Miyakogusa Predicted Gene
- Lj3g3v0826110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0826110.1 tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2
OS=Glycine max GN=Gma.43351 PE=3 SV=1,86.8,0,DNA_topoisoIV,DNA
topoisomerase, type IIA, subunit A/C-terminal; Toprim,Toprim domain;
TOPISMRASEII,,CUFF.41569.1
(857 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:... 978 0.0
AT3G23890.2 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:... 977 0.0
AT3G10690.1 | Symbols: GYRA | DNA GYRASE A | chr3:3339612-334624... 80 5e-15
AT5G04130.1 | Symbols: GYRB2 | DNA GYRASE B2 | chr5:1122084-1128... 77 6e-14
AT3G10270.1 | Symbols: GYRB1 | DNA GYRASE B1 | chr3:3173805-3179... 74 3e-13
AT2G13720.1 | Symbols: | DNA topoisomerase (ATP-hydrolyzing)s;A... 54 5e-07
>AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II |
chr3:8624931-8631106 FORWARD LENGTH=1473
Length = 1473
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/763 (63%), Positives = 586/763 (76%), Gaps = 12/763 (1%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
V SG+++ LLSWADFKQ+KDLKK+DG KT R+ + KL+DA +AGG+NS CTLILTEG
Sbjct: 404 VGKSGVVENLLSWADFKQNKDLKKSDGAKTGRVL-VEKLDDAAEAGGKNSRLCTLILTEG 462
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAK+LA+AG SV+G ++ GVFPLRGKLLNVREAS QI +N+EI+N+KKILGL+QN +Y
Sbjct: 463 DSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY 522
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
NV SLRYG +MIM DQDHDGSHIKGLLINFIHSFWPSLL+VPSF+VEF TPI++A
Sbjct: 523 ENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATR-K 581
Query: 193 GTK--LSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVW 250
GTK LSFYSMPEYE W+E+L NATGW IKYYKGLGTST +EG+EYF +LG H+KDFVW
Sbjct: 582 GTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVW 641
Query: 251 EDDYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQ 310
ED+ DG AIE+AFSKKK E RK W+ ++ PGN+ D ++ Y DFVNKELILFS ADLQ
Sbjct: 642 EDEQDGEAIELAFSKKKIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQ 701
Query: 311 RSIPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMA 370
RSIPS+VDGLKPGQRKILF +FKK KE+KV Q +GYVS SAYHHGEQSLAS IIGMA
Sbjct: 702 RSIPSMVDGLKPGQRKILFVAFKKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMA 761
Query: 371 QDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNED 430
QD+VGSNNINLL PNGQFGTR GGKD AS+RYI+T+L+P+TR LF ++DD LL+YLNED
Sbjct: 762 QDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNED 821
Query: 431 GRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWY 490
G+ IEP+WY+PIIP VLVNG+EGIGTGWS++IPNYNPR+I+ANVRRLLN E+MVPMDPWY
Sbjct: 822 GQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWY 881
Query: 491 RGFKGIIEKSA-KEGG--YIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESI-TDGSP 546
RGFKG IEK+A KEGG Y + G EE+DE + RITELPIR+W DYK FL+S+ TD
Sbjct: 882 RGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGA 941
Query: 547 NVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEG 606
P +D + D+ VD ++ + E + QEG LKKFKLTTTI+TSNMHLFD +G
Sbjct: 942 ----PFFQDVKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKG 997
Query: 607 KIKKYENPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSN 666
IKKY PEQILEEFF LR +YYE+RK+ +++N E LL L+NK RFIL V+SGEI+V+
Sbjct: 998 VIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNK 1057
Query: 667 RKKADLLMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKRGDY 726
RKKAD++ +L+QKGFTP P+K +S E +AGA +Y
Sbjct: 1058 RKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEY 1117
