Miyakogusa Predicted Gene

Lj3g3v0730070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0730070.1 Non Chatacterized Hit- tr|J3ML71|J3ML71_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G2,37.4,0.000000000000008,bromo domain,Bromodomain; seg,NULL;
BROMODOMAIN-CONTAINING PROTEIN,NULL; FALZ-RELATED
BROMODOMAIN-CO,CUFF.41221.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing pro...    81   8e-16
AT1G17790.1 | Symbols:  | DNA-binding bromodomain-containing pro...    79   4e-15
AT1G73150.1 | Symbols: GTE3 | global transcription factor group ...    78   8e-15
AT3G27260.1 | Symbols: GTE8 | global transcription factor group ...    74   2e-13
AT3G27260.2 | Symbols: GTE8 | global transcription factor group ...    73   2e-13
AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal doma...    71   8e-13
AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extratermi...    71   8e-13
AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrater...    71   8e-13
AT5G65630.1 | Symbols: GTE7 | global transcription factor group ...    65   5e-11
AT1G06230.3 | Symbols: GTE4 | global transcription factor group ...    65   5e-11
AT1G06230.2 | Symbols: GTE4 | global transcription factor group ...    65   5e-11
AT1G06230.1 | Symbols: GTE4 | global transcription factor group ...    65   5e-11
AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    65   5e-11
AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 | chr5:25377180...    65   5e-11
AT5G10550.1 | Symbols: GTE2 | global transcription factor group ...    61   7e-10
AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 | chr5:25374413...    60   1e-09

>AT5G46550.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr5:18884439-18886503 REVERSE LENGTH=494
          Length = 494

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 14/124 (11%)

Query: 46  KGLARTVETIDPLKKK--------QCFVALQKLMEHRDGRAFKNG----KGFAADC-HLS 92
           +G  + ++ + P KK+        QC   L+ LMEHR G  FK      K    D  ++ 
Sbjct: 48  RGGPKELDEVQPKKKQRLDCDWSSQCLALLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVI 107

Query: 93  SKPLMDFETVLHKLDKGFYANPDQFAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFK 152
            KP MD  TV  KL K  Y+N D+FA DVR+ F NAM Y P  +E+H IA++++++FE +
Sbjct: 108 QKP-MDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVR 166

Query: 153 WKSM 156
           W+S+
Sbjct: 167 WESL 170


>AT1G17790.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr1:6125532-6127276 REVERSE LENGTH=487
          Length = 487

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFK---NGKGFA-ADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K C   L KLM+H+    F    + KG    D H   K  MD  TV  KL K  Y +P  
Sbjct: 134 KNCNSLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPLD 193

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NA+LY P  H+++R AE L ++FE KW S+E
Sbjct: 194 FAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVSIE 234


>AT1G73150.1 | Symbols: GTE3 | global transcription factor group E3
           | chr1:27504327-27505996 REVERSE LENGTH=461
          Length = 461

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFAA----DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K C   L KLM+H+ G  F            D H   K  MD  TV  +L K  Y +P +
Sbjct: 121 KSCNNLLTKLMKHKSGWIFNTPVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPLE 180

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAMLY P  H+++ +AE L +LFE KW  +E
Sbjct: 181 FAEDVRLTFNNAMLYNPVGHDVYHMAEILLNLFEEKWVPLE 221


>AT3G27260.1 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068411-10072403 FORWARD LENGTH=813
          Length = 813

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 61  KQCFVALQKLMEHRDGRAFKNG----KGFAADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           KQC   L+KL  H     F+      K    D   + K  MD  TV   L  G Y++P +
Sbjct: 178 KQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHE 237

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSM 156
           FA DVR+ F NAM Y P  H++H + + LS LFE +WK++
Sbjct: 238 FAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTI 277


>AT3G27260.2 | Symbols: GTE8 | global transcription factor group E8
           | chr3:10068558-10072403 FORWARD LENGTH=764
          Length = 764

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 61  KQCFVALQKLMEHRDGRAFKNG----KGFAADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           KQC   L+KL  H     F+      K    D   + K  MD  TV   L  G Y++P +
Sbjct: 129 KQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHE 188

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSM 156
           FA DVR+ F NAM Y P  H++H + + LS LFE +WK++
Sbjct: 189 FAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTI 228


>AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal domain
           protein 9 | chr5:4605173-4608517 FORWARD LENGTH=689
          Length = 689

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFAA----DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           KQC   L++LM H+ G  F            D     +  MD  TV +KL  G Y+ P +
Sbjct: 139 KQCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSE 198

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAM Y P  ++++ +A+ L   FE +WK++E
Sbjct: 199 FAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLE 239


>AT5G14270.1 | Symbols: ATBET9, BET9 | bromodomain and extraterminal
           domain protein 9 | chr5:4605173-4608517 FORWARD
           LENGTH=688
          Length = 688

