Miyakogusa Predicted Gene

Lj3g3v0930310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0930310.1 Non Chatacterized Hit- tr|F6HLJ3|F6HLJ3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.88,6e-19,seg,NULL; VQ,VQ,CUFF.41630.1
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44340.1 | Symbols:  | VQ motif-containing protein | chr2:183...    80   4e-16
AT3G58000.1 | Symbols:  | VQ motif-containing protein | chr3:214...    80   6e-16
AT3G60090.1 | Symbols:  | VQ motif-containing protein | chr3:221...    74   4e-14
AT2G42140.1 | Symbols:  | VQ motif-containing protein | chr2:175...    67   3e-12

>AT2G44340.1 | Symbols:  | VQ motif-containing protein |
          chr2:18314279-18314845 FORWARD LENGTH=188
          Length = 188

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 5  HTCYPKSASSKLGIDRDSHVISKLKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKP 61
          +  + + +SS++ ++R+S VISK+KPKIRIIHI+APE+IKTD  NFR LVQ LTGKP
Sbjct: 6  YQSFHEGSSSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKP 62


>AT3G58000.1 | Symbols:  | VQ motif-containing protein |
          chr3:21474950-21475477 FORWARD LENGTH=175
          Length = 175

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 10 KSASSKLGIDRDSHVISKLKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPEDE 64
          +S+ S + + + S+ I+K KPKIRIIHI+APEIIKTD ANFRELVQ LTGKP+D+
Sbjct: 10 RSSLSSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPDDQ 64


>AT3G60090.1 | Symbols:  | VQ motif-containing protein |
          chr3:22190858-22191331 FORWARD LENGTH=157
          Length = 157

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 6  TCYPKSASSKLGIDRDSHVISKLKPKIRIIHIYAPEIIKTDAANFRELVQRLTGKPE 62
          T Y   + + + ++++S +I+K+KPKIRIIHI+APEII TD  NFR LVQ LTGKPE
Sbjct: 19 TFYGDYSKTLVPMNKNSQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKPE 75


>AT2G42140.1 | Symbols:  | VQ motif-containing protein |
          chr2:17568964-17569482 REVERSE LENGTH=172
          Length = 172

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 6  TCYPKSASSKLGIDRDSHVISKLKPKIRIIHIYAPEIIKTDAANFRELVQRLTGK 60
          T   + +   + + + S  ++K KPKIRIIHI+APEIIKTD ANFRE+VQ LTGK
Sbjct: 7  TVQKRRSLPTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGK 61