Miyakogusa Predicted Gene

Lj3g3v0824800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0824800.1 tr|A9RY09|A9RY09_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,33.89,6e-19,DUF3411,Protein of unknown function DUF3411;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.41517.1
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12470.1 | Symbols:  | Protein of unknown function (DUF3411) ...   222   2e-58
AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 an...   107   8e-24
AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 an...   107   9e-24
AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 an...   107   9e-24

>AT5G12470.1 | Symbols:  | Protein of unknown function (DUF3411) |
           chr5:4044950-4047290 REVERSE LENGTH=386
          Length = 386

 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 131/163 (80%)

Query: 99  AMLVLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWLMKFGGFKERLLG 158
           AML+L E+G  LE+ P DLAAA+ AGR+PG ++ R+ +L++SAV RWLM+FGGF+ERLL 
Sbjct: 105 AMLLLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLA 164

Query: 159 DDLFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPIL 218
           DDLF+ KL MEC V IFTK AAE ERR+E F  EL+ V A+V   I+  F+LV+ PAP +
Sbjct: 165 DDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTV 224

Query: 219 SLKPPLAVSAGPIAKLFYGCPENAFQVALAGTSYTILQRIGAI 261
           SL+PPLA++AG I+K F+ CP+NAFQVAL+GTSYT+LQR+GAI
Sbjct: 225 SLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAI 267


>AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr3:20829407-20832669 FORWARD LENGTH=745
          Length = 745

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 102 VLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWL-MKFGGFKERLLGDD 160
           V+  AG+  +  P D+   +  G V   +++  F LE+  +   L  +F GF+ERLL D 
Sbjct: 426 VMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQGFRERLLADP 485

Query: 161 LFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPILSL 220
            FL +L +E  + I T   A+ E+RKE F +E+D+V+ + V G V  F  VW PAP LS 
Sbjct: 486 KFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSF 545

Query: 221 KPPLAVSAGP-----IAKLFYGCPENAFQVALAGTSYTILQRIGAIVVCVGSFKASQVVI 275
                 + GP     +  L    P+NAFQ +LAG  + +  RI +++V         VV 
Sbjct: 546 LSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVS 605

Query: 276 SF 277
           SF
Sbjct: 606 SF 607


>AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 102 VLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWL-MKFGGFKERLLGDD 160
           V+  AG+  +  P D+   +  G V   I++ +F LE+  +   L  +F GF+ERLL D 
Sbjct: 417 VMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFRERLLADP 476

Query: 161 LFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPILSL 220
            FL +L +E  + I T   A+ E+RKE F +ELD+V+ + V   V  F  VW PAP LS 
Sbjct: 477 KFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSF 536

Query: 221 KPPLAVSAGP-----IAKLFYGCPENAFQVALAGTSYTILQRIGAIVVCVGSFKASQVVI 275
                 + GP     +  L    P+NAFQ +L G  +T+  RI ++++         VV 
Sbjct: 537 ISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVS 596

Query: 276 SF 277
           SF
Sbjct: 597 SF 598


>AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score =  107 bits (267), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 102 VLAEAGKSLENFPADLAAAVTAGRVPGLIVRRYFQLEESAVFRWL-MKFGGFKERLLGDD 160
           V+  AG+  +  P D+   +  G V   I++ +F LE+  +   L  +F GF+ERLL D 
Sbjct: 417 VMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFRERLLADP 476

Query: 161 LFLTKLIMECTVVIFTKAAAELERRKEKFTKELDFVVANVVTGIVTGFVLVWFPAPILSL 220
            FL +L +E  + I T   A+ E+RKE F +ELD+V+ + V   V  F  VW PAP LS 
Sbjct: 477 KFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSF 536

Query: 221 KPPLAVSAGP-----IAKLFYGCPENAFQVALAGTSYTILQRIGAIVVCVGSFKASQVVI 275
                 + GP     +  L    P+NAFQ +L G  +T+  RI ++++         VV 
Sbjct: 537 ISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVS 596

Query: 276 SF 277
           SF
Sbjct: 597 SF 598