Miyakogusa Predicted Gene

Lj3g3v0740460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0740460.1 CUFF.41250.1
         (373 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79220.1 | Symbols:  | Mitochondrial transcription terminatio...   303   1e-82
AT1G21150.1 | Symbols:  | Mitochondrial transcription terminatio...    59   6e-09
AT5G64950.1 | Symbols:  | Mitochondrial transcription terminatio...    59   7e-09
AT5G23930.1 | Symbols:  | Mitochondrial transcription terminatio...    57   2e-08
AT1G62110.1 | Symbols:  | Mitochondrial transcription terminatio...    53   3e-07
AT1G62010.1 | Symbols:  | Mitochondrial transcription terminatio...    52   5e-07
AT3G46950.1 | Symbols:  | Mitochondrial transcription terminatio...    49   6e-06

>AT1G79220.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:29799227-29800426 FORWARD
           LENGTH=399
          Length = 399

 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/331 (48%), Positives = 233/331 (70%), Gaps = 9/331 (2%)

Query: 48  RNKWKDAT----EVLSKWGCSDDDLMRIFARCPALRNADPTQVQSKLCLLSDLGFGASEL 103
           + K +D T    +VL +WGC DD++ ++F R PAL+ A+  Q++ KL LL  LG  +S+L
Sbjct: 73  KEKVRDITSSPLQVLRRWGCDDDEISKLFTRRPALQRANVAQLEFKLSLLKPLGITSSDL 132

Query: 104 VKITNCRPRFFRTRISDSFFDKRLASLMSLFESKEMLQKAIVRNPSLICENGYD-IEATV 162
           VKI NCRPRFF  R+     D+R+   M +  SKE+L++ I+RNPSL+  +  D I+  +
Sbjct: 133 VKILNCRPRFFSCRL---VLDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAI 189

Query: 163 ALYEELGVSKRDLVQMLLLRPTILARTSFDAEKLEYISMTGLSKESKLYKYVVTLIGISR 222
             Y+ LG S++DLV ML+ RPT++ RT+F+ EK EYI  TG+++ESK++KYV  +IG+SR
Sbjct: 190 EYYKGLGFSQQDLVAMLISRPTLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSR 249

Query: 223 VETIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMKLEAKIILKY 282
           +ETI EKV    +FGFS++E++ L G+ P +L+ S +KVQRNMTFV+ +MKL A  ++K+
Sbjct: 250 METIEEKVRNLEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKH 309

Query: 283 PYLLYANVDTVLKPRLLLAWKVEEICPNLQIKGVPTIVRALRMTEERFLHSFIKCQPKEI 342
           P LL  N+++ LKPR  L  +V E+     IK V +I RA+RM+E+RFL  ++ C P++I
Sbjct: 310 PCLLLLNLESRLKPRADLVKRVLEMRLKPLIKEV-SIFRAVRMSEKRFLKVYVMCHPQDI 368

Query: 343 ANELMEFYERTKETRRLAESAKKCITRGFPF 373
           A ELMEFYE++K  +RLAE +KK I +GFPF
Sbjct: 369 ATELMEFYEKSKNMKRLAEKSKKYIRKGFPF 399


>AT1G21150.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:7406406-7407578 REVERSE
           LENGTH=390
          Length = 390

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 107/243 (44%), Gaps = 12/243 (4%)

Query: 62  GCSDDDLMRIFARCPALRNADPTQVQS-KLCLLSDLGFGASELVKITNCRPRFFRTRISD 120
           G ++D +  +    P + +  P  V S KL   S +GF  S+  K+ +  P+     +  
Sbjct: 99  GFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSL-- 156

Query: 121 SFFDKRLA----SLMSLFESKEMLQKAIVRNPSLIC-ENGYDIEATVALYEELGVSKRDL 175
               KRL     SL S+   +E + K + R       +  + +   V++  ELGV  + +
Sbjct: 157 ---HKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSI 213

Query: 176 VQMLLLRP-TILARTSFDAEKLEYISMTGLSKESKLYKYVVTLIGISRVETIREKVSKFT 234
             ++   P T  +R     E L  +   G   +   + + +     +    +  K   F 
Sbjct: 214 KWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQ 273

