Miyakogusa Predicted Gene

Lj3g3v0824870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0824870.1 Non Chatacterized Hit- tr|I1NHX5|I1NHX5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24950 PE,77.76,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; STRUCTURAL
MAINTENANCE OF CHROMOSOMES 5 S,CUFF.41547.1
         (1052 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromoso...  1251   0.0  
AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing n...    69   2e-11
AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromos...    68   4e-11
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo...    58   4e-08
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan...    55   4e-07
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso...    54   4e-07
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural...    51   3e-06

>AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromosomes 5
            | chr5:5196210-5199559 FORWARD LENGTH=1053
          Length = 1053

 Score = 1251 bits (3238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1041 (59%), Positives = 775/1041 (74%), Gaps = 1/1041 (0%)

Query: 1    MAESRPPKRSKITRGEDDYMPGNILEIELHNFMTFDYLKCKPAPRLNLVIGPNGSGKSSL 60
            M+E R  KR KI+RGEDD++PGNI+EIELHNFMTF++L CKP  RLNLVIGPNGSGKSSL
Sbjct: 1    MSERRA-KRPKISRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSL 59

Query: 61   VCAIALGLGGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKEERLIIMRKINTNNKSE 120
            VCAIAL LGGEPQLLGRATS+GAYVKRGE+SGY+KI+LRG+ +EE L I RKI+T NKSE
Sbjct: 60   VCAIALCLGGEPQLLGRATSVGAYVKRGEDSGYVKISLRGNTREENLTIFRKIDTRNKSE 119

Query: 121  WLFNGNVVPKKDVAESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQL 180
            W+FNG+ V KKD+ E IQ+FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQL
Sbjct: 120  WMFNGSTVSKKDIVEIIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQL 179

Query: 181  PEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRDELLAKAESMKK 240
            P  HRAL++KSR LK +E ++ KN  TL QLK    E EKDVERVRQR+  L K +SMKK
Sbjct: 180  PVHHRALVEKSRDLKQLERAVAKNGETLNQLKALVDEQEKDVERVRQRELFLTKVDSMKK 239

Query: 241  KLPWLRYDMKQAEYREAKKRXXXXXXXXXXXXXXXXXXXXPIKKQKDEKAALDANCKKVS 300
            KLPWL+YDMK+AEY +AKKR                    PI+KQK EKA  D+ CKKV 
Sbjct: 240  KLPWLKYDMKKAEYMDAKKRMKEAEKKLDEAAKNLNSMKEPIEKQKKEKAETDSKCKKVK 299

Query: 301  SRLSDNAKKRMDLREKDSQLDVELQGKYKDMEELRGQEKSRQQXXXXXXXXXXXXXXXXX 360
            + +  N + R  L EK+ + D  +   YK++EEL+ QE+ RQ+                 
Sbjct: 300  NLMDANGRNRCHLLEKEDEADARVVATYKELEELKKQEEHRQERILKATEDLVAAERELQ 359

Query: 361  NLHPFVPPKDELQRLKDEIRRLDTSASQVRQNRSQAESEIKHKKSLLMRCKERLRDMNNK 420
            NL  +  P  +L+ L  ++  L  S +  +  +   E  +  K+  L +C ++L+DM N 
Sbjct: 360  NLPVYERPVAKLEELSSQVTELHHSINGKKNQKEDNEKLLSQKRYTLRQCVDKLKDMENA 419

Query: 421  STKCLLALQKSGVDKIFEAYKWVQENRNQFNKEVFGPVLLEVNVPNREHARYLEGHVAYY 480
            + K L AL  SG D+IF+AY+WVQ+NR++F +EV+GPVL+EVNVPNRE+A +LEGHV++Y
Sbjct: 420  NNKLLKALANSGADRIFDAYQWVQQNRHEFKREVYGPVLVEVNVPNRENACFLEGHVSFY 479

Query: 481  VWKSFMTQDSRDRDLLAKNLKFFDVPILNYTGGDGHPIRPFEISEDMRALGINSRLDQIF 540
            +WKSF+TQD  DRDLL KNLK FDVP+LNY G  G+   PF IS+ MR+LGI++RLDQIF
Sbjct: 480  IWKSFITQDPEDRDLLVKNLKRFDVPVLNYVGNSGNQKAPFHISDQMRSLGIHARLDQIF 539

