Miyakogusa Predicted Gene
- Lj3g3v0883710.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0883710.1 Non Chatacterized Hit- tr|I1I2F3|I1I2F3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,30.9,1e-18,seg,NULL; Rad21_Rec8,Rad21/Rec8-like protein,
C-terminal, eukaryotic; no description,Rad21/Rec8-like,CUFF.41591.1
(347 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like... 86 3e-17
AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesi... 61 1e-09
AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein | c... 58 9e-09
AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family protei... 57 1e-08
AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family ... 57 1e-08
AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein | c... 57 1e-08
AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fami... 50 3e-06
AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family prote... 50 3e-06
>AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
family protein | chr3:21997262-22000496 FORWARD
LENGTH=693
Length = 693
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 259 SRTTGTLSVRTRATAQYLKAHSPISPILEDPAV-DLSLNKILEGKSRKISARMFYEVLVL 317
S+ + L+ R RA AQYLK S SP DLSL++IL GK+RK++ARMF+E LVL
Sbjct: 603 SQDSAALTGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVL 662
Query: 318 KTHGLIDVHQKEPYDDISLKLMPSL 342
K+ GLID+ Q PY DI+LKLMP+L
Sbjct: 663 KSRGLIDMQQDRPYGDIALKLMPAL 687
>AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1
protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031
Length = 1031
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 266 SVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLIDV 325
S RTRA A+YL+ + E+ L +K+L GK+RK ++RMF+E LVLKT I V
Sbjct: 952 SSRTRAVAKYLQ--TLFDKETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTRDYIQV 1009
Query: 326 HQKEPYDDISLKLMPSLSNA 345
Q +PY+ I +K P L+ +
Sbjct: 1010 EQGKPYESIIIKPRPKLTKS 1029
>AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein |
chr5:16359611-16362823 REVERSE LENGTH=678
Length = 678
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 264 TLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLI 323
T S RTR A++L+ + + + +SL ++ G+++K SAR+FYE LVLKT G +
Sbjct: 597 TWSSRTRNVAKFLEK-TFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYV 655
Query: 324 DVHQKEPYDDISL 336
+V Q PY D+ L
Sbjct: 656 EVKQNHPYSDVFL 668
>AT4G05360.1 | Symbols: | Zinc knuckle (CCHC-type) family protein |
chr4:2728204-2732337 FORWARD LENGTH=735
Length = 735
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Query: 250 NTPASSQGTSRTTGTLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISAR 309
NTP S T + +G S RTRA AQ+LK E + LSLNKILEGK+RKI+AR
Sbjct: 261 NTPVRSPVT-QDSGGFSGRTRALAQHLK---------ERYSGYLSLNKILEGKTRKIAAR 310
Query: 310 MFYEVL 315
MFYE L
Sbjct: 311 MFYETL 316
>AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family
protein | chr5:16359611-16363722 REVERSE LENGTH=809
Length = 809
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 264 TLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLI 323
T S RTR A++L+ + + + +SL ++ G+++K SAR+FYE LVLKT G +
Sbjct: 728 TWSSRTRNVAKFLEK-TFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYV 786
Query: 324 DVHQKEPYDDISL 336
+V Q PY D+ L
Sbjct: 787 EVKQNHPYSDVFL 799
>AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein |
chr5:16359611-16363722 REVERSE LENGTH=810
Length = 810
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 264 TLSVRTRATAQYLKAHSPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLI 323
T S RTR A++L+ + + + +SL ++ G+++K SAR+FYE LVLKT G +
Sbjct: 729 TWSSRTRNVAKFLEK-TFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYV 787
Query: 324 DVHQKEPYDDISL 336
+V Q PY D+ L
Sbjct: 788 EVKQNHPYSDVFL 800
>AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
protein | chr5:1624325-1629144 FORWARD LENGTH=627
Length = 627
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 269 TRATAQYLKAH--SPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLIDVH 326
T + +LK H +P +P +E SLNK+ G R +A++F++ VL T G+I V+
Sbjct: 558 TDSIKSHLKTHFETPGAPQVE------SLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVN 611
Query: 327 QKEPYDDISLKLMPSL 342
Q EPY DI + P++
Sbjct: 612 QAEPYGDILIARGPNM 627
>AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein
| chr5:1624712-1629144 FORWARD LENGTH=617
Length = 617
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 269 TRATAQYLKAH--SPISPILEDPAVDLSLNKILEGKSRKISARMFYEVLVLKTHGLIDVH 326
T + +LK H +P +P +E SLNK+ G R +A++F++ VL T G+I V+
Sbjct: 548 TDSIKSHLKTHFETPGAPQVE------SLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVN 601
Query: 327 QKEPYDDISLKLMPSL 342
Q EPY DI + P++
Sbjct: 602 QAEPYGDILIARGPNM 617