Miyakogusa Predicted Gene

Lj3g3v0755540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0755540.1 tr|G7J3H4|G7J3H4_MEDTR Class III HD-Zip protein
OS=Medicago truncatula GN=MTR_3g109800 PE=3
SV=1,94.33,0,seg,NULL,CUFF.41383.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32880.1 | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8 | c...   288   2e-78
AT1G52150.3 | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leu...   265   1e-71
AT1G52150.1 | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leu...   265   1e-71
AT1G52150.2 | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leu...   260   3e-70
AT2G34710.1 | Symbols: PHB, ATHB14, ATHB-14, PHB-1D | Homeobox-l...   213   6e-56
AT1G30490.1 | Symbols: PHV, ATHB9 | Homeobox-leucine zipper fami...   204   4e-53
AT5G60690.1 | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper ...   177   4e-45

>AT4G32880.1 | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8 |
           chr4:15863587-15867822 REVERSE LENGTH=833
          Length = 833

 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 164/196 (83%), Gaps = 2/196 (1%)

Query: 1   MLESDGIDDVTLLVNSSPSKMM-GANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRF 59
           +LESDGIDDVTLLVNSSP+KMM  ++L + NG+ SM S+VLCAKASMLLQNVPP+ILLRF
Sbjct: 413 ILESDGIDDVTLLVNSSPTKMMMTSSLPFANGYTSMPSAVLCAKASMLLQNVPPSILLRF 472

Query: 60  LREHRSEWXXXXXXXXXXXXXXXGPCSLPGAR-GSFGGQVILPLAHTIENEEFMEVIKLE 118
           LREHR EW               GPCSLP  R GSFGGQVILPLAHTIENEEFMEVIKLE
Sbjct: 473 LREHRQEWADNSIDAYSAAAIKAGPCSLPIPRPGSFGGQVILPLAHTIENEEFMEVIKLE 532

Query: 119 NMGYYRDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPL 178
           ++G+Y++DM MP D+FLLQ+CSGVDE+AV + AEL+FAPIDASFSDDAPI+PSGFRI+PL
Sbjct: 533 SLGHYQEDMMMPADIFLLQMCSGVDENAVESCAELIFAPIDASFSDDAPIIPSGFRIIPL 592

Query: 179 DSGTDAASPNRTLDLA 194
           DS ++  SPNRTLDLA
Sbjct: 593 DSKSEGLSPNRTLDLA 608


>AT1G52150.3 | Symbols: ATHB-15, ATHB15, CNA, ICU4 |
           Homeobox-leucine zipper family protein / lipid-binding
           START domain-containing protein | chr1:19410118-19413961
           REVERSE LENGTH=794
          Length = 794

 Score =  265 bits (678), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 152/191 (79%), Gaps = 4/191 (2%)

Query: 5   DGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLREHR 64
           D +DDVT+ VNSSP K+MG NL + NGF  +++ VLCAKASMLLQNVPPAILLRFLREHR
Sbjct: 419 DSMDDVTITVNSSPDKLMGLNLTFANGFAPVSNVVLCAKASMLLQNVPPAILLRFLREHR 478

Query: 65  SEWXXXXXXXXXXXXXXXGPCSLPGAR-GSFGGQVILPLAHTIENEEFMEVIKLENMGYY 123
           SEW               GPCS   AR G FGGQVILPLAHTIE+EEFMEVIKLE +G+ 
Sbjct: 479 SEWADNNIDAYLAAAVKVGPCS---ARVGGFGGQVILPLAHTIEHEEFMEVIKLEGLGHS 535

Query: 124 RDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSGTD 183
            +D  +P D+FLLQLCSG+DE+AVGT AEL+FAPIDASF+DDAP+LPSGFRI+PLDS  +
Sbjct: 536 PEDAIVPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKE 595

