Miyakogusa Predicted Gene

Lj3g3v0807590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0807590.1 Non Chatacterized Hit- tr|I1KVZ7|I1KVZ7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,47.69,0.00000000000002,seg,NULL; coiled-coil,NULL,CUFF.41423.1
         (383 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily ...    63   3e-10

>AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily
           protein | chr5:1427217-1428390 FORWARD LENGTH=366
          Length = 366

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 6   GFAREHIGAKVEYDFGRVRVYGEKPLGNNKSSRFDERYKVPAHCDISRVRGRFDGKTITI 65
           GFA+E +     +    +RV GE+PL N K SRF+E + VP +C + ++ G F    +TI
Sbjct: 40  GFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTI 99

Query: 66  IMPK 69
            MPK
Sbjct: 100 TMPK 103