 230
GRSKS +VVP L N +RCSF+T SDPIY+AYHDEEWGVPVHDD
Sbjct: 96 GRSKSTINFTSSKVVPL-----LNPNPNPHPQRCSFLTPTSDPIYVAYHDEEWGVPVHDD 150
Query: 231 KVLFELLVLSGAQVGSDWTSTLKKRQDFRTAFSEFDAETVANLTDKQMMSISSEYGIEIS 290
K LFELL LSGAQVGSDWTSTL+KR D+R AF EF+AE VA LT+K+M +IS EY IE+S
Sbjct: 151 KTLFELLTLSGAQVGSDWTSTLRKRHDYRKAFMEFEAEVVAKLTEKEMNAISIEYKIEMS 210
Query: 291 KIRGVVDNANQILKVMKDFGSFDKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMV 350
K+RGVV+NA +I+++ K F S +KY+WGFVNHKPIST YK GHKIPVKTSKSESISKDMV
Sbjct: 211 KVRGVVENAKKIVEIKKAFVSLEKYLWGFVNHKPISTNYKLGHKIPVKTSKSESISKDMV 270
Query: 351 RRGFRFVGPTVVHSFMQAAGLTNDHLITCHRHLQCTLAA 389
RRGFRFVGPTVVHSFMQAAGLTNDHLITC RH CTL A
Sbjct: 271 RRGFRFVGPTVVHSFMQAAGLTNDHLITCCRHAPCTLLA 309
>AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein |
chr5:18024461-18025893 REVERSE LENGTH=353
Length = 353
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/393 (50%), Positives = 253/393 (64%), Gaps = 46/393 (11%)
Query: 1 MCSSKAKVTVGIEATTTTIIHPVARINGRPVLQPTCNRVPSLERRNSIKKVTXXXXXXXX 60
MCSSK K +++INGRPVLQP N+VP+L+RRNS+KK
Sbjct: 1 MCSSKLK---------NLTQENISQINGRPVLQPKSNQVPTLDRRNSLKKSPPKPLNPIA 51
Query: 61 XXXXXNK--ALLTXXXXXXXXXXXXXAIKRASDNNGLNSSS--EKIVVTPRNSIKTPTLE 116
+ +L++ A S L SSS K V++P NS
Sbjct: 52 SKIPSPRPISLISPPLSPNTKSLRKPA---GSCKELLRSSSTKSKPVISPENS------- 101
Query: 117 RKKSKSFKEGSCGIGPVEASFSYSSSLITDSPGSIAAVRREQVALQQAQRKLKIAHYGRS 176
+KE + P+ ++ PGSIAA RRE+VA++Q +RK KI+HYGR
Sbjct: 102 ---DGGYKE----VMPM--------VIVQKQPGSIAAARREEVAMKQEERKKKISHYGRI 146
Query: 177 KSAKFERVVPFDPSSTLASKTNEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFEL 236
KS K + + +E++KRCSFIT +SDPIY+AYHD+EWGVPVHDD +LFEL
Sbjct: 147 KSVK--------SNEKNLNVEHEKKKRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFEL 198
Query: 237 LVLSGAQVGSDWTSTLKKRQDFRTAFSEFDAETVANLTDKQMMSISSEYGIEISKIRGVV 296
LVL+GAQVGSDWTS LK+R FR AFS F+AE VA+ +K++ SI ++YGI +S++ VV
Sbjct: 199 LVLTGAQVGSDWTSVLKRRNTFREAFSGFEAELVADFNEKKIQSIVNDYGINLSQVLAVV 258
Query: 297 DNANQILKVMKDFGSFDKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRF 356
DNA QILKV +D GSF+KYIWGF+ HKP++T+Y KIPVKTSKSE+ISKDMVRRGFRF
Sbjct: 259 DNAKQILKVKRDLGSFNKYIWGFMKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRF 318
Query: 357 VGPTVVHSFMQAAGLTNDHLITCHRHLQCTLAA 389
VGPTV+HS MQAAGLTNDHLITC RHL+CT A
Sbjct: 319 VGPTVIHSLMQAAGLTNDHLITCPRHLECTAMA 351
>AT5G57970.2 | Symbols: | DNA glycosylase superfamily protein |
chr5:23467316-23468910 FORWARD LENGTH=347
Length = 347
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 141/192 (73%), Gaps = 2/192 (1%)
Query: 198 NEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQD 257
+E +KRC+++T NSDP YI +HDEEWGVPVHDDK LFELLVLSGA W + L KRQ
Sbjct: 150 SETKKRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQA 209
Query: 258 FRTAFSEFDAETVANLTDKQMMSISSEYGIEIS--KIRGVVDNANQILKVMKDFGSFDKY 315
FR F++FD + + +K+++ S +S K+R V++NA QILKV++++GSFDKY
Sbjct: 210 FREVFADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKY 269
Query: 316 IWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDH 375
IW FV +K I +++++ ++P KT K+E ISKD+VRRGFR VGPTVV+SFMQAAG+TNDH
Sbjct: 270 IWSFVKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDH 329
Query: 376 LITCHRHLQCTL 387
L +C R C
Sbjct: 330 LTSCFRFHHCIF 341
>AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein |
chr5:23467316-23468910 FORWARD LENGTH=347
Length = 347
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 141/192 (73%), Gaps = 2/192 (1%)
Query: 198 NEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQD 257
+E +KRC+++T NSDP YI +HDEEWGVPVHDDK LFELLVLSGA W + L KRQ
Sbjct: 150 SETKKRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQA 209
Query: 258 FRTAFSEFDAETVANLTDKQMMSISSEYGIEIS--KIRGVVDNANQILKVMKDFGSFDKY 315
FR F++FD + + +K+++ S +S K+R V++NA QILKV++++GSFDKY
Sbjct: 210 FREVFADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKY 269
Query: 316 IWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDH 375
IW FV +K I +++++ ++P KT K+E ISKD+VRRGFR VGPTVV+SFMQAAG+TNDH
Sbjct: 270 IWSFVKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDH 329
Query: 376 LITCHRHLQCTL 387
L +C R C
Sbjct: 330 LTSCFRFHHCIF 341
>AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:30385607-30387272 REVERSE LENGTH=327
Length = 327
