Miyakogusa Predicted Gene

Lj3g3v0807600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0807600.1 tr|G7IVB3|G7IVB3_MEDTR 17.6 kDa class I heat
shock protein OS=Medicago truncatula GN=MTR_3g007660
PE,27.93,0.0000000000001,seg,NULL; coiled-coil,NULL,CUFF.41424.1
         (407 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily ...    67   2e-11
AT3G10680.1 | Symbols:  | HSP20-like chaperones superfamily prot...    54   2e-07
AT5G20970.1 | Symbols:  | HSP20-like chaperones superfamily prot...    53   4e-07
AT2G27140.1 | Symbols:  | HSP20-like chaperones superfamily prot...    49   9e-06

>AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily
           protein | chr5:1427217-1428390 FORWARD LENGTH=366
          Length = 366

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 13  ETQETPESHLLLVNIPDGFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAH 72
           E ++ PE+ +L +++  GFA+E +     +    +RV GE+PL N K SRF+E + VP +
Sbjct: 24  EWKDQPEATILNIDL-TGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQN 82

Query: 73  CDISRVRGRFDGKTITIIMPK 93
           C + ++ G F    +TI MPK
Sbjct: 83  CLVDKIHGSFKNNVLTITMPK 103


>AT3G10680.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr3:3337773-3339345 FORWARD LENGTH=490
          Length = 490

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 24/159 (15%)

Query: 20  SHLLLVNIPDGFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAHCDISRVR 79
           S  L VN+P GF R+ I  K +     V++ G++PL     +RF E Y+VP  CD++++ 
Sbjct: 38  SIFLYVNLP-GFYRDQIEIKKDERTRTVQIQGQRPLSAQTKARFSEAYRVPDTCDMTKLS 96

Query: 80  GRFDGKTITIIMPKIPGLVPETTEQEPPKPAVQETQ-----PNQGNDKDETPQQSAIGDD 134
             F    +TI  P I     E  +QE    AVQ+ +      NQ       P  S +G  
Sbjct: 97  TSFSHGLLTIEFPAI----VEANKQE---KAVQDQEKIGQRSNQEKSGGPGPNGSTLGRK 149

Query: 135 KEKATASEVKDQKGT-QEGTS---SEQDP---KSTIEGK 166
           K    A E + Q GT QE T+   +E+ P   KS +EGK
Sbjct: 150 K----ALEEEKQVGTSQEKTTPTLNEEAPKTYKSVVEGK 184


>AT5G20970.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr5:7123132-7124001 FORWARD LENGTH=249
          Length = 249

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 18  PESHLLLVNIPDGFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAHCDISR 77
           P++ +L+ ++P GF +E +   V     ++R+ GE+P G NK  RF +   VP   DI  
Sbjct: 23  PDAEVLVADLP-GFKKEQLKVSVTAT-RKLRLTGERPTGGNKWIRFHQEIPVPLTVDIDS 80

Query: 78  VRGRFDGKTITIIMPKIPGLVPETTEQEPPKPAV 111
           V   F    + I  PK+   +P+T   +PP P +
Sbjct: 81  VSAMFKDNKLYIRHPKLKTEIPQT---KPPTPVI 111


>AT2G27140.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr2:11598496-11599264 REVERSE LENGTH=224
          Length = 224

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 23  LLVNIPDGFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAHCDISRVRGRF 82
           L + +P GF +E +  +V     ++RV G++P G NK  RF + + +P + D+  V  +F
Sbjct: 32  LTIYLP-GFRKEQLKVQVTTT-RKLRVMGDRPAGANKWIRFRKEFPIPPNIDVDSVSAKF 89

Query: 83  DGKTITIIMPK 93
           +G  + + +P+
Sbjct: 90  EGANLVVRLPR 100