Query: 541  DAPVAVKEMLIKNSSLDNSYIGTKETDQKSEVVPRLGIMDLWTPENHYRWSGSRYGNHVS 600
            DAP AVKE+L     L++SYIG+K TDQ++E V +LGI D WTP+NHYRWS SRYG H S
Sbjct: 540  DAPDAVKEVLNSQFGLEDSYIGSKITDQRAEEVYKLGIKDFWTPDNHYRWSSSRYGGHSS 599

Query: 601  ASVEQVNPPDLLSNTSNVGXXXXXXXXXXXXXXQIAPLEESIKRSQDEERSLQNQAADLR 660
            ASV+ V    LL    +VG               I  +EE+ K  Q E+R L+ +AA L 
Sbjct: 600  ASVDSVYQSRLLLCGVDVGELEKLRSRKEELEDSILFMEETHKSLQTEQRRLEEEAAKLH 659

Query: 661  KQWETVSTTAQNEQRKRKEIVHRIEQRKGILKSMEEKVDMDTEIAKLVEQATKCNIQRFH 720
            K+ E +   +  E++KR+E+  R +QRK  L+S+E++ DMD  +AKL++QA++ N  R+ 
Sbjct: 660  KEREEIVNVSYLEKKKRRELESRYQQRKTKLESLEQEEDMDASVAKLIDQASRANADRYT 719

Query: 721  NSIKIKDLLVEAMGYRQNVVELRMSLIEFEAKIGEMEANLKQHDKFALQASLHFDNCKKE 780
             +I +K LLVEA+ ++ +  E  M+ IE E KI E E N+KQ++K A Q SL  + CKKE
Sbjct: 720  YAINLKKLLVEAVAHKWSYAEKHMASIELERKIRESEINIKQYEKTAQQLSLAVEYCKKE 779

Query: 781  AENCKQQLTDSLNYAKSIARLTPELEKEFLEMPTTIEELEAAIQDTTSQANSILFVNHNI 840
             E  +Q+L  +   A+S+A +TPEL+KEF+EMPTT+EELEAAIQD  SQANSILF+N NI
Sbjct: 780  VEGKQQRLATAKRDAESVATITPELKKEFMEMPTTVEELEAAIQDNLSQANSILFINENI 839

Query: 841  LEQYEHRQRQIEDLAAKLEADKNECRRCLAELDNIKGKWLPTLRNLVAQINETFRCNFQE 900
            L++YEHRQ QI  ++ KLE DK +   C+ E+D++K KWLPTLR LV QINETF  NFQE
Sbjct: 840  LQEYEHRQSQIYTISTKLETDKRDLSICMKEIDSLKEKWLPTLRQLVGQINETFSHNFQE 899

Query: 901  MAVAGEVSLDEHDTNFDQFGIHIKVKFRENGQLQILSAHHQSGGERSVSTIVYLVSLQDL 960
            MAVAGEVSLDE DT+FDQ+GIHIKVKFRE+GQLQ+LS+HHQSGGERSVSTI+YLVSLQDL
Sbjct: 900  MAVAGEVSLDERDTDFDQYGIHIKVKFRESGQLQVLSSHHQSGGERSVSTILYLVSLQDL 959

Query: 961  TNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILN 1020
            TNCPFRVVDEINQGMDPINERKMFQQLVRAAS+PNTPQCFLLTPKLLP+L+YSEACSILN
Sbjct: 960  TNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPELEYSEACSILN 1019

Query: 1021 VMNGPWIEQPSKVWTTGDPWS 1041
            +MNGP+I +PSKVW+ GD W 
Sbjct: 1020 IMNGPYIAEPSKVWSLGDSWG 1040


>AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing
           nucleoside triphosphate hydrolases superfamily protein |
           chr5:24714551-24721841 REVERSE LENGTH=1057
          Length = 1057

