Miyakogusa Predicted Gene

Lj3g3v0838340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0838340.1 Non Chatacterized Hit- tr|I1PEL9|I1PEL9_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,51.35,4e-19,Ankyrin repeat,Ankyrin repeat-containing domain;
seg,NULL; ANK_REPEAT,Ankyrin repeat; ANK_REP_REGION,CUFF.41570.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41900.1 | Symbols:  | CCCH-type zinc finger protein with ARM...   178   2e-45
AT5G12850.1 | Symbols:  | CCCH-type zinc finger protein with ARM...   152   1e-37
AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (...   120   4e-28
AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (...   120   4e-28
AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger...   120   5e-28
AT5G58620.1 | Symbols:  | zinc finger (CCCH-type) family protein...   102   1e-22
AT3G24530.1 | Symbols:  | AAA-type ATPase family protein / ankyr...    47   6e-06

>AT2G41900.1 | Symbols:  | CCCH-type zinc finger protein with ARM
           repeat domain | chr2:17491352-17493502 FORWARD
           LENGTH=716
          Length = 716

 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 111/132 (84%)

Query: 25  DMKNLTVHTEDSFSTLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIVLEHR 84
           DM +LTV TED+F++L ELA+NND E  +L+++RD S ++E G WY RQ GSK +V ++R
Sbjct: 33  DMNHLTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYR 92

Query: 85  TPLMVASCYGSIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAG 144
           TPLMVA+ YGSIDV+KLI++ ++ADVN +CGND++TALHCAASGG+VNA+ V+KLLL+AG
Sbjct: 93  TPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAG 152

Query: 145 ADINCVDANGNR 156
           AD+N +DA G R
Sbjct: 153 ADLNLLDAEGQR 164


>AT5G12850.1 | Symbols:  | CCCH-type zinc finger protein with ARM
           repeat domain | chr5:4057068-4059188 FORWARD LENGTH=706
          Length = 706

 Score =  152 bits (383), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/123 (62%), Positives = 94/123 (76%), Gaps = 1/123 (0%)

Query: 34  EDSFSTLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIVLEHRTPLMVASCY 93
           E SFS L E A++ND E F+  L  D S IN++G WY RQ   +++VLE RTPLMVAS Y
Sbjct: 36  EHSFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLY 94

Query: 94  GSIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDAN 153
           GS+DV+K IL+  EA++N SCG DKSTALHCAASG SVN++DV+KLLLS GAD N  DA+
Sbjct: 95  GSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAH 154

Query: 154 GNR 156
           GNR
Sbjct: 155 GNR 157


>AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger
           (CCCH-type) family protein | chr2:16772537-16774330
           FORWARD LENGTH=597
          Length = 597

 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)

Query: 36  SFSTLHELASNNDFESFKLALDRDASL-INEVGPWYVRQSGSKQIVLEHRTPLMVASCYG 94
           S + L E A+ +D  SFK  ++ + S+ I+E G WY R+ GSK++  E RTPLMVA+ YG
Sbjct: 29  SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYG 88

Query: 95  SIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANG 154
           S++VL  I+    +DVN  C ++K TALHCA SG SV+ V+++K+LL A A  NCVDANG
Sbjct: 89  SMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANG 148

Query: 155 NR 156
           N+
Sbjct: 149 NK 150


>AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger
           (CCCH-type) family protein | chr2:16772537-16774330
           FORWARD LENGTH=597
          Length = 597

 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)

Query: 36  SFSTLHELASNNDFESFKLALDRDASL-INEVGPWYVRQSGSKQIVLEHRTPLMVASCYG 94
           S + L E A+ +D  SFK  ++ + S+ I+E G WY R+ GSK++  E RTPLMVA+ YG
Sbjct: 29  SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYG 88

Query: 95  SIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANG 154
           S++VL  I+    +DVN  C ++K TALHCA SG SV+ V+++K+LL A A  NCVDANG
Sbjct: 89  SMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANG 148

Query: 155 NR 156
           N+
Sbjct: 149 NK 150


>AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger 1
           | chr3:20776857-20778599 FORWARD LENGTH=580
          Length = 580

 Score =  120 bits (300), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 84/123 (68%)

Query: 34  EDSFSTLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIVLEHRTPLMVASCY 93
           E+    L E A+ +D +SFK  ++     ++E G WY R+ GSK++ LE RTPLMVA+ Y
Sbjct: 24  EEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMY 83

Query: 94  GSIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDAN 153
           GSI VL  I++  ++DVN +CG ++ T LHCA +G SVN ++V+ +LL A A +N VDAN
Sbjct: 84  GSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDAN 143

Query: 154 GNR 156
           GN+
Sbjct: 144 GNQ 146


>AT5G58620.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:23693959-23695782 FORWARD LENGTH=607
          Length = 607

 Score =  102 bits (253), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 1/121 (0%)

Query: 37  FSTLHELASNNDFESFKLALDRDA-SLINEVGPWYVRQSGSKQIVLEHRTPLMVASCYGS 95
           FS L E ++ ND   FK  ++ +    I+  G WY R+ GSK++  E RTPLM+A+ +GS
Sbjct: 11  FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGS 70

Query: 96  IDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANGN 155
            +V+  I++    DVN SCG+D +TALHCA SG S N+++++ LLL   A+ +  DA GN
Sbjct: 71  KEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGN 130

Query: 156 R 156
           +
Sbjct: 131 K 131


>AT3G24530.1 | Symbols:  | AAA-type ATPase family protein / ankyrin
           repeat family protein | chr3:8945678-8947786 REVERSE
           LENGTH=481
          Length = 481

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 17/119 (14%)

Query: 38  STLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIVLEHRTPLMVASCYGSID 97
           +T+H+ A + D  + +  L  + SL+NE  P           V+ H TPL V++  G++D
Sbjct: 17  TTIHDCALSGDLIALQRLLKDNPSLLNERNP-----------VMYH-TPLHVSAGNGNVD 64

Query: 98  VLKLILTCSEAD-VNFSCGND-KSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANG 154
           ++K +L  + +D V     N    T LH AA  G   A    KLLL +GA I    +NG
Sbjct: 65  IVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAA---KLLLESGAFIEAKASNG 120