Miyakogusa Predicted Gene

Lj3g3v0821280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0821280.1 tr|G7J1L2|G7J1L2_MEDTR Crossover junction
endonuclease MUS81 OS=Medicago truncatula GN=MTR_3g022850
,73.01,0,CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81,NULL;
seg,NULL; ERCC4 domain,ERCC4 domain; ERCC4,ERCC,CUFF.41470.1
         (664 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonuclease...   679   0.0  
AT5G39770.1 | Symbols:  | Restriction endonuclease, type II-like...   275   7e-74

>AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonuclease,
           type II-like superfamily protein |
           chr4:15028586-15032461 FORWARD LENGTH=659
          Length = 659

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/669 (53%), Positives = 462/669 (69%), Gaps = 18/669 (2%)

Query: 1   MENRARVRCPENQELCSYMWNKWKEMAEK--GVSDNIEMALSKAHSNVCNSKNPILTIKD 58
           M++  RV CPEN+ L +Y+  K +E AEK  G+S+N+E    K + +VC++K+PI T+KD
Sbjct: 1   MDDERRVLCPENRGLAAYVLQKKQEYAEKPKGLSENLERTFVKGYRSVCDAKDPINTLKD 60

Query: 59  FAQVKGVGKMILKLMQGFFGTGSGGPEPEDL--XXXXXXXXXXXRYVPQRNSVAYALLIT 116
            +Q+KG GK ++KLM+G+F T     E EDL             RY+PQRNSV YALLIT
Sbjct: 61  LSQIKGFGKWMVKLMKGYFDTAVESSEQEDLPDNRAGKKANGKKRYIPQRNSVGYALLIT 120

Query: 117 LYRGTSSGNEFMRKQELIDAAEASGLSRVPIAPELGKGKPGRFGSSPKEWYSGWNCMKTL 176
           L+R T++G EFMRKQELIDAA+A+GLS  P+ PE GKGK G  G S +EWYSGW+CM TL
Sbjct: 121 LHRRTTNGKEFMRKQELIDAADANGLSHAPVGPEKGKGKAG-LGHSKREWYSGWSCMTTL 179

Query: 177 IAKGLVVKSSCPAKYMLTQEGKEAASDCLSRSGMTESLE-KSASVENPLHMDKENSLDME 235
           I KGLVVKSS PAKYMLT EG+E A++C+ RSG+ +S++  S    +P    K+      
Sbjct: 180 IQKGLVVKSSNPAKYMLTVEGREVANECILRSGLPDSVDILSVDEMDPTPQAKKTPNQNP 239

Query: 236 PDSHDMEPEVMSPLTQRKKPIDVPLDSLERFTNMGYSKEQIVAAFTDVSGRHPNKDVSSL 295
             S  M  E+     + +    +P D LE+FT  GYSKEQ+VAAF +VS    +KD S+L
Sbjct: 240 TCSFTMREELPYVDPRCRAQSAIPSDILEKFTPFGYSKEQVVAAFREVSDGSGDKDPSTL 299

Query: 296 WPAVLCHLREEQVYGSQPESQ-IRENNPQILRTNTVVNDPSGFIGKESRTVSSSFGGHVA 354
           W +V+CHLR+ +VY S P+S+  ++++    ++     D  G   K+ R+ +    G   
Sbjct: 300 WLSVMCHLRQAEVYNSCPDSRNSKKDSSGPFKSQIRQVDLEGSRAKKFRSCND---GSTL 356

Query: 355 NFCSPDIPPRTLRACSSANYPMQKPSQDGLKSKMNILSVPPLSLGERFEDAYEVILILDD 414
           N CS       ++ACSS+       + DG K   NI  +PPL  GE FE+AY+VILILDD
Sbjct: 357 NPCSSG-SSHAVKACSSS------LASDGTKGITNIPRLPPLQFGETFEEAYDVILILDD 409

Query: 415 REQFATQGSRSRKIVENIRTQFKIQIEVRRLPVGDGIWIARHKTLDSEYVLDFIVERKKI 474
           RE+FAT+GSRSR IVENI ++F I+IEVRRLPVGD IWIARHK L++EYVLDFI ERK +
Sbjct: 410 REKFATKGSRSRNIVENICSEFNIKIEVRRLPVGDCIWIARHKYLETEYVLDFIAERKNV 469

Query: 475 DDLRSSIRDNRYKDQXXXXXXXXXXXXIYLVEGDPNASEAAESIKTACFTTEILEGFDIQ 534
           DD+RSSIRDNRY+DQ            IY++EGDPN S+AAESIKTACFTTEILEGFD+ 
Sbjct: 470 DDMRSSIRDNRYRDQKLRLQRSGFKKLIYILEGDPNHSDAAESIKTACFTTEILEGFDVL 529

