Miyakogusa Predicted Gene

Lj3g3v0882650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0882650.1 Non Chatacterized Hit- tr|B7FH81|B7FH81_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,83.33,0,seg,NULL; coiled-coil,NULL; no
description,Translation protein SH3-like, subgroup; 60S RIBOSOMAL
PRO,CUFF.41587.1
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74050.1 | Symbols:  | Ribosomal protein L6 family protein | ...   303   7e-83
AT1G74060.1 | Symbols:  | Ribosomal protein L6 family protein | ...   301   3e-82
AT1G18540.1 | Symbols:  | Ribosomal protein L6 family protein | ...   287   5e-78

>AT1G74050.1 | Symbols:  | Ribosomal protein L6 family protein |
           chr1:27847256-27848680 REVERSE LENGTH=233
          Length = 233

 Score =  303 bits (775), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 152/231 (65%), Positives = 174/231 (75%)

Query: 2   APRKTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASKPP 61
           A ++TP+V RNPDLIRG+GKYSRSQMYHK+G+WAIKAKNGGVFP HDA  K      KPP
Sbjct: 3   AKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPP 62

Query: 62  KFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTG 121
           KFYPA+DV               RASI+PGTVLI+LAGRFKGKRVVFLKQL SGLLLVTG
Sbjct: 63  KFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTG 122

Query: 122 PFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXXXXX 181
           PFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKF+D+YF                     
Sbjct: 123 PFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

Query: 182 XXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
              E+PQ K+D Q  VD+A++KAI++VP+LK+YLGARFSLK GMKPHELVF
Sbjct: 183 EKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233


>AT1G74060.1 | Symbols:  | Ribosomal protein L6 family protein |
           chr1:27850033-27851299 REVERSE LENGTH=233
          Length = 233

 Score =  301 bits (770), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 173/231 (74%)

Query: 2   APRKTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASKPP 61
           A ++T +V RNPDLIRG+GKYSRSQMYHK+G+WAIKAKNGGVFP HDA  K      KPP
Sbjct: 3   AKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPP 62

Query: 62  KFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTG 121
           KFYPA+DV               RASI+PGTVLI+LAGRFKGKRVVFLKQL SGLLLVTG
Sbjct: 63  KFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTG 122

Query: 122 PFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXXXXX 181
           PFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKF+D+YF                     
Sbjct: 123 PFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

Query: 182 XXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
              E+PQ K+D Q  VD+A++KAI++VP+LK+YLGARFSLK GMKPHELVF
Sbjct: 183 EKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233


>AT1G18540.1 | Symbols:  | Ribosomal protein L6 family protein |
           chr1:6377448-6378548 REVERSE LENGTH=233
          Length = 233

 Score =  287 bits (734), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/231 (64%), Positives = 174/231 (75%)

Query: 2   APRKTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASKPP 61
           A ++TP+V RNPDLIRG+GKYSRSQMYHK+G+WAIKAKNGGVFP HDA PK      KP 
Sbjct: 3   AAKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPA 62

Query: 62  KFYPADDVXXXXXXXXXXXXXXXRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTG 121
           KFYPA+DV               +ASI+PGTVLI+LAGRFKGKRVVFLKQL SGLLLVTG
Sbjct: 63  KFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTG 122

Query: 122 PFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVXXXXXXXXXXXXXXXXXXXX 181
           PFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KF+D+YF                     
Sbjct: 123 PFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKE 182

Query: 182 XXNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF 232
              E+PQEK++ Q TVD+A++K+I++VP+LK YLGARFSL  GMKPHELVF
Sbjct: 183 EKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233