Miyakogusa Predicted Gene
- Lj3g3v0883690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0883690.1 Non Chatacterized Hit- tr|B8LMB6|B8LMB6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,31.63,4e-18,seg,NULL; RRM,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.41594.1
(240 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 280 4e-76
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 280 4e-76
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 149 2e-36
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 137 1e-32
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 123 1e-28
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 117 6e-27
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 112 3e-25
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 98 5e-21
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 6e-20
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 87 7e-18
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 81 5e-16
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 81 5e-16
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 80 1e-15
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 78 4e-15
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 74 9e-14
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 9e-14
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 73 2e-13
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 72 3e-13
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 72 3e-13
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 4e-13
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 72 4e-13
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 72 4e-13
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 72 4e-13
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 5e-13
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 5e-13
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 71 6e-13
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 71 6e-13
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 71 6e-13
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 71 6e-13
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 71 7e-13
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 2e-12
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 66 2e-11
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 66 2e-11
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 62 2e-10
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 3e-10
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 62 4e-10
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 62 4e-10
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 6e-10
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 6e-10
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 6e-10
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 61 8e-10
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 2e-09
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 2e-09
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 58 4e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 58 4e-09
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 5e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 58 7e-09
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 57 9e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 56 2e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 2e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 2e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 56 2e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 55 4e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 55 4e-08
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 55 4e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 4e-08
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 55 6e-08
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 54 7e-08
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 54 7e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 52 3e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 52 3e-07
AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 52 4e-07
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 52 5e-07
AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 6e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 51 6e-07
AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 51 7e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 51 7e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 51 7e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 51 7e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 50 1e-06
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 50 1e-06
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 50 1e-06
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 50 1e-06
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 50 1e-06
AT2G47310.1 | Symbols: | flowering time control protein-related... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 2e-06
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 50 2e-06
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 50 2e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 2e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 2e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 2e-06
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 49 2e-06
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 5e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 5e-06
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 5e-06
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 5e-06
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 6e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 6e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 6e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 6e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 48 6e-06
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 280 bits (717), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 133/182 (73%), Positives = 161/182 (88%), Gaps = 1/182 (0%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SEA RR+Y+GNIPRT+TN++L +V+EH AVEK +VMYDKYSGRSRRF F T+K+VEDAN
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPL-TTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
A +EKLNG + GREIKVN+TEKP+ ++ D ++Q+E+S +VDSPYKVYVGNLAKTVT +
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKE 191
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
ML+N FSEKGKV+SAKVSRVPGTSKS+GFGFVTFSS+EDVEAAI + NN+ LEGQKIRVN
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
Query: 239 KA 240
KA
Sbjct: 252 KA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 280 bits (717), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 133/182 (73%), Positives = 161/182 (88%), Gaps = 1/182 (0%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SEA RR+Y+GNIPRT+TN++L +V+EH AVEK +VMYDKYSGRSRRF F T+K+VEDAN
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPL-TTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
A +EKLNG + GREIKVN+TEKP+ ++ D ++Q+E+S +VDSPYKVYVGNLAKTVT +
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKE 191
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
ML+N FSEKGKV+SAKVSRVPGTSKS+GFGFVTFSS+EDVEAAI + NN+ LEGQKIRVN
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
Query: 239 KA 240
KA
Sbjct: 252 KA 253
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RLYVGN+P T+T+ EL+ I E V +++YDK + RSR F FVT+ ++E+A A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 125 LNGTQIGGREIKVNVTEKPL---TTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
N +QIGGR +KVN E P V ++ YVDSP+KVY GNL +TS LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ F ++ VL AKV T +S GFGF++F S E+V++A+++ N +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
++ ++Y GN+ LT+ L + + V A+V+Y++ +GRSR F F++ ++ E+ +
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 121 AIEKLNGTQIGGREIKVNV-TEKPLTTVDFPLVQAEESE 158
A+ +NG ++ GR +++N+ +E+ TV P V+ E+E
Sbjct: 276 ALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETE 314
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 8/176 (4%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+LY GN+P + + LA I+Q+ A E EV+Y++ +G+SR FAFVT+ VED N I+
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
L+GT+ GR +KVN +KP +E Y ++ +K++VGNL+ TVTS+ L F
Sbjct: 146 LDGTEYLGRALKVNFADKPKPN--------KEPLYPETEHKLFVGNLSWTVTSESLAGAF 197
Query: 185 SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
E G V+ A+V T +S G+GFV +SS ++E A+ S + LEG+ IRVN A
Sbjct: 198 RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
E + +L+VGN+ T+T++ LA +E V A V++D +GRSR + FV + +
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 121 AIEKLNGTQIGGREIKVNVTE 141
A+E L+G ++ GR I+VN+ +
Sbjct: 234 ALESLDGFELEGRAIRVNLAQ 254
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 13/192 (6%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
AD +L+VGN+P + + +LA + + VE EV+YDK +GRSR F FVT+ +V + AA
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVD-------------FPLVQAEESEYVDSPYKVYV 168
++ NG ++ GR ++VN P D S +VYV
Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
GNL+ V L++ FSE+GKV+ A+V + +S GFGFVT+ S ++V+ AI S + A
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Query: 229 PLEGQKIRVNKA 240
L+G++IRV++A
Sbjct: 269 DLDGRQIRVSEA 280
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R+YVGN+ + + L ++ E V +A V+YD+ SGRS+ F FVT + ++ AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 125 LNGTQIGGREIKVNVTE 141
L+G + GR+I+V+ E
Sbjct: 265 LDGADLDGRQIRVSEAE 281
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VGN+P + + LA + ++ VE +EV+Y++ + +SR F FVT+ TVE+A A+EK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
N ++ GR + VN + + + D+ +++YVGNL V S L+ F
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPE------RQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Query: 185 SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
SE GKV+ A+V T +S GFGFV S++ +V AI++ + LEG+ I+VN A
Sbjct: 228 SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R+YVGN+P + + L + EH V A V+ D+ +GRSR F FV + + N AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 125 LNGTQIGGREIKVNVTEK 142
L+G + GR IKVNV E+
Sbjct: 268 LDGQNLEGRAIKVNVAEE 285
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 8/189 (4%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
E+A + + +L+VGN+ + + LA + ++ VE AEV+Y++ + +SR F FVT+
Sbjct: 139 ERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 198
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-YKVYVGNL 171
+V++A A+EK N + GR + VN P + + E + V P ++VYVGNL
Sbjct: 199 SSVDEAETAVEKFNRYDLNGRLLTVNKA-APRGS------RPERAPRVYEPAFRVYVGNL 251
Query: 172 AKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLE 231
V + L+ FSE GKV+ A+V T +S GFGFVT S +++ AIS+ + LE
Sbjct: 252 PWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 311
