Miyakogusa Predicted Gene

Lj3g3v0883700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0883700.1 tr|G7J066|G7J066_MEDTR Sister chromatid cohesion
1 protein OS=Medicago truncatula GN=MTR_3g005770
PE,31.82,0.003,seg,NULL; Rad21_Rec8_N,Rad21/Rec8-like protein,
N-terminal; COHESIN SUBUNIT RAD21,NULL; SCC1 / RAD21,CUFF.41590.1
         (439 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like...   216   3e-56
AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesi...   154   1e-37
AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family ...   127   2e-29
AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein | c...   127   2e-29
AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family prote...    95   1e-19
AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fami...    87   2e-17

>AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
           family protein | chr3:21997262-22000496 FORWARD
           LENGTH=693
          Length = 693

 Score =  216 bits (550), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 228/451 (50%), Gaps = 95/451 (21%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYS T LARKGPL TVW AAH+  RLKKS YT+ +IP TV +IM P VP+ALR S HLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQSITLPENFNLDALN 120
           +GVVRIYSKKVDYL++D N++ T ++KAF + Q+ LPEDARQAP +S+TLP+  NLD  +
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LGDD-IDHNWVEDVHRRSQEDITLEDRNPVIMDHYVAISFDEDMVMDSSRTEVLPDSGER 179
           L DD +D  +  D H RS+EDITL D+ P  +D YVA++FDED++ +S            
Sbjct: 121 LEDDTLDMEF--DNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI----------- 167

Query: 180 PMEEDTVPQSPSMNVAGVQDRSPTVQITSPAIQHPG--------GDGPQNFQDPEATFPV 231
           PM+ D                    Q T P  +H G          GP N +  ++    
Sbjct: 168 PMDVD--------------------QSTEPVSRHTGEIDVETAHETGPDN-EPRDSNIAF 206

Query: 232 SPSGNSPTQATQAMPIEVLRDASNDPTQTTQTFPGSPSG--NSPTQATQAMPVEVLRDAS 289
                SP   T+    EV      DP Q+  T    P+   N  T       +E +RDA+
Sbjct: 207 DTGTYSPRNVTEEF-TEV-----QDPRQSNLTEERIPNSERNDATSPGTVPEIERMRDAA 260

Query: 290 DDPIQITQTFPVSPSGNSPTQATQAMPIEVLRDANNDYNIENPPVYQDLGDNDTEPNKDL 349
            D         +SP+ + P+ A Q   + V R                         + L
Sbjct: 261 HD---------LSPTSH-PSFAAQQQDVRVER------------------------TESL 286

Query: 350 DQTMNERDP-IPEMIDDLGPEGISGPPPLHFGPSTPATSQGGTQDAHVFVEHNSPNLVLR 408
           D+T+NE++P IP + +++   G      L  G  +P ++ G  ++   FV H SP LVL+
Sbjct: 287 DETLNEKEPTIPSIDEEMLNSGRHSAFELRSG--SPGSAAGSEEERADFV-HPSPQLVLQ 343

Query: 409 SSXXXXXXXXXXXXRGRKRKQLFDEPIVLSN 439
            S            R RKRK  FD   VL+N
Sbjct: 344 PS-----PPPQPQRRARKRKN-FDGVTVLTN 368


>AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion
           1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031
          Length = 1031

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 3/147 (2%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYSQ  LA+KGPL T+WIAAHL+ +L+K+    TDI  +V  I+ P  PIALR+S HLL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQSITLPENFNLDALN 120
           LGVVRIYS+KV+YLF DC+  L  + +AF +  + LP +   AP  SITLPE F+LD   
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121 LGDD--IDHNWVEDVHRRSQEDITLED 145
           L D+     N+V D H  ++E ITL+D
Sbjct: 121 LPDNEIFQGNYV-DHHVSTKEQITLQD 146


>AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family
           protein | chr5:16359611-16363722 REVERSE LENGTH=809
          Length = 809

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 99/177 (55%), Gaps = 19/177 (10%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGV-PIALRMSGHL 59
           MFYS   ++RKGPL  +W+AA+   +LKKS   AT IPS+V  I+   +  +  R+  +L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQ----SITLPENFN 115
           LLGVVRIYSKKVD+LF DCN  L G+ K F A +    +     P      SI LPE F 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119

Query: 116 LDALNLGDDIDHNWVEDVHR---RSQEDITLED--RNPVIMDHYVAISFD--EDMVM 165
           LDA +LG       +ED H    +  EDITL+D  +    MD Y    FD  ED++ 
Sbjct: 120 LDAFDLG------VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLF 170


>AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein |
           chr5:16359611-16363722 REVERSE LENGTH=810
          Length = 810

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 99/177 (55%), Gaps = 19/177 (10%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGV-PIALRMSGHL 59
           MFYS   ++RKGPL  +W+AA+   +LKKS   AT IPS+V  I+   +  +  R+  +L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQLTLPEDARQAPVQ----SITLPENFN 115
           LLGVVRIYSKKVD+LF DCN  L G+ K F A +    +     P      SI LPE F 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119

Query: 116 LDALNLGDDIDHNWVEDVHR---RSQEDITLED--RNPVIMDHYVAISFD--EDMVM 165
           LDA +LG       +ED H    +  EDITL+D  +    MD Y    FD  ED++ 
Sbjct: 120 LDAFDLG------VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLF 170


>AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein
           | chr5:1624712-1629144 FORWARD LENGTH=617
          Length = 617

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLL 60
           MFYS   LARK PL  +W+AA L  ++ +      DI    + I++P VP+ALR+SG L+
Sbjct: 1   MFYSHQLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILM 60

Query: 61  LGVVRIYSKKVDYLFHDCNVVLTGLSKAFAAIQL----TLPEDARQAPVQSITLPENFNL 116
            GVV +Y +KV  LF D N  L  ++ A+    +     LP+    A  +++TLPEN   
Sbjct: 61  GGVVIVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEA 120

Query: 117 D 117
           D
Sbjct: 121 D 121


>AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
           protein | chr5:1624325-1629144 FORWARD LENGTH=627
          Length = 627

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 6   TFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVQHIMDPGVPIALRMSGHLLLGVVR 65
           T LARK PL  +W+AA L  ++ +      DI    + I++P VP+ALR+SG L+ GVV 
Sbjct: 16  TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVI 75

Query: 66  IYSKKVDYLFHDCNVVLTGLSKAFAAIQL----TLPEDARQAPVQSITLPENFNLD 117
           +Y +KV  LF D N  L  ++ A+    +     LP+    A  +++TLPEN   D
Sbjct: 76  VYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEAD 131