Miyakogusa Predicted Gene

Lj3g3v0937820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0937820.1 tr|I1KTT3|I1KTT3_SOYBN Isocitrate dehydrogenase
[NADP] OS=Glycine max GN=Gma.40048 PE=3 SV=1,91.83,0,NADP-SPECIFIC
ISOCITRATE DEHYDROGENASE,Isocitrate dehydrogenase NADP-dependent;
Iso_dh,Isopropylmala,CUFF.41672.1
         (416 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:20...   726   0.0  
AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitr...   719   0.0  
AT5G14590.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogena...   669   0.0  

>AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase |
           chr1:20283520-20286506 FORWARD LENGTH=416
          Length = 416

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/410 (82%), Positives = 375/410 (91%), Gaps = 1/410 (0%)

Query: 1   MEFRKIKVDNPIVEMDGDEMTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTI 60
           MEF KIKV NP+VEMDGDEMTRVIWK IKDKLIFPFLELDIKYFDLGLP+RD T+D+VTI
Sbjct: 1   MEFEKIKVINPVVEMDGDEMTRVIWKFIKDKLIFPFLELDIKYFDLGLPNRDFTDDKVTI 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           E+AEATLKYNVAIKCATITPDEARV+EF LK+MW+SPNGTIRNILNGTVFREPIIC+N+P
Sbjct: 61  ETAEATLKYNVAIKCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVFREPIICRNIP 120

Query: 121 RLVSGWTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGGV 180
           RLV GWTKPICIGRHAFGDQYRATD I+  PGKLKLVFEPSG  +  + EV+NF G GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDLIVNEPGKLKLVFEPSGSSQKTEFEVFNFTG-GGV 179

Query: 181 ALSMYNTDESIQAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQK 240
           AL+MYNTDESI+AFAE+SM  AYQKKWPLYLSTKNTILK YDGRFKDIFQEV++  W  K
Sbjct: 180 ALAMYNTDESIRAFAESSMYTAYQKKWPLYLSTKNTILKIYDGRFKDIFQEVYEANWRSK 239

Query: 241 FKAAGIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMSSILVCP 300
           ++AAGIWYEHRLIDDMVAY++KS+GGYVWACKNYDGDVQSDF+AQG+GSLG+M+S+LVCP
Sbjct: 240 YEAAGIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQSDFLAQGYGSLGMMTSVLVCP 299

Query: 301 DGKTIESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTEK 360
           DGKTIE+EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD NA L  +TEK
Sbjct: 300 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDSNAALLSYTEK 359

Query: 361 LETACIGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRL 410
           LE AC+GTVE GKMTKDLALL+HG KV R QY NTEEFIDAVA +L+ RL
Sbjct: 360 LEAACMGTVESGKMTKDLALLIHGAKVRRDQYVNTEEFIDAVAWELKRRL 409


>AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate
           dehydrogenase | chr1:24539088-24541861 FORWARD
           LENGTH=410
          Length = 410

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/411 (81%), Positives = 371/411 (90%), Gaps = 2/411 (0%)

Query: 1   MEFRKIKVDNPIVEMDGDEMTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTI 60
           M F KIKV NPIVEMDGDEMTRVIWK IKDKLI PF+ELDIKYFDLGLPHRDAT+D+VTI
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEAT KYNVAIKCATITPDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP
Sbjct: 61  ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLVSGWTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGGV 180
           +LV GWTKPICIGRHAFGDQYRATD +I+GPGKL + FE  G +   + EV+ F G GGV
Sbjct: 121 KLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTFE--GKDGKTETEVFTFTGEGGV 178

Query: 181 ALSMYNTDESIQAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQK 240
           A++MYNTDESI+AFA+ASMN AY+KKWPLYLSTKNTILKKYDGRFKDIFQEV++  W  K
Sbjct: 179 AMAMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSK 238

Query: 241 FKAAGIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMSSILVCP 300
           + AAGIWYEHRLIDDMVAY+LKS+GGYVWACKNYDGDVQSDF+AQGFGSLGLM+S+LVCP
Sbjct: 239 YDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 298

Query: 301 DGKTIESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTEK 360
           DGKTIE+EAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD NA+L DFTEK
Sbjct: 299 DGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEK 358

Query: 361 LETACIGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRLS 411
           LE AC+GTVE GKMTKDLAL++HG K+ R  Y NTEEFIDAVA +L+ RL+
Sbjct: 359 LEAACVGTVESGKMTKDLALIIHGSKLSRDTYLNTEEFIDAVAAELKERLN 409


>AT5G14590.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogenase
           family protein | chr5:4703533-4706627 REVERSE LENGTH=485
          Length = 485

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/406 (75%), Positives = 357/406 (87%), Gaps = 1/406 (0%)

Query: 5   KIKVDNPIVEMDGDEMTRVIWKLIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTIESAE 64
           +I+V NPIVEMDGDEMTRVIW +IK+KLI P+L+LDIKYFDLG+ +RDAT+D+VT+ESAE
Sbjct: 75  RIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESAE 134

Query: 65  ATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLVS 124
           A LKYNVAIKCATITPDE RVKEF LK MW+SPNGTIRNIL+GTVFREPI+C N+PRLV 
Sbjct: 135 AALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLVP 194

Query: 125 GWTKPICIGRHAFGDQYRATDTIIRGPGKLKLVFEPSGHEEIKDLEVYNFDGAGGVALSM 184
           GW KPICIGRHAFGDQYRATDT+I+GPGKLK+VF P       +L+VY+F G G VAL+M
Sbjct: 195 GWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPG-VALAM 253

Query: 185 YNTDESIQAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSQKFKAA 244
           YN DESI+AFAE+SM +A  KKWPLYLSTKNTILKKYDGRFKDIFQEV++  W QKF+  
Sbjct: 254 YNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEH 313

Query: 245 GIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFIAQGFGSLGLMSSILVCPDGKT 304
            IWYEHRLIDDMVAY++KS+GGYVWACKNYDGDVQSD +AQGFGSLGLM+S+L+  DGKT
Sbjct: 314 SIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADGKT 373

Query: 305 IESEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTEKLETA 364
           +ESEAAHGTVTRH+R+HQKG ETSTNSIASIFAW+RGL HRAKLD N +L DF +KLE++
Sbjct: 374 LESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEKLMDFVKKLESS 433

Query: 365 CIGTVELGKMTKDLALLVHGPKVYRSQYFNTEEFIDAVADQLRTRL 410
           C+ TVE GKMTKDLALL+HGPKV R  + NTEEFIDAVA +L+T+ 
Sbjct: 434 CVNTVETGKMTKDLALLIHGPKVSRDLFLNTEEFIDAVASKLKTQF 479