Miyakogusa Predicted Gene
- Lj3g3v0824810.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0824810.3 Non Chatacterized Hit- tr|I1NHX5|I1NHX5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24950
PE,73.19,0,STRUCTURAL MAINTENANCE OF CHROMOSOMES 5 SMC5,NULL;
STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, ,CUFF.41527.3
(1052 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromoso... 1189 0.0
AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing n... 69 2e-11
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 65 2e-10
AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromos... 64 6e-10
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 59 1e-08
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 56 1e-07
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 56 1e-07
>AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromosomes 5
| chr5:5196210-5199559 FORWARD LENGTH=1053
Length = 1053
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1049 (57%), Positives = 767/1049 (73%), Gaps = 1/1049 (0%)
Query: 5 RSPKRHKITRGEDDYMPGNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAI 64
R KR KI+RGEDD++PGNI+EIEL NFMTF++L CKPG RLNLVIGPNGSGKSSLVCAI
Sbjct: 4 RRAKRPKISRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAI 63
Query: 65 ALGLGGEPQLLGRATKIGEYVKRGEDSGFIKVTLRGDHKEERITITRQINAYNTSEWLFN 124
AL LGGEPQLLGRAT +G YVKRGEDSG++K++LRG+ +EE +TI R+I+ N SEW+FN
Sbjct: 64 ALCLGGEPQLLGRATSVGAYVKRGEDSGYVKISLRGNTREENLTIFRKIDTRNKSEWMFN 123
Query: 125 GNVVPRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQH 184
G+ V +KD+VE IQK NIQV+NLTQFLPQDRVC+FAKLTPVQLLEETEKAVGDPQLP H
Sbjct: 124 GSTVSKKDIVEIIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVHH 183
Query: 185 RALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKAESMKKKLPW 244
RAL++KSR LK +E ++ KN TL QLK E EKDVERVRQR L K +SMKKKLPW
Sbjct: 184 RALVEKSRDLKQLERAVAKNGETLNQLKALVDEQEKDVERVRQRELFLTKVDSMKKKLPW 243
Query: 245 LRYDMKQVEYGEAKIRENXXXXXXXXXXXXXSDLKEPIKKQKEEKDALNVKCKTVSSCLI 304
L+YDMK+ EY +AK R + +KEPI+KQK+EK + KCK V + +
Sbjct: 244 LKYDMKKAEYMDAKKRMKEAEKKLDEAAKNLNSMKEPIEKQKKEKAETDSKCKKVKNLMD 303
Query: 305 DNGNKRMELREKESQLDGELQSKYKEMDNLRKQDNSRQXXXXXXXXXXXXXXXXXXXXHP 364
NG R L EKE + D + + YKE++ L+KQ+ RQ
Sbjct: 304 ANGRNRCHLLEKEDEADARVVATYKELEELKKQEEHRQERILKATEDLVAAERELQNLPV 363
Query: 365 FVPPRDELQKLNDELWKLEHSTSHVRQNKSQAEHEINQKKLLLMKCKERLRGMNNKNTRC 424
+ P +L++L+ ++ +L HS + + K E ++QK+ L +C ++L+ M N N +
Sbjct: 364 YERPVAKLEELSSQVTELHHSINGKKNQKEDNEKLLSQKRYTLRQCVDKLKDMENANNKL 423
Query: 425 LLQLQKCGVEKNFEAYKWVRENRYKFNKDVYGPVLLEVNVPNQKHAQYLEGQVAHHVWKS 484
L L G ++ F+AY+WV++NR++F ++VYGPVL+EVNVPN+++A +LEG V+ ++WKS
Sbjct: 424 LKALANSGADRIFDAYQWVQQNRHEFKREVYGPVLVEVNVPNRENACFLEGHVSFYIWKS 483
Query: 485 FITQDSGDRDLLVKNLKFFDVPILNYTGGDNHQRRPFEISEDMRALGIYSRLDQIFDAPV 544
