Miyakogusa Predicted Gene
- Lj3g3v0838310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0838310.1 Non Chatacterized Hit- tr|A9NXG9|A9NXG9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,33.83,5e-18,seg,NULL; PEI1, NUCLEIC ACID BINDING / TRANSCRIPTION
FACTOR,NULL; UNCHARACTERIZED,NULL,TC72943.path1.1
(240 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41900.1 | Symbols: | CCCH-type zinc finger protein with ARM... 158 4e-39
AT5G12850.1 | Symbols: | CCCH-type zinc finger protein with ARM... 111 5e-25
AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (... 64 1e-10
AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (... 64 1e-10
AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger... 59 2e-09
AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protein... 57 9e-09
>AT2G41900.1 | Symbols: | CCCH-type zinc finger protein with ARM
repeat domain | chr2:17491352-17493502 FORWARD
LENGTH=716
Length = 716
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 150/260 (57%), Gaps = 34/260 (13%)
Query: 1 MSRSGWSKTLTPSNLDDLFSAEISSSPRYSDPAAAS-VFSPTHRSAV----XXXXXXXXX 55
+SRSG K++ PSNL+DLFSAE SSSPR++D A AS VFSPTH+SAV
Sbjct: 471 LSRSGRMKSMPPSNLEDLFSAEGSSSPRFTDSALASAVFSPTHKSAVFNQFQQQQQQQQS 530
Query: 56 XXXPINTNVLSPNNGEHPLRDSSFGVSSPGRMSPRS-VEPLSPGSSRLSAFAXXXXXXXX 114
PINT+ SP + +H L S GRMSPR+ VEP+SP S+R+S A
Sbjct: 531 MLSPINTSFSSPKSVDHSL------FSGGGRMSPRNVVEPISPMSARVSMLAQCVKQQQQ 584
Query: 115 XXXXXXXXXG---------ANNPASIVGSPI--NSW-SKWGSPTGKVDWSVNGNELGRLQ 162
N + IVGSP+ N+W SKWGS G+ DW ++ LG+L+
Sbjct: 585 QQQQQQQQHQFRSLSSRELRTNSSPIVGSPVNNNTWSSKWGSSNGQPDWGMSSEALGKLR 644
Query: 163 RSSSFELGNNGEEPDLSWVQSLVKDTPPEIKEKLAVSGPIASADGL--NSNFQMETVDNS 220
SSSF+ G+EPD+SWVQSLVK+TP E KEK A S +S + + N +D++
Sbjct: 645 SSSSFD----GDEPDVSWVQSLVKETPAEAKEKAATS---SSGEHVMKQPNPVEPVMDHA 697
Query: 221 VLEAWLEQMHLDQHVVYSQN 240
LEAW+EQM LDQ +V QN
Sbjct: 698 GLEAWIEQMQLDQ-LVAQQN 716
>AT5G12850.1 | Symbols: | CCCH-type zinc finger protein with ARM
repeat domain | chr5:4057068-4059188 FORWARD LENGTH=706
Length = 706
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 132/247 (53%), Gaps = 32/247 (12%)
Query: 1 MSRSGWSKTLTPSNLDDLFSAEISSSPRYSDP-AAASVFSPTHRSA-VXXXXXXXXXXXX 58
M+ S KTL PSNL++LFSAE+ +SPR+SD A +SV SP+H+SA +
Sbjct: 478 MNHSARPKTLNPSNLEELFSAEV-ASPRFSDQLAVSSVLSPSHKSALLNQLQNNKQSMLS 536
Query: 59 PINTNVL-SPNNGE-HPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAXXXXXXXXXX 116
PI TN++ SP N E H L + SPR EP+SP ++R+
Sbjct: 537 PIKTNLMSSPKNVEQHSLLQQA--------SSPRGGEPISPMNARMK-------QQLHSR 581
Query: 117 XXXXXXXGANNPASIV----GSPINSWSKWGSPTG-KVDWSVNGNELGRLQRSSSFELGN 171
G++ P ++ GSP++ WS W G KVDWSV +ELGRL++S S L N
Sbjct: 582 SLSSRDFGSSLPRDLMPTDSGSPLSPWSSWDQTHGSKVDWSVQSDELGRLRKSHS--LAN 639
Query: 172 N-GEEPDLSWVQSLVKD--TPPEIKEKLAVSG--PIASADGLNSNFQMETVDNSVLEAWL 226
N E D+SW Q ++KD +P + ++G P+ + +T ++ +L+AWL
Sbjct: 640 NPNREADVSWAQQMLKDSSSPRNGNRVVNMNGARPLTQGGSSVNPHNSDTRESDILDAWL 699
Query: 227 EQMHLDQ 233
EQ+HLD+
Sbjct: 700 EQLHLDR 706
>AT2G40140.2 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger
(CCCH-type) family protein | chr2:16772537-16774330
FORWARD LENGTH=597
Length = 597
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 26/112 (23%)
Query: 140 SKWGSPTGKVDWSVNGNELGRLQRSSSFEL-GNNG-----------EEPDLSWVQSLVKD 187
S WGSP GK++W + +EL +L+RS+SF + GNN +EPD+SWV SLVK+
Sbjct: 496 SDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVSRPARDYSDEPDVSWVNSLVKE 555
Query: 188 TPPE-IKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLD--QHVV 236
PE + E++ + +G S D L +W EQM++D Q +V
Sbjct: 556 NAPERVNERVG-----NTVNGAASR------DKFKLPSWAEQMYIDHEQQIV 596
>AT2G40140.1 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger
(CCCH-type) family protein | chr2:16772537-16774330
FORWARD LENGTH=597
Length = 597
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 26/112 (23%)
Query: 140 SKWGSPTGKVDWSVNGNELGRLQRSSSFEL-GNNG-----------EEPDLSWVQSLVKD 187
S WGSP GK++W + +EL +L+RS+SF + GNN +EPD+SWV SLVK+
Sbjct: 496 SDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVSRPARDYSDEPDVSWVNSLVKE 555
Query: 188 TPPE-IKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLD--QHVV 236
PE + E++ + +G S D L +W EQM++D Q +V
Sbjct: 556 NAPERVNERVG-----NTVNGAASR------DKFKLPSWAEQMYIDHEQQIV 596
>AT3G55980.1 | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger 1
| chr3:20776857-20778599 FORWARD LENGTH=580
Length = 580
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 9/65 (13%)
Query: 133 GSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFEL-GNNG--------EEPDLSWVQS 183
+P ++ S WGSP GK++W + G EL +++RS SF + GNN +EPD+SWV S
Sbjct: 484 AAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNNNAARDYRDEPDVSWVNS 543
Query: 184 LVKDT 188
LVKD+
Sbjct: 544 LVKDS 548
>AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr5:23693959-23695782 FORWARD LENGTH=607
Length = 607
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 124 GANNPASIVGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFEL------------GN 171
G N+ +I + WGS GK+DWSV G+EL +L++S+SF L G
Sbjct: 509 GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGT 568
Query: 172 NGEEPDLSWVQSLVKD 187
EEPD+SWV+ LVK+
Sbjct: 569 GLEEPDVSWVEPLVKE 584