Query: 235 QFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMKLEAKIILKYPYLLYANVDTVL 294
            FG+SK++    + R P+ +T S +K+   + +++  + L+A+ I+  P +L  +++  +
Sbjct: 274 CFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRI 333

Query: 295 KPR 297
           KPR
Sbjct: 334 KPR 336


>AT5G64950.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:25953887-25955062 FORWARD
           LENGTH=391
          Length = 391

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 161 TVALYEELGVSKRDLVQMLLLRPTILARTSFDAEKLE-YISMT---GLSKESKLYKYVVT 216
            ++  E  G+    L  +L  +P I    +   EKL  Y+S     G +  S++  + V 
Sbjct: 184 NISYLETCGIVGSQLASLLRRQPRIF---NLSEEKLRGYVSRALDLGFTLNSRMLVHAVI 240

Query: 217 LIGISRVETIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMKLEA 276
            +     +T   KV  F   GFS+DE+  ++ R P ++  S DK+     F L  M LE 
Sbjct: 241 SLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLER 300

Query: 277 KIILKYPYLLYANVDTVLKPRLLLAWKVEEIC-----PNLQIKGVPTIVRALRMTEERFL 331
           + + K P +L  N++  + PRL    KV +I         + K    +V  + MTEE FL
Sbjct: 301 EALAKRPCVLSYNLEKRVIPRL----KVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFL 356

Query: 332 HSFIKCQPKEIANELMEFYE 351
             ++     EIA EL+  Y+
Sbjct: 357 EKYVVRFGDEIAEELLVAYK 376


>AT5G23930.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:8074625-8075998 REVERSE
           LENGTH=457
          Length = 457

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 7/182 (3%)

Query: 158 IEATVALYEELGVSKRDLVQMLLLRPTILARTSFDA-EKLEYISMTGLSKESK--LYKYV 214
           IE  V  Y  LG+S  ++  +    P  L  +  +  +K E +   GL+KE    + K  
Sbjct: 255 IEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFETLKRVGLTKEEVCLVVKKY 314

Query: 215 VTLIGISRVETIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMKL 274
              +G S  E I + V  F + GF+KDEV  ++ R P  +  + D V++   F++ TM  
Sbjct: 315 PECVGTSE-EKIVKSVKTFLELGFTKDEVLMIIKRHPQCIGLAADSVKKKTEFLVKTMGW 373

Query: 275 EAKIILKYPYLLYANVDTVLKPRLLLAWKVEEICPNLQIKGVPTIVRALRMTEERFLHSF 334
             K++   P +L  +++  + PR  +   ++ +  N  I  +P I   L   + +FL  F
Sbjct: 374 PLKVVASTPIVLGFSLEKFVLPRCNV---IKALMSNGLIGEMPAISSVLTSPKLKFLKLF 430

Query: 335 IK 336
           ++
Sbjct: 431 VE 432


>AT1G62110.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22958094-22959482 REVERSE
           LENGTH=462
          Length = 462

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 16/207 (7%)

Query: 158 IEATVALYEELGVSKRDLVQMLLLRPTILARTSFD-AEKLEYISMTGLSKE---SKLYKY 213
           IE  V +Y+  G +  D+  M    P  L  +     + +E +   GL ++   S L KY
Sbjct: 259 IEERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETLKKCGLLEDEVISVLKKY 318

Query: 214 VVTLIGISRVETIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLGTMK 273
               IG S  + I   +  F   GFS+DE   +V R P  L  S + V++ + FV+  M 
Sbjct: 319 P-QCIGTSE-QKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKKKIEFVVKKMN 376

Query: 274 LEAKIILKYPYLLYANVDTVLKPRLLLAWKVEEICPNLQIKG-----VPTIVRALRMTEE 328
              K ++  P +L  N++    PR      V E   + ++ G     +P +   L  T+E
Sbjct: 377 WPLKDVVSNPTVLGYNLEKRTVPRC----NVIEALMSKRLLGDTGSELPPMSSVLVCTDE 432