FITQD DRDLLVKNLK FDVP+LNY G +Q+ PF IS+ MR+LGI++RLDQIFDAP
Sbjct: 484 FITQDPEDRDLLVKNLKRFDVPVLNYVGNSGNQKAPFHISDQMRSLGIHARLDQIFDAPD 543
Query: 545 VVKETMISTSMLDLSYIGSKETDQKSEVVPRLGIMDLWTPENHYRWFDSRYVNHVGAIVH 604
VKE + S L+ SYIGSK TDQ++E V +LGI D WTP+NHYRW SRY H A V
Sbjct: 544 AVKEVLNSQFGLEDSYIGSKITDQRAEEVYKLGIKDFWTPDNHYRWSSSRYGGHSSASVD 603
Query: 605 HVDPPKLLSNTSNVGGIENLISDERELEERIATLEESIKRSLEEERRLRNQVASLHKQRE 664
V +LL +VG +E L S + ELE+ I +EE+ K E+RRL + A LHK+RE
Sbjct: 604 SVYQSRLLLCGVDVGELEKLRSRKEELEDSILFMEETHKSLQTEQRRLEEEAAKLHKERE 663
Query: 665 GINITTRNEQEKRKKLLGRIEQRKAILKSIAEQDDMDTEIAKLVDQAEKYNIQRFHNAIK 724
I + E++KR++L R +QRK L+S+ +++DMD +AKL+DQA + N R+ AI
Sbjct: 664 EIVNVSYLEKKKRRELESRYQQRKTKLESLEQEEDMDASVAKLIDQASRANADRYTYAIN 723
Query: 725 MKDLLIEAMGYRQNVVELRMSLIEFDAKIGEMEAKLKKPENFALQVKLHFDGCKKETENC 784
+K LL+EA+ ++ + E M+ IE + KI E E +K+ E A Q+ L + CKKE E
Sbjct: 724 LKKLLVEAVAHKWSYAEKHMASIELERKIRESEINIKQYEKTAQQLSLAVEYCKKEVEGK 783
Query: 785 RQQLTDSLNYAKSIARLTPELEKEFLEMATTIEELEAAIQDTTAQANSILFVNHNILEQY 844
+Q+L + A+S+A +TPEL+KEF+EM TT+EELEAAIQD +QANSILF+N NIL++Y
Sbjct: 784 QQRLATAKRDAESVATITPELKKEFMEMPTTVEELEAAIQDNLSQANSILFINENILQEY 843
Query: 845 EDRQRHIEDLAVKLEADKNESRRCLAELDNIKGKWLPTLRNLVAQINETFRCNFQEMAVA 904
E RQ I ++ KLE DK + C+ E+D++K KWLPTLR LV QINETF NFQEMAVA
Sbjct: 844 EHRQSQIYTISTKLETDKRDLSICMKEIDSLKEKWLPTLRQLVGQINETFSHNFQEMAVA 903
Query: 905 GEVSLEEHDMDFDKFGILIKVKFRENSQLQILSAHHQSGGERSVSTIVYLVSLQDLTNCP 964
GEVSL+E D DFD++GI IKVKFRE+ QLQ+LS+HHQSGGERSVSTI+YLVSLQDLTNCP
Sbjct: 904 GEVSLDERDTDFDQYGIHIKVKFRESGQLQVLSSHHQSGGERSVSTILYLVSLQDLTNCP 963
Query: 965 FRVVDEINQGMDPINERKMFQQLVRAASKANTPQCFLLTPKLLPDLQYSEACSILNVMNG 1024
FRVVDEINQGMDPINERKMFQQLVRAAS+ NTPQCFLLTPKLLP+L+YSEACSILN+MNG
Sbjct: 964 FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPELEYSEACSILNIMNG 1023
Query: 1025 PWIGQASKVWTIGDSW-SIITRHVEENLC 1052
P+I + SKVW++GDSW S+ R E + C
Sbjct: 1024 PYIAEPSKVWSLGDSWGSLNRRRTEASQC 1052
>AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing
nucleoside triphosphate hydrolases superfamily protein |
chr5:24714551-24721841 REVERSE LENGTH=1057
Length = 1057
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 115/249 (46%), Gaps = 19/249 (7%)
Query: 13 TRGEDDYM-----PGNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALG 67
R D ++ G+IL I++ NFM L+ + G +N + G NGSGKS+++ A+ +
Sbjct: 6 ARASDSFIKQRSGSGSILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVA 65
Query: 68 LGGEPQLLGRATKIGEYVKRGEDSGFIKVTLRGDHKEE--------RITITRQINAYNTS 119
G + RA + +++K G ++V ++ ++ I I R+I T+
Sbjct: 66 FGCRARGTQRAATLKDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATA 125
Query: 120 EWL--FNGNVVP--RKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAV 175
L + G V R ++ E ++ NI V+N + QD+ +F L ++ +
Sbjct: 126 TVLKDYLGKKVSNKRDELRELVEHFNIDVENPCVVMSQDKSREF--LHSGNDKDKFKFFF 183
