Miyakogusa Predicted Gene

Lj3g3v0896950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0896950.1 Non Chatacterized Hit- tr|C0HDR7|C0HDR7_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,39.89,3e-16,coiled-coil,NULL; seg,NULL,CUFF.41621.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32850.2 | Symbols:  | Protein kinase superfamily protein | c...   151   6e-37
AT2G32850.1 | Symbols:  | Protein kinase superfamily protein | c...   140   1e-33

>AT2G32850.2 | Symbols:  | Protein kinase superfamily protein |
           chr2:13935448-13937977 REVERSE LENGTH=670
          Length = 670

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 178/350 (50%), Gaps = 64/350 (18%)

Query: 37  FWSTQHANDSLVPEE-KSKPIYDEPSSQHMSSKHDRVHLENDQVPKKINTNKG---GTTQ 92
           FW+TQHA  S+V E+ K+ P +DEP+S   +SK +RV +++ Q PKK +  +G   G  +
Sbjct: 356 FWATQHAKTSVVSEDNKNMPKFDEPNSN--TSKSERVRVDSHQ-PKKPSPVRGEARGIQR 412

Query: 93  THTVKSSVHGKPHKPDTKSSKDFEINFFQDKDNANQRRVSNMENNTNFQDQAFNTFVAEF 152
              +++++  K   P   +               N  RVS        +D AFN+FVA+F
Sbjct: 413 NKDLETTISQKNTTPAAAN---------------NMTRVS--------KDDAFNSFVADF 449

Query: 153 DTTKLNSGLGNKSXXXXXXXXXXXXXXXQLKEANLEKAEITSKYEKLSAICRSQRQELQD 212
           DTTK ++G  NK                +LK+   EKAEIT+K+EKLSAICRSQRQELQD
Sbjct: 450 DTTKFDNG--NKPGKEEALEAEIQRLKDELKQTKSEKAEITAKFEKLSAICRSQRQELQD 507

Query: 213 LKQAL--------ATRTPSQSREGLKTSPGITSSPSELQRQKIGGTA------ESELKTP 258
           LKQ L         +R  SQ+    + SPG+ S  S   R K+ GT        S   T 
Sbjct: 508 LKQTLASKSASPSPSRDSSQN----QPSPGMHSMSSTPSRDKMEGTMWELQQDRSNWSTG 563

Query: 259 SSEPKSWQAFPEEPGPV-KSLSADN---ATKSVRTKNGPQNKQPTQLASDFDSWGFGADK 314
           SS+  SWQ F +E  PV +S S  N     +SVRT++ P +   TQ    F+ WGF  + 
Sbjct: 564 SSDTNSWQPFSDEAKPVMESASKGNNNTINQSVRTRSKPASAAGTQ---GFEPWGFETES 620

Query: 315 FSAVRAGSPQMPRPGE-------GSKAQLFGNPKASESKSASQPAGWAGF 357
           F A    +      G         S +Q +GN K  E++  +QPAGWAGF
Sbjct: 621 FRAAATSAAATSASGTQRSMGSGNSTSQRYGNSKMRENQKTAQPAGWAGF 670


>AT2G32850.1 | Symbols:  | Protein kinase superfamily protein |
           chr2:13935448-13937977 REVERSE LENGTH=650
          Length = 650

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 167/346 (48%), Gaps = 76/346 (21%)

Query: 37  FWSTQHANDSLVPEE-KSKPIYDEPSSQHMSSKHDRVHLENDQVPKKINTNKG---GTTQ 92
           FW+TQHA  S+V E+ K+ P +DEP+S   +SK +RV +++ Q PKK +  +G   G  +
Sbjct: 356 FWATQHAKTSVVSEDNKNMPKFDEPNSN--TSKSERVRVDSHQ-PKKPSPVRGEARGIQR 412

Query: 93  THTVKSSVHGKPHKPDTKSSKDFEINFFQDKDNANQRRVSNMENNTNFQDQAFNTFVAEF 152
              +++++  K   P   +               N  RVS        +D AFN+FVA+F
Sbjct: 413 NKDLETTISQKNTTPAAAN---------------NMTRVS--------KDDAFNSFVADF 449

Query: 153 DTTKLNSGLGNKSXXXXXXXXXXXXXXXQLKEANLEKAEITSKYEKLSAICRSQRQELQD 212
           DTTK ++G  NK                +LK+   EKAEIT+K+EKLSAICRSQRQELQD
Sbjct: 450 DTTKFDNG--NKPGKEEALEAEIQRLKDELKQTKSEKAEITAKFEKLSAICRSQRQELQD 507

Query: 213 LKQAL--------ATRTPSQSREGLKTSPGITSSPSELQRQKIGGTA------ESELKTP 258
           LKQ L         +R  SQ+    + SPG+ S  S   R K+ GT        S   T 
Sbjct: 508 LKQTLASKSASPSPSRDSSQN----QPSPGMHSMSSTPSRDKMEGTMWELQQDRSNWSTG 563

Query: 259 SSEPKSWQAFPEEPGPVKSLSADNATKSVRTKNGPQNKQPTQLASDFDSWGFGADKFSAV 318
           SS+  SWQ F +E  PV   SA   T+                   F+ WGF  + F A 
Sbjct: 564 SSDTNSWQPFSDEAKPVME-SASKGTQG------------------FEPWGFETESFRAA 604

Query: 319 RAGSPQMPRPGE-------GSKAQLFGNPKASESKSASQPAGWAGF 357
              +      G         S +Q +GN K  E++  +QPAGWAGF
Sbjct: 605 ATSAAATSASGTQRSMGSGNSTSQRYGNSKMRENQKTAQPAGWAGF 650