Miyakogusa Predicted Gene

Lj3g3v0824890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0824890.1 Non Chatacterized Hit- tr|C5X1A9|C5X1A9_SORBI
Putative uncharacterized protein Sb01g008660
OS=Sorghu,32.22,1e-18,UPF0114,Uncharacterised protein family UPF0114;
seg,NULL; FAMILY NOT NAMED,NULL,CUFF.41520.1
         (282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13720.1 | Symbols:  | Uncharacterised protein family (UPF011...   308   3e-84
AT4G19390.1 | Symbols:  | Uncharacterised protein family (UPF011...   167   1e-41

>AT5G13720.1 | Symbols:  | Uncharacterised protein family (UPF0114)
           | chr5:4427960-4429029 FORWARD LENGTH=262
          Length = 262

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 164/194 (84%)

Query: 89  NGSPIVRMVRATESSIERIIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIFDAYKVYWTCC 148
           + SP  +  R+TES++ERIIFDFRF               CFLNGC+YI +AYKVYWT C
Sbjct: 68  DDSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNC 127

Query: 149 VKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFG 208
            KG+H+G+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS++P DVPP  DRAL+ SSLFG
Sbjct: 128 SKGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFG 187

Query: 209 MFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLS 268
           MFA+KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFLS
Sbjct: 188 MFAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLS 247

Query: 269 SASLYILHNLHKTD 282
           SASLYILHNLHK +
Sbjct: 248 SASLYILHNLHKGE 261


>AT4G19390.1 | Symbols:  | Uncharacterised protein family (UPF0114)
           | chr4:10574903-10576355 REVERSE LENGTH=273
          Length = 273

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 6/182 (3%)

Query: 98  RATESSIERIIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIFDAYKVYWTCCVKGVHSGKM 157
            A E  IE++I+  RF               CF+ GC+Y+ D++  Y       V+ GK+
Sbjct: 95  EALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGKV 148

Query: 158 VLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFALKERPK 217
           +  LVEAID+YL GTVML+FG+GLY LFISN       + D     SSLFGMF LKERP+
Sbjct: 149 IFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQ 208

Query: 218 WMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSASLYILHN 277
           W+++ S+ ELKTK+GHVIVM+LL+ +F++SK V I++  DLL  SV IF SSA L++L  
Sbjct: 209 WLEVKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLSR 268

Query: 278 LH 279
           L+
Sbjct: 269 LN 270