Query: 176 GDPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKA 235
L + + L L +++ E T+K +++ +EL ++ + Q E+ +
Sbjct: 184 KATLLQQVNDLLQSIYEHLTKATAIVDELENTIKPIEKEISELRGKIKNMEQVEEIAQRL 243
Query: 236 ESMKKKLPW 244
+ +KKKL W
Sbjct: 244 QQLKKKLAW 252
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 844 YEDRQRHIEDLAVKLEADKNESRRCLAELDNIKGKWLPTLRN---LVAQINETFRCNFQE 900
YE +R I A K ++ ++ + +A + + +W RN L Q+ F + +
Sbjct: 880 YESLERKI---AKKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGK 936
Query: 901 MAVAGEVSLEEHDMDFDKFGILIKVKFRENSQLQIL-SAHHQSGGERSVSTIVYLVSLQD 959
++G + + ++ + I+VK +++ ++ SGGERS ST+ + ++L +
Sbjct: 937 KGISGHIKV-----SYENKTLSIEVKMPQDATSNVVRDTKGLSGGERSFSTLCFALALHE 991
Query: 960 LTNCPFRVVDEINQGMDPINERKMFQQLVRAASKANTPQCFLLTP 1004
+T PFR +DE + MD ++ + LV A + Q +TP
Sbjct: 992 MTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGS-QWMFITP 1035
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of
chromosomes (SMC) family protein |
chr3:17486765-17493178 FORWARD LENGTH=1171
Length = 1171
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 33/260 (12%)
Query: 23 NILEIELSNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATK 80
+I EI L F ++ PG P N + G NGSGKS+++ +I LG RA
Sbjct: 2 HIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 81 IGEYVKRGEDSGFIKVTLR-------------GDHKEERITITRQINAYNTSEWLFNGNV 127
+ E V + +G + T+ G IT+TRQI +++L NG +
Sbjct: 62 LQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKL 121
Query: 128 VPRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQHRAL 187
V + + V+N + Q R+ + + P+++L E+A G + A
Sbjct: 122 AQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGTRMYENKKEA- 180
Query: 188 IDKSRALKHIELSLEKNEGTLKQLKERNAELEKDV----ERVRQRNELLAKAESMKKKLP 243
ALK +LEK + ++ E N LEKD+ E++R+ + + +L
Sbjct: 181 -----ALK----TLEKKQ---TKVDEINKLLEKDILPALEKLRREKSQYMQWANGNAELD 228
Query: 244 WLRYDMKQVEYGEA-KIREN 262
L+ EY +A KIR+N
Sbjct: 229 RLKRFCVAFEYVQAEKIRDN 248
>AT5G07660.1 | Symbols: SMC6A | structural maintenance of
chromosomes 6A | chr5:2422839-2429912 FORWARD
LENGTH=1058
Length = 1058
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 40/248 (16%)
Query: 22 GNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATKI 81
G IL I L NFM L+ + G +N + G NGSGKS+++ A+ + G + RA +
Sbjct: 21 GKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATL 80
Query: 82 GEYVKRGEDSGFIKVTLRGDHKE--------ERITITRQINAYNTSEWL--FNGNVVP-- 129
+++K G + V L+ ++ + + I R+I+ + L G +
Sbjct: 81 KDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140
Query: 130 RKDVVETIQKLNIQVDNLTQFLPQDRVCQ-------------FAKLTPVQLLEETEKAVG 176
++++ E ++ NI V+N + QD+ + F K T +Q +++ +++G
Sbjct: 141 KEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDILQSIG 200
Query: 177 DPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKAE 236
++ + AL L++ E T+K +++ EL + ++ + E+ +
