Miyakogusa Predicted Gene

Lj3g3v0807570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0807570.1 Non Chatacterized Hit- tr|I3SQI4|I3SQI4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.07,0,WD40,WD40
repeat; RETINOBLASTOMA BINDING PROTEIN 5-RELATED,NULL; RETINOBLASTOMA
BINDING PROTEIN 5,NU,CUFF.41419.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21060.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   720   0.0  
AT2G43770.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    65   2e-10
AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   4e-06

>AT3G21060.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:7377822-7379942 FORWARD LENGTH=547
          Length = 547

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/513 (69%), Positives = 410/513 (79%), Gaps = 6/513 (1%)

Query: 1   MNASIIDPLQGDFPEVIEEYLEYGCMKCIAFNRRGTLLAAGCNDGSCVIWDFITRGIAKV 60
           MNA IIDPLQGDFPEVIEEYLE+G +KC+AFN RG+LLAAGC DG CVIWDF TRGIAK 
Sbjct: 1   MNAPIIDPLQGDFPEVIEEYLEHGVIKCVAFNHRGSLLAAGCADGGCVIWDFETRGIAKE 60

Query: 61  LSDDGCSSPITSICWSKFGHRILVSAADKSLTLWDVMSGKKITRIVLQQTPLQARLHPGS 120
           + D+ CS+ ITS+ WSK+GHR+LVSAADKSLTLWDV +G+KI R +LQQTPLQARL+PG 
Sbjct: 61  IRDNDCSAAITSVSWSKYGHRLLVSAADKSLTLWDVSTGEKIARTILQQTPLQARLNPGL 120

Query: 121 STPSVCLTCPLSCAPMIVDLNTGNTTLLKVSVSETCNGPTPPLRNKCSDGVTSFTPTAAC 180
           S+PS+CL CPLS APMIVD +   TTLL VSV E  +   PP R+KC +    F+P AAC
Sbjct: 121 SSPSLCLACPLSSAPMIVDFDIDCTTLLPVSVPEMPDVLAPPQRSKCPESNPPFSPAAAC 180

Query: 181 FNKYGNLVYLGNSKGEILISDYKDGKVRALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVI 240
           FNK G+LVY+GNSKGEILI DYK  +V ALV  SG + +KNIVFSRNGQYLLTNS+DR I
Sbjct: 181 FNKCGDLVYIGNSKGEILIVDYKSVRVLALVSASGAAPVKNIVFSRNGQYLLTNSHDRTI 240

Query: 241 RIYENLLPLKGEVKALDDMGENLTDLSSIEALKAVGSKCLTLFREFQDSITKVHWKAPGF 300
           RIYENLLP K  +K+L+D+G+N+  L  IE +K VGSKCLTLFREFQDS+TK+HWKAP F
Sbjct: 241 RIYENLLPAKNVLKSLEDLGKNIDGLDGIEKMKTVGSKCLTLFREFQDSVTKMHWKAPCF 300

Query: 301 SGDGEWVVGGSASKGEHKIYVWDRAGHLVKILEGPKEALVDLAWHPVHPIVVSVSLNGLV 360
           SGDGEWVVGGSA KGEHKIY+WDRAGHLVKILEGPKEAL+DLAWHPVHPI+VSVSL GLV
Sbjct: 301 SGDGEWVVGGSACKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIIVSVSLAGLV 360

Query: 361 YIWAKDYTENWSAFAPDFKXXXXXXXXXXXXXXFDLIPETEKVKGSDINEDEEVDIMEFD 420
           YIWAKDYTENWSAFAPDFK              FDLIPETEKVK  D+NEDEEVDI   +
Sbjct: 361 YIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKVLDVNEDEEVDIDTVE 420

Query: 421 KDAAFSDSDMSQEELCFLPATPSRDSPEQQEKCVENSSKLVDNNNTGSPLSEETGPNGHA 480
           KD AFSDSDMS EEL +LPA P  D+ +QQ+  VE S KL++   + SP SEE G NGH 
Sbjct: 421 KD-AFSDSDMSVEELRYLPAEPIPDTNDQQDNLVE-SIKLIEGQISASPASEEAGQNGH- 477

Query: 481 MDHASSPLADDAG-GRMKRKRKPSEKVLELQAE 512
             HASSP A++ G  R KRKRKPSEK +ELQAE
Sbjct: 478 --HASSPQAEEMGETRGKRKRKPSEKAMELQAE 508


>AT2G43770.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:18134272-18135303 REVERSE LENGTH=343
          Length = 343

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 136/335 (40%), Gaps = 54/335 (16%)

Query: 29  IAFNRRGTLLAAGCNDGSCVIWDFITRGIAKVLSDDGCSSPITSICWSKFGHRILVSAAD 88
           + FN  GTL+A+G +D    +W  +       +   G  + I  + W+  G +I+ ++ D
Sbjct: 59  MKFNPAGTLIASGSHDREIFLWR-VHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPD 117

Query: 89  KSLTLWDVMSGKKITRIVLQQTPLQARLHPGSSTPSVCLTCPLSCAPMIVDLNTGNTTLL 148
           K++  WDV +GK+I ++              SS  + C  CP    P ++   + + T  
Sbjct: 118 KTVRAWDVETGKQIKKMAEH-----------SSFVNSC--CPTRRGPPLIISGSDDGTAK 164

Query: 149 KVSVSETCNGPTPPLRNKCSDGVTSFTPTAACFNKYGNLVYLGNSKGEILISDYKDGKVR 208
              + +     T P +         +  TA  F+   + ++ G    ++ + D + G+  
Sbjct: 165 LWDMRQRGAIQTFPDK---------YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEA- 214

Query: 209 ALVPTSGGSVIKNIVFSRNGQYLLTNSNDRVIRIYENLLPLKGEVKALDDMGENLTDLSS 268
            +        I  +  S +G YLLTN  D  + +++ + P                    
Sbjct: 215 TMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD-MRPY------------------- 254

Query: 269 IEALKAVGSKCLTLFREFQDSITKVHWKAPGFSGDGEWVVGGSASKGEHKIYVWDRAG-H 327
                A  ++C+ +F   Q +  K   K   +S DG  V  GS+ +    +++WD     
Sbjct: 255 -----APQNRCVKIFEGHQHNFEKNLLKC-SWSPDGTKVTAGSSDR---MVHIWDTTSRR 305

Query: 328 LVKILEGPKEALVDLAWHPVHPIVVSVSLNGLVYI 362
            +  L G   ++ +  +HP  PI+ S S +  +Y+
Sbjct: 306 TIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYL 340


>AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18413690-18415223 FORWARD LENGTH=317
          Length = 317

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 26  MKCIAFNRRGTLLAAGCNDGSCVIWDFITRGIAKVLSDDGCSSPITSICWSKFGHRILVS 85
           +  + FNR G+L+ +   DG C IWD  T    K L DD  + P++ + +S  G  ILV 
Sbjct: 158 VTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDE-NPPVSFVRFSPNGKFILVG 216

Query: 86  AADKSLTLWDVMSGK 100
             D +L LW++ S K
Sbjct: 217 TLDNTLRLWNISSAK 231