Query: 329 RFLHSFIKCQ-PKEIANELMEFYERTK 354
            FL  +++    KE+  ELM  Y R +
Sbjct: 433 LFLKRYVRNHGDKELVLELMTIYTRGR 459


>AT1G62010.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22915886-22917133 FORWARD
           LENGTH=415
          Length = 415

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 60/340 (17%)

Query: 56  EVLSKWGCSDDDLMRIF-ARCPALRNADPTQVQSKLCLLSDLGFGASELVKITNCRPRFF 114
           ++L  +G +D  +  I  +    L + D T + SKL  L   G  +SEL ++ +  P+  
Sbjct: 75  DLLRSYGFTDSQISSIIRSDSRVLIDNDATSLGSKLQFLQSRGASSSELTEVVSTVPKIL 134

Query: 115 RTRISDSF-----FDKRL--ASLMSLFE--SKEMLQKAIVRNPSLICENGYDIEATVALY 165
             R   S      F K +  A   S +E  S  + Q   +RN              + + 
Sbjct: 135 GKREGKSLSRYYDFIKVIIEADKSSKYEKISHSLAQGNKIRN--------------ILVL 180

Query: 166 EELGVSKRDLVQMLLLRPT-ILARTSFDAEKLEYISMTGLSKESKLYKYVVTLIGISRVE 224
            ELGV ++ L+ +L+ +   +  +  FDA   + + M G    +  + + + ++     +
Sbjct: 181 RELGVPQKRLLLLLISKSQPVCGKEKFDASLKKVVEM-GFDPTTSTFVHALHMLYQMSDK 239

Query: 225 TIREKVSKFTQFGFSKDEVFGLVGRQPHVLTFSTDKVQRNMTFVLG---TMKLEAKIILK 281
           TI EK+  +   GFS D+V+ +  + P  LT S  KV  ++   LG   +  +   +  +
Sbjct: 240 TIEEKIRVYRSVGFSVDDVWAMFKKWPRSLTHSEKKVANSIETFLGLGFSRDVFMMMFKR 299

Query: 282 YPYLLYANVDTVLKPRLLLA----WKVEEICPNLQIKG---------------------- 315
           +P  +  + + V K    L     W V+ +    Q+ G                      
Sbjct: 300 FPPCIGYSTEAVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVPRCNVIKVLMSKGL 359

Query: 316 ----VPTIVRALRMTEERFLHSFI-KCQPKEIANELMEFY 350
               +P +   L  T E FL+ ++ K   K++  ELM  +
Sbjct: 360 LESELPPMSSVLTSTSESFLNLYVSKHDDKQLVAELMAIF 399


>AT3G46950.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:17289452-17290804 FORWARD
           LENGTH=450
          Length = 450

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 62  GCSDDDLMRIFARCPALRNADPTQ-VQSKLCLLSDLGFGASELVKITNCRPRFFRTRISD 120
           G  D  + RI    P L   D  + ++ KL  L   G  +SE+++I +  P         
Sbjct: 95  GFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVP--------- 145

Query: 121 SFFDKRLASLMSLFES--KEMLQKAIVRNPSLICENGYDIEA--TVALYEELGVSKRDLV 176
           +  DK+    +SL+    K+++Q    ++  + C  G        +++  ELGV ++ L 
Sbjct: 146 TILDKKGEESVSLYYDFVKDIMQDG--KSLCISCPEGKKGNRIRNISVLRELGVPQKLLF 203

Query: 177 QMLLLR-PTILARTSFDAEKLEYISMTGLSKESKLYKYVVTLIGISRVETIREKVSKFTQ 235
            +L+ R   +  +  F+    + + M     +SK  + +  +  +S  +TI EKV+ + +
Sbjct: 204 SLLISRYQPVCGKEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSE-KTIEEKVNVYKR 262

Query: 236 FGFSKDEVFGLVGRQPHVLTFSTDKV 261
            GFS+ E++ +  + P+ L FS  K+
Sbjct: 263 LGFSEAEIWAIFKKWPYFLKFSEKKI 288