Sbjct: 201 TK---------LNSANAL------LDEMEKTIKPIEKEINELLEKIKNMEHVEEITQQVL 245
Query: 237 SMKKKLPW 244
+KKKL W
Sbjct: 246 HLKKKLAW 253
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 827 TAQANSILFVNHNILEQYEDRQRHIEDLAV-------KLEADKNESRRCLAEL----DNI 875
+AQ N I NH + + E+ I+DL + K+ + + C +L D +
Sbjct: 853 SAQINKI---NHRLKRENENYSESIDDLRIMHGEKEQKIGKKRKTYKSCREKLKVCKDAV 909
Query: 876 KGKWLPTLRN---LVAQINETFRCNFQEMAVAGEVSLEEHDMDFDKFGILIKVKF-RENS 931
+W RN L ++ F + + ++G + + D I+VK ++ +
Sbjct: 910 DSRWNKLQRNKDLLKRELTWQFNHHLGKKGISGNIRVSYEDKTLS-----IEVKMPQDAT 964
Query: 932 QLQILSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAA 991
+ SGGERS ST+ + ++LQ++T P R +DE + MD ++ + L+ A
Sbjct: 965 NSAVRDTRGLSGGERSFSTLCFTLALQNMTEAPIRAMDEFDVFMDAVSRKISLDTLIDFA 1024
Query: 992 SKANTPQCFLLTP 1004
K + Q +TP
Sbjct: 1025 LKQGS-QWMFITP 1036
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 23 NILEIELSNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATK 80
+I EI L F ++ G P N + G NGSGKS+++ +I LG RA
Sbjct: 2 HIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 81 IGEYVKRGEDSGFIKVTLR-------------GDHKEERITITRQINAYNTSEWLFNGNV 127
+ E V + +G K T+ G + IT+TRQI +++L NG +
Sbjct: 62 LQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGKL 121
Query: 128 VPRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVG 176
V + + V+N + Q R+ + + P ++L E+A G
Sbjct: 122 AQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 22 GNILEIELSNFMTFD-YLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEP-QLLGRAT 79
G IL++E+ NF ++ + P +IGPNGSGKS+L+ AI+ LG QL G
Sbjct: 9 GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68
Query: 80 KIGEYV-------KRGEDSGFIKVTLRGDHKEERITITRQINAYNTSEWLFNGNVVPRKD 132
K Y +RG F+++ + D E + TR I + SE+ + VV +
Sbjct: 69 KDLIYAFDDRDKEQRGR-KAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDE 126
Query: 133 VVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQHRALIDK 190
++ L I V + Q V A P +L E+ G +L +++ L +K
Sbjct: 127 YNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEK 184
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
of chromosomes (SMC) family protein |
chr3:20235818-20243701 FORWARD LENGTH=1238
Length = 1238
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 22 GNILEIELSNFMTFD-YLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEP-QLLGRAT 79
G IL++E+ NF ++ + P +IGPNGSGKS+L+ AI+ LG QL G
Sbjct: 9 GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68
Query: 80 KIGEYV-------KRGEDSGFIKVTLRGDHKEERITITRQINAYNTSEWLFNGNVVPRKD 132
K Y +RG F+++ + D E + TR I + SE+ + VV +
Sbjct: 69 KDLIYAFDDRDKEQRGR-KAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDE 126
Query: 133 VVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQHRALIDK 190
++ L I V + Q V A P +L E+ G +L +++ L +K
Sbjct: 127 YNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEK 184