Miyakogusa Predicted Gene

Lj3g3v0827190.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0827190.1 Non Chatacterized Hit- tr|I3SFV4|I3SFV4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.95,0,seg,NULL;
DUF1092,Protein of unknown function DUF1092,CUFF.41564.1
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08010.1 | Symbols: ATAB2 | RNA binding | chr3:2556046-255742...   487   e-138

>AT3G08010.1 | Symbols: ATAB2 | RNA binding | chr3:2556046-2557426
           FORWARD LENGTH=374
          Length = 374

 Score =  487 bits (1254), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/382 (62%), Positives = 293/382 (76%), Gaps = 8/382 (2%)

Query: 1   MATLSFNPTRIRTPTFNRSNPSTKLTSSSKPIRIPCIPSSINHSHQKLIHFRANSVSETS 60
           MATL FN  RI+TP+  R     K +S +KPI+   + SS   +  K   F + S+ E+S
Sbjct: 1   MATLGFNTRRIQTPSLPRI---PKPSSFTKPIKTHHLFSS--ETLLKRCRFVSRSLPESS 55

Query: 61  LSTQKXXXXXXXXXXXXXXXPTAEMSFLDPETDPDAISDWELDFCSRPILDARGKKLWEL 120
           LS  K               PT+E+S+LDPE+D D+I +WELDFCSRPILD+RGKK+WEL
Sbjct: 56  LSITKEQEVANEVEEDD---PTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWEL 112

Query: 121 VVCDSTLSLQFTKYFPNNVINSITLKDAVVSVCDDLGLPLPKKIRFFRSQMQTIITRACN 180
           VVCD++LSLQ TKYFPNNVINSITLKDA+V++  DLG+PLP+KIRFFRSQMQTIIT+AC 
Sbjct: 113 VVCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACK 172

Query: 181 ELGIKPVPSKRCLSLLLWLEERYETVYKKHPGFQKGFTPLLALDNPFPTKLPEDLFGERW 240
           EL IK VPSKRCLSL LWL+ERY+TVY +HPGFQKG  PLL+LDNPFP  LPE+LFGE+W
Sbjct: 173 ELAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKW 232

Query: 241 AFVQLPFSAVREELTSLQTNTIFGSGLDLDLMGIEIDDKTMIPGLAVGSSRATVLSAIMN 300
           AFVQLP+SAVREE++      +FG+ LDLDL+GIE+D+ T+IPGL+V +SRA  L+A MN
Sbjct: 233 AFVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMN 292

Query: 301 SFELCTVEADTARGSLILSVGISTRYVYATYKKTPTTTSXXXXXXXXXXXCGGLHFLAIQ 360
             E+C++EAD+++G LILSVGI+TRYVYATYKKTP TT             GGLHFLAIQ
Sbjct: 293 GLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQ 352

Query: 361 QDIESEECAGFWLLLDLPPPPV 382
            D++S++C GFWLL+DLPPPPV
Sbjct: 353 DDLDSDDCVGFWLLIDLPPPPV 374