Query: 184 AASPNRTLDLA 194
            +SPNRTLDLA
Sbjct: 596 VSSPNRTLDLA 606


>AT1G52150.1 | Symbols: ATHB-15, ATHB15, CNA, ICU4 |
           Homeobox-leucine zipper family protein / lipid-binding
           START domain-containing protein | chr1:19409913-19413961
           REVERSE LENGTH=836
          Length = 836

 Score =  265 bits (677), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 152/191 (79%), Gaps = 4/191 (2%)

Query: 5   DGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLREHR 64
           D +DDVT+ VNSSP K+MG NL + NGF  +++ VLCAKASMLLQNVPPAILLRFLREHR
Sbjct: 419 DSMDDVTITVNSSPDKLMGLNLTFANGFAPVSNVVLCAKASMLLQNVPPAILLRFLREHR 478

Query: 65  SEWXXXXXXXXXXXXXXXGPCSLPGAR-GSFGGQVILPLAHTIENEEFMEVIKLENMGYY 123
           SEW               GPCS   AR G FGGQVILPLAHTIE+EEFMEVIKLE +G+ 
Sbjct: 479 SEWADNNIDAYLAAAVKVGPCS---ARVGGFGGQVILPLAHTIEHEEFMEVIKLEGLGHS 535

Query: 124 RDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSGTD 183
            +D  +P D+FLLQLCSG+DE+AVGT AEL+FAPIDASF+DDAP+LPSGFRI+PLDS  +
Sbjct: 536 PEDAIVPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKE 595

Query: 184 AASPNRTLDLA 194
            +SPNRTLDLA
Sbjct: 596 VSSPNRTLDLA 606


>AT1G52150.2 | Symbols: ATHB-15, ATHB15, CNA, ICU4 |
           Homeobox-leucine zipper family protein / lipid-binding
           START domain-containing protein | chr1:19409913-19413961
           REVERSE LENGTH=837
          Length = 837

 Score =  260 bits (665), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 152/192 (79%), Gaps = 5/192 (2%)

Query: 5   DGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLREHR 64
           D +DDVT+ VNSSP K+MG NL + NGF  +++ VLCAKASMLLQNVPPAILLRFLREHR
Sbjct: 419 DSMDDVTITVNSSPDKLMGLNLTFANGFAPVSNVVLCAKASMLLQNVPPAILLRFLREHR 478

Query: 65  SEWXXXXXXXXXXXXXXXGPCSLPGAR-GSFGGQVILPLAHTIENEEFMEVIKLENMGYY 123
           SEW               GPCS   AR G FGGQVILPLAHTIE+EEFMEVIKLE +G+ 
Sbjct: 479 SEWADNNIDAYLAAAVKVGPCS---ARVGGFGGQVILPLAHTIEHEEFMEVIKLEGLGHS 535

Query: 124 RDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSGT- 182
            +D  +P D+FLLQLCSG+DE+AVGT AEL+FAPIDASF+DDAP+LPSGFRI+PLDS   
Sbjct: 536 PEDAIVPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKQ 595

Query: 183 DAASPNRTLDLA 194
           + +SPNRTLDLA
Sbjct: 596 EVSSPNRTLDLA 607


>AT2G34710.1 | Symbols: PHB, ATHB14, ATHB-14, PHB-1D |
           Homeobox-leucine zipper family protein / lipid-binding
           START domain-containing protein | chr2:14639548-14643993
           REVERSE LENGTH=852
          Length = 852

 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 139/195 (71%), Gaps = 5/195 (2%)

Query: 4   SDGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLREH 63
           SDG +DVT+++N SP K  G+  G N+  PS  S VLCAKASMLLQNVPPA+L+RFLREH
Sbjct: 430 SDGAEDVTVMINLSPGKFGGSQYG-NSFLPSFGSGVLCAKASMLLQNVPPAVLVRFLREH 488

