Miyakogusa Predicted Gene

Lj3g3v0821170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0821170.1 Non Chatacterized Hit- tr|A9PA47|A9PA47_POPTR
Putative uncharacterized protein OS=Populus trichocarp,47.17,2e-19,
,CUFF.41747.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41430.5 | Symbols: ERD15 | dehydration-induced protein (ERD1...    99   2e-21
AT2G41430.2 | Symbols: ERD15, LSR1, CID1 | dehydration-induced p...    99   2e-21
AT2G41430.4 | Symbols: ERD15, LSR1, CID1 | dehydration-induced p...    99   2e-21
AT2G41430.1 | Symbols: ERD15, LSR1, CID1 | dehydration-induced p...    99   2e-21
AT2G41430.3 | Symbols: ERD15, LSR1, CID1 | dehydration-induced p...    90   9e-19
AT4G14270.1 | Symbols:  | Protein containing PAM2 motif which me...    77   6e-15
AT4G14270.2 | Symbols:  | Protein containing PAM2 motif which me...    77   6e-15

>AT2G41430.5 | Symbols: ERD15 | dehydration-induced protein (ERD15)
           | chr2:17269736-17270314 FORWARD LENGTH=163
          Length = 163

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 1   MALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEE-----D 55
           MA+VSGR S LNP+APLFIPAA+R+VEDFSP+WW+LV +STW+ DYW SQ ++      D
Sbjct: 1   MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 56  FGESGINSTNDDVENMISETLDLGIDQEDLNFLEHEFEQLAMSHEDQEFPVRDIDPNDGK 115
            GE+     + DV +++ E+ D    ++  +    EF        DQ F        DG+
Sbjct: 61  NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEF--------DQGF--------DGR 104

Query: 116 KPXXXXXXXXXXXXXXXEPKSPKERGLKS----PKHLEKPAQHVN--IKSAPSRIHQPR 168
                              KS   R  +S     K+ EKPA+  N  + +AP  IHQPR
Sbjct: 105 MYYQAPSEFGFGKNGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163


>AT2G41430.2 | Symbols: ERD15, LSR1, CID1 | dehydration-induced
           protein (ERD15) | chr2:17269736-17270314 FORWARD
           LENGTH=163
          Length = 163

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 1   MALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEE-----D 55
           MA+VSGR S LNP+APLFIPAA+R+VEDFSP+WW+LV +STW+ DYW SQ ++      D
Sbjct: 1   MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 56  FGESGINSTNDDVENMISETLDLGIDQEDLNFLEHEFEQLAMSHEDQEFPVRDIDPNDGK 115
            GE+     + DV +++ E+ D    ++  +    EF        DQ F        DG+
Sbjct: 61  NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEF--------DQGF--------DGR 104

Query: 116 KPXXXXXXXXXXXXXXXEPKSPKERGLKS----PKHLEKPAQHVN--IKSAPSRIHQPR 168
                              KS   R  +S     K+ EKPA+  N  + +AP  IHQPR
Sbjct: 105 MYYQAPSEFGFGKNGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163


>AT2G41430.4 | Symbols: ERD15, LSR1, CID1 | dehydration-induced
           protein (ERD15) | chr2:17269736-17270314 FORWARD
           LENGTH=163
          Length = 163

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 1   MALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEE-----D 55
           MA+VSGR S LNP+APLFIPAA+R+VEDFSP+WW+LV +STW+ DYW SQ ++      D
Sbjct: 1   MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 56  FGESGINSTNDDVENMISETLDLGIDQEDLNFLEHEFEQLAMSHEDQEFPVRDIDPNDGK 115
            GE+     + DV +++ E+ D    ++  +    EF        DQ F        DG+
Sbjct: 61  NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEF--------DQGF--------DGR 104

Query: 116 KPXXXXXXXXXXXXXXXEPKSPKERGLKS----PKHLEKPAQHVN--IKSAPSRIHQPR 168
                              KS   R  +S     K+ EKPA+  N  + +AP  IHQPR
Sbjct: 105 MYYQAPSEFGFGKNGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163


>AT2G41430.1 | Symbols: ERD15, LSR1, CID1 | dehydration-induced
           protein (ERD15) | chr2:17269736-17270314 FORWARD
           LENGTH=163
          Length = 163

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 27/179 (15%)

Query: 1   MALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEE-----D 55
           MA+VSGR S LNP+APLFIPAA+R+VEDFSP+WW+LV +STW+ DYW SQ ++      D
Sbjct: 1   MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 56  FGESGINSTNDDVENMISETLDLGIDQEDLNFLEHEFEQLAMSHEDQEFPVRDIDPNDGK 115
            GE+     + DV +++ E+ D    ++  +    EF        DQ F        DG+
Sbjct: 61  NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEF--------DQGF--------DGR 104

Query: 116 KPXXXXXXXXXXXXXXXEPKSPKERGLKS----PKHLEKPAQHVN--IKSAPSRIHQPR 168
                              KS   R  +S     K+ EKPA+  N  + +AP  IHQPR
Sbjct: 105 MYYQAPSEFGFGKNGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163


>AT2G41430.3 | Symbols: ERD15, LSR1, CID1 | dehydration-induced
          protein (ERD15) | chr2:17269736-17270098 FORWARD
          LENGTH=120
          Length = 120

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 5/80 (6%)

Query: 1  MALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKE-----ED 55
          MA+VSGR S LNP+APLFIPAA+R+VEDFSP+WW+LV +STW+ DYW SQ ++      D
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 56 FGESGINSTNDDVENMISET 75
           GE+     + DV +++ E+
Sbjct: 61 NGENENGGGHIDVADLLPES 80


>AT4G14270.1 | Symbols:  | Protein containing PAM2 motif which
          mediates interaction with the PABC domain of polyadenyl
          binding proteins. | chr4:8218517-8219037 FORWARD
          LENGTH=143
          Length = 143

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 2  ALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEEDF-GESG 60
          A +  R S LNPNAP+F P   REVEDFSP+WW+LV +S WFRD+W S + E +F G   
Sbjct: 3  ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDD 62

Query: 61 INSTNDDVENMISET 75
           +   ++ E MI+ +
Sbjct: 63 FSVMEEEFEEMIASS 77


>AT4G14270.2 | Symbols:  | Protein containing PAM2 motif which
          mediates interaction with the PABC domain of polyadenyl
          binding proteins. | chr4:8218517-8219037 FORWARD
          LENGTH=141
          Length = 141

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 2  ALVSGRSSDLNPNAPLFIPAALREVEDFSPQWWELVESSTWFRDYWSSQHKEEDF-GESG 60
          A +  R S LNPNAP+F P   REVEDFSP+WW+LV +S WFRD+W S + E +F G   
Sbjct: 3  ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDD 62

Query: 61 INSTNDDVENMISET 75
           +   ++ E MI+ +
Sbjct: 63 FSVMEEEFEEMIASS 77