Query: 232 GQKIRVNKA 240
G+ IRVN A
Sbjct: 312 GRAIRVNVA 320
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R+YVGN+P + N L + EH V +A V+YD+ +GRSR F FVT+ V++ N AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 125 LNGTQIGGREIKVNVTEK 142
L+G + GR I+VNV E+
Sbjct: 305 LDGQNLEGRAIRVNVAEE 322
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYV NIPR+ +L ++ Q V EV + +G SR +VT+ ++ A AI L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 126 NGTQIGGREIKV--NVTEKPLTTVDFPLVQAEESEYV--DSPYKVYVGNLAKTVTSDMLK 181
+GT++GGRE++V +V P T + ++ + + + +S +KVYVGNL D L+
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
N FS+ G ++S +V T ++ F F++F+S E+ +AA+ SFN EG++I V +
Sbjct: 230 NHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVREG 287
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
E+ ++YVGN+P D L N + + V++D+ +GR+R FAF++ + E+ +A
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 121 AIEKLNGTQIGGREIKV 137
A+ NGTQ GR I V
Sbjct: 269 ALS-FNGTQYEGRRIIV 284
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 163 PYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
P ++YV N+ ++ L + F G V+S +VSR P T +S G G+VT S + AI
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 223 SSFNNAPLEGQKIRV 237
+S + + G+++RV
Sbjct: 167 ASLDGTEVGGREMRV 181
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVM-YDKYSGRSRRFAFVTVKTVEDANAAIEK 124
LYV NIPR+ +L ++ Q V EV+ + +G SR +VT+ ++ A AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 125 LNGTQIGGREIKV--NVTEKPLTTVDFPLVQAEESEYV--DSPYKVYVGNLAKTVTSDML 180
L+GT++GGRE++V +V P T + ++ + + + +S +KVYVGNL D L
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 229
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+N FS+ G ++S +V T ++ F F++F+S E+ +AA+ SFN EG++I V +
Sbjct: 230 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVREG 288
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
E+ ++YVGN+P D L N + + V++D+ +GR+R FAF++ + E+ +A
Sbjct: 210 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 269
Query: 121 AIEKLNGTQIGGREIKV 137
A+ NGTQ GR I V
Sbjct: 270 ALS-FNGTQYEGRRIIV 285
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 53 EQAAATQ-SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVT 111
E+ TQ S R+L+V N+P +++ ++++ + + V E++ K G++R FAFVT
Sbjct: 83 EKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVT 141
Query: 112 VKTVEDANAAIEKLNGTQIGGREIKVNVTEK-----PLTTVDFPLVQAEESEYVDSPYKV 166
+ + E+A AAI+K + Q+ GR I V+ + P + D P D+ +K+
Sbjct: 142 MASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLP-----SPAPGDTRHKL 196
Query: 167 YVGNLAKTVTSDMLKNFFSEKG-KVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
YV NLA S L+ F+ +SA+V +SSG+GFV+F++ E+ E AI+
Sbjct: 197 YVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKL 256
Query: 226 NNAPLEGQKI 235
N + G+ I
Sbjct: 257 NGKEIMGRPI 266
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 59 QSEADR----RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKT 114
+S AD+ +YV N+ T+DEL ++ ++ A VM D G+SR F FV +
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFEN 274
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVG 169
EDA A+E LNG + +E V +K + + L + E D K +YV
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQK-KSERELELSRRYEQGSSDGGNKFDGLNLYVK 333
Query: 170 NLAKTVTSDMLKNFFSEKGKVLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
NL TVT + L+ F+E G + S KV R P GTSK S GFV FS+ + ++ N
Sbjct: 334 NLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS--GFVAFSAASEASRVLNEMNGK 391
Query: 229 PLEGQKIRV 237
+ G+ + V
Sbjct: 392 MVGGKPLYV 400
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L+V N+ +++ N L + +V D + G+SR + FV T + A AIEKL
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG + ++I V P ++ EE E K VYV NL++ T D LK
Sbjct: 195 NGKVLNDKQIFVG-----------PFLRKEERESAADKMKFTNVYVKNLSEATTDDELKT 243
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F + G + SA V R G KS FGFV F + ED A+ + N + ++ V KA
Sbjct: 244 TFGQYGSISSAVVMR-DGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ +T+ +L + E V V D + S + +V +DA A++KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + + G+ I++ + + S ++V NL K+V + L FS
Sbjct: 108 NYSYLNGKMIRITYSS------------RDSSARRSGVGNLFVKNLDKSVDNKTLHEAFS 155
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
G ++S KV+ +S G+GFV F +++ + AI N L ++I V
Sbjct: 156 GCGTIVSCKVA-TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 7/192 (3%)
Query: 53 EQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV 112
E+AA ++ +YV N+ T+T+D L + ++ V VM D GRSR F FV
Sbjct: 191 ERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNF 249
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP----YKVYV 168
E+A A+E L G Q+G +++ V K + L Q ++ P +YV
Sbjct: 250 CNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM-LKQKFSDNFIAKPNMRWSNLYV 308
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
NL++++ L+ F G+++SAKV +S GFGFV FS+ E+ + A N
Sbjct: 309 KNLSESMNETRLREIFGCYGQIVSAKV-MCHENGRSKGFGFVCFSNCEESKQAKRYLNGF 367
Query: 229 PLEGQKIRVNKA 240
++G+ I V A
Sbjct: 368 LVDGKPIVVRVA 379
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYV N+ ++T+ L + ++ +V+ + +G+S+ F FV T + A +A L
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+G+ + G+++ V D A + + VYV NL +TVT D L FS
Sbjct: 172 HGSMVYGKKLFV----AKFINKDERAAMAGNQDSTN----VYVKNLIETVTDDCLHTLFS 223
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ G V S V R G +S GFGFV F + E+ + A+ S L +K+ V KA
Sbjct: 224 QYGTVSSVVVMR-DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 54 QAAATQSEADR--RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVT 111
QA + R LYVG++ +T +L + + V + + +G+S +A++
Sbjct: 9 QALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYIN 68
Query: 112 VKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNL 171
+ A+ A+ +LN + + G+ +++ +++ D + + + + +YV NL
Sbjct: 69 FDSPFSASNAMTRLNHSDLKGKAMRIMWSQR-----DLAYRRRTRTGFAN----LYVKNL 119
Query: 172 AKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLE 231
++TS L+ F G +LS KV G SK GFGFV F +++ +A S+ + + +
Sbjct: 120 DSSITSSCLERMFCPFGSILSCKVVEENGQSK--GFGFVQFDTEQSAVSARSALHGSMVY 177
Query: 232 GQKIRVNK 239
G+K+ V K
Sbjct: 178 GKKLFVAK 185
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+P+ + DEL + + A VM D+ SG SR F FV + E A +A+EK+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDML 180
NG +G + V +K + + L + E E ++ K +Y+ NL +V + L
Sbjct: 290 NGISLGDDVLYVGRAQKK-SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
K FSE G V S+KV P S GFGFV +S+ E+ A+S N
Sbjct: 349 KEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMN 393
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ N L + +V D +GRS+ + FV + E A AAI+KL
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEE---SEYVDSPY--KVYVGNLAKTVTSDML 180
NG + +++ V ++ +E E +P VYV NL K + D L
Sbjct: 197 NGMLMNDKQVFVGH-----------FIRRQERARDENTPTPRFTNVYVKNLPKEIGEDEL 245
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ F + G + SA V R + S FGFV F E +A+ N L + V +A
Sbjct: 246 RKTFGKFGVISSAVVMR-DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ + L + + +V D SG+S+ + FV E A AIEKL
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG + +++ V P ++ +E + + K VYV NLA++ T D LKN
Sbjct: 185 NGMLLNDKQVYVG-----------PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F E GK+ SA V + G KS GFGFV F + +D A+ S N + ++ V +A
Sbjct: 234 AFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ + T+D+L N E+ + A VM D G+S+ F FV + +DA A+E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEES--EYVD--SPYKVYVGNLAKTVTSDMLK 181
NG + +E V +K V+ E++ E D +YV NL +++ + LK
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 182 NFFSEKGKVLSAKVSRVP-GTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
FS G V S+KV R P GTSK S GFV F++ E+ A+S + +E + + V
Sbjct: 336 EIFSPFGTVTSSKVMRDPNGTSKGS--GFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 55 AAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKT 114
A ATQ + LYVG++ +T+ +L + + V V D + RS + +V
Sbjct: 28 ATATQF-GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTN 86
Query: 115 VEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKT 174
+DA AI++LN + G+ I+V + + + S +++ NL ++
Sbjct: 87 PQDAARAIQELNYIPLYGKPIRVMYSHR------------DPSVRRSGAGNIFIKNLDES 134
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
+ L + FS G ++S KV+ V + +S G+GFV ++++E + AI N L ++
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 235 IRV 237
+ V
Sbjct: 194 VYV 196
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+P+ +T+DEL ++ + A VM D+ SG SR F FV + E A A+EK+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDML 180
NG +G + V +K + + L + E E + K +Y+ NL +V + L
Sbjct: 300 NGISLGEDVLYVGRAQK-KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
K FSE G V S KV + S GFGFV +S+ E+ A+ N
Sbjct: 359 KEMFSEYGNVTSCKV-MMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
Q+ + LYVG++ ++ L ++ + A V V D + RS +A+V EDA
Sbjct: 54 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDA 112
Query: 119 NAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
+ A+E LN I R I++ ++ + + S + V++ NL ++ +
Sbjct: 113 SRAMESLNYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNK 160
Query: 179 MLKNFFSEKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
L FS G +LS KV+ V G SK G+GFV F +E +AAI N L +++ V
Sbjct: 161 ALYETFSSFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ N L + +V D GRS+ + FV + E A AAI+KL
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
NG + +++ V + ES V S VYV NL K +T D LK F
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRA------RSESGAVPSFTNVYVKNLPKEITDDELKKTFG 260
Query: 186 EKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ G + SA V + G S+S FGFV F S E A+ N L + V +A
Sbjct: 261 KYGDISSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+P+ +T+DEL ++ + A VM D+ SG SR F FV + E A A+EK+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDML 180
NG +G + V +K + + L + E E + K +Y+ NL +V + L
Sbjct: 300 NGISLGEDVLYVGRAQK-KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
K FSE G V S KV + S GFGFV +S+ E+ A+ N
Sbjct: 359 KEMFSEYGNVTSCKV-MMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
Q+ + LYVG++ ++ L ++ + A V V D + RS +A+V EDA
Sbjct: 54 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDA 112
Query: 119 NAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
+ A+E LN I R I++ ++ + + S + V++ NL ++ +
Sbjct: 113 SRAMESLNYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNK 160
Query: 179 MLKNFFSEKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
L FS G +LS KV+ V G SK G+GFV F +E +AAI N L +++ V
Sbjct: 161 ALYETFSSFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ ++ N L + +V D GRS+ + FV + E A AAI+KL
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
NG + +++ V + ES V S VYV NL K +T D LK F
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRA------RSESGAVPSFTNVYVKNLPKEITDDELKKTFG 260
Query: 186 EKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ G + SA V + G S+S FGFV F S E A+ N L + V +A