Query: 727 EYLLSMSIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWM 769
+YLL+M+I +LT+E V+ T KS+W+
Sbjct: 1118 DYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWL 1160
>AT3G23890.2 | Symbols: TOPII, ATTOPII | topoisomerase II |
chr3:8624931-8631106 FORWARD LENGTH=1438
Length = 1438
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/763 (63%), Positives = 586/763 (76%), Gaps = 12/763 (1%)
Query: 13 VANSGILDTLLSWADFKQSKDLKKTDGTKTQRLRGIVKLEDANDAGGRNSDKCTLILTEG 72
V SG+++ LLSWADFKQ+KDLKK+DG KT R+ + KL+DA +AGG+NS CTLILTEG
Sbjct: 404 VGKSGVVENLLSWADFKQNKDLKKSDGAKTGRVL-VEKLDDAAEAGGKNSRLCTLILTEG 462
Query: 73 DSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNEEIQNIKKILGLQQNKEY 132
DSAK+LA+AG SV+G ++ GVFPLRGKLLNVREAS QI +N+EI+N+KKILGL+QN +Y
Sbjct: 463 DSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY 522
Query: 133 SNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRAFHSN 192
NV SLRYG +MIM DQDHDGSHIKGLLINFIHSFWPSLL+VPSF+VEF TPI++A
Sbjct: 523 ENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATR-K 581
Query: 193 GTK--LSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVW 250
GTK LSFYSMPEYE W+E+L NATGW IKYYKGLGTST +EG+EYF +LG H+KDFVW
Sbjct: 582 GTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVW 641
Query: 251 EDDYDGSAIEMAFSKKKAEDRKVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQ 310
ED+ DG AIE+AFSKKK E RK W+ ++ PGN+ D ++ Y DFVNKELILFS ADLQ
Sbjct: 642 EDEQDGEAIELAFSKKKIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQ 701
Query: 311 RSIPSVVDGLKPGQRKILFCSFKKKLFKEIKVGQFIGYVSEHSAYHHGEQSLASTIIGMA 370
RSIPS+VDGLKPGQRKILF +FKK KE+KV Q +GYVS SAYHHGEQSLAS IIGMA
Sbjct: 702 RSIPSMVDGLKPGQRKILFVAFKKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMA 761
Query: 371 QDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRCLFHENDDKLLEYLNED 430
QD+VGSNNINLL PNGQFGTR GGKD AS+RYI+T+L+P+TR LF ++DD LL+YLNED
Sbjct: 762 QDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNED 821
Query: 431 GRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLNDETMVPMDPWY 490
G+ IEP+WY+PIIP VLVNG+EGIGTGWS++IPNYNPR+I+ANVRRLLN E+MVPMDPWY
Sbjct: 822 GQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWY 881
Query: 491 RGFKGIIEKSA-KEGG--YIVNGTVEEIDEQSFRITELPIRKWTQDYKQFLESI-TDGSP 546
RGFKG IEK+A KEGG Y + G EE+DE + RITELPIR+W DYK FL+S+ TD
Sbjct: 882 RGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGA 941
Query: 547 NVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAMIMQEGLLKKFKLTTTISTSNMHLFDAEG 606
P +D + D+ VD ++ + E + QEG LKKFKLTTTI+TSNMHLFD +G
Sbjct: 942 ----PFFQDVKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKG 997
Query: 607 KIKKYENPEQILEEFFPLRLDYYERRKQYILENFERLLLVLDNKVRFILGVVSGEIVVSN 666
IKKY PEQILEEFF LR +YYE+RK+ +++N E LL L+NK RFIL V+SGEI+V+
Sbjct: 998 VIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNK 1057
Query: 667 RKKADLLMELQQKGFTPMPKKGKSAEPQVAGAXXXXXXXXXXXXXXXXXXXXXXXKRGDY 726
RKKAD++ +L+QKGFTP P+K +S E +AGA +Y
Sbjct: 1058 RKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEY 1117
Query: 727 EYLLSMSIGTLTLESVQXXXXXXXXXXXXXXXXXATPSKSMWM 769
+YLL+M+I +LT+E V+ T KS+W+
Sbjct: 1118 DYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWL 1160
>AT3G10690.1 | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243
REVERSE LENGTH=950
Length = 950
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 170/378 (44%), Gaps = 53/378 (14%)
Query: 309 LQRSIPSVVDGLKPGQRKILFCSFK-----KKLFKEIK--VGQFIGYVSEHSAYH-HGEQ 360
