Miyakogusa Predicted Gene

Lj3g3v0718360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0718360.1 Non Chatacterized Hit- tr|C0PJM2|C0PJM2_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,42.42,9e-19,seg,NULL,CUFF.41164.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64680.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   1e-12
AT5G64680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   1e-12
AT5G64680.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    62   2e-10

>AT5G64680.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleolus;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; Has 1807 Blast hits to 1807 proteins in
           277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:25854433-25855331
           FORWARD LENGTH=203
          Length = 203

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 24  LIDLPMTGSTELWLLRLPYSKDFLSDIHGKELPVNLQNDGKLAWFESSSGKRYDFVSYAC 83
           L D  +T S E WL++ P  +    +I    L +    DG    F+ S+G +YD  S+  
Sbjct: 19  LDDTDLTRSDEFWLIQAPLGQ--FPEIEENTLKIEPDKDGLFGEFKDSNGAKYDLASFHS 76

Query: 84  QEPAETVFIPSATDPIIGKVSRRVSTVHYSDPKE-LEKLSATSAGKV 129
           Q+    + IPS    I+GK++RRV+ V Y +P E L+K+ A +  K+
Sbjct: 77  QDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKL 123


>AT5G64680.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleolus;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; Has 114 Blast hits to 110 proteins in 37
           species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi -
           10; Plants - 37; Viruses - 0; Other Eukaryotes - 25
           (source: NCBI BLink). | chr5:25854433-25855331 FORWARD
           LENGTH=203
          Length = 203

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 24  LIDLPMTGSTELWLLRLPYSKDFLSDIHGKELPVNLQNDGKLAWFESSSGKRYDFVSYAC 83
           L D  +T S E WL++ P  +    +I    L +    DG    F+ S+G +YD  S+  
Sbjct: 19  LDDTDLTRSDEFWLIQAPLGQ--FPEIEENTLKIEPDKDGLFGEFKDSNGAKYDLASFHS 76

Query: 84  QEPAETVFIPSATDPIIGKVSRRVSTVHYSDPKE-LEKLSATSAGKV 129
           Q+    + IPS    I+GK++RRV+ V Y +P E L+K+ A +  K+
Sbjct: 77  QDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKL 123


>AT5G64680.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 53
           Blast hits to 53 proteins in 20 species: Archae - 0;
           Bacteria - 8; Metazoa - 8; Fungi - 0; Plants - 34;
           Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
           | chr5:25854433-25855331 FORWARD LENGTH=211
          Length = 211

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 24  LIDLPMTGSTELWLLRLPYSKDFLSDIHGKELPVNLQNDGKLAWFESSS--------GKR 75
           L D  +T S E WL++ P  +    +I    L +    DG    F+ S+        G +
Sbjct: 19  LDDTDLTRSDEFWLIQAPLGQ--FPEIEENTLKIEPDKDGLFGEFKDSNAGSLHLCLGAK 76

Query: 76  YDFVSYACQEPAETVFIPSATDPIIGKVSRRVSTVHYSDPKE-LEKLSATSAGKV 129
           YD  S+  Q+    + IPS    I+GK++RRV+ V Y +P E L+K+ A +  K+
Sbjct: 77  YDLASFHSQDAGAELIIPSEESMIVGKITRRVALVRYPEPNELLQKMKARTQQKL 131