Miyakogusa Predicted Gene

Lj3g3v0860600.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0860600.3 tr|Q7XLQ4|Q7XLQ4_ORYSJ OSJNBa0044M19.2 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0044M19.2
PE,36.76,3e-18,KH_1,K Homology domain, type 1; KH_TYPE_1,K Homology
domain, type 1; Eukaryotic type KH-domain (KH-d,CUFF.41586.3
         (783 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G32940.1 | Symbols:  | RNA-binding KH domain-containing prote...   241   1e-63
AT5G51300.3 | Symbols:  | splicing factor-related | chr5:2084988...    98   2e-20
AT5G51300.2 | Symbols:  | splicing factor-related | chr5:2084988...    98   2e-20
AT5G51300.1 | Symbols:  | splicing factor-related | chr5:2084988...    98   2e-20

>AT3G32940.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr3:13491089-13493630 REVERSE LENGTH=607
          Length = 607

 Score =  241 bits (616), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 172/254 (67%), Gaps = 27/254 (10%)

Query: 25  TSGQKPSKFAAKSGFVIPKNKLSGSLVPVF-RGAKKHGVTGGAVNEESLKQIERVTKWGP 83
           TS  K S F AKSGFVIPKNKLSGSL+P+F RG K  G         S    +R TKW P
Sbjct: 4   TSAAKISMFGAKSGFVIPKNKLSGSLIPIFQRGNKTLGSADSDTGPPSKLGKKRKTKWAP 63

Query: 84  DLTQDASVKRAKAMALQIRVDQITKQLESEELQIGDTQNLPIASENPNQSTSGSDMNSKK 143
           DL+QD +VK+ + +A Q RVDQIT++LES  L++                T+ +D     
Sbjct: 64  DLSQDIAVKKCRFLAYQKRVDQITQRLESGTLEV---------------ETNRTD----- 103

Query: 144 SEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEASIPLPVQEHPGHKFIGLIYGPEGDT 203
              LE EKREAIGEIL+L+P YK PP +KPLLKEA +P+ V+EH    F+ LI+G +GDT
Sbjct: 104 ---LEFEKREAIGEILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDT 160

Query: 204 QKRLEKETGAKIKIHGTRADTGDKGEIKPG--TDIQCSYQEMHVNISADSFDKVDAAVSI 261
           QKRLEKETGAK++I GT+   G+K E+ P    +IQ S+QE++  IS+D+++KVDAA+++
Sbjct: 161 QKRLEKETGAKVQIFGTKTG-GEKVELSPSDENEIQKSWQELYFQISSDTYEKVDAAIAV 219

Query: 262 IELLLSSITGNSAA 275
           +ELL+SS++GN+ A
Sbjct: 220 VELLMSSVSGNTGA 233


>AT5G51300.3 | Symbols:  | splicing factor-related |
           chr5:20849881-20852295 REVERSE LENGTH=804
          Length = 804

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 18/183 (9%)

Query: 98  ALQIRVDQITKQLESEELQIGDTQNLPIASENPNQSTSGSDMNSKK---SEMLELEKREA 154
           AL  R+ +I++ L+S        +     S  P     G  +N+++    E L  E++E 
Sbjct: 160 ALNSRLLEISRMLQSGMPLDDRPEGQRSPSPEPVYDNMGIRINTREYRARERLNRERQEI 219

Query: 155 IGEILKLDPSYKPPPGFKPLLKEASIPLPVQEHPGHKFIGLIYGPEGDTQKRLEKETGAK 214
           I +I+K +P++KPP  ++P      + +P++E PG+ FIGLI GP G+TQKR+E+ETGAK
Sbjct: 220 IAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAK 279

Query: 215 IKIHGTRADTGDKGEIKPGTDIQ--------CSYQEMHVNISADSFDKVDAAVSIIELLL 266
           I I G       KG +K G   Q           +++HV + A++ + ++AA  ++E LL
Sbjct: 280 IVIRG-------KGSVKEGRHQQKKDLKYDPSENEDLHVLVEAETQEALEAAAGMVEKLL 332

Query: 267 SSI 269
             +
Sbjct: 333 QPV 335


>AT5G51300.2 | Symbols:  | splicing factor-related |
           chr5:20849881-20852295 REVERSE LENGTH=804
          Length = 804

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 18/183 (9%)

Query: 98  ALQIRVDQITKQLESEELQIGDTQNLPIASENPNQSTSGSDMNSKK---SEMLELEKREA 154
           AL  R+ +I++ L+S        +     S  P     G  +N+++    E L  E++E 
Sbjct: 160 ALNSRLLEISRMLQSGMPLDDRPEGQRSPSPEPVYDNMGIRINTREYRARERLNRERQEI 219

Query: 155 IGEILKLDPSYKPPPGFKPLLKEASIPLPVQEHPGHKFIGLIYGPEGDTQKRLEKETGAK 214
           I +I+K +P++KPP  ++P      + +P++E PG+ FIGLI GP G+TQKR+E+ETGAK
Sbjct: 220 IAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAK 279

Query: 215 IKIHGTRADTGDKGEIKPGTDIQ--------CSYQEMHVNISADSFDKVDAAVSIIELLL 266
           I I G       KG +K G   Q           +++HV + A++ + ++AA  ++E LL
Sbjct: 280 IVIRG-------KGSVKEGRHQQKKDLKYDPSENEDLHVLVEAETQEALEAAAGMVEKLL 332

Query: 267 SSI 269
             +
Sbjct: 333 QPV 335


>AT5G51300.1 | Symbols:  | splicing factor-related |
           chr5:20849881-20852295 REVERSE LENGTH=804
          Length = 804

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 18/183 (9%)

Query: 98  ALQIRVDQITKQLESEELQIGDTQNLPIASENPNQSTSGSDMNSKK---SEMLELEKREA 154
           AL  R+ +I++ L+S        +     S  P     G  +N+++    E L  E++E 
Sbjct: 160 ALNSRLLEISRMLQSGMPLDDRPEGQRSPSPEPVYDNMGIRINTREYRARERLNRERQEI 219

Query: 155 IGEILKLDPSYKPPPGFKPLLKEASIPLPVQEHPGHKFIGLIYGPEGDTQKRLEKETGAK 214
           I +I+K +P++KPP  ++P      + +P++E PG+ FIGLI GP G+TQKR+E+ETGAK
Sbjct: 220 IAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAK 279

Query: 215 IKIHGTRADTGDKGEIKPGTDIQ--------CSYQEMHVNISADSFDKVDAAVSIIELLL 266
           I I G       KG +K G   Q           +++HV + A++ + ++AA  ++E LL
Sbjct: 280 IVIRG-------KGSVKEGRHQQKKDLKYDPSENEDLHVLVEAETQEALEAAAGMVEKLL 332

Query: 267 SSI 269
             +
Sbjct: 333 QPV 335