Miyakogusa Predicted Gene

Lj3g3v0828240.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0828240.1 tr|B9MX86|B9MX86_POPTR F-box family protein
OS=Populus trichocarpa GN=POPTRDRAFT_796629 PE=4
SV=1,28.08,2e-18,seg,NULL; no description,NULL,CUFF.41573.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17030.1 | Symbols:  | F-box family protein with a domain of ...   179   2e-45
AT2G17036.1 | Symbols:  | F-box family protein with a domain of ...   112   5e-25
AT5G60060.1 | Symbols:  | Protein of unknown function (DUF295) |...    57   2e-08

>AT2G17030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7399108-7400650 FORWARD
           LENGTH=407
          Length = 407

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/265 (43%), Positives = 145/265 (54%), Gaps = 5/265 (1%)

Query: 45  DWSQLPAELRHLISQRLNSPPSLPRFRSVCSTWRHSSA-SSXXXXXXXXXXXXXLXXXXX 103
           DWS LP +L  LIS+ L S   L +FRSVCS+WR ++   S                   
Sbjct: 3   DWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFP 62

Query: 104 XXXXXFSLTKRTVVLIXXXXXXXXXXXXXWLVKIGEDLCDGDRTRTRLWHPLFRGPH-FP 162
                F L++R+++LI             WL+K+ EDL      +  L  PL    +  P
Sbjct: 63  DSAVGFRLSQRSILLIKPHEPCIESDSFGWLIKVEEDL--NVPRKVTLLDPLCDTRNSIP 120

Query: 163 IYAMRVLDFYNLSVLHIGNEFNLXXXXXXXXXXDSLYMEKVVAATTYQGKQEVFVLLTIH 222
               RVLD     V  +G EF L          +SLY+EK V           FVLLTIH
Sbjct: 121 ENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVESLYLEKAVVKYLDCDGDYKFVLLTIH 180

Query: 223 ISGKLALFRSGDESWRIIPDMPTPYDDVCVFNGRHFAVDGTGRTVVVGLDSALDLVVVAE 282
           +SGKLA+FRS D +W +I DMP+PYDDV +F+GR FAVD  GRTVVV   S+L L +VA 
Sbjct: 181 VSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDY-SSLKLTLVAS 239

Query: 283 PVFGGDKKFLVESDGELLLVDKHMS 307
           PVFGGDKKFL+ES GE+LLVD ++S
Sbjct: 240 PVFGGDKKFLIESCGEMLLVDMYLS 264


>AT2G17036.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7403856-7405219 FORWARD
           LENGTH=428
          Length = 428

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 125/268 (46%), Gaps = 7/268 (2%)

Query: 45  DWSQLPAELRHLISQRLNSPPSLPRFRSVCSTWRHSSASSXXXXXXXXXXXXXLXXXXXX 104
           DW+ LP +L  LIS+ L S   L +FRSVCS+WR S+A                      
Sbjct: 2   DWATLPKDLLDLISKCLESSFDLIQFRSVCSSWR-SAAGPKRLLWAHNLPFFPSDDKPFL 60

Query: 105 XXXXFSLTKRTVVLIXXXXXXXXXXXXXWLVKIGEDLCDGDRTRTRLWHPLFRG-PHFPI 163
                 +  ++++LI             W+VK+ +++      +  L  PL     +FP 
Sbjct: 61  SNVILRVAHQSILLIKPNEPQCEADLFGWIVKVWDNIYVS--RKMTLLKPLSSSRNYFPQ 118

Query: 164 YAMRVLDFYNLSVLHIGNEFNLXXXXXXXXXXDSLYMEKVVAATTYQGKQEVFVLLTIHI 223
           +  R+ D    +V  +  E  L           +    ++          + FVLLTI  
Sbjct: 119 HLPRIFDMSKFTVRELCREVKLYHPDYYCVPGHTALELELGKTVVKYLNDDKFVLLTILE 178

Query: 224 SGKLALFRSGDESWRIIPD-MPTPYDDVCVFNGRHFAVDGTGRTVVVGLDSALDLVVVAE 282
            GKLA+FRS D  W +I D +P+   D+ +F+GR FA+D  GRTVVV   S+  L + A 
Sbjct: 179 YGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDY-SSFKLTLAAN 237

Query: 283 PVFGG-DKKFLVESDGELLLVDKHMSSN 309
           P+ GG DKKFL+ES GE+ LVD     N
Sbjct: 238 PLIGGGDKKFLIESCGEMFLVDIEFCLN 265


>AT5G60060.1 | Symbols:  | Protein of unknown function (DUF295) |
           chr5:24188600-24189724 REVERSE LENGTH=374
          Length = 374

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 197 SLYMEKVVAATTYQGKQEVFVLLTIHISGKLALFRSG-DESWRIIPDM-PTPYDDVCVF- 253
           SL+ +KVV  ++     E   ++ IH  GKL   +SG DE W+I+ +     Y+D+ ++ 
Sbjct: 163 SLHSDKVVILSS----GEDSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIMLYK 218

Query: 254 NGRHFAVDGTGRTVVVGLDSALDLVVVAEPVFGGDKKFLVE-SDGELLLVDKHMSSNW 310
           + R   VD  G+TV+  +D  +  +       GG KK LVE S GE+ LVDK++ + W
Sbjct: 219 DNRCIVVDDKGKTVIYDVDFKVSDLAEGLVGGGGHKKHLVECSGGEVFLVDKYVKTVW 276