Sbjct: 261 KYGDISSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ ++T L + E ++ + D SGRS + + + +DAN AIEK
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + + G+ I+V + +V P + + V+V NL ++VT+ +L++ F
Sbjct: 86 NNSLLNGKMIRV------MWSVRAPDARR------NGVGNVFVKNLPESVTNAVLQDMFK 133
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNK 239
+ G ++S KV+ + KS G+GFV F ++ AAI + N+ + ++I V K
Sbjct: 134 KFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LY+ N+ ++ D L E + + D+ + R +AFV EDA A E +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQ----AEESEYVDSPYKVYVGNLAKTVTSDMLK 181
NGT+ G + + V +K Q EE + + +YV N+ VT + L+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
FS+ G + S K+ KS GFGFV FS+ E+ A+ +F+ G+ + V
Sbjct: 322 KHFSQCGTITSTKL-MCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L ++ A VM+D+ +GRSR F FV+ + +DA AI ++
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPL--------------------VQAEESEYVDSPY- 164
NG + R+I+ N K T+ D L EE+ +S +
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
VYVGNLA VT L +F G + +V RV + GFGFV +++ + AI
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEV-RV---QRDKGFGFVRYNTHPEAALAIQM 321
Query: 225 FNNAP 229
N P
Sbjct: 322 GNTQP 326
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMY-DKYSGRSRRFAFVTVKTVEDANAAI 122
R +YVGNI +T L I VE ++++ DK S + FV A AI
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAI 113
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
LNG + G+ IKVN + Q E++ S + ++VG+L+ VT L
Sbjct: 114 LSLNGRHLFGQPIKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDATLYQ 162
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS A+V T +S GFGFV+F + +D + AI+ N L ++IR N A
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 24/183 (13%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV-------KTVED 117
++++G + + TN ++ + + +M D+++G+ R F F+T K +ED
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
+ +NG Q+ EIK + + +S+ + + K++VG + TVT
Sbjct: 80 THV----INGKQV---EIKRTIPKG---------AGGNQSKDIKT-KKIFVGGIPSTVTE 122
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
D LK+FF++ G V+ +V R T++S GFGFV F S+E V+ +S N + ++ +
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
Query: 238 NKA 240
KA
Sbjct: 183 KKA 185
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + A VM+D+ +GRSR F FV+ + +DA AI+++
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 126 NGTQIGGREIKVNVTEKPLTT------------VDFPLVQAEESEYVDSP------YKVY 167
G +G R+I+ N K T+ V+ +++ ++P VY
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVY 260
Query: 168 VGNLAKTVTS-DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
VGNLA V+ D+ ++F S L A V + GFGFV +S+ + AI N
Sbjct: 261 VGNLAPEVSQVDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGN 315
Query: 227 -NAPLEGQKIRVN 238
++ L G++++ +
Sbjct: 316 THSYLSGRQMKCS 328
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R +YVGNI +T L + VE +++ + S + FV A AI
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAIL 109
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
LNG + G+ IKVN + + E S + ++VG+L+ VT ML
Sbjct: 110 SLNGRHLFGQPIKVNWA-----------YASGQREDTSSHFNIFVGDLSPEVTDAMLFTC 158
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS A+V T +S GFGFV+F + +D + AI L ++IR N A
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV-------KTVED 117
+++VG + R T+ E ++ + + +M D+ +G+ R F FVT K ++D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
+ I G Q+ EIK + +++ DF K++VG + +V
Sbjct: 103 NHIII----GKQV---EIKRTIPRGSMSSNDF------------KTKKIFVGGIPSSVDD 143
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
D K FF + G++ ++ R T +S GFGFVT+ S++ V+ ++ N L G ++ +
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Query: 238 NKA 240
KA
Sbjct: 204 KKA 206
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 45/78 (57%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
++++VG IP ++ +DE + +++ ++M D +GRSR F FVT ++ + + +
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 124 KLNGTQIGGREIKVNVTE 141
K N ++ G ++++ E
Sbjct: 190 KGNRIELSGTQVEIKKAE 207
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +YVG + L+ + L + + V V D+ + + + F+ ++ EDA+ AI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
+ LN ++ G+ I+VN +++ + +D +++GNL V +L +
Sbjct: 84 KVLNMIKLHGKPIRVNKA-------------SQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
Query: 183 FFSEKGKVLS-AKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS G + S K+ R P T S GFGF+++ S E +AAI S L ++I V+ A
Sbjct: 131 TFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++YVGNL+ V L+N F+E+GKV+ A+V + +S GFGFVT SS ++V+ AI+S
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 225 FNNAPLEGQKIRVNKA 240
N A L+G++IRV++A
Sbjct: 339 LNGADLDGRQIRVSEA 354
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RLYVGN+ + + L N+ E V +A V+YD+ SGRS+ F FVT+ + ++ AI
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 125 LNGTQIGGREIKVNVTE 141
LNG + GR+I+V+ E
Sbjct: 339 LNGADLDGRQIRVSEAE 355
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN+ + + +LA + + VE EV+YDK +GRSR F FVT+ T + AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 123 EKLNG 127
++ NG
Sbjct: 158 QQFNG 162
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTV-------KTVED 117
++++G + + TN ++ + + +M D+++G+ R F F+T K +ED
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
+ +NG Q+ EIK + + +S+ + + K++VG + TVT
Sbjct: 80 THV----INGKQV---EIKRTIPKG---------AGGNQSKDIKTK-KIFVGGIPSTVTE 122
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
D LK+FF++ G V+ +V R T++S GFGFV F S+E V+ +S N + ++ +
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSL 182
Query: 238 NK 239
K
Sbjct: 183 YK 184
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++YVGNL+ V L+N F+E+GKV+ A+V + +S GFGFVT SS ++V+ AI+S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 225 FNNAPLEGQKIRVNKA 240
N A L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RLYVGN+ + + L N+ E V +A V+YD+ SGRS+ F FVT+ + ++ AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 LNGTQIGGREIKVNVTE 141
LNG + GR+I+V+ E
Sbjct: 318 LNGADLDGRQIRVSEAE 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN+ + + +LA + + VE EV+YDK +GRSR F FVT+ T + AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 123 EKLNGTQIGGREIKVNVTEKP 143
++ NG + GR ++VN P
Sbjct: 158 QQFNGYEFEGRPLRVNAGPPP 178
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K++VGNL+ V S L F G V +V T +S GFGFVT S+ +VEAA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 225 FNNAPLEGQKIRVN 238
FN EG+ +RVN
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++YVGNL+ V L+N F+E+GKV+ A+V + +S GFGFVT SS ++V+ AI+S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 225 FNNAPLEGQKIRVNKA 240
N A L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RLYVGN+ + + L N+ E V +A V+YD+ SGRS+ F FVT+ + ++ AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 LNGTQIGGREIKVNVTE 141
LNG + GR+I+V+ E
Sbjct: 318 LNGADLDGRQIRVSEAE 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN+ + + +LA + + VE EV+YDK +GRSR F FVT+ T + AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 123 EKLNGTQIGGREIKVNVTEKP 143
++ NG + GR ++VN P
Sbjct: 158 QQFNGYEFEGRPLRVNAGPPP 178
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K++VGNL+ V S L F G V +V T +S GFGFVT S+ +VEAA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 225 FNNAPLEGQKIRVN 238
FN EG+ +RVN
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++YVGNL+ V L+N F+E+GKV+ A+V + +S GFGFVT SS ++V+ AI+S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 225 FNNAPLEGQKIRVNKA 240
N A L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RLYVGN+ + + L N+ E V +A V+YD+ SGRS+ F FVT+ + ++ AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 125 LNGTQIGGREIKVNVTE 141
LNG + GR+I+V+ E
Sbjct: 318 LNGADLDGRQIRVSEAE 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
D +L+VGN+ + + +LA + + VE EV+YDK +GRSR F FVT+ T + AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 123 EKLNGTQIGGREIKVNVTEKP 143
++ NG + GR ++VN P
Sbjct: 158 QQFNGYEFEGRPLRVNAGPPP 178
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K++VGNL+ V S L F G V +V T +S GFGFVT S+ +VEAA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 225 FNNAPLEGQKIRVN 238
FN EG+ +RVN
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RL N+P T T +++ ++ +++ +V E+ K R+R F+ + + E+A A++
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKS 93
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
L + GR +KV+ + P E+ + ++V NLA + LK FF
Sbjct: 94 LESCEYEGRRLKVDYAKTKKKKTYAP----RETPSPVPTFNLFVANLAFEARAKHLKEFF 149
Query: 185 -SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
++ G V+S +V +SSG+GFV+F + + EAA+ F G+ IR+ K+
Sbjct: 150 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKS 206
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RL N+P T T +++ ++ +++ +V E+ K R+R F+ + + E+A A++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE-RNRGLVFIEMASPEEAATALKS 153
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
L + GR +KV+ + P E+ + ++V NLA + LK FF
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAP----RETPSPVPTFNLFVANLAFEARAKHLKEFF 209
Query: 185 -SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
++ G V+S +V +SSG+GFV+F + + EAA+ F G+ IR+ K+
Sbjct: 210 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKS 266
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ T T+ +L + E + A VM D G+SRRF FV + E A AIEK+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 126 NGTQIGGREIKVNVTEKPLTTVD-----FPLVQAEESEYVDSPYKVYVGNLAKTVTSDML 180
NG + +E+ V ++ + F L + +YV NL +V + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ FSE G + S KV V S G GFV FS+ E+ A+ N + + I V+ A
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
+E LN ++ G+ +++ +E+ + S + V+V NL +++ + L
Sbjct: 1 MEVLNYCKLKGKPMRIMFSER------------DPSNRMSGRGNVFVKNLDESIDNKQLC 48
Query: 182 NFFSEKGKVLSAKVSR-VPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ FS GKVLS KV+R G SK G+GFV F SD V A + N + Q I V
Sbjct: 49 DMFSAFGKVLSCKVARDASGVSK--GYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ +L+++EL + E +M D G+S+ F FV + +DA A++ L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDML 180
NG +E V +K + + L Q E ++ K +YV NL ++VT D L
Sbjct: 285 NGKTFDDKEWFVGKAQK-KSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
+ F+ G + S KV R P + S G GFV FS+ E+ AI+ N
Sbjct: 344 REHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ T+T+ +L + V V D + RS + +V T +DA+ A+ +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + GR I+V + +V P ++ +++ NL K++ L FS
Sbjct: 107 NFMALNGRAIRV------MYSVRDPSLRKSGVG------NIFIKNLDKSIDHKALHETFS 154
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
G +LS KV+ P + +S G+GFV + +DE + AI N L +++ V
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ +++ + L + +V D SG+S+ + FV T E A AI+KL
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG + +++ V P V + + K VYV NL+++++ + L
Sbjct: 194 NGMLLNDKQVYVG-----------PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNK 242