Query: 535 RTSGLGDTLRKYGYLTQAISQYYKSEFFE-DNVKCSETCPPFDEFIRRCQEHEKMTVSDV 593
           RT GLG+TLRKYGYLT++I QYYK    + D  K + +CP FD F++RCQ+ +KMT+SDV
Sbjct: 530 RTHGLGETLRKYGYLTKSIYQYYKLRVNDNDQSKGAASCPSFDSFVKRCQDLDKMTISDV 589

Query: 594 FAVQLMQVPQVTEEIAMAVLDLYPTXXXXXXXXXXXDGDAHAQEEMLQRQSNNVINASAS 653
           FA+QLMQVPQVTEEIA+AVLD+YPT           + D  AQEEML+ +SNNVI ASAS
Sbjct: 590 FAIQLMQVPQVTEEIAIAVLDMYPTLLSLASAYSHLEADVSAQEEMLRNRSNNVICASAS 649

Query: 654 RNIFQLVWG 662
           +NIF+LVWG
Sbjct: 650 KNIFKLVWG 658


>AT5G39770.1 | Symbols:  | Restriction endonuclease, type II-like
            superfamily protein | chr5:15919241-15927549 REVERSE
            LENGTH=1272
          Length = 1272

 Score =  275 bits (703), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 49/305 (16%)

Query: 365  TLRACSSANYPMQKPSQDGLKSKMNILSVPPLSLGERFEDAYEVILILDDREQFATQGSR 424
             L+ACSS+       + DG +    I  +PPL  GE FE+ Y+VILILDDREQFAT+G  
Sbjct: 991  ALKACSSS------LASDGTEGVTTIPRLPPLRFGEAFEEVYDVILILDDREQFATKG-- 1042

Query: 425  SRKIVENIRTQFKIQIEVRRLPVGDGIWIARHKTLDSEYVLDFIVERKKIDDLRSSIRDN 484
                                           HK    EYVLDFIVERK +DD+RSSI DN
Sbjct: 1043 -------------------------------HKYQQDEYVLDFIVERKNVDDMRSSIMDN 1071

Query: 485  RYKDQXXXXXXXXXXXXIYLVEGDPNASEAAESIKTACFTTEILEGFDIQRTSGLGDTLR 544
            RYKDQ            IY++EGDPN S+ AESIKTACFTTEILEGFD+ RT+GLG+TLR
Sbjct: 1072 RYKDQKLRLQRSGIKKLIYILEGDPNQSKTAESIKTACFTTEILEGFDVVRTNGLGETLR 1131

Query: 545  KYGYLTQAISQYYKSEFFEDNVKCSETCPPFDEFIRRCQEHEKMTVSDVFAVQLMQVPQV 604
            KYGYLT++I QYYKS   +D  K +++CP +D+F++RC +  KMT+SDVFA+QLMQV  +
Sbjct: 1132 KYGYLTKSIYQYYKSLVNDDQRKVADSCPSYDDFVQRCPDLGKMTISDVFAIQLMQVLSL 1191

Query: 605  TEE---------IAMAVLDLYPTXXXXXXXXXXXDGDAHAQEEMLQRQSNNVINASASRN 655
             +           A+AVLD Y T           D +  AQEEML+ QSNNVI ASAS+N
Sbjct: 1192 AKPSFGFLSATFFAIAVLDKYKTLRSLASAYSKLD-NVSAQEEMLRNQSNNVICASASKN 1250

Query: 656  IFQLV 660
            I++LV
Sbjct: 1251 IYKLV 1255



 Score =  182 bits (463), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 131/193 (67%), Gaps = 6/193 (3%)

Query: 19  MWNKWKEMAEKGVSDNIEMALSKAHSNVCNSKNPILTIKDFAQVKGVGKMILKLMQGFFG 78
           M NK ++   KG+S+  EM   KA+ NVC++K+ I T+KD +++KG GK ++KLMQG+F 
Sbjct: 754 MSNK-RDHKPKGLSEYQEMKFVKAYRNVCDAKDSIDTLKDLSKIKGFGKYMVKLMQGYFV 812

Query: 79  TGSGGPEPEDLXXXXXXXXXXXR--YVPQRNSVAYALLITLYR-GTSSGNEFMRKQELID 135
           TG+   E E L              Y PQRN+ AYALL TL+R  T++G + MRKQ+L+D
Sbjct: 813 TGAASSEQEALPGNRAGKKAKGSEPYKPQRNTAAYALL-TLHRFKTANGKKLMRKQKLMD 871

Query: 136 AAEASGLSRVPIAPELGKGKPGRFGSSPKEWYSGWNCMKTLIAKGLVVKSSCPAKYMLTQ 195
           AA+ASGLS V IAPE GKGK G  G+S +EWYSGW+CM  LI KGLVVK S PAKYMLT 
Sbjct: 872 AADASGLSHVSIAPEKGKGKAG-LGTSKREWYSGWSCMSKLIEKGLVVKFSNPAKYMLTV 930

Query: 196 EGKEAASDCLSRS 208
           EG+  A D   RS
Sbjct: 931 EGRNVADDLDPRS 943