Miyakogusa Predicted Gene

Lj3g3v0930320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0930320.1 tr|G7K6L7|G7K6L7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g017060 PE=3 SV=1,85.52,0,DNA/RNA polymerases,NULL;
zf-DNA_Pol,Zinc finger, DNA-directed DNA polymerase, family B, alpha;
DNA_,CUFF.41632.1
         (359 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr...   498   e-141

>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
            chr5:26776994-26785104 FORWARD LENGTH=1524
          Length = 1524

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/359 (64%), Positives = 285/359 (79%), Gaps = 2/359 (0%)

Query: 1    MRNGQVPLEKYVITKTLTKDPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICY 60
            MRNGQV LEKYVITKTLTK P AYPD+K+QPHV VA R++Q+GY  G +  DT+PYIICY
Sbjct: 1166 MRNGQVALEKYVITKTLTKPPAAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICY 1225

Query: 61   EQGGSSGSAK-GIAQRARHPDELKQEKGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPER 119
            EQG +S ++  GIA+RARHPDE+K E   WL+DIDYYL+QQIHPVVSRLCA IQGTSPER
Sbjct: 1226 EQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPER 1285

Query: 120  LADCLGLDTSKFQHKSSEASSVDPTSSLMFAADDEERYQGCEPLVLSCPSCSGTIDCPPV 179
            LA+CLGLD SK++ KS++A+S DP++SL+FA  DEERY+ CEPL L+CPSCS   +CP +
Sbjct: 1286 LAECLGLDPSKYRSKSNDATSSDPSTSLLFATSDEERYKSCEPLALTCPSCSTAFNCPSI 1345

Query: 180  FKSVCLSVNEKPSSSGTEESDYNFWRKLCCPK-YQENGVGRISPAMIANQVKMQAEKFVL 238
              SVC S+++KP++  TEESD  FW KL CPK  QE+  G ISPAMIANQVK Q + FV 
Sbjct: 1346 ISSVCASISKKPATPETEESDSTFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVS 1405

Query: 239  MYYRGSLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLYRKYTEADLYKQLSY 298
            MYY+G ++C+DE+CKHTTRS + RL+G+ ERGTVCPNYP CNG L RKYTEADLYKQLSY
Sbjct: 1406 MYYKGIMVCEDESCKHTTRSPNFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSY 1465

Query: 299  FCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDRCAYGWVKLEDLVI 357
            FCH+ DT   +EK++   RI VEK + KIRP V   A+  +  RDRCAYGW++L D+VI
Sbjct: 1466 FCHILDTQCSLEKMDVGVRIQVEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1524