Miyakogusa Predicted Gene
- Lj3g3v0928110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0928110.1 tr|D7KSJ4|D7KSJ4_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_,48.39,1e-18,RING/U-box,NULL; no description,Zinc
finger, RING/FYVE/PHD-type; Ring finger,Zinc finger,
RING-type;,CUFF.41620.1
(345 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44410.1 | Symbols: | RING/U-box superfamily protein | chr2:... 141 6e-34
AT3G58030.4 | Symbols: | RING/U-box superfamily protein | chr3:... 126 2e-29
AT3G58030.3 | Symbols: | RING/U-box superfamily protein | chr3:... 126 2e-29
AT3G58030.2 | Symbols: | RING/U-box superfamily protein | chr3:... 126 2e-29
AT3G58030.1 | Symbols: | RING/U-box superfamily protein | chr3:... 126 2e-29
AT2G42030.1 | Symbols: | RING/U-box superfamily protein | chr2:... 105 6e-23
AT1G74990.1 | Symbols: | RING/U-box superfamily protein | chr1:... 102 3e-22
AT2G23780.1 | Symbols: | RING/U-box superfamily protein | chr2:... 94 1e-19
AT1G19310.1 | Symbols: | RING/U-box superfamily protein | chr1:... 93 2e-19
AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | c... 89 5e-18
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | c... 87 2e-17
AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c... 75 5e-14
AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c... 75 5e-14
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 49 4e-06
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:112177... 49 4e-06
>AT2G44410.1 | Symbols: | RING/U-box superfamily protein |
chr2:18328873-18330114 FORWARD LENGTH=413
Length = 413
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 9/173 (5%)
Query: 9 IQERLRILEGTTSTGESVTVDSDVQD---EGRVHREEVGSDVEKAAREGWDLRKRKSAYL 65
IQER+R LE S + + HR+ + + +RE YL
Sbjct: 46 IQERIRQLEVIVSRIREREITTTTTPALVSPNEHRDSTAGVIHERSRERLVENGENKTYL 105
Query: 66 VAKALGLETYTDEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKE 125
+AKAL +E + G F+DCNICLE A DP+LTCCGHLFCW CFY+L Y KE
Sbjct: 106 IAKALNME----KTSSVPGGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIKE 161
Query: 126 CPVCKGEVTEASIIPIYGSASVDCID-KLGSEGDALIVPDRPHASRIESIRQQ 177
CPVC GEVT+A +IPIYG+ DC K E + +P RP+A R+ES+RQ+
Sbjct: 162 CPVCDGEVTDAEVIPIYGNGD-DCDGTKPKLEDCGISLPPRPNAKRVESVRQK 213
>AT3G58030.4 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 77 DEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEA 136
+++ G G+F+DCNICL+++++PVLTCCGHL+CWPC Y+ S AKECPVCKGEVT
Sbjct: 127 EKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSK 185
Query: 137 SIIPIYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQC-RSPTATPIHEMM 190
++ PIYG + + E VP RPHA RIES+R RSP P+ EM+
Sbjct: 186 TVTPIYGRGNH---KREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMI 237
>AT3G58030.3 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 77 DEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEA 136
+++ G G+F+DCNICL+++++PVLTCCGHL+CWPC Y+ S AKECPVCKGEVT
Sbjct: 127 EKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSK 185
Query: 137 SIIPIYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQC-RSPTATPIHEMM 190
++ PIYG + + E VP RPHA RIES+R RSP P+ EM+
Sbjct: 186 TVTPIYGRGNH---KREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMI 237
>AT3G58030.2 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 77 DEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEA 136
+++ G G+F+DCNICL+++++PVLTCCGHL+CWPC Y+ S AKECPVCKGEVT
Sbjct: 127 EKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSK 185
Query: 137 SIIPIYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQC-RSPTATPIHEMM 190
++ PIYG + + E VP RPHA RIES+R RSP P+ EM+
Sbjct: 186 TVTPIYGRGNH---KREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMI 237
>AT3G58030.1 | Symbols: | RING/U-box superfamily protein |
chr3:21485527-21486837 FORWARD LENGTH=436
Length = 436
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 77 DEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEA 136
+++ G G+F+DCNICL+++++PVLTCCGHL+CWPC Y+ S AKECPVCKGEVT
Sbjct: 127 EKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSK 185
Query: 137 SIIPIYGSASVDCIDKLGSEGDALIVPDRPHASRIESIRQQC-RSPTATPIHEMM 190
++ PIYG + + E VP RPHA RIES+R RSP P+ EM+
Sbjct: 186 TVTPIYGRGNH---KREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMI 237
>AT2G42030.1 | Symbols: | RING/U-box superfamily protein |
chr2:17539069-17540346 REVERSE LENGTH=425
Length = 425
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 62/96 (64%), Gaps = 6/96 (6%)
Query: 81 GFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIP 140