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F E G S + R G KS GFGFV F + +D A+ + N + ++ V KA
Sbjct: 243 VFGEFGVTTSCVIMR-DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+YV N+ +L+++EL + E +M D G+S+ F FV + +DA A++ L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK-----VYVGNLAKTVTSDML 180
NG +E V +K + + L Q E ++ K +YV NL ++VT D L
Sbjct: 285 NGKTFDDKEWFVGKAQK-KSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
+ F+ G + S KV R P + S G GFV FS+ E+ AI+ N
Sbjct: 344 REHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 13/172 (7%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
LYVG++ T+T+ +L + V V D + RS + +V T +DA+ A+ +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
N + GR I+V + +V P ++ +++ NL K++ L FS
Sbjct: 107 NFMALNGRAIRV------MYSVRDPSLRKSGVG------NIFIKNLDKSIDHKALHETFS 154
Query: 186 EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
G +LS KV+ P + +S G+GFV + +DE + AI N L +++ V
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++ N+ +++ + L + +V D SG+S+ + FV T E A AI+KL
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK---VYVGNLAKTVTSDMLKN 182
NG + +++ V P V + + K VYV NL+++++ + L
Sbjct: 194 NGMLLNDKQVYVG-----------PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNK 242
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F E G S + R G KS GFGFV F + +D A+ + N + ++ V KA
Sbjct: 243 VFGEFGVTTSCVIMR-DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R +YVGNI +T L + VE +++ + S + FV A AI
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAIL 109
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
LNG + G+ IKVN + + E S + ++VG+L+ VT ML
Sbjct: 110 SLNGRHLFGQPIKVNWA-----------YASGQREDTSSHFNIFVGDLSPEVTDAMLFTC 158
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS A+V T +S GFGFV+F + +D + AI L ++IR N A
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 32/198 (16%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + A VM+D+ +GRSR F FV+ + +DA AI+++
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYV-----------------DSP----- 163
G +G R+I+ N K T+ + Q+ +S+ V ++P
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGE--DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQ 258
Query: 164 -YKVYVGNLAKTVTS-DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
VYVGNLA V+ D+ ++F S L A V + GFGFV +S+ + A
Sbjct: 259 YTTVYVGNLAPEVSQVDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHVEAALA 313
Query: 222 ISSFN-NAPLEGQKIRVN 238
I N ++ L G++++ +
Sbjct: 314 IQMGNTHSYLSGRQMKCS 331
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
++VG++ +T+ L + + A VM+D+ +GRSR F FV+ + +DA AI ++
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 126 NGTQIGGREIKVNVTEKPLT------------TVDFPLVQAEESEYV---DSP------Y 164
NG + R+I+ N K T V+ +E+ + D+P
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFT 269
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
VYVGNL+ VT L F G + +V RV + GFGFV +++ ++ AI
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEV-RV---QRDKGFGFVRYNTHDEAALAIQM 325
Query: 225 FNNAP-LEGQKIRVN 238
N P L ++IR +
Sbjct: 326 GNAQPFLFSRQIRCS 340
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMY-DKYSGRSRRFAFVTVKTVEDANAAI 122
R +Y GNI +T L I +E +++ DK S + FV A+ AI
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAI 117
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
LNG I G+ +KVN + Q E++ S + ++VG+L+ VT L +
Sbjct: 118 MTLNGRHIFGQPMKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDAALFD 166
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS A+V T +S GFGFV+F + +D + AI+ N + ++IR N A
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
+VYVGNL+ T T DML+ FS G V+ A V R T +S GFGFVT+SS + EAA+S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 225 FNNAPLEGQKIRV 237
+ L G+++ V
Sbjct: 64 MDGKELNGRRVSV 76
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R+YVGN+ T T+D L + V A VM D+Y+ RSR F FVT + +A AA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 125 LNGTQIGGREIKVNV 139
++G ++ GR + V +
Sbjct: 64 MDGKELNGRRVSVKL 78
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 30/199 (15%)
Query: 66 LYVGNIPRTLTN----DELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
++VG++ +T+ D + + A VM+D+ +GRSR F FV+ + +DA A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 122 IEKLNGTQIGGREIKVNVTEKPLT------------TVDFPLVQAEESEYV---DSP--- 163
I ++NG + R+I+ N K T V+ +E+ + D+P
Sbjct: 210 INEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENN 269
Query: 164 ---YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
VYVGNL+ VT L F G + +V RV + GFGFV +++ ++
Sbjct: 270 PQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEV-RV---QRDKGFGFVRYNTHDEAAL 325
Query: 221 AISSFNNAP-LEGQKIRVN 238
AI N P L ++IR +
Sbjct: 326 AIQMGNAQPFLFSRQIRCS 344
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMY-DKYSGRSRRFAFVTVKTVEDANAAI 122
R +Y GNI +T L I +E +++ DK S + FV A+ AI
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAI 117
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
LNG I G+ +KVN + Q E++ S + ++VG+L+ VT L +
Sbjct: 118 MTLNGRHIFGQPMKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDAALFD 166
Query: 183 FFSEKGKVLS----AKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
FS S A+V T +S GFGFV+F + +D + AI+ N + ++IR N
Sbjct: 167 SFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 226
Query: 239 KA 240
A
Sbjct: 227 WA 228
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L++ + + +V+ A+V+ D+ +GRS+ + FV + A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 122 IEKLNGTQIGGREIKV----NVTEKPLTTVDFPLVQAEESEYVD-SPYKVYVGNLAKTVT 176
+ ++NG R +++ N P+ + Q + D + ++VG L VT
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIR 236
D LK+ F + G++L K+ PG GFV +++ E A+S N L GQ IR
Sbjct: 273 DDELKSIFGQFGELLHVKIP--PGKR----CGFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 237 V 237
+
Sbjct: 327 L 327
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
+ L++G++ + + + + ++ + A+V+ +K +G+S + F+ + A ++
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 124 KLNGTQIGGRE--IKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
NG + E ++N + F ++E D + ++VG+LA VT ML
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRF------QTEGPD--HTIFVGDLAPEVTDYMLS 171
Query: 182 NFFSE-KGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
+ F G V AKV T +S G+GFV F+ + + A++ N + +R+ A
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 66 LYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
++VG++ +T+ L + +++V+ A+V+ D+ +GRS+ + FV + A+ +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 125 LNGTQIGGREIKVN--VTEKPLT--TVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDML 180
+NG R ++ +KPLT + Q E + ++VG + ++VT D L
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 181 KNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
K+ F + G+++ K +P + GFV +++ E A+S N L GQ IR+
Sbjct: 295 KSVFGQFGELVHVK---IPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRL 345
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 8/178 (4%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L N+ A+V+ +K +G S + F+ A ++
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDML-KN 182
NG + E + L + QAE E+ V+VG+LA VT ML +
Sbjct: 140 TYNGAPMPSSEQAFRLNWAQLGAGE--RRQAEGPEHT-----VFVGDLAPDVTDHMLTET 192
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F + V AKV T +S G+GFV F+ + + A++ N + +R A
Sbjct: 193 FKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPA 250
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEH-AAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + H ++V A+V+ D +GRS+ + FV + N A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 122 IEKLNGTQIGGREIK---------VNVTEKPLTTVDFP-LVQAEESEYVDSP------YK 165
+ ++NG R ++ V V ++ +T V P V A YV P
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTT 234
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+ V NL + VT + LK FS+ G+V+ K +P T G+G+V F + E A+
Sbjct: 235 ISVANLDQNVTEEELKKAFSQLGEVIYVK---IPAT---KGYGYVQFKTRPSAEEAVQRM 288
Query: 226 NNAPLEGQKIRVN 238
+ Q +R++
Sbjct: 289 QGQVIGQQAVRIS 301
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + + + +V+ +K +G+ + F+ + A ++
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
NGTQ+ G E+ L F Q ++ + ++VG+LA VT +L+
Sbjct: 84 TYNGTQMPGTELTFR-----LNWASFGSGQKVDA---GPDHSIFVGDLAPDVTDYLLQET 135
Query: 184 FS-EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F V AKV P T +S G+GFV F+ + + A++ N + +R++ A
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 12/164 (7%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG++PRT T +E+ ++H V + ++ DK +G+ + FV T +DA+ AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 125 L-NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
L N + G V V E +K++VG+L K T ++
Sbjct: 181 LHNQITLPGGTGPVQVR----------YADGERERIGTLEFKLFVGSLNKQATEKEVEEI 230
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNN 227
F + G V + R +S G GFV +SS E AAI N
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG++PRT T +E+ ++H V + ++ DK +G+ + FV T +DA+ AI
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 125 L-NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
L N + G V V E +K++VG+L K T ++
Sbjct: 106 LHNQITLPGGTGPVQVR----------YADGERERIGTLEFKLFVGSLNKQATEKEVEEI 155
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
F + G V + R +S G GFV +SS E AAI N
Sbjct: 156 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLN 197
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
+R+L V IP + +D L + + + +E VM D+ +GRSR F +VT + EDA A
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA- 60
Query: 123 EKLNGTQ-IGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTS 177
L G +G R ++V V A E + P K ++V + +V+
Sbjct: 61 --LKGEHFLGNRILEVKV--------------ATPKEEMRQPAKKVTRIFVARIPSSVSE 104
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
++ F G++ + + + + G GF+TFSS + VE + ++ L G + V
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAV 162
Query: 238 NKA 240
++A
Sbjct: 163 DRA 165
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI 122
+R+L V IP + +D L + + + +E VM D+ +GRSR F +VT + EDA A
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA- 60
Query: 123 EKLNGTQ-IGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK----VYVGNLAKTVTS 177
L G +G R ++V V A E + P K ++V + +V+
Sbjct: 61 --LKGEHFLGNRILEVKV--------------ATPKEEMRQPAKKVTRIFVARIPSSVSE 104
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
++ F G++ + + + + G GF+TFSS + VE + ++ L G + V
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD--LGGTTVAV 162
Query: 238 NKA 240
++A
Sbjct: 163 DRA 165
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 9/176 (5%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG + T + AN + V + +M D+ +G R F FVT A +E+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
+ I R++ + T P D + ++ K++VG L + D LKN+F
Sbjct: 127 DH--VIDDRKVDLKRT-LPRGDKDTDIKAVSKTR------KIFVGGLPPLLEEDELKNYF 177
Query: 185 SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
G ++ ++ T +S GFGFVTF +++ V+ S L +++ + +A