L R++P V DGLKP R+ILF + KK +K+ VG+ +G +H HG+
Sbjct: 123 LGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLG------KFHPHGDT 176
Query: 361 SLASTIIGMAQDFVGSNNINLLKPNGQFGTRNLGGKDHASSRYIYTELNPITRC-LFHEN 419
++ +++ MAQ F S L++ +G FG+ + A+ RY L+P+ L +
Sbjct: 177 AVYDSLVRMAQSF--SLRCPLIQGHGNFGS--IDADPPAAMRYTECRLDPLAEAVLLSDL 232
Query: 420 DDKLLEYL-NEDGRSIEPSWYIPIIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLL 478
D ++++ N D EP+ +P +L+NG+ GI G ++ IP +N +++ + L+
Sbjct: 233 DQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCALI 292
Query: 479 -NDETMV------------PMDPWYRGFKGIIEKSAKEGGYIV---NGTVEEIDEQSFR- 521
N E + P G G+++ G +V VE +D ++ R
Sbjct: 293 HNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKAEVELLDPKTKRN 352
Query: 522 ---ITELPIRKWTQDYKQFLESITDGSPNVKDPLIEDFRQNGDDAMVDIEIRMKLEKIAM 578
ITE+P + + ++ I + N I D R D + + I +K
Sbjct: 353 AVIITEIP---YQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPA 409
Query: 579 IMQEGLLKKFKLTTTISTSNMHLFDAEGKIKKYENPEQILEEFFPLRLDYYERRKQYILE 638
++ L + L ++ S + + + D E K+ +++L+ F R ERR ++ L
Sbjct: 410 LVLNNLYRHTALQSSFSCNMVGICDGEPKLMGL---KELLQAFIDFRCSVVERRARFKLS 466
Query: 639 N-------FERLLLVLDN 649
+ E +++ LDN
Sbjct: 467 HAQQRKHIIEGIVVGLDN 484
>AT5G04130.1 | Symbols: GYRB2 | DNA GYRASE B2 | chr5:1122084-1128031
REVERSE LENGTH=732
Length = 732
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 56 DAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
D + + + + EGDSA A G R + PLRGK+LN+ + NE
Sbjct: 504 DCSSTDPEVSEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNIERKDEAAMYKNE 560
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQN+ LGL E ++LRY ++I+ D D DG+HI+ LL+ F + +L
Sbjct: 561 EIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAG 620
Query: 176 SFMVEFTTPIIRAFHSNGTKLSFYSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQE 233
V P+ + + Y + + N NA+ + I+ +KGLG P++
Sbjct: 621 CIYVG-VPPLFKVERGKNAQYC-YDDADLKKITSNFPANAS-YNIQRFKGLGEMMPEQ 675
>AT3G10270.1 | Symbols: GYRB1 | DNA GYRASE B1 | chr3:3173805-3179756
REVERSE LENGTH=772
Length = 772
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 56 DAGGRNSDKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASNKQIMDNE 115
D + + + + EGDSA A G R + PLRGK+LN+ + NE
Sbjct: 544 DCSSTDPAESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNIERKDEAAMYKNE 600
Query: 116 EIQNIKKILGLQQNKEYSNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVP 175
EIQN+ LGL E N ++LRY ++I+ D D DG+HI+ LL+ F + +L
Sbjct: 601 EIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAG 660
Query: 176 SFMVEFTTPIIRAFHSNGTKLSF-YSMPEYESWRENLGNNATGWKIKYYKGLGTSTPQE 233
V P+ + G + + Y + + NA+ + I+ +KGLG P +
Sbjct: 661 CIYVG-VPPLFKV--ERGKQAHYCYDDAALKKITASFPGNAS-YNIQRFKGLGEMMPAQ 715
>AT2G13720.1 | Symbols: | DNA topoisomerase (ATP-hydrolyzing)s;ATP
binding;DNA binding | chr2:5724039-5725248 FORWARD
LENGTH=223
Length = 223
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 168 WPSLLKVP------SFMVEFTTPIIRAFHSNGTKLSFYSMPEYESWRENLGNNATG---- 217
WP + +VP SF+ TP ++ + ++ + S+ + N G
Sbjct: 27 WPRV-RVPRDGLKSSFITVLVTPYVKVSRLTFSSHKYFIVLTNLSYVTSTLNTRNGKMKD 85
Query: 218 ------WKIKYYKGLGTSTPQEGREYFRDLGKHRKDFVWEDDYDGSAIEMAFSKKKAEDR 271
W IK+YKG+ +E + ++ ++++ F+W D+ +A+E AF + + +
Sbjct: 86 RNYLNRWTIKFYKGVWVQVMRE-KNVLSNVDQNKRFFIW-DEGSEAALENAFGTSEDKQK 143
Query: 272 KVWIRNFEPGNYRDHVASRINYKDFVNKELILFSRADLQR 311
K WI + PG + D +I Y DFV K+L L+ QR
Sbjct: 144 K-WIEKYVPGTFLDSKKQQIMYSDFVTKKLKLYFTTSNQR 182