Miyakogusa Predicted Gene

Lj3g3v0850570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0850570.1 tr|G7IWL8|G7IWL8_MEDTR E3 ubiquitin-protein
ligase makorin OS=Medicago truncatula GN=MTR_3g028190 PE,83.02,0,no
description,Zinc finger, RING/FYVE/PHD-type; ZF_RING_1,Zinc finger,
RING-type, conserved site; zi,CUFF.41582.1
         (318 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08505.1 | Symbols:  | zinc finger (CCCH-type/C3HC4-type RING...   402   e-112
AT3G08505.2 | Symbols:  | zinc finger (CCCH-type/C3HC4-type RING...   402   e-112

>AT3G08505.1 | Symbols:  | zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein | chr3:2580603-2582043 REVERSE
           LENGTH=323
          Length = 323

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/318 (62%), Positives = 231/318 (72%), Gaps = 36/318 (11%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGVCAYGSRCRYDHVKXXXXX 60
           MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK +C YGSRCRYDHV+     
Sbjct: 1   MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVR----- 55

Query: 61  XXXXXXXVVEHQPLVSGSFVFGNPRISSNGVAAAAESSLSKSPYIHTSKPAWNQESNYHD 120
                     + PL S S               + + S+S +P  H  +   N +     
Sbjct: 56  -------AASNLPLSSDS--------------ESLDRSISTTPSRHLQQQGDNND----- 89

Query: 121 LLGEDDVDVGQPITTLPSELSICSFAAVGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEE 180
             G+   +V       P E  ICSFAA G+CPRG +CPH+HGDLC TCGK CLHPFRPEE
Sbjct: 90  --GDKSSNV---YCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEE 144

Query: 181 REEHIKSCEDKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIR 240
           REEH K CE KQKH+EALK+SQ+IECSVCL+R+LSK T  ERKFGLL+ECDHPFCI CIR
Sbjct: 145 REEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIR 204

Query: 241 NWRNSNPTLGMDVNGTLRACPICRKLSYFVVPSVIWYSTSEEKQEIVDTYKAKLKSIDCK 300
           NWR+S P  GMDVN TLRACPICRKLSYFVVPSV+WYS+ EEK+EI+D YKAKL+SIDCK
Sbjct: 205 NWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCK 264

Query: 301 HFDFGDGNCPFGTSCFYK 318
           HF+FG+GNCPFG SCFYK
Sbjct: 265 HFNFGNGNCPFGASCFYK 282


>AT3G08505.2 | Symbols:  | zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein | chr3:2580603-2582043 REVERSE
           LENGTH=323
          Length = 323

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/318 (62%), Positives = 231/318 (72%), Gaps = 36/318 (11%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGVCAYGSRCRYDHVKXXXXX 60
           MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK +C YGSRCRYDHV+     
Sbjct: 1   MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVR----- 55

Query: 61  XXXXXXXVVEHQPLVSGSFVFGNPRISSNGVAAAAESSLSKSPYIHTSKPAWNQESNYHD 120
                     + PL S S               + + S+S +P  H  +   N +     
Sbjct: 56  -------AASNLPLSSDS--------------ESLDRSISTTPSRHLQQQGDNND----- 89

Query: 121 LLGEDDVDVGQPITTLPSELSICSFAAVGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEE 180
             G+   +V       P E  ICSFAA G+CPRG +CPH+HGDLC TCGK CLHPFRPEE
Sbjct: 90  --GDKSSNV---YCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEE 144

Query: 181 REEHIKSCEDKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIR 240
           REEH K CE KQKH+EALK+SQ+IECSVCL+R+LSK T  ERKFGLL+ECDHPFCI CIR
Sbjct: 145 REEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIR 204

Query: 241 NWRNSNPTLGMDVNGTLRACPICRKLSYFVVPSVIWYSTSEEKQEIVDTYKAKLKSIDCK 300
           NWR+S P  GMDVN TLRACPICRKLSYFVVPSV+WYS+ EEK+EI+D YKAKL+SIDCK
Sbjct: 205 NWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLRSIDCK 264

Query: 301 HFDFGDGNCPFGTSCFYK 318
           HF+FG+GNCPFG SCFYK
Sbjct: 265 HFNFGNGNCPFGASCFYK 282