Miyakogusa Predicted Gene

Lj3g3v0916990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0916990.1 Non Chatacterized Hit- tr|K3YGP0|K3YGP0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si013408,45.93,1e-18,seg,NULL; bromo domain,Bromodomain;
CG13597-PA,NULL; FALZ-RELATED BROMODOMAIN-CONTAINING
PROTEINS,NU,CUFF.41613.1
         (384 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44430.1 | Symbols:  | DNA-binding bromodomain-containing pro...   131   9e-31
AT3G60110.1 | Symbols:  | DNA-binding bromodomain-containing pro...   120   2e-27
AT3G57980.1 | Symbols:  | DNA-binding bromodomain-containing pro...   111   7e-25
AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing pro...    98   1e-20
AT1G61215.1 | Symbols: BRD4 | bromodomain 4 | chr1:22573173-2257...    69   5e-12

>AT2G44430.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr2:18333603-18336165 FORWARD LENGTH=646
          Length = 646

 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 90/147 (61%), Gaps = 3/147 (2%)

Query: 3   KSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSCT 62
           KS+PL+ + +LI+ H   SLFERRL +QE  D YK  V+QH+D+ETIQ +L++GSY S +
Sbjct: 308 KSQPLISLLDLIRSHPRGSLFERRLRSQEAKD-YKSMVKQHLDIETIQRKLKQGSYDSSS 366

Query: 63  SAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSHGXXX--XXXXXXXXXXXX 120
             F+RDL LLFTNA VFFP  S+ES AA +L  +V  EMR                    
Sbjct: 367 LIFYRDLQLLFTNAIVFFPLSSSESMAAHELRAVVSQEMRKETGKAGPRLIKQEASGMRS 426

Query: 121 XNAPPAKPDSLLSKHQASAPILVCRKR 147
             A     DS LS+ ++S P++VC+KR
Sbjct: 427 GKADAETSDSSLSRQKSSGPLVVCKKR 453


>AT3G60110.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr3:22197993-22201159 FORWARD LENGTH=641
          Length = 641

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 102/163 (62%), Gaps = 13/163 (7%)

Query: 3   KSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSCT 62
           KS+PL+ + +LI+ H   S+FE RL +Q+  D YK  +RQH+D++TI+ +++KGSY S +
Sbjct: 299 KSQPLIDIIKLIRSHPRGSVFESRLRSQDTKD-YKRLIRQHLDMKTIEKKMEKGSYVSSS 357

Query: 63  SAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSHGXXXXXXXXXXXXXXXXN 122
            +F+RDL LLFTNA VFFP  S+ES AAQ+L  +V +EM+                    
Sbjct: 358 LSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEMKKRTGKLGHC----------- 406

Query: 123 APPAKPDSLLSKHQASAPILV-CRKRSSISAKASPATSGQKSD 164
              ++ +S +S+ ++S   LV C+K+SS   K SP++S ++ D
Sbjct: 407 VIKSEAESSVSRQKSSVLSLVPCKKKSSALKKTSPSSSSRQKD 449


>AT3G57980.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr3:21466919-21469148 REVERSE LENGTH=632
          Length = 632

 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 35/216 (16%)

Query: 1   MVKSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSS 60
            V+S+PL    E+++ H   S F RRLE QE SD Y+  +RQH+D E I+ R+++G Y +
Sbjct: 272 FVESQPLSDFIEILQSHPIGSHFSRRLETQETSDYYR-IIRQHIDFEMIRSRVEEGYYKT 330

Query: 61  CTSAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSHGXXXXXXXXXXXXXXX 120
             + FFRDLLLL  N  VF+ E S E  AA+QL+ ++  +M                   
Sbjct: 331 ARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLYQLIKKQM-------------SFKIPK 377

Query: 121 XNAPPAKPDSLLS----------KHQASAPILVCRKRSSISAKASPATSGQKSDTQTIAN 170
              PP K D+L++          K   S PI+ CRKRSS++ + SPA     S T+T+  
Sbjct: 378 QTLPPPKEDALVTSKEEVKVSSLKPTLSVPIIACRKRSSLAVR-SPA-----SVTETLKK 431

Query: 171 DKKEKPPSDAKPPLKPSNSETDEEEAPKTKEKPVTT 206
             +  P  D K       SE +E       EKP+ +
Sbjct: 432 KTRVVPTVDEK-----QVSEEEEGRPSDKDEKPIVS 462


>AT2G42150.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr2:17572463-17574564 FORWARD LENGTH=631
          Length = 631

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 99/188 (52%), Gaps = 16/188 (8%)

Query: 2   VKSEPLVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSC 61
           V+S+PL+   E++  H   S F RRLE QE +  Y   +R+HVD E I+ R++ G Y S 
Sbjct: 271 VESQPLISFVEILLSHPCGSHFSRRLERQE-TIEYGTIIREHVDFEIIRKRVEGGLYKSW 329

Query: 62  TSAFFRDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRS--HGXXXXXXXXXXXXXX 119
              FFRDLLLL  NA VF+  GS+E + A+QLH +V  +M +   G              
Sbjct: 330 RINFFRDLLLLVNNARVFYHRGSSEFKFAEQLHQLVKKQMTTTLKGLSNRDEISISPPKE 389

Query: 120 XXNA-PPAKPDSLLSKHQASAP-ILVCRKRSSISAKAS------PATSGQKSDTQTIAND 171
              A P +KP S  SK + S P I+ CRKRS+++AK        P    +K+D      D
Sbjct: 390 EVVAIPSSKPVS--SKPRMSVPNIVACRKRSALAAKPLLLLPPGPDKKAKKTDHVV---D 444

Query: 172 KKEKPPSD 179
             EKP SD
Sbjct: 445 YDEKPVSD 452


>AT1G61215.1 | Symbols: BRD4 | bromodomain 4 |
           chr1:22573173-22575374 FORWARD LENGTH=475
          Length = 475

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 7   LVGVWELIKGHENISLFERRLENQEDSDRYKETVRQHVDLETIQLRLQKGSYSSCTSAFF 66
           L+ ++  I  +E   +F RRL++Q+   RYK+ VR+H+DL+T+Q R+   S SS     F
Sbjct: 269 LMKIYNTIAQNECALVFRRRLDSQKRG-RYKKLVRRHMDLDTVQSRINGCSISS-AKELF 326

Query: 67  RDLLLLFTNATVFFPEGSTESRAAQQLHHIVISEMRSH 104
           RD LL+  NA +F+ + + E ++A  L  IV   +R +
Sbjct: 327 RDFLLVANNAAIFYSKNTREYKSAVGLRDIVTKSLRHY 364