Sbjct: 178 CVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+++VG +P L DEL N + + + ++MYD ++GRSR F FVT +T + +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVD 148
++G +++++ E T D
Sbjct: 217 DGKVHELGDKQVEIKRAEPKRTGRD 241
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQEH-AAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + H ++V A+V+ D +GRS+ + FV + N A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 122 IEKLNGTQIGGREIK---------VNVTEKPLTTVDFPL-----VQAEESEYVDSP---- 163
+ ++NG R ++ V V ++ +T +P+ V A YV P
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 164 --YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
+ V NL + VT + LK FS+ G+V+ K +P T G+G+V F + E A
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVK---IPAT---KGYGYVQFKTRPSAEEA 288
Query: 222 ISSFNNAPLEGQKIRVN 238
+ + Q +R++
Sbjct: 289 VQRMQGQVIGQQAVRIS 305
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R L++G++ + + L + + + +V+ +K +G+ + F+ + A ++
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
NGTQ+ G E+ L F Q ++ + ++VG+LA VT +L+
Sbjct: 84 TYNGTQMPGTELTFR-----LNWASFGSGQKVDA---GPDHSIFVGDLAPDVTDYLLQET 135
Query: 184 FS-EKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F V AKV P T +S G+GFV F+ + + A++ N + +R++ A
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 60.8 bits (146), Expect = 8e-10, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG++PRT T +E+ ++H V + ++ DK +G+ + FV T +DA+ AI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
L+ +I + P V E +K++VG+L K T ++ F
Sbjct: 181 LHN------QITLPGGTGP---VQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIF 231
Query: 185 SEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
+ G V + R +S G GFV +SS E AAI N
Sbjct: 232 LQFGHVEDVYLMR-DEYRQSRGCGFVKYSSKETAMAAIDGLN 272
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 77/149 (51%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR + ++L ++ +E + + +M D+ SG S+ +AFV KT + A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ I+ +++E + ++++GN+ K T D +
Sbjct: 178 HSKEFKGKTIRCSLSE--------------------TKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
+ G V + ++ + P T+++ GF FV +
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKY-SGRSRRFAFVTVKTVED 117
SE RL++GNIP+ T DE ++++ VE E++ D + R+R FAFV
Sbjct: 192 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNAC 251
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
A+ + +K+ + +++ N P T P E S +YV N+ + ++
Sbjct: 252 ADYSRQKMIDSNF---KLEGNA---PTVTWADPKSSPEHSAAAAQVKALYVKNIPENTST 305
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ LK F G+V K+ PG FGFV ++ A+ + GQ + V
Sbjct: 306 EQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 77/149 (51%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR + ++L ++ +E + + +M D+ SG S+ +AFV KT + A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ I+ +++E + ++++GN+ K T D +
Sbjct: 178 HSKEFKGKTIRCSLSE--------------------TKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
+ G V + ++ + P T+++ GF FV +
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKY-SGRSRRFAFVTVKTVED 117
SE RL++GNIP+ T DE ++++ VE E++ D + R+R FAFV
Sbjct: 192 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNAC 251
Query: 118 ANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTS 177
A+ + +K+ + +++ N P T P E S +YV N+ + ++
Sbjct: 252 ADYSRQKMIDSNF---KLEGNA---PTVTWADPKSSPEHSAAAAQVKALYVKNIPENTST 305
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
+ LK F G+V K+ PG FGFV ++ A+ + GQ + V
Sbjct: 306 EQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
++E +L+VG +P+ +T +L + +E + V + ++ +K + R F+T T EDA
Sbjct: 7 ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66
Query: 119 NAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPL-VQAEESEYVDSPYKVYVGNLAKTVTS 177
+ I + +K L PL V+ + E +K++VG L K V+
Sbjct: 67 DKVINSFH-------------NKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSE 113
Query: 178 DMLKNFFSEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
+++ FSE G + ++ R G+ ++S G F+ + S E AA+ + N
Sbjct: 114 TEVQSLFSEYGTIKDLQILR--GSLQTSKGCLFLKYESKEQAVAAMEALN 161
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
T+ A L++ NIPR + ELA Q V A+V DK +G S+ F F++ +
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 118 ANAAIEKLNGTQIGGREIKVNV 139
A AI +NG Q+ G+++KV +
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQL 405
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG I D+L + V +A VM DK +GR R F FV + +++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 125 LNGTQIGGREIKVNVT----EKPLT--TVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSD 178
+ I RE+ V E+ ++ T + ++ + + K++VG L T+T +
Sbjct: 67 KH--SIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 179 MLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLEGQKIRV 237
+ +F G V + T++ GFGFV+F S++ V++ + +F++ L G+++ V
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHD--LSGKQVEV 182
Query: 238 NKA 240
+A
Sbjct: 183 KRA 185
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 34/151 (22%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR + ++L ++ +E + + +M D+ SG S+ +AFV KT + A AIE+L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ + G+ I+ +++E + ++++GN+ K T D +
Sbjct: 158 HSKEFKGKTIRCSLSE--------------------TKNRLFIGNIPKNWTEDEFRKVIE 197
Query: 186 EKGKVLSAKVSRVPG----TSKSSGFGFVTF 212
+ G PG T+++ GF FV +
Sbjct: 198 DVG----------PGDPTNTTRNRGFAFVLY 218
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SE RL++GNIP+ T DE ++++ + R+R FAFV A+
Sbjct: 172 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPTNTT------RNRGFAFVLYYNNACAD 225
Query: 120 AAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDM 179
+ +K+ + +++ N P T P E S +YV N+ + +++
Sbjct: 226 YSRQKMIDSNF---KLEGNA---PTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 279
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
LK F G+V K+ PG FGFV ++ A+ + GQ + V
Sbjct: 280 LKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 335
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA L+ F++ G V+ +K+ T +S GFGFVTF ++ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI N L+G+ I VN+A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R +VG + + L ++ V ++++ D+ +GRSR F FVT K + AIE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 125 LNGTQIGGREIKVN 138
+NG + GR I VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ +VG LA L+ F++ G V+ +K+ T +S GFGFVTF ++ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI N L+G+ I VN+A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R +VG + + L ++ V ++++ D+ +GRSR F FVT K + AIE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 125 LNGTQIGGREIKVN 138
+NG + GR I VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
T+ A L++ NIPR + ELA Q V A+V DK +G S+ F F++ +
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 118 ANAAIEKLNGTQIGGREIKVNV 139
A AI +NG Q+ G+++KV +
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQL 414
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 59 QSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDA 118
++E +L+VG +P+ +T +L + +E + V + ++ +K + R F+T T EDA
Sbjct: 7 ENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDA 66
Query: 119 NAAIEKLNGTQI---GGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTV 175
+ I + + ++V + L +D ++ + +K++VG L K V
Sbjct: 67 DKVINSFHNKKTLPGASSPLQVKYADGELERLD--VLDCS----CNPEHKLFVGMLPKNV 120
Query: 176 TSDMLKNFFSEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
+ +++ FSE G + ++ R G+ ++S G F+ + S E AA+ + N
Sbjct: 121 SETEVQSLFSEYGTIKDLQILR--GSLQTSKGCLFLKYESKEQAVAAMEALN 170
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 61 EADR-RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFV-------TV 112
+ DR +L+VG I + + + L + AV +A V +K +G+ R F FV V
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 113 KTVEDANAAIEK-------LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYK 165
K + D + + K + ++ + + E+ + ++ L + + K
Sbjct: 62 KALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKK 121
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
++VG L+ T + K++F G+ V T++ GFGFVT+ S++ VE + S
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS- 180
Query: 226 NNAPLEGQKIRVNKA 240
N L +++ V +A
Sbjct: 181 NFHELSDKRVEVKRA 195
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 58 TQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVED 117
T+ L++ NIPR + ELA Q V A+V DK +G S+ F FV+ +
Sbjct: 343 TEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAA 402
Query: 118 ANAAIEKLNGTQIGGREIKVNV 139
A AI+ +NG +GG+++KV +
Sbjct: 403 AQNAIDMMNGRHLGGKKLKVQL 424
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG IP+ ++ +L + QE A V++ ++ DK + SR F+ + E+A+ +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPL-VQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
+ +K L + L V+ + E +K++VG L K V+ +++
Sbjct: 79 CH-------------NKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSL 125
Query: 184 FSEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
FS+ G + ++ R G ++S G F+ + + E +A+ S N
Sbjct: 126 FSKYGTIKDLQILR--GAQQTSKGCAFLKYETKEQAVSAMESIN 167
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVT------------V 112
+L++G I + D L + V +A +M D+ +GR+R F FV +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 113 KTVEDANAAIEKLNGTQIGGREIKVNVTE-----KPLTTVDFPLVQAEESEYVDSP---- 163
K + D ++ + Q+ + ++++E K + D + S SP
Sbjct: 67 KHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN 126
Query: 164 -YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
K++VG LA +VT K +F++ G + V T + GFGF+++ S+E V+ +
Sbjct: 127 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 186
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 65 RLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKY-SGRSRRFAFVTVKTVEDANAAI 122
RL++GNIP+ T DE ++++ VE E++ D + R+R FAFV A+ +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 123 EKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKN 182
+K+ + +++ N P T P E S +YV N+ + +++ LK
Sbjct: 257 QKMIDSNF---KLEGNA---PTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKE 310
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRV 237
F G+V K+ PG FGFV ++ A+ + GQ + V
Sbjct: 311 LFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+++G +PR + ++L ++ +E + + +M D+ SG S+ +AFV KT + A AIE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 126 NGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFS 185
+ +E K + T L ++++GN+ K T D +
Sbjct: 178 H-----SKEFKASST----ANCSLSLSN-----------RLFIGNIPKNWTEDEFRKVIE 217
Query: 186 EKGK-VLSAKVSRVP-GTSKSSGFGFVTF 212
+ G V + ++ + P T+++ GF FV +
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + + V +A +M D+ +GR+R F F+ A+ + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-----ADPCVSE 61
Query: 125 ---LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY--------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 62 RVIMDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T + KN+F + G + V T + GFGF+TF SD+ V+ + +F+ L
