Miyakogusa Predicted Gene
- Lj3g3v0824920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0824920.1 Non Chatacterized Hit- tr|B9RVL4|B9RVL4_RICCO
Polyamine oxidase, putative OS=Ricinus communis GN=RCO,76.25,0,no
description,NULL; seg,NULL; FAD/NAD(P)-binding domain,NULL; FAD-linked
reductases, C-terminal dom,CUFF.41523.1
(518 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 ... 664 0.0
AT2G43020.1 | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 | chr2... 134 1e-31
AT3G59050.1 | Symbols: ATPAO3, PAO3 | polyamine oxidase 3 | chr3... 116 5e-26
AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1... 115 6e-26
AT4G16310.1 | Symbols: LDL3 | LSD1-like 3 | chr4:9218636-9224764... 107 3e-23
AT3G10390.1 | Symbols: FLD | Flavin containing amine oxidoreduct... 104 1e-22
AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-l... 104 2e-22
AT3G13682.1 | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509 ... 93 5e-19
AT4G29720.1 | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4... 70 4e-12
>AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 |
chr5:4420222-4422974 REVERSE LENGTH=472
Length = 472
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/436 (73%), Positives = 364/436 (83%), Gaps = 20/436 (4%)
Query: 27 KVLAENDVEDLVILEASDRIGGRIRKEPFGGVSAELGAGWIVGVGGRKINPIWELAAEHG 86
KVL EN VED++ILEA+DRIGGRI K+ FG V ELGAGWI GVGG++ NP+WELA+
Sbjct: 20 KVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFN 79
Query: 87 LRTCFSDYSNARYNIYDRSGKIFPSGIAADSYQKAVDSAIQKLRNQEEAKFEAXXXXXXX 146
LRTCFSDY+NAR+NIYDRSGKIFP+GIA+DSY+KAVDSAI KL++ EA+
Sbjct: 80 LRTCFSDYTNARFNIYDRSGKIFPTGIASDSYKKAVDSAILKLKSL-EAQCSGQVAE--- 135
Query: 147 XXXXXXXXXXXXFKLTKLPPSPETPIELAIDFILHDFEMPEVEPIATYVDYGEKEFLVAD 206
+ P SP+TPIELAIDFILHDFEM EVEPI+TYVD+GE+EFLVAD
Sbjct: 136 ----------------EAPSSPKTPIELAIDFILHDFEMAEVEPISTYVDFGEREFLVAD 179
Query: 207 ERGYDYLLYKMAEEFLFTSEGRILDDRLKLNKVVRELQHSRNGVKVITEDGCVYEANYVI 266
ERGY+ LLYKMAEEFL TS G ILD RLKLN+VVRE+Q SRNGV V TEDG VYEANYVI
Sbjct: 180 ERGYECLLYKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANYVI 239
Query: 267 LSVSIGVLKSDLLAFNPPLPRWKLEAFKKCDVMVYTKIFLKFPYKFWPSGPEKEFFIYAH 326
+S SIGVL+SDLL+F P LPRWK EA +KCDVMVYTKIFLKFP FWP GP +EFFIYAH
Sbjct: 240 VSASIGVLQSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAH 299
Query: 327 ERRGYYTFWQHMENAYPGSNILVVTITNGESKRVEAQSDEDTLREAMAVLRDMFGPDIPD 386
E+RGY+TFWQHMENAYPGSNILVVT+TN +SKRVEAQSD++T++EAM+VLRDMFG IP
Sbjct: 300 EQRGYFTFWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFGATIPY 359
Query: 387 AIDILVPRWWNNRFQRGSYSNYPIISNRKVCRNIKAPVDHIFFTGEHTSEKFSGYVHGAY 446
A DILVPRWWNNRFQRGSYSNYP+IS+ ++ +NIKAPV IFFTGEHTSEKFSGYVHG Y
Sbjct: 360 ATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGY 419
Query: 447 LAGIDTSKSLLEEMRK 462
LAGIDTSKSLLEEM++
Sbjct: 420 LAGIDTSKSLLEEMKQ 435
>AT2G43020.1 | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 |
chr2:17891945-17894440 FORWARD LENGTH=490
Length = 490
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 197/438 (44%), Gaps = 63/438 (14%)
Query: 37 LVILEASDRIGGRIRKEPFGGVSAELGAGWIVGVGGRKINPIWELAAEHGL--------R 88
