Miyakogusa Predicted Gene

Lj3g3v0931330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0931330.1 tr|A9TLA7|A9TLA7_PHYPA DNA polymerase
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60547
PE=,46.3,1e-18,Ribonuclease H-like,Ribonuclease H-like domain;
seg,NULL; DNA POLYMERASE ALPHA CATALYTIC SUBUNIT,NUL,CUFF.41631.1
         (448 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr...   217   1e-56

>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
           chr5:26776994-26785104 FORWARD LENGTH=1524
          Length = 1524

 Score =  217 bits (553), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 234/445 (52%), Gaps = 61/445 (13%)

Query: 2   ADDDGSRKRRPTRGPESTARSQALERLKA-RLGGGRRSDPAGPQIKLENPIYDTVPEDEY 60
            D+     RR +RG E+++R   LERLKA R GG R +   G  I+L+ PI+DTV ++EY
Sbjct: 3   GDNSTETGRRRSRGAEASSRKDTLERLKAIRQGGIRSASGGGYDIRLQKPIFDTVDDEEY 62

Query: 61  NALVAKRREQAQDFIVXXXX---XXXXXXXXXXXWSK------------AGYTLXXXXXX 105
           +ALV++RRE+A+ F+V                  WSK             G         
Sbjct: 63  DALVSRRREEARGFVVEDGEGGDLGYLDEGEEEDWSKPSGPESTDESDDGGRFSGRLKKK 122

Query: 106 XXXXXKAEKPKRKK-DPQIKRPXXXXXXXXXXXXMIGAQRLSSMFTSSNFKKNR--DEKA 162
                + ++P+ KK +P +K              + G  RLSSMFTSS+FKK +  D+  
Sbjct: 123 KKGKEQTQQPQVKKVNPALK----------AAATITGEGRLSSMFTSSSFKKVKETDKAQ 172

Query: 163 SESIVDDVIAEFAPDENDR---LRRRKAQPNPSAYSPGESLRVKPCTTNSIRASPVSGNF 219
            E I+D++IA+  PDE+DR    RR+     P      + L     +     + P    +
Sbjct: 173 YEGILDEIIAQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKESEPTPSTY 232

Query: 220 SIDGGTAKPVRANESNGSELGVELKFEEAAELNGNSENVQAQPETMQIDDFPSNEGLSED 279
                        E +   +  EL  EE  +    SE + +  ETM++     ++ + ED
Sbjct: 233 -------------EGDSVSMDNELMKEEDMK---ESEVIPS--ETMEL---LGSDIVKED 271

Query: 280 KVVKDIEMEEKPALK-KEVFTLNAKISREEDPTLSAATAGWQAAKRSTGGGGEINGAV-- 336
              K  + E K  L  KEVFTLNA I  +E  +  +ATAGW   K + G  G  NGA+  
Sbjct: 272 GSNKIRKTEVKSELGVKEVFTLNATIDMKEKDSALSATAGW---KEAMGKVGTENGALLG 328

Query: 337 -SKDGLSAEFNLEADGSLPFFILDAHEEYYGANMGTVYLFGKVKTGDLYQSCCVVVKNMQ 395
            S +G   EF+L+ADGSL FFILDA+EE +GA+MGT+YLFGKVK GD Y+SCCVVVKN+Q
Sbjct: 329 SSSEG-KTEFDLDADGSLRFFILDAYEEAFGASMGTIYLFGKVKMGDTYKSCCVVVKNIQ 387

Query: 396 RCVYAIPSRPLHYTDEIMNLEKDVQ 420
           RCVYAIP+  +  + E++ LE++V+
Sbjct: 388 RCVYAIPNDSIFPSHELIMLEQEVK 412