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHE--LN 176
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 177 GKLVEVKRA 185
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + + V +A +M D+ +GR+R F F+ A+ + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-----ADPCVSE 61
Query: 125 ---LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY--------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 62 RVIMDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T + KN+F + G + V T + GFGF+TF SD+ V+ + +F+ L
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHE--LN 176
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 177 GKLVEVKRA 185
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQ-EHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + + +V+ A+V+ D+ +GR++ + FV + A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 122 IEKLNGTQIGGREIKVN--VTEKPLTTVDFPLVQAEESEYVDSP-----------YKVYV 168
+ ++NG R +++ ++K +T + Y S V+V
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVT--------GQRDSYQSSAAGVTTDNDPNNTTVFV 265
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
G L +VT D LKN FS+ G+++ K +P + GFV FS E A+ N
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVK---IPAGKRC---GFVQFSEKSCAEEALRMLNGV 319
Query: 229 PLEGQKIRVN 238
L G +R++
Sbjct: 320 QLGGTTVRLS 329
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+++G+L + + L F+ G+++SAKV R T + G+GF+ F+S E + +F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 226 NNAPLEG---QKIRVNKA 240
NNAP+ Q R+N A
Sbjct: 124 NNAPIPSFPDQLFRLNWA 141
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 54 QAAATQS----EAD--RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRF 107
QAAA S AD R L++G++ + + L + A+V+ +K +G+ +
Sbjct: 46 QAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGY 105
Query: 108 AFVTVKTVEDANAAIEKLNGTQIGG---REIKVNVTEKPLTTVDFPLVQAEESEYVDSP- 163
F+ + A ++ N I + ++N L ++ + DSP
Sbjct: 106 GFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS---------LSSGDKRD--DSPD 154
Query: 164 YKVYVGNLAKTVTSD-MLKNFFSEKGKVLSAKV--SRVPGTSKSSGFGFVTFSSDEDVEA 220
Y ++VG+LA VT +L+ F + V AKV RV T ++ G+GFV FS + +
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRV--TGRTKGYGFVRFSDESEQIR 212
Query: 221 AISSFNNAPLEGQKIRVNKA 240
A++ N P + +R+ A
Sbjct: 213 AMTEMNGVPCSTRPMRIGPA 232
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + D L + V +A +M D+ +GR+R F FV D N A
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA---DPNVAERV 63
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-----YKVYVGNLAKTVTSDM 179
+ I + K+ +K + D + S SP K++VG LA +VT
Sbjct: 64 VLLKHI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
K +F++ G + V T + GFGF+++ S+E V+ +
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 164
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + D L + V +A +M D+ +GR+R F FV D N A
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA---DPNVAERV 63
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-----YKVYVGNLAKTVTSDM 179
+ I + K+ +K + D + S SP K++VG LA +VT
Sbjct: 64 VLLKHI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 180 LKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
K +F++ G + V T + GFGF+++ S+E V+ +
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 164
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + + V +A +M D+ +GR+R F F+ A+ + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-----ADPCVSE 61
Query: 125 ---LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY--------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 62 RVIMDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T + KN+F + G + V T + GFGF+TF SD+ V+ + +F+ L
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHE--LN 176
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 177 GKLVEVKRA 185
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L + + V +A +M D+ +GR+R F F+ A+ + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-----ADPCVSE 61
Query: 125 ---LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY--------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 62 RVIMDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T + KN+F + G + V T + GFGF+TF SD+ V+ + +F+ L
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHE--LN 176
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 177 GKLVEVKRA 185
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 163 PYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
Y+ +VG LA + L+ FS+ G V+ +K+ + +S GFGFVTF ++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 223 SSFNNAPLEGQKIRVNKA 240
N L+G+ I VN+A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SE + R +VG + +++L + V ++++ D+ SGRSR F FVT K +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 120 AAIEKLNGTQIGGREIKVN 138
AIE++NG ++ GR I VN
Sbjct: 62 DAIEEMNGKELDGRVITVN 80
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 163 PYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
Y+ +VG LA + L+ FS+ G V+ +K+ + +S GFGFVTF ++ + AI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 223 SSFNNAPLEGQKIRVNKA 240
N L+G+ I VN+A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SE + R +VG + +++L + V ++++ D+ SGRSR F FVT K +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 120 AAIEKLNGTQIGGREIKVN 138
AIE++NG ++ GR I VN
Sbjct: 62 DAIEEMNGKELDGRVITVN 80
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G + ++ D L ++ V V+ D+ +GRSR F FVT + E A++AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 125 LNGTQIGGREIKVN 138
L+G + GR +KVN
Sbjct: 101 LDGRDLHGRVVKVN 114
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K+++G +A ++ D L+ F++ G+V+ +V T +S GFGFVTF+S E +A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 222 ISSFNNAPLEGQKIRVNKA 240
I + + L G+ ++VN A
Sbjct: 98 IQALDGRDLHGRVVKVNYA 116
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG + + L V +A V+ D+ +GRSR F FV+ + AN AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 125 LNGTQIGGREIKVNV-TEK 142
++G ++ GR+I+VN+ TE+
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K++VG L+ LK F+ G+V A V T +S GFGFV+FS ++ AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G++IRVN A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG + + L V +A V+ D+ +GRSR F FV+ + AN AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 125 LNGTQIGGREIKVNV-TEK 142
++G ++ GR+I+VN+ TE+
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K++VG L+ LK F+ G+V A V T +S GFGFV+FS ++ AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G++IRVN A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 161 DSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEA 220
D Y+ ++G LA T + L++ F + G ++ AKV + +S GFGF+TF + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 221 AISSFNNAPLEGQKIRVNKA 240
AI++ N L+G+ I V+KA
Sbjct: 64 AIAAMNGMDLDGRTITVDKA 83
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
R ++G + T ++ L + +++ + +A+V+ DK+SGRSR F F+T + + AI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 125 LNGTQIGGREIKVNVTE 141
+NG + GR I V+ +
Sbjct: 68 MNGMDLDGRTITVDKAQ 84
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 164 YKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
Y+ +VG LA + L+ FS+ G V+ +K+ + +S GFGFVTF ++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 224 SFNNAPLEGQKIRVNKA 240
N L+G+ I VN+A
Sbjct: 66 EMNGKELDGRVITVNEA 82
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 60 SEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDAN 119
SE + R +VG + +++L + V ++++ D+ SGRSR F FVT K +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 120 AAIEKLNGTQIGGREIKVN 138
AIE++NG ++ GR I VN
Sbjct: 62 DAIEEMNGKELDGRVITVN 80
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L+VG IP+ ++ +L + QE A V++ ++ DK + SR F+ + E+A+ +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFF 184
+ K L V + + E E +K++VG L K V+ +++ F
Sbjct: 79 CHNK-------KTLPGANSLLQVKYADGELERLE-----HKLFVGMLPKNVSEAEVQSLF 126
Query: 185 SEKGKVLSAKVSRVPGTSKSS-GFGFVTFSSDEDVEAAISSFN 226
S+ G + ++ R G ++S G F+ + + E +A+ S N
Sbjct: 127 SKYGTIKDLQILR--GAQQTSKGCAFLKYETKEQAVSAMESIN 167
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
D ++VG++ ++++ L E + +V+ A+V+ D +GRS+ + FV +
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 121 AIEKLNGTQIGGREIKVNVTEK-------------PLTTVDFPLVQAEESEYVDSPYKVY 167
A+ ++NG + R +++ P T+ P E + +++ ++
Sbjct: 255 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRP-----EGDIMNT--TIF 307
Query: 168 VGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNN 227
VG L +VT + LK F+E G+++S K+ G GFV F + + E A+ N
Sbjct: 308 VGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 228 APLEGQKIRV 237
+ Q +R+
Sbjct: 362 TVIGKQTVRL 371
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 94 EVMYDKYSGRSRRFAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQ 153
+V+ +K +G S + FV ++ + A+ + + NGT + T++P
Sbjct: 133 KVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN-------TDQPFRLNWASFST 185
Query: 154 AEESEYVDSP-YKVYVGNLAKTVTSDMLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVT 211
E+ + P ++VG+L+ V+ ++L FSEK V +AKV T +S G+GFV
Sbjct: 186 GEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVR 245
Query: 212 FSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F + + A++ N + +R+ A
Sbjct: 246 FGDENERTKAMTEMNGVKCSSRAMRIGPA 274
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +++ L E + +V+ A+V+ D +GRS+ + FV + A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 122 IEKLNGTQIGGREIKVNVTEKPLTTVDF-------PLVQAEESEYVDSPYKVYVGNLAKT 174
+ ++NG + R +++ P T + P SE ++VG L +
Sbjct: 258 MTEMNGVKCSSRAMRIGPA-TPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSS 316
Query: 175 VTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQK 234
VT + LK FSE G+++S K+ G GFV F + + E A+ N + Q
Sbjct: 317 VTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 235 IRV 237
+R+
Sbjct: 371 VRL 373
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 63 DRRLYVGNIPRTLTNDEL--ANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
++ ++VG++ + L A E + +V+ +K++G S + FV ++ + A+
Sbjct: 102 NKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADK 161
Query: 121 AIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-YKVYVGNLAKTVTSDM 179
+++ NG + T++P E+ + P ++VG+LA V+ +
Sbjct: 162 VLQEFNGAPMPN-------TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDAL 214
Query: 180 LKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
L FSEK V +AKV T +S G+GFV F + + A++ N + +R+
Sbjct: 215 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 274
Query: 239 KA 240
A
Sbjct: 275 PA 276
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L ++ + +A +M D+ +GR+R F F+ A I
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 70
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY-----------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 71 MDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLP 127
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T KN+F + G + V T + GFGF+TF S+E V+ + +F+ L