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 13  TRGEDDYM-----PGNILEIELHNFMTFDYLKCKPAPRLNLVIGPNGSGKSSLVCAIALG 67
            R  D ++      G+IL I++ NFM    L+ +    +N + G NGSGKS+++ A+ + 
Sbjct: 6   ARASDSFIKQRSGSGSILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVA 65

Query: 68  LGGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKEE--------RLIIMRKINTNNKS 119
            G   +   RA ++  ++K G     +++ ++   ++          +II R+I  +  +
Sbjct: 66  FGCRARGTQRAATLKDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATA 125

Query: 120 EWL--FNGNVVPKK--DVAESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAV 175
             L  + G  V  K  ++ E ++ FNI V N    + QD+  EF  L      ++ +   
Sbjct: 126 TVLKDYLGKKVSNKRDELRELVEHFNIDVENPCVVMSQDKSREF--LHSGNDKDKFKFFF 183

Query: 176 GDPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRDELLAKA 235
               L + +  L      L      +++ E T+K +++  +EL   ++ + Q +E+  + 
Sbjct: 184 KATLLQQVNDLLQSIYEHLTKATAIVDELENTIKPIEKEISELRGKIKNMEQVEEIAQRL 243

Query: 236 ESMKKKLPW 244
           + +KKKL W
Sbjct: 244 QQLKKKLAW 252



 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 844  YEHRQRQIEDLAAKLEADKNECRRCLAELDNIKGKWLPTLRN---LVAQINETFRCNFQE 900
            YE  +R+I   A K ++ ++   + +A  + +  +W    RN   L  Q+   F  +  +
Sbjct: 880  YESLERKI---AKKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGK 936

Query: 901  MAVAGEVSLDEHDTNFDQFGIHIKVKFRENGQLQIL-SAHHQSGGERSVSTIVYLVSLQD 959
              ++G + +     +++   + I+VK  ++    ++      SGGERS ST+ + ++L +
Sbjct: 937  KGISGHIKV-----SYENKTLSIEVKMPQDATSNVVRDTKGLSGGERSFSTLCFALALHE 991

Query: 960  LTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTP 1004
            +T  PFR +DE +  MD ++ +     LV  A    + Q   +TP
Sbjct: 992  MTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGS-QWMFITP 1035


>AT5G07660.1 | Symbols: SMC6A | structural maintenance of
           chromosomes 6A | chr5:2422839-2429912 FORWARD
           LENGTH=1058
          Length = 1058

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 40/248 (16%)

Query: 22  GNILEIELHNFMTFDYLKCKPAPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATSI 81
           G IL I L NFM    L+ +    +N + G NGSGKS+++ A+ +  G   +   RA ++
Sbjct: 21  GKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATL 80

Query: 82  GAYVKRGEESGYIKITLRGDHKE--------ERLIIMRKINTNNKSEWL--FNGNVVP-- 129
             ++K G     + + L+   ++        + LII R+I+ +     L    G  +   
Sbjct: 81  KDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140

Query: 130 KKDVAESIQRFNIQVNNLTQFLPQDRVCEFA-------------KLTPVQLLEETEKAVG 176
           K+++ E ++ +NI V N    + QD+  EF              K T +Q +++  +++G
Sbjct: 141 KEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDILQSIG 200

Query: 177 DPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRDELLAKAE 236
                      ++ + AL      L++ E T+K +++   EL + ++ +   +E+  +  
Sbjct: 201 TK---------LNSANAL------LDEMEKTIKPIEKEINELLEKIKNMEHVEEITQQVL 245

Query: 237 SMKKKLPW 244
            +KKKL W
Sbjct: 246 HLKKKLAW 253



 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 836  VNHNILEQYEHRQRQIEDL-------AAKLEADKNECRRCLAEL----DNIKGKWLPTLR 884
            +NH +  + E+    I+DL         K+   +   + C  +L    D +  +W    R
Sbjct: 859  INHRLKRENENYSESIDDLRIMHGEKEQKIGKKRKTYKSCREKLKVCKDAVDSRWNKLQR 918

Query: 885  N---LVAQINETFRCNFQEMAVAGEVSLDEHDTNFDQFGIHIKVKFRENG-QLQILSAHH 940
            N   L  ++   F  +  +  ++G + +   D         I+VK  ++     +     
Sbjct: 919  NKDLLKRELTWQFNHHLGKKGISGNIRVSYEDKTLS-----IEVKMPQDATNSAVRDTRG 973

