Miyakogusa Predicted Gene

Lj3g3v0719990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0719990.1 tr|A9SEY9|A9SEY9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233124,32.14,0.000000000008,Tim17,Mitochondrial inner
membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein
PMP24; ,CUFF.41215.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25120.1 | Symbols:  | Mitochondrial import inner membrane tr...   141   2e-34

>AT3G25120.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr3:9149785-9151068 REVERSE LENGTH=189
          Length = 189

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 103/166 (62%), Gaps = 14/166 (8%)

Query: 31  TTRIFIPXXXXXXXXXXXXXISKHRKTLGLANVCASYAANFSIVTGCYCGAREFAIATRK 90
           T R+ I              +SKHR  +   N+   YAANF+IV GCYCGARE    TR+
Sbjct: 30  TKRVLITSLLAGVIGGGAGLVSKHR--IAHPNIPTVYAANFAIVAGCYCGARESVRITRR 87

Query: 91  TGPEDLWSSAIAGFGSGALLGRLYGGHLGALRYSVIFAVVGTSADFAILKLKDVIRDQNK 150
           +  +DL +SAI G  SGALLGRL GG  GA+RYS++FA VGT+ D+A LK K ++     
Sbjct: 88  SEHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYSLVFAAVGTAFDYATLKGKPMLES--- 144

Query: 151 TIYQHIENSKKSGNLLRLPEWFPIRVLDEEALAEKRAQEEQFLAQR 196
             Y+++E+        +LPEW PI+VLDEEALA+K+A EE+   +R
Sbjct: 145 --YRNMES-------FKLPEWSPIKVLDEEALAKKKAHEEKIFPER 181