Sbjct: 128 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHE--LN 185
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 186 GKMVEVKRA 194
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G I + L ++ + +A +M D+ +GR+R F F+ A I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 125 LNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESE-YVDSPY-----------KVYVGNLA 172
++ I GR ++ +K + D +++ S ++ SP K++VG L
Sbjct: 74 MDKHIIDGRTVEA---KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLP 130
Query: 173 KTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS-SFNNAPLE 231
++T KN+F + G + V T + GFGF+TF S+E V+ + +F+ L
Sbjct: 131 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHE--LN 188
Query: 232 GQKIRVNKA 240
G+ + V +A
Sbjct: 189 GKMVEVKRA 197
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L++ + T + L ++ + +E+A V+ DK +G+S+ + FVT V+ A A++
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVD-SPYKVYVGNLAKTVTSDMLKN 182
+ + +I GR V VT+ + Q S+ D S K+YV N+ + +D L N
Sbjct: 135 EPS-KKIDGR---VTVTQLAASG-----NQGTGSQIADISMRKIYVANVPFDMPADRLLN 185
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
F G V + T KS GF + + E +AA++
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+L++ + T + L ++ + +E+A V+ DK +G+S+ + FVT V+ A A++
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVD-SPYKVYVGNLAKTVTSDMLKN 182
+ + +I GR V VT+ + Q S+ D S K+YV N+ + +D L N
Sbjct: 135 EPS-KKIDGR---VTVTQLAASG-----NQGTGSQIADISMRKIYVANVPFDMPADRLLN 185
Query: 183 FFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAIS 223
F G V + T KS GF + + E +AA++
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
++ V NL K V D L++ FS+KG++ AK+ R KS FGF+ F S ++ + AI
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMR-SNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 225 FNNAPL 230
FNN L
Sbjct: 62 FNNTYL 67
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+LY+G + L + V +A VM +K +GRSR + FV + + AN+AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 125 LNGTQIGGREIKVNVTEK----PLTTVDFPLVQAEESE 158
+NG ++ G I VNV + PL ++D + +AE+ E
Sbjct: 92 MNGQELNGFNISVNVAKDWPSLPL-SLDESIEEAEKKE 128
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+Y+G L+ LK+ FS V A+V T +S G+GFV F S++ +AIS+
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 225 FNNAPLEGQKIRVNKA 240
N L G I VN A
Sbjct: 92 MNGQELNGFNISVNVA 107
>AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953708-16955127 REVERSE LENGTH=207
Length = 207
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ F+++GKV S + P T S GF FVT SS +D E I
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 226 NNAPLEGQKIRVNK 239
N + LEG+ I V +
Sbjct: 134 NQSVLEGRYITVER 147
>AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=201
Length = 201
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ F+++GKV S + P T S GF FVT SS +D E I
Sbjct: 88 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 147
Query: 226 NNAPLEGQKIRVNK 239
N + LEG+ I V +
Sbjct: 148 NQSVLEGRYITVER 161
>AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=244
Length = 244
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ F+++GKV S + P T S GF FVT SS +D E I
Sbjct: 88 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 147
Query: 226 NNAPLEGQKIRVNK 239
N + LEG+ I V +
Sbjct: 148 NQSVLEGRYITVER 161
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 57 ATQSEADRRLYVGNIPRTLTND-ELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTV 115
A+++ D ++VG++ +++ L + +V+ A+V+ D +GRS+ + FV
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Query: 116 EDANAAIEKLNGTQIGGREIKVNVT-------------EKPLTTVDFPLVQAEESEYVDS 162
+ + A+ ++NG R+++V + + LT S+ +
Sbjct: 266 NERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESN 325
Query: 163 PYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAI 222
++VG L VT + L FS+ G+V+S K+ G GFV F++ + E AI
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAI 379
Query: 223 SSFNNAPLEGQKIRV 237
+ N + +R+
Sbjct: 380 GNLNGTVIGKNTVRL 394
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI-E 123
+L++G I + L V +A ++ D+ +GR+R F FV A I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYV-DSP------YKVYVGNLAKTVT 176
K N I GR ++ +K + D +V S + SP K++VG L +VT
Sbjct: 67 KHN---IDGRLVEA---KKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNAPLEGQKI 235
K +F + G V T + GFGF+T+ S+E VE + +F+ L G+ +
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHE--LNGKMV 178
Query: 236 RVNKA 240
V +A
Sbjct: 179 EVKRA 183
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ T L FS+ G+V+ A++ + +S GFGFVTF+S ++ + A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 225 FNNAPLEGQKIRVNKA 240
FN L G+ I V+ A
Sbjct: 95 FNGQQLNGRTIFVDYA 110
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+L++G + T L+ + V +A+++ D+ S RS+ F FVT + ++A A+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 125 LNGTQIGGREIKVN 138
NG Q+ GR I V+
Sbjct: 95 FNGQQLNGRTIFVD 108
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAI-E 123
+L++G I + L V +A ++ D+ +GR+R F FV A I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYV-DSP------YKVYVGNLAKTVT 176
K N I GR ++ +K + D +V S + SP K++VG L +VT
Sbjct: 67 KHN---IDGRLVEA---KKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 177 SDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNAPLEGQKI 235
K +F + G V T + GFGF+T+ S+E VE + +F+ L G+ +
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHE--LNGKMV 178
Query: 236 RVNKA 240
V +A
Sbjct: 179 EVKRA 183
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+++G+L + + L F+ G+++SAKV R T + G+GF+ F+S E + +F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 226 NNAPLEG---QKIRVNKA 240
NNAP+ Q R+N A
Sbjct: 124 NNAPIPSFPDQLFRLNWA 141
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 54 QAAATQS----EAD--RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRF 107
QAAA S AD R L++G++ + + L + A+V+ +K +G+ +
Sbjct: 46 QAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGY 105
Query: 108 AFVTVKTVEDANAAIEKLNGTQIGG---REIKVNVTEKPLTTVDFPLVQAEESEYVDSP- 163
F+ + A ++ N I + ++N L ++ + DSP
Sbjct: 106 GFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS---------LSSGDKRD--DSPD 154
Query: 164 YKVYVGNLAKTVTS-DMLKNFFSEKGKVLSAKV--SRVPGTSKSSGFGFVTFSSDEDVEA 220
Y ++VG+LA VT +L+ F + V AKV RV T ++ G+GFV FS + +
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRV--TGRTKGYGFVRFSDESEQIR 212
Query: 221 AISSFNNAPLEGQKIRVNKA 240
A++ N P + +R+ A
Sbjct: 213 AMTEMNGVPCSTRPMRIGPA 232
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 63 DRRLYVGNIPRTLTNDELANIVQ-EHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
D ++VG++ +T+ L + + +V+ A+V+ D+ +GR++ + FV + A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 122 IEKLNGTQIGGREIKVN--VTEKPLTTVDFPLVQAEESEYVDSP-----------YKVYV 168
+ ++NG R +++ ++K +T + Y S V+V
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVT--------GQRDSYQSSAAGVTTDNDPNNTTVFV 265
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFS 213
G L +VT D LKN FS+ G+++ K +P + GFV FS
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVK---IPAGKRC---GFVQFS 304
>AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=239
Length = 239
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ F+++GKV S + P T S GF FVT SS +D E I
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 226 NNAPLEGQKIRVNKA 240
N + LEG+ I V ++
Sbjct: 134 NQSVLEGRYITVERS 148
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 62 ADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAA 121
ADR+LYVGN+ ++ +L I + VE ++ D +G+ + F F+ +E + AA
Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322
Query: 122 IEKLNGT-QIGGREIKVNVTEKPLTTVD 148
LNG +I GR IKV+ + T D
Sbjct: 323 QIALNGKLEIAGRTIKVSSVSDHIGTQD 350
>AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=238
Length = 238
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L+ F+++GKV S + P T S GF FVT SS +D E I
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 226 NNAPLEGQKIRVNKA 240
N + LEG+ I V ++
Sbjct: 133 NQSVLEGRYITVERS 147
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ L++ F+ G V+ AKV T +S GFGFV F+ + AAIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+ IRVN A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ L++ F+ G V+ AKV T +S GFGFV F+ + AAIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+ IRVN A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ L++ F+ G V+ AKV T +S GFGFV F+ + AAIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+ IRVN A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ L++ F+ G V+ AKV T +S GFGFV F+ + AAIS
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+ IRVN A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
RL+V + R TN++L + + A V+ D+ SGRS+ F FVT T+EDA A +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 125 LNGTQIGGREIKVN 138
+N + G I V+
Sbjct: 95 MNAKFLDGWVIFVD 108
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
+ L+VG++ + L + V +V+ +K + +S + FV + A ++
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSP-YKVYVGNLAKTVTSDMLKN 182
+G+ + + + +T E+ + P V+VG+L+ VT +L
Sbjct: 168 NYSGSVMPNSDQPFRINWASFST-------GEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 183 FFSEK-GKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS++ V SAKV T +S G+GFV F + + A++ N A +++RV A
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQE-HAAVEKAEVMYDKYSGRSRRFAFVTVKTV 115
A ++ D ++VG++ +T+ L + + +V+ A+V+ D +GRS+ + FV
Sbjct: 195 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 116 EDANAAIEKLNGTQIGGREIKVNVTEKPLTTV-------------------DFPLVQAEE 156
+ + A+ ++NG R+++V + P + + + +
Sbjct: 255 NERSRALTEMNGAYCSNRQMRVGIA-TPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQ 313
Query: 157 SEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDE 216
S+ + ++VG + V + L+ FS+ G+V+S K+ G GFV F+ +
Sbjct: 314 SDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRK 367
Query: 217 DVEAAISSFNNAPLEGQKIRV 237
E AI S N + +R+
Sbjct: 368 SAEDAIESLNGTVIGKNTVRL 388
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L+VG++ T +L + + +++ V YS SR FAF+ + VE+A AA E L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKEAL 73
Query: 126 NGTQIGGREIKVNVTE--KPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
G + G +IK+ KP + ++VG + V+ D L+
Sbjct: 74 QGANLNGSQIKIEYARPAKPCKS-------------------LWVGGIGPNVSKDDLEEE 114
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
FS+ GK+ + R T+ F+ + +D A S N P+ G +RV+
Sbjct: 115 FSKFGKIEDFRFLRERKTA------FIDYYEMDDALQA-KSMNGKPMGGSFLRVD 162
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L+VG++ T +L + + +++ V YS SR FAF+ + VE+A AA E L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKEAL 73
Query: 126 NGTQIGGREIKVNVTE--KPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
G + G +IK+ KP + ++VG + V+ D L+
Sbjct: 74 QGANLNGSQIKIEYARPAKPCKS-------------------LWVGGIGPNVSKDDLEEE 114
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
FS+ GK+ + R T+ F+ + +D A S N P+ G +RV+
Sbjct: 115 FSKFGKIEDFRFLRERKTA------FIDYYEMDDALQA-KSMNGKPMGGSFLRVD 162