G GSF+DC ICL++++DPV+T CGHL+CW C Y+ S AKECPVCKGEV+ ++ P
Sbjct: 133 GSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQW-LQVSEAKECPVCKGEVSVKTVTP 191
Query: 141 IYGSASVDCIDKLGSEG-DALIVPDRPHASRIESIR 175
IYG I K SE +P RP A R ES+R
Sbjct: 192 IYGRG----IQKRESEEVSNTKIPSRPQARRTESLR 223
>AT1G74990.1 | Symbols: | RING/U-box superfamily protein |
chr1:28159837-28160250 REVERSE LENGTH=137
Length = 137
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 70 LGLETYTDEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVC 129
+ + T T+E + S +F CNICLE+AR+P++T CGHLFCWPC Y+ + +S + CPVC
Sbjct: 1 MAINTITNEEDDASNNF-GCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVC 59
Query: 130 KGEVTEASIIPIYGSA--SVDCIDKLGSEGDALIVPDRPHASRIESIRQQ 177
K V E +++P+YG S D KL S + VP+RP A+R E+ R +
Sbjct: 60 KALVKEDTLVPLYGMGKPSSDPRSKLNS---GVTVPNRPAATRTETARPR 106
>AT2G23780.1 | Symbols: | RING/U-box superfamily protein |
chr2:10123551-10124234 REVERSE LENGTH=227
Length = 227
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 84 GSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIPIYG 143
G ++CNIC E+A+DP++T CGHLFCWPC YR + +S ++ECPVCK V + ++P+YG
Sbjct: 23 GGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVPLYG 82
Query: 144 SASVDCIDKLGSEGDALIVPDRPHASRIES 173
+ D L +P+RP R E+
Sbjct: 83 RGK-NQTDPRSKRYPGLRIPNRPTGQRPET 111
>AT1G19310.1 | Symbols: | RING/U-box superfamily protein |
chr1:6676424-6677104 REVERSE LENGTH=226
Length = 226
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 87 YDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIPIYGSAS 146
++CNICL++A+DP++T CGHLFCWPC Y+ + +S +K+CPVCK + E ++P+YG
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLYGRGK 80
Query: 147 VDCIDKLGSEGDALIVPDRPHASRIESIR 175
D L VP+RP R E+ +
Sbjct: 81 SS-ADPRSKSIPGLEVPNRPSGQRPETAQ 108
>AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 |
chr4:13735576-13736307 FORWARD LENGTH=243
Length = 243
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 58 RKRKSAYLVAKALGLETYTDEAEGFSGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLS 117
R + ++ + L T + +DCNICL+ A DPV+T CGHLFCWPC Y+
Sbjct: 13 RAHDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWL 72
Query: 118 YAY--SVA-----KECPVCKGEVTEASIIPIYGSASVDCIDKLGSEG-DALI--VPDRPH 167
+ SV+ CPVCK +T S++P+YG GS+ DAL +P RP
Sbjct: 73 HVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPA 132
Query: 168 ASRIESIRQQCRSPTATPIHEMMISYLLHNLASFEEQFQFETPGATTSRPNDLA 221
S + + S + H+ + S HN Q+ G TT+ DLA
Sbjct: 133 PSALRNPITSASSLNPSLQHQTL-SPSFHN-------HQYSPRGFTTTESTDLA 178
>AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 |
chr4:14007614-14008195 REVERSE LENGTH=193
Length = 193
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 13/76 (17%)
Query: 83 SGSFYDCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKE-------------CPVC 129
SG +DCNICL+ RDPV+T CGHLFCWPC ++ +YA + +++ CPVC
Sbjct: 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVC 74
Query: 130 KGEVTEASIIPIYGSA 145
K +V+EA+++PIYG
Sbjct: 75 KSDVSEATLVPIYGRG 90
>AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
chr4:1557905-1558654 REVERSE LENGTH=249
Length = 249
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Query: 87 YDCNICLEMARDPVLTCCGHLFCWPCFYRL--------SYAYSVAKECPVCKGEVTEASI 138
+DCNICL+ ++PV+T CGHLFCWPC ++ S Y ++CPVCK +V+ +++
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105
Query: 139 IPIYG 143
+P+YG
Sbjct: 106 VPLYG 110
>AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
chr4:1557905-1558654 REVERSE LENGTH=249
Length = 249
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Query: 87 YDCNICLEMARDPVLTCCGHLFCWPCFYRL--------SYAYSVAKECPVCKGEVTEASI 138
+DCNICL+ ++PV+T CGHLFCWPC ++ S Y ++CPVCK +V+ +++
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105
Query: 139 IPIYG 143
+P+YG
Sbjct: 106 VPLYG 110
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 56 DLRKRKSAYLVAKALGLETYTDE--AEGF---------SGSFYDCNICLEMARDPVLTCC 104
DL K +L K+ GLE + +E F G +C ICLE D VLT C
Sbjct: 750 DLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPC 809
Query: 105 GHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASII 139
H C C S+ S + CPVC+ V++ +I
Sbjct: 810 AHRLCRECLLA-SWRNSTSGLCPVCRNTVSKQELI 843
>AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 |
chr2:11217767-11220415 REVERSE LENGTH=381
Length = 381
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 88 DCNICLEMARDPVLTCCGHLFCWPCFYRLSYAYSVAKECPVCKGEVTEASIIPIYGS 144
C +CL + P T CGH+FCW C + +ECP+C+ T +S++ +Y S
Sbjct: 326 KCTLCLSTRQHPTATPCGHVFCWSCIMEWC---NEKQECPLCRTPNTHSSLVCLYHS 379