Miyakogusa Predicted Gene
- Lj3g3v0807630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0807630.1 tr|B9HVH4|B9HVH4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_770743 PE=3
SV=1,46.81,2e-17,coiled-coil,NULL; no description,NULL; HSP20-like
chaperones,HSP20-like chaperone; HSP20,Alpha cryst,CUFF.41427.1
(379 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27140.1 | Symbols: | HSP20-like chaperones superfamily prot... 65 6e-11
AT3G10680.1 | Symbols: | HSP20-like chaperones superfamily prot... 57 2e-08
AT5G20970.1 | Symbols: | HSP20-like chaperones superfamily prot... 57 3e-08
AT4G27670.1 | Symbols: HSP21 | heat shock protein 21 | chr4:1381... 49 5e-06
>AT2G27140.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr2:11598496-11599264 REVERSE LENGTH=224
Length = 224
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 15 SARAVYKNIQPKSEMKENEEAYFLRIYLPGFTKESIQISYLLPSRMVRIVGERRIDASNK 74
+A +Y +P S K + L IYLPGF KE +++ + +R +R++G+R A NK
Sbjct: 9 NANRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQ-VTTTRKLRVMGDRPAGA-NK 66
Query: 75 WSLFNQTYPVPENCEVEKLQGKIEHGSLIVTMPK 108
W F + +P+P N +V+ + K E +L+V +P+
Sbjct: 67 WIRFRKEFPIPPNIDVDSVSAKFEGANLVVRLPR 100
>AT3G10680.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr3:3337773-3339345 FORWARD LENGTH=490
Length = 490
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 22 NIQPKSEMKENEEAYFLRIYLPGFTKESIQISYLLPSRMVRIVGERRIDASNKWSLFNQT 81
+ +P+++ + + FL + LPGF ++ I+I +R V+I G+R + A K + F++
Sbjct: 25 SFKPRAQWTNSGSSIFLYVNLPGFYRDQIEIKKDERTRTVQIQGQRPLSAQTK-ARFSEA 83
Query: 82 YPVPENCEVEKLQGKIEHGSLIVTMP 107
Y VP+ C++ KL HG L + P
Sbjct: 84 YRVPDTCDMTKLSTSFSHGLLTIEFP 109
>AT5G20970.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:7123132-7124001 FORWARD LENGTH=249
Length = 249
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 9 TFGTPRSARAVYKNIQPKSEMKENEEAYFLRIYLPGFTKESIQISYLLPSRMVRIVGERR 68
FG R VY+ +P + +A L LPGF KE +++S + +R +R+ GER
Sbjct: 3 NFGIER----VYQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVS-VTATRKLRLTGERP 57
Query: 69 IDASNKWSLFNQTYPVPENCEVEKLQGKIEHGSLIVTMP--KKFIP---PPTPI 117
NKW F+Q PVP +++ + + L + P K IP PPTP+
Sbjct: 58 T-GGNKWIRFHQEIPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQTKPPTPV 110
>AT4G27670.1 | Symbols: HSP21 | heat shock protein 21 |
chr4:13819048-13819895 REVERSE LENGTH=227
Length = 227
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 8 PTFGTPRSARAVYKNIQPKSEMKENEEAYFLRIYLPGFTKESIQISYLLPSRMVRIVGE- 66
P G R V + I+ ++KE E +R +PG +KE ++IS + ++ I GE
Sbjct: 111 PVSGRNRGGSGVSE-IRAPWDIKEEEHEIKMRFDMPGLSKEDVKIS--VEDNVLVIKGEQ 167
Query: 67 RRIDASNKWS-----LFNQTYPVPENCEVEKLQGKIEHGSLIVTMPK 108
++ D+ + WS + +P+NCE +K++ ++++G L +T+PK
Sbjct: 168 KKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPK 214