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
Query: 202 KRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQDFRTA 261
KRC++IT SD YIA+HDEEWGVPVHDDK LFELL LSGA W L KRQ FR
Sbjct: 134 KRCAWITPKSDQCYIAFHDEEWGVPVHDDKRLFELLSLSGALAELSWKDILSKRQLFREV 193
Query: 262 FSEFDAETVANLTDKQMMS--ISSEYGIEISKIRGVVDNANQILKVMKDFGSFDKYIWGF 319
F +FD ++ LT+K++ S I++ + K+R +++NANQ+ K++ FGSFDKYIW F
Sbjct: 194 FMDFDPIAISELTNKKITSPEIAATTLLSEQKLRSILENANQVCKIIGAFGSFDKYIWNF 253
Query: 320 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 379
VN KP +Q+++ ++PVKTSK+E ISKD+VRRGFR V PTV++SFMQ AGLTNDHL C
Sbjct: 254 VNQKPTQSQFRYPRQVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLTCC 313
Query: 380 HRHLQC 385
RH C
Sbjct: 314 FRHHDC 319
>AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:28187647-28189612 REVERSE LENGTH=329
Length = 329
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
Query: 202 KRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQDFRTA 261
KRC +IT NSDPIY+ +HDEEWGVPV DDK LFELLV S A W S L++R DFR
Sbjct: 119 KRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDFRKL 178
Query: 262 FSEFDAETVANLTDKQMMSISSEYGIEIS--KIRGVVDNANQILKVMKDFGSFDKYIWGF 319
F EFD +A T+K++MS+ + +S K+R +V+NA +LKV ++FGSF Y W F
Sbjct: 179 FEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYCWRF 238
Query: 320 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 379
VNHKP+ Y++G ++PVK+ K+E ISKDM++RGFR VGPTV++SF+QA+G+ NDHL C
Sbjct: 239 VNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHLTAC 298
Query: 380 HRHLQCTL 387
R+ +C +
Sbjct: 299 FRYQECNV 306
>AT1G13635.2 | Symbols: | DNA glycosylase superfamily protein |
chr1:4674248-4675784 FORWARD LENGTH=311
Length = 311
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 146/198 (73%), Gaps = 3/198 (1%)
Query: 197 TNEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQ 256
+++E KRC++IT SD +Y+ +HD++WGVPV+DD +LFE L +SG + +WT LK+++
Sbjct: 110 SSDEPKRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKE 169
Query: 257 DFRTAFSEFDAETVANLTDKQMMSISSEYGIEI--SKIRGVVDNANQILKVMKDFGSFDK 314
FR AF EFD VA + +K++ I+S I + S++R +VDNA I KV+ +FGSF
Sbjct: 170 HFREAFCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSS 229
Query: 315 YIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTND 374
++WGF+++KPI ++K+ +P+++ K+E ISKDM++RGFRFVGP +VHSFMQAAGLT D
Sbjct: 230 FVWGFMDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTID 289
Query: 375 HLITCHRHLQC-TLAARP 391
HL+ C RH C +LA RP
Sbjct: 290 HLVDCFRHGDCVSLAERP 307
>AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:4674248-4675784 FORWARD LENGTH=311
Length = 311
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 146/198 (73%), Gaps = 3/198 (1%)
Query: 197 TNEEEKRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQ 256
+++E KRC++IT SD +Y+ +HD++WGVPV+DD +LFE L +SG + +WT LK+++
Sbjct: 110 SSDEPKRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKE 169
Query: 257 DFRTAFSEFDAETVANLTDKQMMSISSEYGIEI--SKIRGVVDNANQILKVMKDFGSFDK 314
FR AF EFD VA + +K++ I+S I + S++R +VDNA I KV+ +FGSF
Sbjct: 170 HFREAFCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSS 229
Query: 315 YIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTND 374
++WGF+++KPI ++K+ +P+++ K+E ISKDM++RGFRFVGP +VHSFMQAAGLT D
Sbjct: 230 FVWGFMDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTID 289
Query: 375 HLITCHRHLQC-TLAARP 391
HL+ C RH C +LA RP
Sbjct: 290 HLVDCFRHGDCVSLAERP 307
>AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:5486544-5488494 REVERSE LENGTH=352
Length = 352
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 2/190 (1%)
Query: 202 KRCSFITVNSDPIYIAYHDEEWGVPVHDDKVLFELLVLSGAQVGSDWTSTLKKRQDFRTA 261
KRC++IT +DP Y+A+HDEEWGVPVHDDK LFELL LSGA WT L +R R
Sbjct: 145 KRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILREV 204
Query: 262 FSEFDAETVANLTDKQMMSISSEYGIEIS--KIRGVVDNANQILKVMKDFGSFDKYIWGF 319
F +FD VA L DK++ + + +S KIR ++DN+ + K++ + GS KY+W F
Sbjct: 205 FMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYMWNF 264
Query: 320 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 379
VN+KP +Q+++ ++PVKTSK+E ISKD+VRRGFR V PTV++SFMQAAGLTNDHLI C
Sbjct: 265 VNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLIGC 324
Query: 380 HRHLQCTLAA 389
R+ C + A
Sbjct: 325 FRYQDCCVDA 334