+++LE+ DRIGGR+ + G +LGA W+ GV K NP+ + GL
Sbjct: 53 VMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC--KENPLAPVIGRLGLPLYRTSGDN 110
Query: 89 TCFSDYSNARYNIYDRSGKIFPSGIAAD---SYQKAVDSAIQKLRNQEEAKFEAXXXXXX 145
+ D+ Y ++D G P + ++++ ++ I K+R++++A
Sbjct: 111 SVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEE-INKVRDEQDADIS------- 162
Query: 146 XXXXXXXXXXXXXFKLTKLPPSPETPIE-LAIDFI------LHDFEMPEVEPIATYVDYG 198
F + PE +E LA + + + + + E I+ +
Sbjct: 163 ---------ISQAFSIV-FSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKC-WD 211
Query: 199 EKEFLVADE----RGYDYLLYKMAEEFLFTSEGRILDDRL--KLNKVVRELQHSRNGVKV 252
++E L RGY ++ +A+ LD R+ ++ K+VR NGVKV
Sbjct: 212 QEELLPGGHGLMVRGYRPVINTLAKG---------LDIRVGHRVTKIVRRY----NGVKV 258
Query: 253 ITEDGCVYEANYVILSVSIGVLKSDLLAFNPPLPRWKLEAFKKCDVMVYTKIFLKFPYKF 312
TE+G + A+ +++V +GVLKS + F P LP WK EA V + KI L F F
Sbjct: 259 TTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVF 318
Query: 313 WPSGPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTITNGESKRVEAQSDEDTLREA 372
W P+ EF E +++ ++ A G +LV +K +E SDE A
Sbjct: 319 W---PKVEFLGVVAETSYGCSYFLNLHKA-TGHPVLVYMPAGQLAKDIEKMSDEAAANFA 374
Query: 373 MAVLRDMFGPDIPDAIDILVPRWWNNRFQRGSYSNYPIISNRKVCRNIKAPVDHIFFTGE 432
+ L+ + PD + LV RW ++ GSYS + + ++ PVD++FF GE
Sbjct: 375 VLQLQRIL-PDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGE 433
Query: 433 HTSEKFSGYVHGAYLAGI 450
TS F G VHGAY G+
Sbjct: 434 ATSSSFPGSVHGAYSTGL 451
>AT3G59050.1 | Symbols: ATPAO3, PAO3 | polyamine oxidase 3 |
chr3:21824932-21827173 REVERSE LENGTH=488
Length = 488
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 11/220 (5%)
Query: 234 LKLNKVVRELQHSRNGVKVITEDGCVYEANYVILSVSIGVLKSDLLAFNPPLPRWKLEAF 293
++L+ + ++ +GVKV TE G + A+ ++++ +GVLKS ++ F P LP+WK EA
Sbjct: 241 IRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAI 300
Query: 294 KKCDVMVYTKIFLKFPYKFWPSGPEKEFF-IYAHERRGYYTFWQ-HMENAYPGSNILVVT 351
V + KI L F FWP+ EF + A G F H ++P +LV
Sbjct: 301 NDLGVGIENKIILNFDNVFWPN---VEFLGVVAETSYGCSYFLNLHKATSHP---VLVYM 354
Query: 352 ITNGESKRVEAQSDEDTLREAMAVLRDMFGPDIPDAIDILVPRWWNNRFQRGSYSNYPII 411
++ +E +SDE A + L+ + PD I+ LV RW ++ GSYS Y I+
Sbjct: 355 PAGQLARDIEKKSDEAAANFAFSQLQKIL-PDASSPINYLVSRWGSDINSLGSYS-YDIV 412
Query: 412 SN-RKVCRNIKAPVDHIFFTGEHTSEKFSGYVHGAYLAGI 450
+ + ++ P+D++FF GE TS + G VHGAY G+
Sbjct: 413 NKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGV 452
>AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 |
chr1:24490173-24492728 FORWARD LENGTH=497
Length = 497
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 15/248 (6%)
Query: 208 RGYDYLLYKMAEEFLFTSEGRILDDRLKLNKVVRELQHSRNGVKVITEDGCVYEANYVIL 267
+GY+ ++ +A++ LD RL ++V + ++ S N V V E G + A+ VI+
Sbjct: 226 QGYEPVIRTIAKD---------LDIRLN-HRVTKVVRTSNNKVIVAVEGGTNFVADAVII 275
Query: 268 SVSIGVLKSDLLAFNPPLPRWKLEAFKKCDVMVYTKIFLKFPYKFWPSGPEKEFFIYAHE 327
+V IGVLK++L+ F P LP+WK A V KI L+F FWP+ EF
Sbjct: 276 TVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPN---VEFLGMVAP 332
Query: 328 RRGYYTFWQHMENAYPGSNILVVTITNGESKRVEAQSDEDTLREAMAVLRDMFGPDIPDA 387
++ ++ A G +LV ++ +E SDE T M L+ MF PD PD