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L+VG++ T +L + + +++ V YS SR FAF+ + VE+A AA E L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKEAL 73
Query: 126 NGTQIGGREIKVNVTE--KPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
G + G +IK+ KP + ++VG + V+ D L+
Sbjct: 74 QGANLNGSQIKIEYARPAKPCKS-------------------LWVGGIGPNVSKDDLEEE 114
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
FS+ GK+ + R T+ F+ + +D A S N P+ G +RV+
Sbjct: 115 FSKFGKIEDFRFLRERKTA------FIDYYEMDDALQA-KSMNGKPMGGSFLRVD 162
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
L+VG++ T +L + + +++ V YS SR FAF+ + VE+A AA E L
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKEAL 73
Query: 126 NGTQIGGREIKVNVTE--KPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
G + G +IK+ KP + ++VG + V+ D L+
Sbjct: 74 QGANLNGSQIKIEYARPAKPCKS-------------------LWVGGIGPNVSKDDLEEE 114
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVN 238
FS+ GK+ + R T+ F+ + +D A S N P+ G +RV+
Sbjct: 115 FSKFGKIEDFRFLRERKTA------FIDYYEMDDALQA-KSMNGKPMGGSFLRVD 162
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+LYV I +T T ++ + +++ V + + DK +G + F+ K VE+ NAAI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 125 LNGTQIGGRE---IKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLK 181
L E +KV E + F VQ D+P K+YV L K T +
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLP-----DNP-KLYVRCLNKQTTKMEVN 224
Query: 182 NFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFN 226
FS G ++ + G+ FV FS E AAI + N
Sbjct: 225 EVFSRYG-IIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 65 RLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEK 124
+++VG I + L ++ V A+++ D+ +GRSR FAFVT + E+A+ A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 125 LNGTQIGGREIKVN 138
L+G + GR I+VN
Sbjct: 94 LDGQDLHGRRIRVN 107
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
S K++VG ++ + L+ FS+ G+V+ AK+ T +S GF FVTF+S E+ A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ + L G++IRVN A
Sbjct: 92 M-QLDGQDLHGRRIRVNYA 109
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
RRLYVGN+ ++ D+L + + +VE +V D+ +G + F FV +EDA A+
Sbjct: 323 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL- 380
Query: 124 KLNGT-QIGGREIKVN 138
LNG +I GR IKV+
Sbjct: 381 NLNGQLEIAGRAIKVS 396
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L++ F+++GKV + P T +S GFGF++ S D I S
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 226 NNAPLEGQKIRVNK 239
+++ L+G+ I V K
Sbjct: 107 DHSVLQGRVITVEK 120
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 162 SPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAA 221
+P K++VG L+ + ++LK F GK++ A V + S GFGFVT+ S E A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 222 ISSFNNAPLEGQKIRVNKA 240
+ + N L+G+ I V+ A
Sbjct: 94 MQAMQNKELDGRIIGVHPA 112
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
RRLYVGN+ ++ D+L + + +VE +V D+ +G + F FV +EDA A+
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL- 342
Query: 124 KLNGT-QIGGREIKVN 138
LNG +I GR IKV+
Sbjct: 343 NLNGQLEIAGRAIKVS 358
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
RRLYVGN+ ++ D+L + + +VE +V D+ +G + F FV +EDA A+
Sbjct: 334 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL- 391
Query: 124 KLNGT-QIGGREIKVN 138
LNG +I GR IKV+
Sbjct: 392 NLNGQLEIAGRAIKVS 407
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 157 SEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDE 216
SE+ ++ Y+++ G+L V D+L F+ AKV R T K+ G+GFV+F +
Sbjct: 130 SEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPA 189
Query: 217 DVEAAISSFNNAPLEGQKIRVNKA 240
D+ AA+ N + + I++ K+
Sbjct: 190 DLAAALKEMNGKYVGNRPIKLRKS 213
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 61 EADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANA 120
E D RL+ G++ + +D L+ A+V+ DK +G+++ + FV+ D A
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 121 AIEKLNGTQIGGREIKV 137
A++++NG +G R IK+
Sbjct: 194 ALKEMNGKYVGNRPIKL 210
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 94 EVMYDKYSGRSRRFAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQ 153
+V+ +K +G S + FV ++ + A+ + + NGT + T++P
Sbjct: 133 KVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN-------TDQPFRLNWASFST 185
Query: 154 AEESEYVDSP-YKVYVGNLAKTVTSDMLKNFFSEK-GKVLSAKVSRVPGTSKSSGFGFVT 211
E+ + P ++VG+L+ V+ ++L FSEK V +AKV T +S G+GFV
Sbjct: 186 GEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVR 245
Query: 212 FSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
F + + A++ N + +R+ A
Sbjct: 246 FGDENERTKAMTEMNGVKCSSRAMRIGPA 274
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+++V + D L + +++ +E + + DK SG+S+ + F+ K+ A A++
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
+ +IG R + + + A+ + K+YV N++ + L F
Sbjct: 188 QPQ-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEF 246
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS G++ + T + GF + S E + A+ + EG + +KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKT-FEGHVLHCHKA 302
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 64 RRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIE 123
R+++V + D L + +++ +E + + DK SG+S+ + F+ K+ A A++
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 124 KLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNF 183
+ +IG R + + + A+ + K+YV N++ + L F
Sbjct: 188 QPQ-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEF 246
Query: 184 FSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
FS G++ + T + GF + S E + A+ + EG + +KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKT-FEGHVLHCHKA 302
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 156 ESEYVDSPY------KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGF 209
++ Y SP+ KV+VG LA +D ++ +F + G++L A + T KS G+GF
Sbjct: 3 QTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 210 VTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
VTF + A++ N ++G+K N A
Sbjct: 63 VTFRESDSATRAVADPNPV-IDGRKANCNIA 92
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 166 VYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSF 225
+YV L+ VT L++ F+++GKV + P T +S GFGF++ S D I S
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 226 NNAPLEGQKIRVNKA 240
+++ L+G+ I V KA
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
K+++G L+ +V LK+ FS G+V +++ G+ +S GFGFV F+ + D +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 225 FNNAPLEGQKIRVNKA 240
+ L G+ +R++ A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
KV+VG LA +D ++ +F + G++L A + T KS G+GFVTF + A++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 225 FNNAPLEGQKIRVNKA 240
N ++G+K N A
Sbjct: 78 PNPV-IDGRKANCNIA 92
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 165 KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISS 224
+++V L+ T L+ FS G++ A++ R T + GFGF+TF S++D A+ S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 225 FNNAPLEGQKIRVNKA 240
+ ++G+ I V A
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 156 ESEYVDSPY------KVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGF 209
++ Y SP+ KV+VG LA +D ++ +F + G++L A + T KS G+GF
Sbjct: 3 QTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 210 VTFSSDEDVEAAISSFNNAPLEGQKIRVNKA 240
VTF + A++ N ++G+K N A
Sbjct: 63 VTFRESDSATRAVADPNPV-IDGRKANCNIA 92
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+ V +P ++TN +L E V + ++ +K S R FAFV ED N AIE
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 126 NGTQIGGREIKV 137
NG+ +GGR I V
Sbjct: 82 NGSTVGGRRITV 93
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A + R+++V + + L +++ +E + ++DK SG+S+ + F+ K+
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 117 DANAAIEKLNGTQIGGREIKVNVTEK-PL-------TTVDFPLVQAEESEYVDSPYKVYV 168
A A+++ +IG R + K P+ Q SE+ K+YV
Sbjct: 193 GARNALKQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYV 249
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
N+ + L FFS+ G++ + T + GF + S E + A+ +
Sbjct: 250 SNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT 309
Query: 229 PLEGQKIRVNKA 240
EG + KA
Sbjct: 310 -FEGHILHCQKA 320
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A + R+++V + + L +++ +E + ++DK SG+S+ + F+ K+
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 117 DANAAIEKLNGTQIGGREIKVNVTEK-PL-------TTVDFPLVQAEESEYVDSPYKVYV 168
A A+++ +IG R + K P+ Q SE+ K+YV
Sbjct: 193 GARNALKQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYV 249
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
N+ + L FFS+ G++ + T + GF + S E + A+ +
Sbjct: 250 SNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT 309
Query: 229 PLEGQKIRVNKA 240
EG + KA
Sbjct: 310 -FEGHILHCQKA 320
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A + R+++V + + L +++ +E + ++DK SG+S+ + F+ K+
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 117 DANAAIEKLNGTQIGGREIKVNVTEK-PL-------TTVDFPLVQAEESEYVDSPYKVYV 168
A A+++ +IG R + K P+ Q SE+ K+YV
Sbjct: 193 GARNALKQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYV 249
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
N+ + L FFS+ G++ + T + GF + S E + A+ +
Sbjct: 250 SNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT 309
Query: 229 PLEGQKIRVNKA 240
EG + KA
Sbjct: 310 -FEGHILHCQKA 320
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A + R+++V + + L +++ +E + ++DK SG+S+ + F+ K+
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 117 DANAAIEKLNGTQIGGREIKVNVTEK-PL-------TTVDFPLVQAEESEYVDSPYKVYV 168
A A+++ +IG R + K P+ Q SE+ K+YV
Sbjct: 193 GARNALKQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYV 249
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
N+ + L FFS+ G++ + T + GF + S E + A+ +
Sbjct: 250 SNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT 309
Query: 229 PLEGQKIRVNKA 240
EG + KA
Sbjct: 310 -FEGHILHCQKA 320
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 57 ATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVE 116
A + R+++V + + L +++ +E + ++DK SG+S+ + F+ K+
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 117 DANAAIEKLNGTQIGGREIKVNVTEK-PL-------TTVDFPLVQAEESEYVDSPYKVYV 168
A A+++ +IG R + K P+ Q SE+ K+YV
Sbjct: 193 GARNALKQPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYV 249
Query: 169 GNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNA 228
N+ + L FFS+ G++ + T + GF + S E + A+ +
Sbjct: 250 SNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT 309
Query: 229 PLEGQKIRVNKA 240
EG + KA
Sbjct: 310 -FEGHILHCQKA 320
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP T +L V + +M +K SG + +AFVT ++ + A AI+ L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 126 NGTQIGGREIKVNVTE 141
N T G+ IK + T+
Sbjct: 154 NNTDFRGKRIKCSTTQ 169
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 66 LYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKL 125
+Y+G IP T +L V + +M +K SG + +AFVT ++ + A AI+ L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 126 NGTQIGGREIKVNVTE 141
N T G+ IK + T+
Sbjct: 154 NNTDFRGKRIKCSTTQ 169