Query: 64  RSEWXXXXXXXXXXXXXXXGPCSLPGAR-GSF-GGQVILPLAHTIENEEFMEVIKLENMG 121
           RSEW                P ++P AR G F   QVILPLA T+E+EE +EV++LE   
Sbjct: 489 RSEWADYGVDAYAAASLRASPFAVPCARAGGFPSNQVILPLAQTVEHEESLEVVRLEGHA 548

Query: 122 YYRDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSG 181
           Y  +DM +  D++LLQLCSGVDE+ VG  A+LVFAPID SF+DDAP+LPSGFRI+PL+  
Sbjct: 549 YSPEDMGLARDMYLLQLCSGVDENVVGGCAQLVFAPIDESFADDAPLLPSGFRIIPLEQK 608

Query: 182 T--DAASPNRTLDLA 194
           +  + AS NRTLDLA
Sbjct: 609 STPNGASANRTLDLA 623


>AT1G30490.1 | Symbols: PHV, ATHB9 | Homeobox-leucine zipper family
           protein / lipid-binding START domain-containing protein
           | chr1:10796328-10800744 REVERSE LENGTH=841
          Length = 841

 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 137/198 (69%), Gaps = 6/198 (3%)

Query: 2   LESDGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLR 61
           + SDG +D+T+++NSS +K  G+  G ++  PS  S VLCAKASMLLQNVPP +L+RFLR
Sbjct: 424 MSSDGGEDITIMINSSSAKFAGSQYG-SSFLPSFGSGVLCAKASMLLQNVPPLVLIRFLR 482

Query: 62  EHRSEWXXXXXXXXXXXXXXXGPCSLPGAR-GSF-GGQVILPLAHTIENEEFMEVIKLEN 119
           EHR+EW                P ++P  R G F   QVILPLA T+E+EEF+EV++L  
Sbjct: 483 EHRAEWADYGVDAYSAASLRATPYAVPCVRTGGFPSNQVILPLAQTLEHEEFLEVVRLGG 542

Query: 120 MGYYRDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLD 179
             Y  +DM +  D++LLQLCSGVDE+ VG  A+LVFAPID SF+DDAP+LPSGFR++PLD
Sbjct: 543 HAYSPEDMGLSRDMYLLQLCSGVDENVVGGCAQLVFAPIDESFADDAPLLPSGFRVIPLD 602

Query: 180 SGT---DAASPNRTLDLA 194
             T   D  S +RT DLA
Sbjct: 603 QKTNPNDHQSASRTRDLA 620


>AT5G60690.1 | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper
           family protein / lipid-binding START domain-containing
           protein | chr5:24397734-24401933 FORWARD LENGTH=842
          Length = 842

 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 127/199 (63%), Gaps = 13/199 (6%)

Query: 2   LESDGIDDVTLLVNSSPSKMMGANLGYNNGFPSMTSSVLCAKASMLLQNVPPAILLRFLR 61
           +  DG +D+ + +NS+       +L   +   S    VLCAKASMLLQNVPPA+L+RFLR
Sbjct: 415 MHCDGAEDIIVAINSTK------HLNNISNSLSFLGGVLCAKASMLLQNVPPAVLIRFLR 468

Query: 62  EHRSEWXXXXXXXXXXXXXXXGPCSLPGARGS--FGGQVILPLAHTIENEEFMEVIKLEN 119
           EHRSEW               G  + PG R +   G Q+I+PL HTIE+EE +EV++LE 
Sbjct: 469 EHRSEWADFNVDAYSAATLKAGSFAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVVRLEG 528

Query: 120 MGYYRDDMTMPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLD 179
               ++D  M  DV LLQ+C+G+DE+AVG  +EL+FAPI+  F DDAP++PSGFR++P+D
Sbjct: 529 HSLAQEDAFMSRDVHLLQICTGIDENAVGACSELIFAPINEMFPDDAPLVPSGFRVIPVD 588

Query: 180 SGT----DAASPN-RTLDL 193
           + T    D  + N RTLDL
Sbjct: 589 AKTGDVQDLLTANHRTLDL 607