Sbjct: 333 TSYACGYFLNLHKA-TGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMF-PDAPDP 390
Query: 388 IDILVPRWWNNRFQRGSYSNYPIISNRKVCRNIKAPVDHIFFTGEHTSEKFSGYVHGAYL 447
LV RW + G Y+ + + + PVD+IFF GE + + G HGA+L
Sbjct: 391 AQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFL 450
Query: 448 AGIDTSKS 455
AG+ S++
Sbjct: 451 AGVSASQN 458
>AT4G16310.1 | Symbols: LDL3 | LSD1-like 3 | chr4:9218636-9224764
FORWARD LENGTH=1628
Length = 1628
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 17/250 (6%)
Query: 234 LKLNKVVRE---------LQHSRNGVKVITEDGCVYEANYVILSVSIGVLKSDLLAFNPP 284
+ LNK+V + + +S++ V+V T +GC Y + V+++V +G LK++ + F+PP
Sbjct: 868 IHLNKIVSDVSYVSDVSAMDNSKHKVRVSTSNGCEYLGDAVLVTVPLGCLKAETIKFSPP 927
Query: 285 LPRWKLEAFKKCDVMVYTKIFLKFPYKFWPSGPEKEFFIYAHE---RRGYYTFWQHMENA 341
LP WK + K+ V K+ L+FP FW + F A E R + FW +
Sbjct: 928 LPDWKYASIKQLGFGVLNKVVLEFPTVFWDDSVDY-FGATAEETDLRGECFMFWNVKKTV 986
Query: 342 YPGSNILVVTITNGESKRVEAQSDEDTLREAMAVLRDMFGPD-IPDAIDILVPRWWNNRF 400
G+ +L+ + + +S + + AM VLR +FG D +PD + +V W + +
Sbjct: 987 --GAPVLIALVVGKAAFEYTNKSKSEHVNHAMMVLRKLFGGDLVPDPVASVVTDWGTDPY 1044
Query: 401 QRGSYSNYPIISNRKVCRNIKAPVDH-IFFTGEHTSEKFSGYVHGAYLAGIDTSKSLLEE 459
G+YS I ++ + + PV + +FF GE T ++ V GA + G+ + +++
Sbjct: 1045 SYGAYSYVAIGASGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREAVRIIDI 1104
Query: 460 MRKDKETKSE 469
+R + +E
Sbjct: 1105 LRSGNDYTAE 1114
>AT3G10390.1 | Symbols: FLD | Flavin containing amine oxidoreductase
family protein | chr3:3229293-3232345 FORWARD LENGTH=884
Length = 884
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Query: 238 KVVRELQHSRNGVKVITEDGCVYEANYVILSVSIGVLKSDLLAFNPPLPRWKLEAFKKCD 297
K V+ +++ NGVKV T VYE + V+ +V +GVLK+ + F P LP+ KL+ K+
Sbjct: 397 KTVQTIRYGSNGVKV-TAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455
Query: 298 VMVYTKIFLKFPYKFWPSGPEKEFFIYAHE----RRGYYTFWQHMENAYPGSNILVVTIT 353
+ K+ + FPY FW + + + F + E R ++ F+ + A G +L+ +
Sbjct: 456 FGLLNKVAMLFPYVFWST--DLDTFGHLTEDPNYRGEFFLFYSYAPVA--GGALLIALVA 511
Query: 354 NGESKRVEAQSDEDTLREAMAVLRDMFGP---DIPDAIDILVPRWWNNRFQRGSYSNYPI 410
+ + E D + + +LR ++ P ++PD + + RW + F GSYSN +
Sbjct: 512 GEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAV 571
Query: 411 ISNRKVCRNIKAPV--DHIFFTGEHTSEKFSGYVHGAYLAGIDTSKSLLEEMR 461
++ + V +FF GE T+ ++ +HGA++ G+ + ++ + +
Sbjct: 572 GASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624
>AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like
1 | chr1:23264638-23267172 REVERSE LENGTH=844
Length = 844
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 51/456 (11%)
Query: 37 LVILEASDRIGGRIRKEPFGG-----VSAELGAGWIVGVGGRKINPIWELAAEHGLRTCF 91
+++LE DR GGR++ G A++G + G+ G NP+ LA + GL
Sbjct: 291 VLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVLTGING---NPLGVLARQLGL---- 343
Query: 92 SDYSNARYNIYDRSGKIFPSGIAADSYQKAVDSAIQKLRNQ---EEAKFEAXXXXXXXXX 148
+ + D P+G AD+ +VDS I+ N+ K
Sbjct: 344 -----PLHKVRDICPLYLPNGELADA---SVDSKIEASFNKLLDRVCKLRQSMIEENKSV 395
Query: 149 XXXXXXXXXXFKLTKLPPSPETPIELAIDFILHDFEMPEVEPIATYVDYGEKEFLVAD-- 206
F+L + + + +D+ L + E AT + + D