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFAA----DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           KQC   L++LM H+ G  F            D     +  MD  TV +KL  G Y+ P +
Sbjct: 139 KQCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSE 198

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAM Y P  ++++ +A+ L   FE +WK++E
Sbjct: 199 FAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLE 239


>AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and
           extraterminal domain protein 10 | chr3:275582-278386
           REVERSE LENGTH=620
          Length = 620

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 58  LKKKQCFVALQKLMEHRDGRAFKNG----KGFAADCHLSSKPLMDFETVLHKLDKGFYAN 113
           L+ KQC   L++LM  +    F       K    D     K  MD  TV  KL  G Y++
Sbjct: 128 LRMKQCESLLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYSS 187

Query: 114 PDQFAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           P +F+ DVR+ F NAM Y P+++ ++R A+ LS  FE +WK++E
Sbjct: 188 PSEFSADVRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTIE 231


>AT5G65630.1 | Symbols: GTE7 | global transcription factor group E7
           | chr5:26226311-26228257 REVERSE LENGTH=590
          Length = 590

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 63  CFVALQKLMEHRDGRAFKN-----GKGFAADCHLSSKPLMDFETVLHKLDKGFYANPDQF 117
           C   L KLM+H+    F       G G   D H   K  MD  TV   LDKGFY +P  F
Sbjct: 173 CSQILVKLMKHKWAWVFNTPVDVVGLGLH-DYHQVVKKPMDLGTVKLNLDKGFYVSPIDF 231

Query: 118 AGDVRILFCNAMLYYPANHEIHRIAEKLSDLFE 150
           A DVR+ F NAM Y P   +++ +A+KL D F+
Sbjct: 232 ATDVRLTFDNAMTYNPKGQDVYFMADKLLDHFD 264


>AT1G06230.3 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFK---NGKGFAA-DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K C   L++LM+H+ G  F    + KG    D +   +  MD  T+   L K  Y +P +
Sbjct: 423 KNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPRE 482

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAM Y P   ++H +A  L  +FE +W  +E
Sbjct: 483 FAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIE 523


>AT1G06230.2 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFK---NGKGFAA-DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K C   L++LM+H+ G  F    + KG    D +   +  MD  T+   L K  Y +P +
Sbjct: 423 KNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPRE 482

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAM Y P   ++H +A  L  +FE +W  +E
Sbjct: 483 FAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIE 523


>AT1G06230.1 | Symbols: GTE4 | global transcription factor group E4
           | chr1:1907626-1910183 FORWARD LENGTH=766
          Length = 766

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFK---NGKGFAA-DCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K C   L++LM+H+ G  F    + KG    D +   +  MD  T+   L K  Y +P +
Sbjct: 423 KNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPRE 482

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F NAM Y P   ++H +A  L  +FE +W  +E
Sbjct: 483 FAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIE 523


>AT5G63320.3 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFA----ADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K+C   L +L  H+ G  F+           D     K  MD  T+  +L KG Y++P  
Sbjct: 163 KECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLD 222

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F N++ Y P  ++ H +A+ +S  FE  WKS+E
Sbjct: 223 FAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIE 263


>AT5G63320.2 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25377180-25378783 REVERSE LENGTH=477
          Length = 477

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFA----ADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K+C   L +L  H+ G  F+           D     K  MD  T+  +L KG Y++P  
Sbjct: 163 KECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLD 222

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F N++ Y P  ++ H +A+ +S  FE  WKS+E
Sbjct: 223 FAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIE 263


>AT5G10550.1 | Symbols: GTE2 | global transcription factor group E2
           | chr5:3332855-3335232 REVERSE LENGTH=678
          Length = 678

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 63  CFVALQKLMEHRDGRAFKN-----GKGFAADCHLSSKPLMDFETVLHKLDKGFYANPDQF 117
           C   L KLM+H+    F N     G G      +  KP MD  TV   L+KG Y +P  F
Sbjct: 253 CGQILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKP-MDLGTVKMNLEKGLYRSPIDF 311

Query: 118 AGDVRILFCNAMLYYPANHEIHRIAEKLSDLFE 150
           A DVR+ F NAM Y P   +++ +AEKL   F+
Sbjct: 312 ASDVRLTFTNAMSYNPKGQDVYLMAEKLLSQFD 344


>AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 |
           chr5:25374413-25378783 REVERSE LENGTH=1061
          Length = 1061

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 61  KQCFVALQKLMEHRDGRAFKNGKGFA----ADCHLSSKPLMDFETVLHKLDKGFYANPDQ 116
           K+C   L +L  H+ G  F+           D     K  MD  T+  +L KG Y++P  
Sbjct: 163 KECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLD 222

Query: 117 FAGDVRILFCNAMLYYPANHEIHRIAEKLSDLFEFKWKSME 157
           FA DVR+ F N++ Y P  ++ H +A+ +S  FE  WKS+E
Sbjct: 223 FAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSIE 263