Query: 941  QSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCF 1000
             SGGERS ST+ + ++LQ++T  P R +DE +  MD ++ +     L+  A K  + Q  
Sbjct: 974  LSGGERSFSTLCFTLALQNMTEAPIRAMDEFDVFMDAVSRKISLDTLIDFALKQGS-QWM 1032

Query: 1001 LLTP 1004
             +TP
Sbjct: 1033 FITP 1036


>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of
           chromosomes (SMC) family protein |
           chr3:17486765-17493178 FORWARD LENGTH=1171
          Length = 1171

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 23  NILEIELHNFMTFDYLKCKPA--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATS 80
           +I EI L  F ++      P   P  N + G NGSGKS+++ +I   LG       RA +
Sbjct: 2   HIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61

Query: 81  IGAYVKRGEESGYIKITLR-------------GDHKEERLIIMRKINTNNKSEWLFNGNV 127
           +   V +  ++G  + T+              G      + + R+I    K+++L NG +
Sbjct: 62  LQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKL 121

Query: 128 VPKKDVAESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRAL 187
                V        + VNN    + Q R+ +   + P+++L   E+A G      +  A 
Sbjct: 122 AQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGTRMYENKKEA- 180

Query: 188 IDKSRALKHIELSLEKNEGTLKQLKERNAELEKDV 222
                ALK    +LEK +    ++ E N  LEKD+
Sbjct: 181 -----ALK----TLEKKQ---TKVDEINKLLEKDI 203


>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
           of chromosomes (SMC) family protein |
           chr3:20235818-20243701 FORWARD LENGTH=1238
          Length = 1238

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 22  GNILEIELHNFMTF-DYLKCKPAPRLNLVIGPNGSGKSSLVCAIALGLGGEP-QLLGRAT 79
           G IL++E+ NF ++  +    P      +IGPNGSGKS+L+ AI+  LG    QL G   
Sbjct: 9   GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68

Query: 80  S--IGAYVKRGEE----SGYIKITLRGDHKEERLIIMRKINTNNKSEWLFNGNVVPKKDV 133
              I A+  R +E      ++++  + D   E L   R I +   SE+  +  VV   + 
Sbjct: 69  KDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDEY 127

Query: 134 AESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDK 190
              ++   I V      + Q  V   A   P +L    E+  G  +L +++  L +K
Sbjct: 128 NGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEK 184


>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
           (SMC) family protein | chr3:20235818-20243701 FORWARD
           LENGTH=1239
          Length = 1239

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 22  GNILEIELHNFMTF-DYLKCKPAPRLNLVIGPNGSGKSSLVCAIALGLGGEP-QLLGRAT 79
           G IL++E+ NF ++  +    P      +IGPNGSGKS+L+ AI+  LG    QL G   
Sbjct: 9   GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68

Query: 80  S--IGAYVKRGEE----SGYIKITLRGDHKEERLIIMRKINTNNKSEWLFNGNVVPKKDV 133
              I A+  R +E      ++++  + D   E L   R I +   SE+  +  VV   + 
Sbjct: 69  KDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDEY 127

Query: 134 AESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDK 190
              ++   I V      + Q  V   A   P +L    E+  G  +L +++  L +K
Sbjct: 128 NGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEK 184


>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
           maintenance of chromosomes 2 | chr5:25056308-25062436
           FORWARD LENGTH=1175
          Length = 1175

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 23  NILEIELHNFMTFDYLKCKPA--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATS 80
           +I EI L  F ++          P  N + G NGSGKS+++ +I   LG       RA +
Sbjct: 2   HIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61

Query: 81  IGAYVKRGEESGYIKITLR-------------GDHKEERLIIMRKINTNNKSEWLFNGNV 127
           +   V +  ++G  K T+              G  +   + + R+I    ++++L NG +
Sbjct: 62  LQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGKL 121

Query: 128 VPKKDVAESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVG 176
                V        + VNN    + Q R+ +   + P ++L   E+A G
Sbjct: 122 AQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170