Sbjct: 396 DVPLGEALETFRLV-YGVAEDQQERMLLDWHLANLEYAN----ATLLGNLSMAYWDQDDP 450
Query: 207 -ERGYDYLLYKMAEEFLFTSEGRILDDRLKL--NKVVRELQHSRNGVKVITEDGCVYEAN 263
E G D+ E + L + L + V +++ NGV V T + + +
Sbjct: 451 YEMGGDHCFIPGGNEIFVHA----LAENLPIFYGSTVESIRYGSNGVLVYTGNK-EFHCD 505
Query: 264 YVILSVSIGVLKSDLLAFNPPLPRWKLEAFKKCDVMVYTKIFLKFPYKFWPSGPEKEFFI 323
+ +V +GVLK + F P LP K EA ++ + K+ + FP FW G E + F
Sbjct: 506 MALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFW--GEEIDTFG 563
Query: 324 YAHE----RRGYYTFWQHMENAYPGSNILVVTITNGESKRVEAQSDEDTLREAMAVLRDM 379
E R ++ F+ + ++ G +LV + ++R E S D+++ + +LR +
Sbjct: 564 RLTEDPSTRGEFFLFYSY--SSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGI 621
Query: 380 FGPD---IPDAIDILVPRWWNNRFQRGSYSNYPIISNRKVCRNIKAPV--DHIFFTGEHT 434
+ P +PD + L RW ++F GSYS + S+ + V +FF GE T
Sbjct: 622 YHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEAT 681
Query: 435 SEKFSGYVHGAYLAGIDTSKSLLEEMRKDKETKSEN 470
+ ++ +HGA+L+G+ + ++L R+ + + N
Sbjct: 682 NRQYPATMHGAFLSGMREAANILRVARRRASSSALN 717
>AT3G13682.1 | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509
REVERSE LENGTH=746
Length = 746
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 15/229 (6%)
Query: 238 KVVRELQHSRNGVKVITEDGCVYEANYVILSVSIGVLKSDLLAFNPPLPRWKLEAFKKCD 297
K V +++ GV+VI+ +++A+ ++ +V +GVLK + F P LPR K A +
Sbjct: 372 KSVDTIKYGDGGVEVIS-GSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLG 430
Query: 298 VMVYTKIFLKFPYKFWPSGPEKEFFIYAHE----RRGYYTFWQHMENAYPGSNILVVTIT 353
+ K+ + FP FW G E + F +E R ++ F+ + + G LV +
Sbjct: 431 FGLLNKVAMLFPSVFW--GDELDTFGCLNESSINRGEFFLFYAY--HTVSGGPALVALVA 486
Query: 354 NGESKRVEAQSDEDTLREAMAVLRDMFGPD---IPDAIDILVPRWWNNRFQRGSYSNYPI 410
++R E L + LR ++GP +PD I + RW ++ GSYS+ +
Sbjct: 487 GEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVCTRWGSDPLSYGSYSHVRV 546
Query: 411 ISNRKVCRNIKAP--VDHIFFTGEHTSEKFSGYVHGAYLAGIDTSKSLL 457
S+ V +I A + +FF GE T+ + +HGAYL+G+ + +L
Sbjct: 547 GSS-GVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREASKIL 594
>AT4G29720.1 | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 |
chr4:14553456-14555057 REVERSE LENGTH=533
Length = 533
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 49/276 (17%)
Query: 234 LKLNKVVRELQHSRNGVKVITEDGCVYEANYVILSVSIGVLK----SDLLAFNPPLPRWK 289
++LN+ V +++ N VK+ DG V A++VI++VS+GVLK +D F+PPLP +K
Sbjct: 256 IQLNRKVTKIEWQSNEVKLHFSDGSVVFADHVIVTVSLGVLKAGIETDAELFSPPLPDFK 315
Query: 290 LEAFKKCDVMVYTKIFLKFPYKFWPSGPEKEFFIYAHERRGYYTFWQHMENA-----YPG 344
+A ++ V K+F++ + +PS + F E R W A +
Sbjct: 316 SDAIRRLGYGVVNKLFVEMSQRKFPS-LQLVFDREDSEFRFVKIPWWMRRTATITPIHSN 374
Query: 345 SNILVVTITNGESKRVEAQSDEDTLREAMAVLRDMFGPDIPD------------------ 386
S +L+ E+ +E +DE+ M + + G ++ +
Sbjct: 375 SKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKPLTNGSLNDDDEAM 434
Query: 387 -AIDILVPRWWNNRFQRGSYSNYPIIS---------------NRKVCR-----NIKAPVD 425
+L +W ++ RGSYS + S N+KV + K
Sbjct: 435 KITKVLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHEL 494
Query: 426 HIFFTGEHTSEKFSGYVHGAYLAGIDTSKSLLEEMR 461
+ F GE T HGAY +G+ + LL+ +
Sbjct: 495 QVMFAGEATHRTHYSTTHGAYYSGLREANRLLKHYK 530