Miyakogusa Predicted Gene

Lj3g3v0917060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0917060.1 CUFF.41615.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32840.2 | Symbols:  | proline-rich family protein | chr2:139...    77   8e-15
AT2G32840.1 | Symbols:  | proline-rich family protein | chr2:139...    77   9e-15
AT1G04930.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    60   1e-09
AT1G04930.2 | Symbols:  | hydroxyproline-rich glycoprotein famil...    51   7e-07

>AT2G32840.2 | Symbols:  | proline-rich family protein |
           chr2:13933428-13934836 REVERSE LENGTH=291
          Length = 291

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 84/190 (44%), Gaps = 36/190 (18%)

Query: 45  LPIRAPNPQFPKPH-----DPSSHHYLYPFASSARGGGPFVAKGFGPLPADPTVS---GY 96
           LPIR  N     PH     DPSS   +YPF SS RG      +      ADP  S   G 
Sbjct: 74  LPIRRSNSVTNSPHQPPHPDPSS--LIYPFGSSGRGFPTRPVRQNSNSVADPVGSPSPGG 131

Query: 97  XXXXXXSLMYSHGVRGMHLDYLTHALHMNRPPHLPYPHTGHAPPASTASPPVKGHTKAT- 155
                    Y HG    +LD +   +    P +   P  G             GH K   
Sbjct: 132 YTPRGPVYGYHHGQFVSNLDPMNQFMRAAHPQNQQSPQLG------------SGHMKGVP 179

Query: 156 ---------ARSAASDVNGHKDTSTRERSRDETFVVIRDRKVRLTENASLYALCRSWLRN 206
                    + ++  D +GHK    + RSRD+  V++R RKVR+TE ASLY+LCRSWLRN
Sbjct: 180 HFLQPRATPSPTSILDNSGHK----KARSRDDALVLVRKRKVRITEGASLYSLCRSWLRN 235

Query: 207 GIIEESQPQQ 216
           G  E  +PQ+
Sbjct: 236 GAHEGIKPQR 245


>AT2G32840.1 | Symbols:  | proline-rich family protein |
           chr2:13933101-13934836 REVERSE LENGTH=337
          Length = 337

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 85/189 (44%), Gaps = 34/189 (17%)

Query: 45  LPIRAPNPQFPKPH-----DPSSHHYLYPFASSARGGGPFVAKGFGPLPADPTVS---GY 96
           LPIR  N     PH     DPSS   +YPF SS RG      +      ADP  S   G 
Sbjct: 74  LPIRRSNSVTNSPHQPPHPDPSS--LIYPFGSSGRGFPTRPVRQNSNSVADPVGSPSPGG 131

Query: 97  XXXXXXSLMYSHGVRGMHLDYLTHALHMNRPPHLPYPHTGHA---------PPASTASPP 147
                    Y HG    +LD +   +    P +   P  G            P +T SP 
Sbjct: 132 YTPRGPVYGYHHGQFVSNLDPMNQFMRAAHPQNQQSPQLGSGHMKGVPHFLQPRATPSP- 190

Query: 148 VKGHTKATARSAASDVNGHKDTSTRERSRDETFVVIRDRKVRLTENASLYALCRSWLRNG 207
                     ++  D +GHK    + RSRD+  V++R RKVR+TE ASLY+LCRSWLRNG
Sbjct: 191 ----------TSILDNSGHK----KARSRDDALVLVRKRKVRITEGASLYSLCRSWLRNG 236

Query: 208 IIEESQPQQ 216
             E  +PQ+
Sbjct: 237 AHEGIKPQR 245


>AT1G04930.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr1:1396546-1398988 REVERSE LENGTH=332
          Length = 332

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 58  HDPSSHHYLYPFASSARGGGPFVAKGFGPLPADPTV-----SGYXXXXXXSLMYSHG-VR 111
            DPS+   LYPFA   RG      +GF    ADP+V     SGY      S  Y  G   
Sbjct: 85  QDPSA--VLYPFALPGRGFSARPVRGFV---ADPSVTAGNLSGYPPRP--SFTYDPGPYE 137

Query: 112 GMHLDYLTHALHMNRPPHL-PYPHTGHAPPASTASPPVKGHTKATARSAASDVNGHKDTS 170
              ++ L       R P + P P  G   P      P++   +      A       DTS
Sbjct: 138 QRQMESLLQQFIRERNPQIRPLPRLGLGSPVGLG--PIRASPQFLQPRVAPPPTSILDTS 195

Query: 171 T--RERSRDETFVVIRDRKVRLTE-NASLYALCRSWLRNGIIEESQPQQ 216
              + RS+D    V+R RKVR+TE ++SLY+L RSWL+NG     QPQ+
Sbjct: 196 RNRKARSKDGALAVVRGRKVRITEGSSSLYSLGRSWLKNGAHVGIQPQR 244


>AT1G04930.2 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr1:1396546-1398988 REVERSE LENGTH=362
          Length = 362

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 80/197 (40%), Gaps = 45/197 (22%)

Query: 58  HDPSSHHYLYPFASSARGGGPFVAKGFGPLPADPTV-----SGYXXXXXXSLMYSHG-VR 111
            DPS+   LYPFA   RG      +GF    ADP+V     SGY      S  Y  G   
Sbjct: 85  QDPSA--VLYPFALPGRGFSARPVRGFV---ADPSVTAGNLSGYPPRP--SFTYDPGPYE 137

Query: 112 GMHLDYLTHALHMNRPPHL-PYPHTGHAPPAST----ASP----PVKGHTKATARSAASD 162
              ++ L       R P + P P  G   P       ASP    P     K +  +A  D
Sbjct: 138 QRQMESLLQQFIRERNPQIRPLPRLGLGSPVGLGPIRASPQFLQPRLSSGKISGENARDD 197

Query: 163 VN--------------------GHKDTST--RERSRDETFVVIRDRKVRLTE-NASLYAL 199
                                    DTS   + RS+D    V+R RKVR+TE ++SLY+L
Sbjct: 198 PKFLDWSLSRTESDCTVAPPPTSILDTSRNRKARSKDGALAVVRGRKVRITEGSSSLYSL 257

Query: 200 CRSWLRNGIIEESQPQQ 216
            RSWL+NG     QPQ+
Sbjct: 258 GRSWLKNGAHVGIQPQR 274