Miyakogusa Predicted Gene

Lj3g3v0766030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0766030.1 Non Chatacterized Hit- tr|I3T5K4|I3T5K4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,90.7,0.000000000000004, ,CUFF.41349.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18060.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   157   2e-39

>AT1G18060.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 74 Blast hits to 74 proteins in 29
           species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi -
           0; Plants - 49; Viruses - 0; Other Eukaryotes - 6
           (source: NCBI BLink). | chr1:6212065-6213314 REVERSE
           LENGTH=226
          Length = 226

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 1/97 (1%)

Query: 2   NSYAKRIENGVYLGPIGQLTFEGRLSWKNRILAFIFENLRIKIGPLKPLQISLGKKEDA- 60
           ++  KRIENGVYLGP G LTFEGR SWKNRILAF+FE +RIKIGPL PL+ SLGKK+   
Sbjct: 128 DAAGKRIENGVYLGPFGALTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVE 187

Query: 61  EPNTKSPFFIWFYVDEEIAVARGHSGGTAFWCRSRQV 97
           EP+ K PFFIWFY+DEEIAVARG SGGTAFWCR R++
Sbjct: 188 EPSNKDPFFIWFYIDEEIAVARGRSGGTAFWCRCRRI 224